##############################################################################
##############################################################################
###
### Running command:
###
###   F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL flowMatch
###
##############################################################################
##############################################################################


* installing to library 'F:/biocbuild/bbs-3.20-bioc/R/library'
* installing *source* package 'flowMatch' ...
** using staged installation
** libs
using C++ compiler: 'G__~1.EXE (GCC) 13.2.0'
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.20-bioc/R/library/Rcpp/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c BipartiteGraph.cpp -o BipartiteGraph.o
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.20-bioc/R/library/Rcpp/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c MinWghtEdgCoverBipartite.cpp -o MinWghtEdgCoverBipartite.o
MinWghtEdgCoverBipartite.cpp: In function 'void update_height(mclust&, std::vector<std::vector<templatePair> >, std::vector<std::vector<BipartiteGraph> >, double)':
MinWghtEdgCoverBipartite.cpp:271:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
  271 |         for(int i=0; i<tree.height.size(); i++)
      |                      ~^~~~~~~~~~~~~~~~~~~
MinWghtEdgCoverBipartite.cpp: In function 'void computeDegConsistencyNew(std::vector<std::vector<templatePair> >&, std::vector<std::vector<BipartiteGraph> >&, double, double)':
MinWghtEdgCoverBipartite.cpp:487:45: warning: variable 'delta_cx_cy' set but not used [-Wunused-but-set-variable]
  487 |                                         int delta_cx_cy  = 0;
      |                                             ^~~~~~~~~~~
MinWghtEdgCoverBipartite.cpp: In function 'classTemplate buildTemplate(std::vector<std::vector<templatePair> >&, double, mclust&)':
MinWghtEdgCoverBipartite.cpp:792:54: warning: 'template1' may be used uninitialized [-Wmaybe-uninitialized]
  792 |                 mergeTemplate(templatePairs[template1][template2], template1, template2,mergedTemplate, curIndex+1 );
      |                                                      ^
MinWghtEdgCoverBipartite.cpp:787:21: note: 'template1' was declared here
  787 |                 int template1, template2;
      |                     ^~~~~~~~~
MinWghtEdgCoverBipartite.cpp:792:65: warning: 'template2' may be used uninitialized [-Wmaybe-uninitialized]
  792 |                 mergeTemplate(templatePairs[template1][template2], template1, template2,mergedTemplate, curIndex+1 );
      |                                                                 ^
MinWghtEdgCoverBipartite.cpp:787:32: note: 'template2' was declared here
  787 |                 int template1, template2;
      |                                ^~~~~~~~~
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.20-bioc/R/library/Rcpp/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c flowMatch.cpp -o flowMatch.o
flowMatch.cpp: In function 'Rcpp::List computeMEC(Rcpp::NumericMatrix, double)':
flowMatch.cpp:43:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<int> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
   43 |         for(int i=0; i<mec.sCoverVecVec.size(); i++)
      |                      ~^~~~~~~~~~~~~~~~~~~~~~~~
flowMatch.cpp:45:31: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
   45 |                 for(int j=0; j<mec.sCoverVecVec[i].size(); j++)
      |                              ~^~~~~~~~~~~~~~~~~~~~~~~~~~~
flowMatch.cpp:53:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<int> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
   53 |         for(int i=0; i<mec.tCoverVecVec.size(); i++)
      |                      ~^~~~~~~~~~~~~~~~~~~~~~~~
flowMatch.cpp:55:31: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
   55 |                 for(int j=0; j<mec.tCoverVecVec[i].size(); j++)
      |                              ~^~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -std=gnu++17 -shared -s -static-libgcc -o flowMatch.dll tmp.def BipartiteGraph.o MinWghtEdgCoverBipartite.o flowMatch.o -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.20-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.20-bioc/R/library/00LOCK-flowMatch/00new/flowMatch/libs/x64
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (flowMatch)