Multiple platform build/check report for BioC 3.21 - BUILD results for flowGate on kjohnson1

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.3 LTS)	x86_64	4.5.1 (2025-06-13) -- "Great Square Root"	4827
merida1	macOS 12.7.5 Monterey	x86_64	4.5.1 RC (2025-06-05 r88288) -- "Great Square Root"	4608
kjohnson1	macOS 13.6.6 Ventura	arm64	4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root"	4549
kunpeng2	Linux (openEuler 24.03 LTS)	aarch64	R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences"	4581
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for flowGate on kjohnson1

To the developers/maintainers of the flowGate package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/flowGate.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: flowGate

Version: 1.8.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data flowGate

StartedAt: 2025-09-16 00:26:47 -0400 (Tue, 16 Sep 2025)

EndedAt: 2025-09-16 00:27:12 -0400 (Tue, 16 Sep 2025)

EllapsedTime: 25.1 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data flowGate
###
##############################################################################
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* checking for file ‘flowGate/DESCRIPTION’ ... OK
* preparing ‘flowGate’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘flowGate.Rmd’ using rmarkdown

Quitting from flowGate.Rmd:481-483 [unnamed-chunk-10]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `add_ggcyto()`:
! object '+.gg' not found
---
Backtrace:
     ▆
  1. ├─ggplot2::autoplot(gs[[1]], gate = "Leukocytes")
  2. └─ggcyto:::autoplot.GatingHierarchy(gs[[1]], gate = "Leukocytes")
  3.   ├─BiocGenerics::lapply(...)
  4.   └─base::lapply(...)
  5.     └─ggcyto (local) FUN(X[[i]], ...)
  6.       └─ggcyto:::autoplot.GatingSet(object, gate, y = y, ...)
  7.         ├─ggcyto::ggcyto(object, mapping, ...)
  8.         └─ggcyto:::ggcyto.GatingHierarchy(object, mapping, ...)
  9.           ├─ggcyto::ggcyto(data, ...)
 10.           └─ggcyto:::ggcyto.GatingSet(data, ...)
 11.             └─ggcyto:::ggcyto.flowSet(data = data, mapping = mapping, ...)
 12.               ├─p + ggcyto_par_default()
 13.               └─p + ggcyto_par_default()
 14.                 └─ggcyto:::add_ggcyto(e1, e2, e2name)
 15.                   ├─e1 + e2.new
 16.                   └─e1 + e2.new
 17.                     └─ggcyto:::add_ggcyto(e1, e2, e2name)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'flowGate.Rmd' failed with diagnostics:
object '+.gg' not found
--- failed re-building ‘flowGate.Rmd’

SUMMARY: processing the following file failed:
  ‘flowGate.Rmd’

Error: Vignette re-building failed.
Execution halted