Multiple platform build/check report for BioC 3.21 - BUILD results for flowTime on kjohnson1

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.3 LTS)	x86_64	4.5.1 (2025-06-13) -- "Great Square Root"	4827
merida1	macOS 12.7.5 Monterey	x86_64	4.5.1 RC (2025-06-05 r88288) -- "Great Square Root"	4608
kjohnson1	macOS 13.6.6 Ventura	arm64	4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root"	4549
kunpeng2	Linux (openEuler 24.03 LTS)	aarch64	R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences"	4581
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for flowTime on kjohnson1

To the developers/maintainers of the flowTime package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/flowTime.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: flowTime

Version: 1.32.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data flowTime

StartedAt: 2025-09-16 00:28:58 -0400 (Tue, 16 Sep 2025)

EndedAt: 2025-09-16 00:29:22 -0400 (Tue, 16 Sep 2025)

EllapsedTime: 24.0 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data flowTime
###
##############################################################################
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* checking for file ‘flowTime/DESCRIPTION’ ... OK
* preparing ‘flowTime’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘gating-vignette.Rmd’ using rmarkdown

Quitting from gating-vignette.Rmd:52-54 [unnamed-chunk-4]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `add_ggcyto()`:
! object '+.gg' not found
---
Backtrace:
     ▆
  1. ├─ggplot2::autoplot(data[21:24], x = "FSC-A", y = "SSC-A")
  2. └─ggcyto:::autoplot.flowSet(data[21:24], x = "FSC-A", y = "SSC-A")
  3.   ├─ggcyto::ggcyto(...)
  4.   └─ggcyto:::ggcyto.flowSet(...)
  5.     ├─p + ggcyto_par_default()
  6.     └─p + ggcyto_par_default()
  7.       └─ggcyto:::add_ggcyto(e1, e2, e2name)
  8.         ├─e1 + e2.new
  9.         └─e1 + e2.new
 10.           └─ggcyto:::add_ggcyto(e1, e2, e2name)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'gating-vignette.Rmd' failed with diagnostics:
object '+.gg' not found
--- failed re-building ‘gating-vignette.Rmd’

--- re-building ‘steady-state-vignette.Rmd’ using rmarkdown
2025-09-16 00:29:17.104 R[92370:377009676] XType: Using static font registry.
--- finished re-building ‘steady-state-vignette.Rmd’

--- re-building ‘time-course-vignette.Rmd’ using rmarkdown
--- finished re-building ‘time-course-vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘gating-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted