Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2024-11-20 12:07 -0500 (Wed, 20 Nov 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
teran2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4481 |
nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4479 |
palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" | 4359 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4539 |
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4493 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 779/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
gDRimport 1.4.0 (landing page) Arkadiusz Gladki
| teran2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | |||||||||
nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | ||||||||||
palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | OK | ||||||||||
To the developers/maintainers of the gDRimport package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/gDRimport.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
Package: gDRimport |
Version: 1.4.0 |
Command: /home/biocbuild/R/R/bin/R CMD check --install=check:gDRimport.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings gDRimport_1.4.0.tar.gz |
StartedAt: 2024-11-20 08:01:49 -0000 (Wed, 20 Nov 2024) |
EndedAt: 2024-11-20 08:05:47 -0000 (Wed, 20 Nov 2024) |
EllapsedTime: 238.4 seconds |
RetCode: 0 |
Status: OK |
CheckDir: gDRimport.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD check --install=check:gDRimport.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings gDRimport_1.4.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.20-bioc/meat/gDRimport.Rcheck’ * using R version 4.4.1 (2024-06-14) * using platform: aarch64-unknown-linux-gnu * R was compiled by gcc (GCC) 12.2.1 20220819 (openEuler 12.2.1-14) GNU Fortran (GCC) 10.3.1 * running under: openEuler 22.03 (LTS-SP1) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘gDRimport/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘gDRimport’ version ‘1.4.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘gDRimport’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed convert_MAE_to_PSet 9.537 0.299 9.939 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
gDRimport.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD INSTALL gDRimport ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-4.4.1/site-library’ * installing *source* package ‘gDRimport’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gDRimport)
gDRimport.Rcheck/tests/testthat.Rout
R version 4.4.1 (2024-06-14) -- "Race for Your Life" Copyright (C) 2024 The R Foundation for Statistical Computing Platform: aarch64-unknown-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(gDRimport) > > test_check("gDRimport") 2024-11-20 08:05:18 Building assay index... 2024-11-20 08:05:18 Joining rowData to assayIndex... 2024-11-20 08:05:19 Joining colData to assayIndex... 2024-11-20 08:05:20 Joining assays to assayIndex... 2024-11-20 08:05:22 Setting assayIndex key... 2024-11-20 08:05:23 Building LongTable... 2024-11-20 08:05:25 Building assay index... 2024-11-20 08:05:25 Joining rowData to assayIndex... 2024-11-20 08:05:26 Joining colData to assayIndex... 2024-11-20 08:05:27 Joining assays to assayIndex... 2024-11-20 08:05:28 Setting assayIndex key... 2024-11-20 08:05:29 Building LongTable... INFO [2024-11-20 08:05:30] Manifest loaded successfully INFO [2024-11-20 08:05:30] Manifest loaded successfully INFO [2024-11-20 08:05:30] Reading file /home/biocbuild/R/R-4.4.1/site-library/gDRimport/extdata/data1/RawData_day0.xlsx, sheet Readout_0077vs0068_day7 INFO [2024-11-20 08:05:31] Plate 201904190a read; 384 wells INFO [2024-11-20 08:05:31] Plate 201904190b read; 384 wells INFO [2024-11-20 08:05:31] Plate 201904190c read; 384 wells INFO [2024-11-20 08:05:31] Plate 201904190d read; 384 wells INFO [2024-11-20 08:05:31] Plate 201904190e read; 384 wells INFO [2024-11-20 08:05:31] Plate 201904190f read; 384 wells INFO [2024-11-20 08:05:31] File done INFO [2024-11-20 08:05:31] Reading file /home/biocbuild/R/R-4.4.1/site-library/gDRimport/extdata/data1/RawData_day7.xlsx, sheet Readout_0077vs0068_day7 INFO [2024-11-20 08:05:31] Plate 201904197a read; 384 wells INFO [2024-11-20 08:05:31] Plate 201904197b read; 384 wells INFO [2024-11-20 08:05:31] Plate 201904197c read; 384 wells INFO [2024-11-20 08:05:31] Plate 201904197d read; 384 wells INFO [2024-11-20 08:05:31] Plate 201904197e read; 384 wells INFO [2024-11-20 08:05:31] Plate 201904197f read; 384 wells INFO [2024-11-20 08:05:31] File done INFO [2024-11-20 08:05:31] Reading file /home/biocbuild/R/R-4.4.1/site-library/gDRimport/extdata/data1/RawData_day0.xlsx, sheet Readout_0077vs0068_day7 INFO [2024-11-20 08:05:32] Plate 201904190a read; 384 wells INFO [2024-11-20 08:05:32] Plate 201904190b read; 384 wells INFO [2024-11-20 08:05:32] Plate 201904190c read; 384 wells INFO [2024-11-20 08:05:32] Plate 201904190d read; 384 wells INFO [2024-11-20 08:05:32] Plate 201904190e read; 384 wells INFO [2024-11-20 08:05:32] Plate 201904190f read; 384 wells INFO [2024-11-20 08:05:32] File done INFO [2024-11-20 08:05:32] Reading file /home/biocbuild/R/R-4.4.1/site-library/gDRimport/extdata/data1/RawData_day7.xlsx, sheet Readout_0077vs0068_day7 INFO [2024-11-20 08:05:32] Plate 201904197a read; 384 wells INFO [2024-11-20 08:05:32] Plate 201904197b read; 384 wells INFO [2024-11-20 08:05:32] Plate 201904197c read; 384 wells INFO [2024-11-20 08:05:32] Plate 201904197d read; 384 wells INFO [2024-11-20 08:05:32] Plate 201904197e read; 384 wells INFO [2024-11-20 08:05:32] Plate 201904197f read; 384 wells INFO [2024-11-20 08:05:32] File done INFO [2024-11-20 08:05:32] Reading file /home/biocbuild/R/R-4.4.1/site-library/gDRimport/extdata/data1/RawData_day0.xlsx, sheet Readout_0077vs0068_day7 INFO [2024-11-20 08:05:33] Plate 201904190a read; 384 wells INFO [2024-11-20 08:05:33] Plate 201904190b read; 384 wells INFO [2024-11-20 08:05:33] Plate 201904190c read; 384 wells INFO [2024-11-20 08:05:33] Plate 201904190d read; 384 wells INFO [2024-11-20 08:05:33] Plate 201904190e read; 384 wells INFO [2024-11-20 08:05:33] Plate 201904190f read; 384 wells INFO [2024-11-20 08:05:33] File done INFO [2024-11-20 08:05:33] Reading file /home/biocbuild/R/R-4.4.1/site-library/gDRimport/extdata/data2/RawData_Tecan_96_well_plates.xlsx, sheet H2122-2 INFO [2024-11-20 08:05:33] Reading file /home/biocbuild/R/R-4.4.1/site-library/gDRimport/extdata/data2/RawData_Tecan_96_well_plates.xlsx, sheet H358-2 INFO [2024-11-20 08:05:34] Reading file /home/biocbuild/R/R-4.4.1/site-library/gDRimport/extdata/data2/RawData_Tecan_96_well_plates.xlsx, sheet H358-1 INFO [2024-11-20 08:05:34] Reading file /home/biocbuild/R/R-4.4.1/site-library/gDRimport/extdata/data2/RawData_Tecan_96_well_plates.xlsx, sheet H2122-1 INFO [2024-11-20 08:05:34] Reading Template_7daytreated.xlsx with load_templates_xlsx INFO [2024-11-20 08:05:34] Loading Template_7daytreated.xlsx INFO [2024-11-20 08:05:34] Loading Template_Untreated.xlsx INFO [2024-11-20 08:05:34] Templates loaded successfully! INFO [2024-11-20 08:05:34] Reading Template_7daytreated.xlsx with load_templates_xlsx INFO [2024-11-20 08:05:34] Loading Template_7daytreated.xlsx INFO [2024-11-20 08:05:35] Loading Template_Untreated.xlsx INFO [2024-11-20 08:05:35] Templates loaded successfully! INFO [2024-11-20 08:05:35] Reading D300_trt_Tecan_96_well_plates.xlsx with load_templates_xlsx INFO [2024-11-20 08:05:35] Loading D300_trt_Tecan_96_well_plates.xlsx INFO [2024-11-20 08:05:35] Templates loaded successfully! INFO [2024-11-20 08:05:35] Reading Template_7daytreated.xlsx with load_templates_xlsx INFO [2024-11-20 08:05:35] Loading Template_7daytreated.xlsx INFO [2024-11-20 08:05:35] Templates loaded successfully! INFO [2024-11-20 08:05:35] Manifest loaded successfully INFO [2024-11-20 08:05:35] Reading Template_7daytreated.xlsx with load_templates_xlsx INFO [2024-11-20 08:05:35] Loading Template_7daytreated.xlsx INFO [2024-11-20 08:05:35] Loading Template_Untreated.xlsx INFO [2024-11-20 08:05:35] Templates loaded successfully! INFO [2024-11-20 08:05:35] Reading file /home/biocbuild/R/R-4.4.1/site-library/gDRimport/extdata/data1/RawData_day0.xlsx, sheet Readout_0077vs0068_day7 INFO [2024-11-20 08:05:36] Plate 201904190a read; 384 wells INFO [2024-11-20 08:05:36] Plate 201904190b read; 384 wells INFO [2024-11-20 08:05:36] Plate 201904190c read; 384 wells INFO [2024-11-20 08:05:36] Plate 201904190d read; 384 wells INFO [2024-11-20 08:05:36] Plate 201904190e read; 384 wells INFO [2024-11-20 08:05:36] Plate 201904190f read; 384 wells INFO [2024-11-20 08:05:36] File done INFO [2024-11-20 08:05:36] Reading file /home/biocbuild/R/R-4.4.1/site-library/gDRimport/extdata/data1/RawData_day7.xlsx, sheet Readout_0077vs0068_day7 INFO [2024-11-20 08:05:36] Plate 201904197a read; 384 wells INFO [2024-11-20 08:05:36] Plate 201904197b read; 384 wells INFO [2024-11-20 08:05:36] Plate 201904197c read; 384 wells INFO [2024-11-20 08:05:36] Plate 201904197d read; 384 wells INFO [2024-11-20 08:05:36] Plate 201904197e read; 384 wells INFO [2024-11-20 08:05:36] Plate 201904197f read; 384 wells INFO [2024-11-20 08:05:36] File done INFO [2024-11-20 08:05:36] Manifest loaded successfully INFO [2024-11-20 08:05:36] Reading D300_trt_Tecan_96_well_plates.xlsx with load_templates_xlsx INFO [2024-11-20 08:05:37] Loading D300_trt_Tecan_96_well_plates.xlsx INFO [2024-11-20 08:05:37] Templates loaded successfully! INFO [2024-11-20 08:05:37] Reading file /home/biocbuild/R/R-4.4.1/site-library/gDRimport/extdata/data2/RawData_Tecan_96_well_plates.xlsx, sheet H2122-2 INFO [2024-11-20 08:05:37] Reading file /home/biocbuild/R/R-4.4.1/site-library/gDRimport/extdata/data2/RawData_Tecan_96_well_plates.xlsx, sheet H358-2 INFO [2024-11-20 08:05:37] Reading file /home/biocbuild/R/R-4.4.1/site-library/gDRimport/extdata/data2/RawData_Tecan_96_well_plates.xlsx, sheet H358-1 INFO [2024-11-20 08:05:37] Reading file /home/biocbuild/R/R-4.4.1/site-library/gDRimport/extdata/data2/RawData_Tecan_96_well_plates.xlsx, sheet H2122-1 INFO [2024-11-20 08:05:38] Manifest loaded successfully INFO [2024-11-20 08:05:38] Reading Project40.treated.template.xlsx with load_templates_xlsx INFO [2024-11-20 08:05:38] Loading Project40.treated.template.xlsx INFO [2024-11-20 08:05:38] Loading Project40.untreated.template.xlsx INFO [2024-11-20 08:05:38] Templates loaded successfully! INFO [2024-11-20 08:05:38] Reading file /home/biocbuild/R/R-4.4.1/site-library/gDRimport/extdata/data4/H0109269D00.csv, sheet 0 INFO [2024-11-20 08:05:38] Plate H0109269D00 read; 384 wells INFO [2024-11-20 08:05:38] File done INFO [2024-11-20 08:05:38] Reading file /home/biocbuild/R/R-4.4.1/site-library/gDRimport/extdata/data4/H0109269D01.csv, sheet 0 INFO [2024-11-20 08:05:38] Plate H0109269D01 read; 384 wells INFO [2024-11-20 08:05:38] File done INFO [2024-11-20 08:05:38] Reading file /home/biocbuild/R/R-4.4.1/site-library/gDRimport/extdata/data4/H0309269D00.csv, sheet 0 INFO [2024-11-20 08:05:38] Plate H0309269D00 read; 384 wells INFO [2024-11-20 08:05:38] File done INFO [2024-11-20 08:05:38] Reading file /home/biocbuild/R/R-4.4.1/site-library/gDRimport/extdata/data4/H0309269D01.csv, sheet 0 INFO [2024-11-20 08:05:38] Plate H0309269D01 read; 384 wells INFO [2024-11-20 08:05:38] File done INFO [2024-11-20 08:05:38] Reading file /home/biocbuild/R/R-4.4.1/site-library/gDRimport/extdata/data4/H0409269D00.csv, sheet 0 INFO [2024-11-20 08:05:38] Plate H0409269D00 read; 384 wells INFO [2024-11-20 08:05:38] File done INFO [2024-11-20 08:05:38] Reading file /home/biocbuild/R/R-4.4.1/site-library/gDRimport/extdata/data4/H0409269D01.csv, sheet 0 INFO [2024-11-20 08:05:38] Plate H0409269D01 read; 384 wells INFO [2024-11-20 08:05:38] File done INFO [2024-11-20 08:05:38] Reading file /home/biocbuild/R/R-4.4.1/site-library/gDRimport/extdata/data4/H0509269D00.csv, sheet 0 INFO [2024-11-20 08:05:38] Plate H0509269D00 read; 384 wells INFO [2024-11-20 08:05:38] File done INFO [2024-11-20 08:05:38] Reading file /home/biocbuild/R/R-4.4.1/site-library/gDRimport/extdata/data4/H0509269D01.csv, sheet 0 INFO [2024-11-20 08:05:38] Plate H0509269D01 read; 384 wells INFO [2024-11-20 08:05:38] File done INFO [2024-11-20 08:05:38] Reading file /home/biocbuild/R/R-4.4.1/site-library/gDRimport/extdata/data4/H0609269D00.csv, sheet 0 INFO [2024-11-20 08:05:38] Plate H0609269D00 read; 384 wells INFO [2024-11-20 08:05:38] File done INFO [2024-11-20 08:05:38] Reading file /home/biocbuild/R/R-4.4.1/site-library/gDRimport/extdata/data4/H0609269D01.csv, sheet 0 INFO [2024-11-20 08:05:38] Plate H0609269D01 read; 384 wells INFO [2024-11-20 08:05:38] File done INFO [2024-11-20 08:05:38] Reading file /home/biocbuild/R/R-4.4.1/site-library/gDRimport/extdata/data4/H0709269D00.csv, sheet 0 INFO [2024-11-20 08:05:38] Plate H0709269D00 read; 384 wells INFO [2024-11-20 08:05:38] File done INFO [2024-11-20 08:05:38] Reading file /home/biocbuild/R/R-4.4.1/site-library/gDRimport/extdata/data4/H0709269D01.csv, sheet 0 INFO [2024-11-20 08:05:38] Plate H0709269D01 read; 384 wells INFO [2024-11-20 08:05:38] File done INFO [2024-11-20 08:05:38] Reading file /home/biocbuild/R/R-4.4.1/site-library/gDRimport/extdata/data4/H0809269D00.csv, sheet 0 INFO [2024-11-20 08:05:38] Plate H0809269D00 read; 384 wells INFO [2024-11-20 08:05:38] File done INFO [2024-11-20 08:05:38] Reading file /home/biocbuild/R/R-4.4.1/site-library/gDRimport/extdata/data4/H0809269D01.csv, sheet 0 INFO [2024-11-20 08:05:38] Plate H0809269D01 read; 384 wells INFO [2024-11-20 08:05:38] File done INFO [2024-11-20 08:05:38] Reading file /home/biocbuild/R/R-4.4.1/site-library/gDRimport/extdata/data4/H0909269D00.csv, sheet 0 INFO [2024-11-20 08:05:38] Plate H0909269D00 read; 384 wells INFO [2024-11-20 08:05:38] File done INFO [2024-11-20 08:05:38] Reading file /home/biocbuild/R/R-4.4.1/site-library/gDRimport/extdata/data4/H0909269D01.csv, sheet 0 INFO [2024-11-20 08:05:38] Plate H0909269D01 read; 384 wells INFO [2024-11-20 08:05:38] File done INFO [2024-11-20 08:05:38] Reading file /home/biocbuild/R/R-4.4.1/site-library/gDRimport/extdata/data4/H1109269D00.csv, sheet 0 INFO [2024-11-20 08:05:38] Plate H1109269D00 read; 384 wells INFO [2024-11-20 08:05:38] File done INFO [2024-11-20 08:05:38] Reading file /home/biocbuild/R/R-4.4.1/site-library/gDRimport/extdata/data4/H1109269D01.csv, sheet 0 INFO [2024-11-20 08:05:38] Plate H1109269D01 read; 384 wells INFO [2024-11-20 08:05:38] File done INFO [2024-11-20 08:05:38] Reading file /home/biocbuild/R/R-4.4.1/site-library/gDRimport/extdata/data4/H1209269D00.csv, sheet 0 INFO [2024-11-20 08:05:38] Plate H1209269D00 read; 384 wells INFO [2024-11-20 08:05:38] File done INFO [2024-11-20 08:05:38] Reading file /home/biocbuild/R/R-4.4.1/site-library/gDRimport/extdata/data4/H1209269D01.csv, sheet 0 INFO [2024-11-20 08:05:38] Plate H1209269D01 read; 384 wells INFO [2024-11-20 08:05:38] File done INFO [2024-11-20 08:05:38] Reading file /home/biocbuild/R/R-4.4.1/site-library/gDRimport/extdata/data4/H1409269D00.csv, sheet 0 INFO [2024-11-20 08:05:38] Plate H1409269D00 read; 384 wells INFO [2024-11-20 08:05:38] File done INFO [2024-11-20 08:05:38] Reading file /home/biocbuild/R/R-4.4.1/site-library/gDRimport/extdata/data4/H1409269D01.csv, sheet 0 INFO [2024-11-20 08:05:38] Plate H1409269D01 read; 384 wells INFO [2024-11-20 08:05:38] File done INFO [2024-11-20 08:05:38] Reading file /home/biocbuild/R/R-4.4.1/site-library/gDRimport/extdata/data4/K0209269D00.csv, sheet 0 INFO [2024-11-20 08:05:39] Plate K0209269D00 read; 384 wells INFO [2024-11-20 08:05:39] File done INFO [2024-11-20 08:05:39] Reading file /home/biocbuild/R/R-4.4.1/site-library/gDRimport/extdata/data4/K0209269D01.csv, sheet 0 INFO [2024-11-20 08:05:39] Plate K0209269D01 read; 384 wells INFO [2024-11-20 08:05:39] File done INFO [2024-11-20 08:05:39] Reading file /home/biocbuild/R/R-4.4.1/site-library/gDRimport/extdata/data4/K0809269D00.csv, sheet 0 INFO [2024-11-20 08:05:39] Plate K0809269D00 read; 384 wells INFO [2024-11-20 08:05:39] File done INFO [2024-11-20 08:05:39] Reading file /home/biocbuild/R/R-4.4.1/site-library/gDRimport/extdata/data4/K0809269D01.csv, sheet 0 INFO [2024-11-20 08:05:39] Plate K0809269D01 read; 384 wells INFO [2024-11-20 08:05:39] File done INFO [2024-11-20 08:05:39] Reading file /home/biocbuild/R/R-4.4.1/site-library/gDRimport/extdata/data4/K1009269D00.csv, sheet 0 INFO [2024-11-20 08:05:39] Plate K1009269D00 read; 384 wells INFO [2024-11-20 08:05:39] File done INFO [2024-11-20 08:05:39] Reading file /home/biocbuild/R/R-4.4.1/site-library/gDRimport/extdata/data4/K1009269D01.csv, sheet 0 INFO [2024-11-20 08:05:39] Plate K1009269D01 read; 384 wells INFO [2024-11-20 08:05:39] File done INFO [2024-11-20 08:05:39] Manifest loaded successfully INFO [2024-11-20 08:05:39] Reading Template_7daytreated.xlsx with load_templates_xlsx INFO [2024-11-20 08:05:39] Loading Template_7daytreated.xlsx INFO [2024-11-20 08:05:39] Loading Template_Untreated.xlsx INFO [2024-11-20 08:05:39] Templates loaded successfully! INFO [2024-11-20 08:05:39] Manifest loaded successfully INFO [2024-11-20 08:05:39] Reading Template_7daytreated.xlsx with load_templates_xlsx INFO [2024-11-20 08:05:39] Loading Template_7daytreated.xlsx INFO [2024-11-20 08:05:39] Loading Template_Untreated.xlsx INFO [2024-11-20 08:05:40] Templates loaded successfully! INFO [2024-11-20 08:05:40] Manifest loaded successfully INFO [2024-11-20 08:05:40] Reading Template_trt.tsv with load_templates_tsv INFO [2024-11-20 08:05:40] Loading Template_trt.tsv INFO [2024-11-20 08:05:40] Loading Template_untrt.tsv INFO [2024-11-20 08:05:40] Templates loaded successfully! INFO [2024-11-20 08:05:40] Reading file /home/biocbuild/R/R-4.4.1/site-library/gDRimport/extdata/data5/RawData.tsv WARN [2024-11-20 08:05:42] Metadata field names for cannot contain spaces --> corrected to: Gnumber WARN [2024-11-20 08:05:42] Header Gnumber in corrected to Gnumber [ FAIL 0 | WARN 0 | SKIP 0 | PASS 141 ] > > > proc.time() user system elapsed 61.736 2.094 63.957
gDRimport.Rcheck/gDRimport-Ex.timings
name | user | system | elapsed | |
check_metadata_names | 0.081 | 0.000 | 0.084 | |
convert_LEVEL5_prism_to_gDR_input | 0.016 | 0.000 | 0.017 | |
convert_LEVEL6_prism_to_gDR_input | 0.018 | 0.000 | 0.019 | |
convert_MAE_to_PSet | 9.537 | 0.299 | 9.939 | |
convert_pset_to_df | 0.149 | 0.035 | 0.189 | |
detect_file_format | 0.376 | 0.016 | 0.396 | |
getPSet | 0.159 | 0.004 | 0.163 | |
get_exception_data | 0.008 | 0.000 | 0.008 | |
get_test_D300_data | 0.001 | 0.000 | 0.001 | |
get_test_EnVision_data | 0.002 | 0.000 | 0.002 | |
get_test_Tecan_data | 0.001 | 0.000 | 0.001 | |
get_test_data | 0.004 | 0.000 | 0.003 | |
get_test_tsv_data | 0.002 | 0.000 | 0.001 | |
import_D300 | 3.453 | 0.132 | 3.601 | |
is_readable_v | 0.001 | 0.000 | 0.001 | |
load_data | 1.591 | 0.020 | 1.627 | |
load_manifest | 0.055 | 0.000 | 0.056 | |
load_results | 1.379 | 0.016 | 1.396 | |
load_templates | 0.241 | 0.020 | 0.261 | |
manifest_path-method | 0.003 | 0.000 | 0.003 | |
parse_D300_xml | 1.534 | 0.048 | 1.584 | |
read_excel_to_dt | 0.016 | 0.004 | 0.025 | |
result_path-method | 0.002 | 0.000 | 0.003 | |
setEnvForPSet | 0.001 | 0.000 | 0.001 | |
standardize_record_values | 0.000 | 0.000 | 0.001 | |
template_path-method | 0.002 | 0.000 | 0.002 | |