Multiple platform build/check report for BioC 3.20 - CHECK results for flowClust on merida1

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 24.04.1 LTS)	x86_64	4.4.2 (2024-10-31) -- "Pile of Leaves"	4744
palomino8	Windows Server 2022 Datacenter	x64	4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves"	4487
merida1	macOS 12.7.5 Monterey	x86_64	4.4.2 (2024-10-31) -- "Pile of Leaves"	4515
kjohnson1	macOS 13.6.6 Ventura	arm64	4.4.2 (2024-10-31) -- "Pile of Leaves"	4467
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

CHECK results for flowClust on merida1

To the developers/maintainers of the flowClust package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/flowClust.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: flowClust

Version: 3.44.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:flowClust.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings flowClust_3.44.0.tar.gz

StartedAt: 2024-12-20 03:29:18 -0500 (Fri, 20 Dec 2024)

EndedAt: 2024-12-20 03:37:44 -0500 (Fri, 20 Dec 2024)

EllapsedTime: 505.5 seconds

RetCode: 0

Status: WARNINGS

CheckDir: flowClust.Rcheck

Warnings: 2

Command output

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###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:flowClust.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings flowClust_3.44.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.20-bioc/meat/flowClust.Rcheck’
* using R version 4.4.2 (2024-10-31)
* using platform: x86_64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.7.6
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘flowClust/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘flowClust’ version ‘3.44.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘flowClust’ can be installed ... WARNING
Found the following significant warnings:
  coulomb.c:994:17: warning: variable 'G_lam_G' is uninitialized when used here [-Wuninitialized]
  coulomb.c:996:17: warning: variable 'Gp_lam_G' is uninitialized when used here [-Wuninitialized]
  exp.c:216:83: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value]
  gamma.c:1614:54: warning: taking the absolute value of unsigned type 'unsigned int' has no effect [-Wabsolute-value]
  hyperg_1F1.c:1003:44: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value]
  hyperg_1F1.c:1034:45: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value]
  hyperg_1F1.c:1057:24: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value]
  hyperg_1F1.c:1086:40: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value]
  hyperg_1F1.c:1113:22: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value]
  hyperg_1F1.c:1169:22: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value]
  hyperg_1F1.c:1813:41: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value]
  hyperg_1F1.c:1813:68: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value]
  hyperg_1F1.c:1817:41: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value]
  hyperg_1F1.c:1817:66: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value]
  hyperg_U.c:285:38: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value]
  hyperg_U.c:527:13: warning: 'finite' is deprecated: first deprecated in macOS 10.9 - Use `isfinite((double)x)` instead. [-Wdeprecated-declarations]
  hyperg_U.c:861:45: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value]
  hyperg_U.c:871:11: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value]
  hyperg_U.c:881:11: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value]
  hyperg_U.c:913:38: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value]
  hyperg_U.c:947:39: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value]
  hyperg_U.c:998:35: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value]
  hyperg_U.c:1042:48: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value]
  hyperg_U.c:1108:49: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value]
  hyperg_U.c:1439:57: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value]
  hyperg_U.c:1512:52: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value]
  legendre_poly.c:544:67: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value]
  legendre_poly.c:582:93: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value]
  poch.c:164:46: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value]
  poch.c:179:47: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value]
  ./absdev_source.c:41:28: warning: absolute value function 'fabs' given an argument of type 'long double' but has parameter of type 'double' which may cause truncation of value [-Wabsolute-value]
  ./wabsdev_source.c:43:35: warning: absolute value function 'fabs' given an argument of type 'long double' but has parameter of type 'double' which may cause truncation of value [-Wabsolute-value]
  ldfrexp.c:63:13: warning: 'finite' is deprecated: first deprecated in macOS 10.9 - Use `isfinite((double)x)` instead. [-Wdeprecated-declarations]
  ldfrexp.c:88:12: warning: 'finite' is deprecated: first deprecated in macOS 10.9 - Use `isfinite((double)x)` instead. [-Wdeprecated-declarations]
See ‘/Users/biocbuild/bbs-3.20-bioc/meat/flowClust.Rcheck/00install.out’ for details.
* used C compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
* used SDK: ‘MacOSX11.3.sdk’
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
License components which are templates and need '+ file LICENSE':
  MIT
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... NOTE
Problems with news in ‘NEWS’:
  Cannot process chunk/lines:
    BUG FIXES
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
.flowClustK: no visible global function definition for ‘var’
.flowClustK: no visible global function definition for ‘qf’
.flowClustK: no visible global function definition for ‘qchisq’
.flowClustK: no visible global function definition for ‘quantile’
.flowClustK: no visible global function definition for ‘kmeans’
.hist.flowClust: no visible global function definition for ‘hist’
dmvt: no visible global function definition for ‘mahalanobis’
hist.flowClust: no visible global function definition for ‘hist’
hist.flowClust: no visible global function definition for ‘curve’
hist.flowClust: no visible global function definition for ‘stripchart’
hist.flowClustList: no visible global function definition for ‘hist’
plot,flowClust-missing: no visible global function definition for
  ‘gray’
plot,flowClust-missing: no visible global function definition for
  ‘hist’
plot,flowClust-missing: no visible global function definition for
  ‘title’
plot,flowClust-missing: no visible global function definition for
  ‘points’
plot,flowClust-missing: no visible global function definition for ‘qf’
plot,flowClust-missing: no visible global function definition for
  ‘qchisq’
plot,flowClustList-missing: no visible global function definition for
  ‘gray’
plot,flowDens-missing: no visible global function definition for
  ‘contour’
plot,flowDens-missing: no visible global function definition for
  ‘heat.colors’
plot,flowDens-missing: no visible global function definition for
  ‘rainbow’
plot,flowDens-missing: no visible global function definition for
  ‘terrain.colors’
plot,flowDens-missing: no visible global function definition for
  ‘topo.colors’
plot,flowDens-missing: no visible global function definition for
  ‘cm.colors’
plot,flowDens-missing: no visible global function definition for ‘gray’
plot,flowDens-missing: no visible global function definition for
  ‘image’
plot,flowFrame-tmixFilterResult: no visible global function definition
  for ‘hist’
ruleOutliers<-,flowClust-list: no visible global function definition
  for ‘qf’
ruleOutliers<-,flowClust-list: no visible global function definition
  for ‘qchisq’
Undefined global functions or variables:
  cm.colors contour curve gray heat.colors hist image kmeans
  mahalanobis points qchisq qf quantile rainbow stripchart
  terrain.colors title topo.colors var
Consider adding
  importFrom("grDevices", "cm.colors", "gray", "heat.colors", "rainbow",
             "terrain.colors", "topo.colors")
  importFrom("graphics", "contour", "curve", "hist", "image", "points",
             "stripchart", "title")
  importFrom("stats", "kmeans", "mahalanobis", "qchisq", "qf",
             "quantile", "var")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... WARNING
Missing link or links in Rd file 'flowClust.Rd':
  ‘SimulateMixture’

See section 'Cross-references' in the 'Writing R Extensions' manual.
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in shell scripts ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... NOTE
GNU make is a SystemRequirements.
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
File ‘/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/flowClust/libs/flowClust.so’:
  Found ‘___stderrp’, possibly from ‘stderr’ (C)
  Found ‘___stdoutp’, possibly from ‘stdout’ (C)
  Found ‘_abort’, possibly from ‘abort’ (C)
  Found ‘_printf’, possibly from ‘printf’ (C)

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf. The detected symbols are linked into
the code but might come from libraries and not actually be called.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 WARNINGs, 5 NOTEs
See
  ‘/Users/biocbuild/bbs-3.20-bioc/meat/flowClust.Rcheck/00check.log’
for details.

Installation output

flowClust.Rcheck/00install.out

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###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL flowClust
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library’
* installing *source* package ‘flowClust’ ...
** using staged installation
configure: Using bundled GSL.
configure: Searching for the compilers specified by R.
checking for gcc... clang -arch x86_64
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether clang -arch x86_64 accepts -g... yes
checking for clang -arch x86_64 option to accept ISO C89... none needed
checking how to run the C preprocessor... clang -arch x86_64 -E
untarring gsl...
configure: Preparing to compile GSL.
configure: Configuring bundled GSL.
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... ./install-sh -c -d
checking for gawk... no
checking for mawk... no
checking for nawk... no
checking for awk... awk
checking whether make sets $(MAKE)... yes
checking whether to enable maintainer-specific portions of Makefiles... no
checking whether make sets $(MAKE)... (cached) yes
checking build system type... x86_64-apple-darwin21.6.0
checking host system type... x86_64-apple-darwin21.6.0
checking for gcc... clang -arch x86_64
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether clang -arch x86_64 accepts -g... yes
checking for clang -arch x86_64 option to accept ISO C89... none needed
checking how to run the C preprocessor... clang -arch x86_64 -E
checking whether ln -s works... yes
checking for a sed that does not truncate output... /usr/bin/sed
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for fgrep... /usr/bin/grep -F
checking for ld used by clang -arch x86_64... /Library/Developer/CommandLineTools/usr/bin/ld
checking if the linker (/Library/Developer/CommandLineTools/usr/bin/ld) is GNU ld... no
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... rm: conftest.dSYM: is a directory
BSD nm
checking the maximum length of command line arguments... 786432
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking for /Library/Developer/CommandLineTools/usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for ar... ar
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from clang -arch x86_64 object... rm: conftest.dSYM: is a directory
ok
checking for dsymutil... dsymutil
checking for nmedit... nmedit
checking for lipo... lipo
checking for otool... otool
checking for otool64... no
checking for -single_module linker flag... yes
checking for -exported_symbols_list linker flag... yes
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if clang -arch x86_64 supports -fno-rtti -fno-exceptions... yes
checking for clang -arch x86_64 option to produce PIC... -fno-common -DPIC
checking if clang -arch x86_64 PIC flag -fno-common -DPIC works... yes
checking if clang -arch x86_64 static flag -static works... no
checking if clang -arch x86_64 supports -c -o file.o... yes
checking if clang -arch x86_64 supports -c -o file.o... (cached) yes
checking whether the clang -arch x86_64 linker (/Library/Developer/CommandLineTools/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... darwin21.6.0 dyld
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking for size_t... yes
checking for working volatile... yes
checking for inline... inline
checking whether char is unsigned... no
checking for GNU-style extern inline... no
checking for C99-style inline... yes
checking ieeefp.h usability... no
checking ieeefp.h presence... no
checking for ieeefp.h... no
checking for vprintf... yes
checking for _doprnt... no
checking for memcpy... yes
checking for memmove... yes
checking for strdup... yes
checking for strtol... yes
checking for strtoul... yes
checking for EXIT_SUCCESS and EXIT_FAILURE... yes
checking for cos in -lm... yes
checking whether feenableexcept is declared... no
checking whether fesettrapenable is declared... no
checking whether hypot is declared... yes
checking whether expm1 is declared... yes
checking whether acosh is declared... yes
checking whether asinh is declared... yes
checking whether atanh is declared... yes
checking whether ldexp is declared... yes
checking whether frexp is declared... yes
checking whether isinf is declared... yes
checking whether isfinite is declared... yes
checking whether finite is declared... yes
checking whether isnan is declared... yes
checking whether log1p is declared... yes
checking for long double stdio... yes
checking for extended floating point registers... yes
checking for IEEE arithmetic interface type... unknown
checking for IEEE compiler flags... none
checking for IEEE comparisons... no
checking for IEEE denormalized values... no
configure: creating ./config.status
config.status: creating gsl_version.h
config.status: creating gsl.spec
config.status: creating gsl/Makefile
config.status: creating block/Makefile
config.status: creating matrix/Makefile
config.status: creating vector/Makefile
config.status: creating rng/Makefile
config.status: creating randist/Makefile
config.status: creating cdf/Makefile
config.status: creating cblas/Makefile
config.status: creating specfunc/Makefile
config.status: creating linalg/Makefile
config.status: creating statistics/Makefile
config.status: creating blas/Makefile
config.status: creating roots/Makefile
config.status: creating err/Makefile
config.status: creating min/Makefile
config.status: creating permutation/Makefile
config.status: creating complex/Makefile
config.status: creating sys/Makefile
config.status: creating eigen/Makefile
config.status: creating Makefile
config.status: creating config.h
config.status: executing libtool commands
Making install in gsl
make[2]: Nothing to be done for `install-exec-am'.
make[2]: Nothing to be done for `install-data-am'.
Making install in block
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o init.lo init.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c init.c  -fno-common -DPIC -o .libs/init.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o file.lo file.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c file.c  -fno-common -DPIC -o .libs/file.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o block.lo block.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c block.c  -fno-common -DPIC -o .libs/block.o
/bin/sh ../libtool --tag=CC   --mode=link clang -arch x86_64  -falign-functions=64 -Wall -g -O2  -L/opt/R/x86_64/lib -o libgslblock.la  init.lo file.lo block.lo  -lm 
libtool: link: ar cru .libs/libgslblock.a .libs/init.o .libs/file.o .libs/block.o 
libtool: link: ranlib .libs/libgslblock.a
libtool: link: ( cd ".libs" && rm -f "libgslblock.la" && ln -s "../libgslblock.la" "libgslblock.la" )
make[2]: Nothing to be done for `install-exec-am'.
test -z "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl" || .././install-sh -c -d "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl"
 /usr/bin/install -c -m 644 gsl_block.h gsl_block_char.h gsl_block_complex_double.h gsl_block_complex_float.h gsl_block_complex_long_double.h gsl_block_double.h gsl_block_float.h gsl_block_int.h gsl_block_long.h gsl_block_long_double.h gsl_block_short.h gsl_block_uchar.h gsl_block_uint.h gsl_block_ulong.h gsl_block_ushort.h gsl_check_range.h '/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl'
Making install in matrix
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o init.lo init.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c init.c  -fno-common -DPIC -o .libs/init.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o matrix.lo matrix.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c matrix.c  -fno-common -DPIC -o .libs/matrix.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o file.lo file.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c file.c  -fno-common -DPIC -o .libs/file.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o rowcol.lo rowcol.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c rowcol.c  -fno-common -DPIC -o .libs/rowcol.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o swap.lo swap.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c swap.c  -fno-common -DPIC -o .libs/swap.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o copy.lo copy.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c copy.c  -fno-common -DPIC -o .libs/copy.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o minmax.lo minmax.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c minmax.c  -fno-common -DPIC -o .libs/minmax.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o prop.lo prop.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c prop.c  -fno-common -DPIC -o .libs/prop.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o oper.lo oper.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c oper.c  -fno-common -DPIC -o .libs/oper.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o getset.lo getset.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c getset.c  -fno-common -DPIC -o .libs/getset.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o view.lo view.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c view.c  -fno-common -DPIC -o .libs/view.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o submatrix.lo submatrix.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c submatrix.c  -fno-common -DPIC -o .libs/submatrix.o
/bin/sh ../libtool --tag=CC   --mode=link clang -arch x86_64  -falign-functions=64 -Wall -g -O2  -L/opt/R/x86_64/lib -o libgslmatrix.la  init.lo matrix.lo file.lo rowcol.lo swap.lo copy.lo minmax.lo prop.lo oper.lo getset.lo view.lo submatrix.lo  -lm 
libtool: link: ar cru .libs/libgslmatrix.a .libs/init.o .libs/matrix.o .libs/file.o .libs/rowcol.o .libs/swap.o .libs/copy.o .libs/minmax.o .libs/prop.o .libs/oper.o .libs/getset.o .libs/view.o .libs/submatrix.o 
libtool: link: ranlib .libs/libgslmatrix.a
libtool: link: ( cd ".libs" && rm -f "libgslmatrix.la" && ln -s "../libgslmatrix.la" "libgslmatrix.la" )
make[2]: Nothing to be done for `install-exec-am'.
test -z "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl" || .././install-sh -c -d "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl"
 /usr/bin/install -c -m 644 gsl_matrix.h gsl_matrix_char.h gsl_matrix_complex_double.h gsl_matrix_complex_float.h gsl_matrix_complex_long_double.h gsl_matrix_double.h gsl_matrix_float.h gsl_matrix_int.h gsl_matrix_long.h gsl_matrix_long_double.h gsl_matrix_short.h gsl_matrix_uchar.h gsl_matrix_uint.h gsl_matrix_ulong.h gsl_matrix_ushort.h '/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl'
Making install in vector
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o init.lo init.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c init.c  -fno-common -DPIC -o .libs/init.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o file.lo file.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c file.c  -fno-common -DPIC -o .libs/file.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o vector.lo vector.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c vector.c  -fno-common -DPIC -o .libs/vector.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o copy.lo copy.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c copy.c  -fno-common -DPIC -o .libs/copy.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o swap.lo swap.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c swap.c  -fno-common -DPIC -o .libs/swap.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o prop.lo prop.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c prop.c  -fno-common -DPIC -o .libs/prop.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o minmax.lo minmax.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c minmax.c  -fno-common -DPIC -o .libs/minmax.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o oper.lo oper.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c oper.c  -fno-common -DPIC -o .libs/oper.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o reim.lo reim.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c reim.c  -fno-common -DPIC -o .libs/reim.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o subvector.lo subvector.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c subvector.c  -fno-common -DPIC -o .libs/subvector.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o view.lo view.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c view.c  -fno-common -DPIC -o .libs/view.o
/bin/sh ../libtool --tag=CC   --mode=link clang -arch x86_64  -falign-functions=64 -Wall -g -O2  -L/opt/R/x86_64/lib -o libgslvector.la  init.lo file.lo vector.lo copy.lo swap.lo prop.lo minmax.lo oper.lo reim.lo subvector.lo view.lo  -lm 
libtool: link: ar cru .libs/libgslvector.a .libs/init.o .libs/file.o .libs/vector.o .libs/copy.o .libs/swap.o .libs/prop.o .libs/minmax.o .libs/oper.o .libs/reim.o .libs/subvector.o .libs/view.o 
libtool: link: ranlib .libs/libgslvector.a
libtool: link: ( cd ".libs" && rm -f "libgslvector.la" && ln -s "../libgslvector.la" "libgslvector.la" )
make[2]: Nothing to be done for `install-exec-am'.
test -z "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl" || .././install-sh -c -d "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl"
 /usr/bin/install -c -m 644 gsl_vector.h gsl_vector_char.h gsl_vector_complex.h gsl_vector_complex_double.h gsl_vector_complex_float.h gsl_vector_complex_long_double.h gsl_vector_double.h gsl_vector_float.h gsl_vector_int.h gsl_vector_long.h gsl_vector_long_double.h gsl_vector_short.h gsl_vector_uchar.h gsl_vector_uint.h gsl_vector_ulong.h gsl_vector_ushort.h '/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl'
Making install in rng
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o borosh13.lo borosh13.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c borosh13.c  -fno-common -DPIC -o .libs/borosh13.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o cmrg.lo cmrg.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c cmrg.c  -fno-common -DPIC -o .libs/cmrg.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o coveyou.lo coveyou.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c coveyou.c  -fno-common -DPIC -o .libs/coveyou.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o default.lo default.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c default.c  -fno-common -DPIC -o .libs/default.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o file.lo file.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c file.c  -fno-common -DPIC -o .libs/file.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o fishman18.lo fishman18.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c fishman18.c  -fno-common -DPIC -o .libs/fishman18.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o fishman20.lo fishman20.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c fishman20.c  -fno-common -DPIC -o .libs/fishman20.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o fishman2x.lo fishman2x.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c fishman2x.c  -fno-common -DPIC -o .libs/fishman2x.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o gfsr4.lo gfsr4.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c gfsr4.c  -fno-common -DPIC -o .libs/gfsr4.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o knuthran2.lo knuthran2.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c knuthran2.c  -fno-common -DPIC -o .libs/knuthran2.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o knuthran.lo knuthran.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c knuthran.c  -fno-common -DPIC -o .libs/knuthran.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o knuthran2002.lo knuthran2002.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c knuthran2002.c  -fno-common -DPIC -o .libs/knuthran2002.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o lecuyer21.lo lecuyer21.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c lecuyer21.c  -fno-common -DPIC -o .libs/lecuyer21.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o minstd.lo minstd.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c minstd.c  -fno-common -DPIC -o .libs/minstd.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o mrg.lo mrg.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c mrg.c  -fno-common -DPIC -o .libs/mrg.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o mt.lo mt.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c mt.c  -fno-common -DPIC -o .libs/mt.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o r250.lo r250.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c r250.c  -fno-common -DPIC -o .libs/r250.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o ran0.lo ran0.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c ran0.c  -fno-common -DPIC -o .libs/ran0.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o ran1.lo ran1.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c ran1.c  -fno-common -DPIC -o .libs/ran1.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o ran2.lo ran2.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c ran2.c  -fno-common -DPIC -o .libs/ran2.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o ran3.lo ran3.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c ran3.c  -fno-common -DPIC -o .libs/ran3.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o rand48.lo rand48.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c rand48.c  -fno-common -DPIC -o .libs/rand48.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o rand.lo rand.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c rand.c  -fno-common -DPIC -o .libs/rand.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o random.lo random.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c random.c  -fno-common -DPIC -o .libs/random.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o randu.lo randu.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c randu.c  -fno-common -DPIC -o .libs/randu.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o ranf.lo ranf.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c ranf.c  -fno-common -DPIC -o .libs/ranf.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o ranlux.lo ranlux.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c ranlux.c  -fno-common -DPIC -o .libs/ranlux.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o ranlxd.lo ranlxd.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c ranlxd.c  -fno-common -DPIC -o .libs/ranlxd.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o ranlxs.lo ranlxs.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c ranlxs.c  -fno-common -DPIC -o .libs/ranlxs.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o ranmar.lo ranmar.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c ranmar.c  -fno-common -DPIC -o .libs/ranmar.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o rng.lo rng.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c rng.c  -fno-common -DPIC -o .libs/rng.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o slatec.lo slatec.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c slatec.c  -fno-common -DPIC -o .libs/slatec.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o taus.lo taus.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c taus.c  -fno-common -DPIC -o .libs/taus.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o taus113.lo taus113.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c taus113.c  -fno-common -DPIC -o .libs/taus113.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o transputer.lo transputer.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c transputer.c  -fno-common -DPIC -o .libs/transputer.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o tt.lo tt.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c tt.c  -fno-common -DPIC -o .libs/tt.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o types.lo types.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c types.c  -fno-common -DPIC -o .libs/types.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o uni32.lo uni32.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c uni32.c  -fno-common -DPIC -o .libs/uni32.o
uni32.c:108:32: warning: unused variable 'MDIG' [-Wunused-const-variable]
static const unsigned long int MDIG = 32;       /* Machine digits in int */
                               ^
1 warning generated.
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o uni.lo uni.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c uni.c  -fno-common -DPIC -o .libs/uni.o
uni.c:108:27: warning: unused variable 'MDIG' [-Wunused-const-variable]
static const unsigned int MDIG = 16;    /* Machine digits in int */
                          ^
1 warning generated.
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o vax.lo vax.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c vax.c  -fno-common -DPIC -o .libs/vax.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o waterman14.lo waterman14.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c waterman14.c  -fno-common -DPIC -o .libs/waterman14.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o zuf.lo zuf.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c zuf.c  -fno-common -DPIC -o .libs/zuf.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o inline.lo inline.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c inline.c  -fno-common -DPIC -o .libs/inline.o
/bin/sh ../libtool --tag=CC   --mode=link clang -arch x86_64  -falign-functions=64 -Wall -g -O2  -L/opt/R/x86_64/lib -o libgslrng.la  borosh13.lo cmrg.lo coveyou.lo default.lo file.lo fishman18.lo fishman20.lo fishman2x.lo gfsr4.lo knuthran2.lo knuthran.lo knuthran2002.lo lecuyer21.lo minstd.lo mrg.lo mt.lo r250.lo ran0.lo ran1.lo ran2.lo ran3.lo rand48.lo rand.lo random.lo randu.lo ranf.lo ranlux.lo ranlxd.lo ranlxs.lo ranmar.lo rng.lo slatec.lo taus.lo taus113.lo transputer.lo tt.lo types.lo uni32.lo uni.lo vax.lo waterman14.lo zuf.lo inline.lo  -lm 
libtool: link: ar cru .libs/libgslrng.a .libs/borosh13.o .libs/cmrg.o .libs/coveyou.o .libs/default.o .libs/file.o .libs/fishman18.o .libs/fishman20.o .libs/fishman2x.o .libs/gfsr4.o .libs/knuthran2.o .libs/knuthran.o .libs/knuthran2002.o .libs/lecuyer21.o .libs/minstd.o .libs/mrg.o .libs/mt.o .libs/r250.o .libs/ran0.o .libs/ran1.o .libs/ran2.o .libs/ran3.o .libs/rand48.o .libs/rand.o .libs/random.o .libs/randu.o .libs/ranf.o .libs/ranlux.o .libs/ranlxd.o .libs/ranlxs.o .libs/ranmar.o .libs/rng.o .libs/slatec.o .libs/taus.o .libs/taus113.o .libs/transputer.o .libs/tt.o .libs/types.o .libs/uni32.o .libs/uni.o .libs/vax.o .libs/waterman14.o .libs/zuf.o .libs/inline.o 
libtool: link: ranlib .libs/libgslrng.a
libtool: link: ( cd ".libs" && rm -f "libgslrng.la" && ln -s "../libgslrng.la" "libgslrng.la" )
make[2]: Nothing to be done for `install-exec-am'.
test -z "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl" || .././install-sh -c -d "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl"
 /usr/bin/install -c -m 644 gsl_rng.h '/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl'
Making install in randist
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o bernoulli.lo bernoulli.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c bernoulli.c  -fno-common -DPIC -o .libs/bernoulli.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o beta.lo beta.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c beta.c  -fno-common -DPIC -o .libs/beta.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o bigauss.lo bigauss.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c bigauss.c  -fno-common -DPIC -o .libs/bigauss.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o binomial.lo binomial.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c binomial.c  -fno-common -DPIC -o .libs/binomial.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o cauchy.lo cauchy.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c cauchy.c  -fno-common -DPIC -o .libs/cauchy.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o chisq.lo chisq.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c chisq.c  -fno-common -DPIC -o .libs/chisq.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o dirichlet.lo dirichlet.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c dirichlet.c  -fno-common -DPIC -o .libs/dirichlet.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o discrete.lo discrete.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c discrete.c  -fno-common -DPIC -o .libs/discrete.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o erlang.lo erlang.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c erlang.c  -fno-common -DPIC -o .libs/erlang.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o exponential.lo exponential.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c exponential.c  -fno-common -DPIC -o .libs/exponential.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o exppow.lo exppow.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c exppow.c  -fno-common -DPIC -o .libs/exppow.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o fdist.lo fdist.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c fdist.c  -fno-common -DPIC -o .libs/fdist.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o flat.lo flat.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c flat.c  -fno-common -DPIC -o .libs/flat.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o gamma.lo gamma.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c gamma.c  -fno-common -DPIC -o .libs/gamma.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o gauss.lo gauss.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c gauss.c  -fno-common -DPIC -o .libs/gauss.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o gausszig.lo gausszig.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c gausszig.c  -fno-common -DPIC -o .libs/gausszig.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o gausstail.lo gausstail.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c gausstail.c  -fno-common -DPIC -o .libs/gausstail.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o geometric.lo geometric.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c geometric.c  -fno-common -DPIC -o .libs/geometric.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o gumbel.lo gumbel.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c gumbel.c  -fno-common -DPIC -o .libs/gumbel.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o hyperg.lo hyperg.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c hyperg.c  -fno-common -DPIC -o .libs/hyperg.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o laplace.lo laplace.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c laplace.c  -fno-common -DPIC -o .libs/laplace.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o levy.lo levy.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c levy.c  -fno-common -DPIC -o .libs/levy.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o logarithmic.lo logarithmic.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c logarithmic.c  -fno-common -DPIC -o .libs/logarithmic.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o logistic.lo logistic.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c logistic.c  -fno-common -DPIC -o .libs/logistic.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o lognormal.lo lognormal.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c lognormal.c  -fno-common -DPIC -o .libs/lognormal.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o multinomial.lo multinomial.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c multinomial.c  -fno-common -DPIC -o .libs/multinomial.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o nbinomial.lo nbinomial.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c nbinomial.c  -fno-common -DPIC -o .libs/nbinomial.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o pareto.lo pareto.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c pareto.c  -fno-common -DPIC -o .libs/pareto.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o pascal.lo pascal.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c pascal.c  -fno-common -DPIC -o .libs/pascal.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o poisson.lo poisson.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c poisson.c  -fno-common -DPIC -o .libs/poisson.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o rayleigh.lo rayleigh.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c rayleigh.c  -fno-common -DPIC -o .libs/rayleigh.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o shuffle.lo shuffle.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c shuffle.c  -fno-common -DPIC -o .libs/shuffle.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o sphere.lo sphere.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c sphere.c  -fno-common -DPIC -o .libs/sphere.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o tdist.lo tdist.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c tdist.c  -fno-common -DPIC -o .libs/tdist.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o weibull.lo weibull.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c weibull.c  -fno-common -DPIC -o .libs/weibull.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o landau.lo landau.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c landau.c  -fno-common -DPIC -o .libs/landau.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o binomial_tpe.lo binomial_tpe.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c binomial_tpe.c  -fno-common -DPIC -o .libs/binomial_tpe.o
/bin/sh ../libtool --tag=CC   --mode=link clang -arch x86_64  -falign-functions=64 -Wall -g -O2  -L/opt/R/x86_64/lib -o libgslrandist.la  bernoulli.lo beta.lo bigauss.lo binomial.lo cauchy.lo chisq.lo dirichlet.lo discrete.lo erlang.lo exponential.lo exppow.lo fdist.lo flat.lo gamma.lo gauss.lo gausszig.lo gausstail.lo geometric.lo gumbel.lo hyperg.lo laplace.lo levy.lo logarithmic.lo logistic.lo lognormal.lo multinomial.lo nbinomial.lo pareto.lo pascal.lo poisson.lo rayleigh.lo shuffle.lo sphere.lo tdist.lo weibull.lo landau.lo binomial_tpe.lo  -lm 
libtool: link: ar cru .libs/libgslrandist.a .libs/bernoulli.o .libs/beta.o .libs/bigauss.o .libs/binomial.o .libs/cauchy.o .libs/chisq.o .libs/dirichlet.o .libs/discrete.o .libs/erlang.o .libs/exponential.o .libs/exppow.o .libs/fdist.o .libs/flat.o .libs/gamma.o .libs/gauss.o .libs/gausszig.o .libs/gausstail.o .libs/geometric.o .libs/gumbel.o .libs/hyperg.o .libs/laplace.o .libs/levy.o .libs/logarithmic.o .libs/logistic.o .libs/lognormal.o .libs/multinomial.o .libs/nbinomial.o .libs/pareto.o .libs/pascal.o .libs/poisson.o .libs/rayleigh.o .libs/shuffle.o .libs/sphere.o .libs/tdist.o .libs/weibull.o .libs/landau.o .libs/binomial_tpe.o 
libtool: link: ranlib .libs/libgslrandist.a
libtool: link: ( cd ".libs" && rm -f "libgslrandist.la" && ln -s "../libgslrandist.la" "libgslrandist.la" )
make[2]: Nothing to be done for `install-exec-am'.
test -z "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl" || .././install-sh -c -d "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl"
 /usr/bin/install -c -m 644 gsl_randist.h '/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl'
Making install in cdf
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o beta.lo beta.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c beta.c  -fno-common -DPIC -o .libs/beta.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o betainv.lo betainv.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c betainv.c  -fno-common -DPIC -o .libs/betainv.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o cauchy.lo cauchy.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c cauchy.c  -fno-common -DPIC -o .libs/cauchy.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o cauchyinv.lo cauchyinv.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c cauchyinv.c  -fno-common -DPIC -o .libs/cauchyinv.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o chisq.lo chisq.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c chisq.c  -fno-common -DPIC -o .libs/chisq.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o chisqinv.lo chisqinv.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c chisqinv.c  -fno-common -DPIC -o .libs/chisqinv.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o exponential.lo exponential.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c exponential.c  -fno-common -DPIC -o .libs/exponential.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o exponentialinv.lo exponentialinv.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c exponentialinv.c  -fno-common -DPIC -o .libs/exponentialinv.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o exppow.lo exppow.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c exppow.c  -fno-common -DPIC -o .libs/exppow.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o fdist.lo fdist.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c fdist.c  -fno-common -DPIC -o .libs/fdist.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o fdistinv.lo fdistinv.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c fdistinv.c  -fno-common -DPIC -o .libs/fdistinv.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o flat.lo flat.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c flat.c  -fno-common -DPIC -o .libs/flat.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o flatinv.lo flatinv.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c flatinv.c  -fno-common -DPIC -o .libs/flatinv.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o gamma.lo gamma.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c gamma.c  -fno-common -DPIC -o .libs/gamma.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o gammainv.lo gammainv.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c gammainv.c  -fno-common -DPIC -o .libs/gammainv.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o gauss.lo gauss.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c gauss.c  -fno-common -DPIC -o .libs/gauss.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o gaussinv.lo gaussinv.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c gaussinv.c  -fno-common -DPIC -o .libs/gaussinv.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o gumbel1.lo gumbel1.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c gumbel1.c  -fno-common -DPIC -o .libs/gumbel1.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o gumbel1inv.lo gumbel1inv.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c gumbel1inv.c  -fno-common -DPIC -o .libs/gumbel1inv.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o gumbel2.lo gumbel2.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c gumbel2.c  -fno-common -DPIC -o .libs/gumbel2.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o gumbel2inv.lo gumbel2inv.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c gumbel2inv.c  -fno-common -DPIC -o .libs/gumbel2inv.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o laplace.lo laplace.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c laplace.c  -fno-common -DPIC -o .libs/laplace.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o laplaceinv.lo laplaceinv.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c laplaceinv.c  -fno-common -DPIC -o .libs/laplaceinv.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o logistic.lo logistic.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c logistic.c  -fno-common -DPIC -o .libs/logistic.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o logisticinv.lo logisticinv.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c logisticinv.c  -fno-common -DPIC -o .libs/logisticinv.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o lognormal.lo lognormal.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c lognormal.c  -fno-common -DPIC -o .libs/lognormal.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o lognormalinv.lo lognormalinv.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c lognormalinv.c  -fno-common -DPIC -o .libs/lognormalinv.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o pareto.lo pareto.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c pareto.c  -fno-common -DPIC -o .libs/pareto.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o paretoinv.lo paretoinv.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c paretoinv.c  -fno-common -DPIC -o .libs/paretoinv.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o rayleigh.lo rayleigh.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c rayleigh.c  -fno-common -DPIC -o .libs/rayleigh.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o rayleighinv.lo rayleighinv.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c rayleighinv.c  -fno-common -DPIC -o .libs/rayleighinv.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o tdist.lo tdist.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c tdist.c  -fno-common -DPIC -o .libs/tdist.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o tdistinv.lo tdistinv.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c tdistinv.c  -fno-common -DPIC -o .libs/tdistinv.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o weibull.lo weibull.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c weibull.c  -fno-common -DPIC -o .libs/weibull.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o weibullinv.lo weibullinv.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c weibullinv.c  -fno-common -DPIC -o .libs/weibullinv.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o binomial.lo binomial.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c binomial.c  -fno-common -DPIC -o .libs/binomial.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o poisson.lo poisson.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c poisson.c  -fno-common -DPIC -o .libs/poisson.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o geometric.lo geometric.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c geometric.c  -fno-common -DPIC -o .libs/geometric.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o nbinomial.lo nbinomial.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c nbinomial.c  -fno-common -DPIC -o .libs/nbinomial.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o pascal.lo pascal.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c pascal.c  -fno-common -DPIC -o .libs/pascal.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o hypergeometric.lo hypergeometric.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c hypergeometric.c  -fno-common -DPIC -o .libs/hypergeometric.o
/bin/sh ../libtool --tag=CC   --mode=link clang -arch x86_64  -falign-functions=64 -Wall -g -O2  -L/opt/R/x86_64/lib -o libgslcdf.la  beta.lo betainv.lo cauchy.lo cauchyinv.lo chisq.lo chisqinv.lo exponential.lo exponentialinv.lo exppow.lo fdist.lo fdistinv.lo flat.lo flatinv.lo gamma.lo gammainv.lo gauss.lo gaussinv.lo gumbel1.lo gumbel1inv.lo gumbel2.lo gumbel2inv.lo laplace.lo laplaceinv.lo logistic.lo logisticinv.lo lognormal.lo lognormalinv.lo pareto.lo paretoinv.lo rayleigh.lo rayleighinv.lo tdist.lo tdistinv.lo weibull.lo weibullinv.lo binomial.lo poisson.lo geometric.lo nbinomial.lo pascal.lo hypergeometric.lo  -lm 
libtool: link: ar cru .libs/libgslcdf.a .libs/beta.o .libs/betainv.o .libs/cauchy.o .libs/cauchyinv.o .libs/chisq.o .libs/chisqinv.o .libs/exponential.o .libs/exponentialinv.o .libs/exppow.o .libs/fdist.o .libs/fdistinv.o .libs/flat.o .libs/flatinv.o .libs/gamma.o .libs/gammainv.o .libs/gauss.o .libs/gaussinv.o .libs/gumbel1.o .libs/gumbel1inv.o .libs/gumbel2.o .libs/gumbel2inv.o .libs/laplace.o .libs/laplaceinv.o .libs/logistic.o .libs/logisticinv.o .libs/lognormal.o .libs/lognormalinv.o .libs/pareto.o .libs/paretoinv.o .libs/rayleigh.o .libs/rayleighinv.o .libs/tdist.o .libs/tdistinv.o .libs/weibull.o .libs/weibullinv.o .libs/binomial.o .libs/poisson.o .libs/geometric.o .libs/nbinomial.o .libs/pascal.o .libs/hypergeometric.o 
libtool: link: ranlib .libs/libgslcdf.a
libtool: link: ( cd ".libs" && rm -f "libgslcdf.la" && ln -s "../libgslcdf.la" "libgslcdf.la" )
make[2]: Nothing to be done for `install-exec-am'.
test -z "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl" || .././install-sh -c -d "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl"
 /usr/bin/install -c -m 644 gsl_cdf.h '/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl'
Making install in cblas
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o sasum.lo sasum.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c sasum.c  -fno-common -DPIC -o .libs/sasum.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o saxpy.lo saxpy.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c saxpy.c  -fno-common -DPIC -o .libs/saxpy.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o scasum.lo scasum.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c scasum.c  -fno-common -DPIC -o .libs/scasum.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o scnrm2.lo scnrm2.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c scnrm2.c  -fno-common -DPIC -o .libs/scnrm2.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o scopy.lo scopy.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c scopy.c  -fno-common -DPIC -o .libs/scopy.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o sdot.lo sdot.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c sdot.c  -fno-common -DPIC -o .libs/sdot.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o sdsdot.lo sdsdot.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c sdsdot.c  -fno-common -DPIC -o .libs/sdsdot.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o sgbmv.lo sgbmv.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c sgbmv.c  -fno-common -DPIC -o .libs/sgbmv.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o sgemm.lo sgemm.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c sgemm.c  -fno-common -DPIC -o .libs/sgemm.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o sgemv.lo sgemv.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c sgemv.c  -fno-common -DPIC -o .libs/sgemv.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o sger.lo sger.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c sger.c  -fno-common -DPIC -o .libs/sger.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o snrm2.lo snrm2.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c snrm2.c  -fno-common -DPIC -o .libs/snrm2.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o srot.lo srot.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c srot.c  -fno-common -DPIC -o .libs/srot.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o srotg.lo srotg.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c srotg.c  -fno-common -DPIC -o .libs/srotg.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o srotm.lo srotm.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c srotm.c  -fno-common -DPIC -o .libs/srotm.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o srotmg.lo srotmg.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c srotmg.c  -fno-common -DPIC -o .libs/srotmg.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o ssbmv.lo ssbmv.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c ssbmv.c  -fno-common -DPIC -o .libs/ssbmv.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o sscal.lo sscal.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c sscal.c  -fno-common -DPIC -o .libs/sscal.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o sspmv.lo sspmv.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c sspmv.c  -fno-common -DPIC -o .libs/sspmv.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o sspr.lo sspr.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c sspr.c  -fno-common -DPIC -o .libs/sspr.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o sspr2.lo sspr2.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c sspr2.c  -fno-common -DPIC -o .libs/sspr2.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o sswap.lo sswap.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c sswap.c  -fno-common -DPIC -o .libs/sswap.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o ssymm.lo ssymm.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c ssymm.c  -fno-common -DPIC -o .libs/ssymm.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o ssymv.lo ssymv.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c ssymv.c  -fno-common -DPIC -o .libs/ssymv.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o ssyr.lo ssyr.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c ssyr.c  -fno-common -DPIC -o .libs/ssyr.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o ssyr2.lo ssyr2.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c ssyr2.c  -fno-common -DPIC -o .libs/ssyr2.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o ssyr2k.lo ssyr2k.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c ssyr2k.c  -fno-common -DPIC -o .libs/ssyr2k.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o ssyrk.lo ssyrk.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c ssyrk.c  -fno-common -DPIC -o .libs/ssyrk.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o stbmv.lo stbmv.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c stbmv.c  -fno-common -DPIC -o .libs/stbmv.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o stbsv.lo stbsv.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c stbsv.c  -fno-common -DPIC -o .libs/stbsv.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o stpmv.lo stpmv.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c stpmv.c  -fno-common -DPIC -o .libs/stpmv.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o stpsv.lo stpsv.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c stpsv.c  -fno-common -DPIC -o .libs/stpsv.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o strmm.lo strmm.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c strmm.c  -fno-common -DPIC -o .libs/strmm.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o strmv.lo strmv.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c strmv.c  -fno-common -DPIC -o .libs/strmv.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o strsm.lo strsm.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c strsm.c  -fno-common -DPIC -o .libs/strsm.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o strsv.lo strsv.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c strsv.c  -fno-common -DPIC -o .libs/strsv.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o dasum.lo dasum.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c dasum.c  -fno-common -DPIC -o .libs/dasum.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o daxpy.lo daxpy.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c daxpy.c  -fno-common -DPIC -o .libs/daxpy.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o dcopy.lo dcopy.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c dcopy.c  -fno-common -DPIC -o .libs/dcopy.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o ddot.lo ddot.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c ddot.c  -fno-common -DPIC -o .libs/ddot.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o dgbmv.lo dgbmv.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c dgbmv.c  -fno-common -DPIC -o .libs/dgbmv.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o dgemm.lo dgemm.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c dgemm.c  -fno-common -DPIC -o .libs/dgemm.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o dgemv.lo dgemv.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c dgemv.c  -fno-common -DPIC -o .libs/dgemv.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o dger.lo dger.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c dger.c  -fno-common -DPIC -o .libs/dger.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o dnrm2.lo dnrm2.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c dnrm2.c  -fno-common -DPIC -o .libs/dnrm2.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o drot.lo drot.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c drot.c  -fno-common -DPIC -o .libs/drot.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o drotg.lo drotg.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c drotg.c  -fno-common -DPIC -o .libs/drotg.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o drotm.lo drotm.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c drotm.c  -fno-common -DPIC -o .libs/drotm.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o drotmg.lo drotmg.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c drotmg.c  -fno-common -DPIC -o .libs/drotmg.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o dsbmv.lo dsbmv.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c dsbmv.c  -fno-common -DPIC -o .libs/dsbmv.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o dscal.lo dscal.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c dscal.c  -fno-common -DPIC -o .libs/dscal.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o dsdot.lo dsdot.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c dsdot.c  -fno-common -DPIC -o .libs/dsdot.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o dspmv.lo dspmv.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c dspmv.c  -fno-common -DPIC -o .libs/dspmv.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o dspr.lo dspr.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c dspr.c  -fno-common -DPIC -o .libs/dspr.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o dspr2.lo dspr2.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c dspr2.c  -fno-common -DPIC -o .libs/dspr2.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o dswap.lo dswap.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c dswap.c  -fno-common -DPIC -o .libs/dswap.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o dsymm.lo dsymm.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c dsymm.c  -fno-common -DPIC -o .libs/dsymm.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o dsymv.lo dsymv.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c dsymv.c  -fno-common -DPIC -o .libs/dsymv.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o dsyr.lo dsyr.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c dsyr.c  -fno-common -DPIC -o .libs/dsyr.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o dsyr2.lo dsyr2.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c dsyr2.c  -fno-common -DPIC -o .libs/dsyr2.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o dsyr2k.lo dsyr2k.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c dsyr2k.c  -fno-common -DPIC -o .libs/dsyr2k.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o dsyrk.lo dsyrk.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c dsyrk.c  -fno-common -DPIC -o .libs/dsyrk.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o dtbmv.lo dtbmv.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c dtbmv.c  -fno-common -DPIC -o .libs/dtbmv.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o dtbsv.lo dtbsv.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c dtbsv.c  -fno-common -DPIC -o .libs/dtbsv.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o dtpmv.lo dtpmv.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c dtpmv.c  -fno-common -DPIC -o .libs/dtpmv.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o dtpsv.lo dtpsv.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c dtpsv.c  -fno-common -DPIC -o .libs/dtpsv.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o dtrmm.lo dtrmm.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c dtrmm.c  -fno-common -DPIC -o .libs/dtrmm.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o dtrmv.lo dtrmv.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c dtrmv.c  -fno-common -DPIC -o .libs/dtrmv.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o dtrsm.lo dtrsm.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c dtrsm.c  -fno-common -DPIC -o .libs/dtrsm.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o dtrsv.lo dtrsv.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c dtrsv.c  -fno-common -DPIC -o .libs/dtrsv.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o dzasum.lo dzasum.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c dzasum.c  -fno-common -DPIC -o .libs/dzasum.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o dznrm2.lo dznrm2.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c dznrm2.c  -fno-common -DPIC -o .libs/dznrm2.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o caxpy.lo caxpy.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c caxpy.c  -fno-common -DPIC -o .libs/caxpy.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o ccopy.lo ccopy.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c ccopy.c  -fno-common -DPIC -o .libs/ccopy.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o cdotc_sub.lo cdotc_sub.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c cdotc_sub.c  -fno-common -DPIC -o .libs/cdotc_sub.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o cdotu_sub.lo cdotu_sub.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c cdotu_sub.c  -fno-common -DPIC -o .libs/cdotu_sub.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o cgbmv.lo cgbmv.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c cgbmv.c  -fno-common -DPIC -o .libs/cgbmv.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o cgemm.lo cgemm.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c cgemm.c  -fno-common -DPIC -o .libs/cgemm.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o cgemv.lo cgemv.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c cgemv.c  -fno-common -DPIC -o .libs/cgemv.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o cgerc.lo cgerc.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c cgerc.c  -fno-common -DPIC -o .libs/cgerc.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o cgeru.lo cgeru.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c cgeru.c  -fno-common -DPIC -o .libs/cgeru.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o chbmv.lo chbmv.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c chbmv.c  -fno-common -DPIC -o .libs/chbmv.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o chemm.lo chemm.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c chemm.c  -fno-common -DPIC -o .libs/chemm.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o chemv.lo chemv.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c chemv.c  -fno-common -DPIC -o .libs/chemv.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o cher.lo cher.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c cher.c  -fno-common -DPIC -o .libs/cher.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o cher2.lo cher2.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c cher2.c  -fno-common -DPIC -o .libs/cher2.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o cher2k.lo cher2k.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c cher2k.c  -fno-common -DPIC -o .libs/cher2k.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o cherk.lo cherk.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c cherk.c  -fno-common -DPIC -o .libs/cherk.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o chpmv.lo chpmv.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c chpmv.c  -fno-common -DPIC -o .libs/chpmv.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o chpr.lo chpr.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c chpr.c  -fno-common -DPIC -o .libs/chpr.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o chpr2.lo chpr2.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c chpr2.c  -fno-common -DPIC -o .libs/chpr2.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o cscal.lo cscal.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c cscal.c  -fno-common -DPIC -o .libs/cscal.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o csscal.lo csscal.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c csscal.c  -fno-common -DPIC -o .libs/csscal.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o cswap.lo cswap.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c cswap.c  -fno-common -DPIC -o .libs/cswap.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o csymm.lo csymm.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c csymm.c  -fno-common -DPIC -o .libs/csymm.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o csyr2k.lo csyr2k.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c csyr2k.c  -fno-common -DPIC -o .libs/csyr2k.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o csyrk.lo csyrk.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c csyrk.c  -fno-common -DPIC -o .libs/csyrk.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o ctbmv.lo ctbmv.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c ctbmv.c  -fno-common -DPIC -o .libs/ctbmv.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o ctbsv.lo ctbsv.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c ctbsv.c  -fno-common -DPIC -o .libs/ctbsv.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o ctpmv.lo ctpmv.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c ctpmv.c  -fno-common -DPIC -o .libs/ctpmv.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o ctpsv.lo ctpsv.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c ctpsv.c  -fno-common -DPIC -o .libs/ctpsv.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o ctrmm.lo ctrmm.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c ctrmm.c  -fno-common -DPIC -o .libs/ctrmm.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o ctrmv.lo ctrmv.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c ctrmv.c  -fno-common -DPIC -o .libs/ctrmv.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o ctrsm.lo ctrsm.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c ctrsm.c  -fno-common -DPIC -o .libs/ctrsm.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o ctrsv.lo ctrsv.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c ctrsv.c  -fno-common -DPIC -o .libs/ctrsv.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o zaxpy.lo zaxpy.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c zaxpy.c  -fno-common -DPIC -o .libs/zaxpy.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o zcopy.lo zcopy.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c zcopy.c  -fno-common -DPIC -o .libs/zcopy.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o zdotc_sub.lo zdotc_sub.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c zdotc_sub.c  -fno-common -DPIC -o .libs/zdotc_sub.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o zdotu_sub.lo zdotu_sub.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c zdotu_sub.c  -fno-common -DPIC -o .libs/zdotu_sub.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o zdscal.lo zdscal.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c zdscal.c  -fno-common -DPIC -o .libs/zdscal.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o zgbmv.lo zgbmv.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c zgbmv.c  -fno-common -DPIC -o .libs/zgbmv.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o zgemm.lo zgemm.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c zgemm.c  -fno-common -DPIC -o .libs/zgemm.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o zgemv.lo zgemv.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c zgemv.c  -fno-common -DPIC -o .libs/zgemv.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o zgerc.lo zgerc.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c zgerc.c  -fno-common -DPIC -o .libs/zgerc.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o zgeru.lo zgeru.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c zgeru.c  -fno-common -DPIC -o .libs/zgeru.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o zhbmv.lo zhbmv.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c zhbmv.c  -fno-common -DPIC -o .libs/zhbmv.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o zhemm.lo zhemm.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c zhemm.c  -fno-common -DPIC -o .libs/zhemm.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o zhemv.lo zhemv.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c zhemv.c  -fno-common -DPIC -o .libs/zhemv.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o zher.lo zher.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c zher.c  -fno-common -DPIC -o .libs/zher.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o zher2.lo zher2.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c zher2.c  -fno-common -DPIC -o .libs/zher2.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o zher2k.lo zher2k.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c zher2k.c  -fno-common -DPIC -o .libs/zher2k.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o zherk.lo zherk.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c zherk.c  -fno-common -DPIC -o .libs/zherk.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o zhpmv.lo zhpmv.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c zhpmv.c  -fno-common -DPIC -o .libs/zhpmv.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o zhpr.lo zhpr.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c zhpr.c  -fno-common -DPIC -o .libs/zhpr.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o zhpr2.lo zhpr2.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c zhpr2.c  -fno-common -DPIC -o .libs/zhpr2.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o zscal.lo zscal.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c zscal.c  -fno-common -DPIC -o .libs/zscal.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o zswap.lo zswap.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c zswap.c  -fno-common -DPIC -o .libs/zswap.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o zsymm.lo zsymm.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c zsymm.c  -fno-common -DPIC -o .libs/zsymm.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o zsyr2k.lo zsyr2k.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c zsyr2k.c  -fno-common -DPIC -o .libs/zsyr2k.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o zsyrk.lo zsyrk.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c zsyrk.c  -fno-common -DPIC -o .libs/zsyrk.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o ztbmv.lo ztbmv.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c ztbmv.c  -fno-common -DPIC -o .libs/ztbmv.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o ztbsv.lo ztbsv.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c ztbsv.c  -fno-common -DPIC -o .libs/ztbsv.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o ztpmv.lo ztpmv.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c ztpmv.c  -fno-common -DPIC -o .libs/ztpmv.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o ztpsv.lo ztpsv.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c ztpsv.c  -fno-common -DPIC -o .libs/ztpsv.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o ztrmm.lo ztrmm.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c ztrmm.c  -fno-common -DPIC -o .libs/ztrmm.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o ztrmv.lo ztrmv.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c ztrmv.c  -fno-common -DPIC -o .libs/ztrmv.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o ztrsm.lo ztrsm.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c ztrsm.c  -fno-common -DPIC -o .libs/ztrsm.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o ztrsv.lo ztrsv.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c ztrsv.c  -fno-common -DPIC -o .libs/ztrsv.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o icamax.lo icamax.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c icamax.c  -fno-common -DPIC -o .libs/icamax.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o idamax.lo idamax.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c idamax.c  -fno-common -DPIC -o .libs/idamax.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o isamax.lo isamax.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c isamax.c  -fno-common -DPIC -o .libs/isamax.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o izamax.lo izamax.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c izamax.c  -fno-common -DPIC -o .libs/izamax.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o xerbla.lo xerbla.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c xerbla.c  -fno-common -DPIC -o .libs/xerbla.o
/bin/sh ../libtool --tag=CC   --mode=link clang -arch x86_64  -falign-functions=64 -Wall -g -O2 -version-info 0:0:0  -L/opt/R/x86_64/lib -o libgslcblas.la -rpath /Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/lib sasum.lo saxpy.lo scasum.lo scnrm2.lo scopy.lo sdot.lo sdsdot.lo sgbmv.lo sgemm.lo sgemv.lo sger.lo snrm2.lo srot.lo srotg.lo srotm.lo srotmg.lo ssbmv.lo sscal.lo sspmv.lo sspr.lo sspr2.lo sswap.lo ssymm.lo ssymv.lo ssyr.lo ssyr2.lo ssyr2k.lo ssyrk.lo stbmv.lo stbsv.lo stpmv.lo stpsv.lo strmm.lo strmv.lo strsm.lo strsv.lo dasum.lo daxpy.lo dcopy.lo ddot.lo dgbmv.lo dgemm.lo dgemv.lo dger.lo dnrm2.lo drot.lo drotg.lo drotm.lo drotmg.lo dsbmv.lo dscal.lo dsdot.lo dspmv.lo dspr.lo dspr2.lo dswap.lo dsymm.lo dsymv.lo dsyr.lo dsyr2.lo dsyr2k.lo dsyrk.lo dtbmv.lo dtbsv.lo dtpmv.lo dtpsv.lo dtrmm.lo dtrmv.lo dtrsm.lo dtrsv.lo dzasum.lo dznrm2.lo caxpy.lo ccopy.lo cdotc_sub.lo cdotu_sub.lo cgbmv.lo cgemm.lo cgemv.lo cgerc.lo cgeru.lo chbmv.lo chemm.lo chemv.lo cher.lo cher2.lo cher2k.lo cherk.lo chpmv.lo chpr.lo chpr2.lo cscal.lo csscal.lo cswap.lo csymm.lo csyr2k.lo csyrk.lo ctbmv.lo ctbsv.lo ctpmv.lo ctpsv.lo ctrmm.lo ctrmv.lo ctrsm.lo ctrsv.lo zaxpy.lo zcopy.lo zdotc_sub.lo zdotu_sub.lo zdscal.lo zgbmv.lo zgemm.lo zgemv.lo zgerc.lo zgeru.lo zhbmv.lo zhemm.lo zhemv.lo zher.lo zher2.lo zher2k.lo zherk.lo zhpmv.lo zhpr.lo zhpr2.lo zscal.lo zswap.lo zsymm.lo zsyr2k.lo zsyrk.lo ztbmv.lo ztbsv.lo ztpmv.lo ztpsv.lo ztrmm.lo ztrmv.lo ztrsm.lo ztrsv.lo icamax.lo idamax.lo isamax.lo izamax.lo xerbla.lo  -lm 
libtool: link: clang -arch x86_64 -dynamiclib  -o .libs/libgslcblas.0.dylib  .libs/sasum.o .libs/saxpy.o .libs/scasum.o .libs/scnrm2.o .libs/scopy.o .libs/sdot.o .libs/sdsdot.o .libs/sgbmv.o .libs/sgemm.o .libs/sgemv.o .libs/sger.o .libs/snrm2.o .libs/srot.o .libs/srotg.o .libs/srotm.o .libs/srotmg.o .libs/ssbmv.o .libs/sscal.o .libs/sspmv.o .libs/sspr.o .libs/sspr2.o .libs/sswap.o .libs/ssymm.o .libs/ssymv.o .libs/ssyr.o .libs/ssyr2.o .libs/ssyr2k.o .libs/ssyrk.o .libs/stbmv.o .libs/stbsv.o .libs/stpmv.o .libs/stpsv.o .libs/strmm.o .libs/strmv.o .libs/strsm.o .libs/strsv.o .libs/dasum.o .libs/daxpy.o .libs/dcopy.o .libs/ddot.o .libs/dgbmv.o .libs/dgemm.o .libs/dgemv.o .libs/dger.o .libs/dnrm2.o .libs/drot.o .libs/drotg.o .libs/drotm.o .libs/drotmg.o .libs/dsbmv.o .libs/dscal.o .libs/dsdot.o .libs/dspmv.o .libs/dspr.o .libs/dspr2.o .libs/dswap.o .libs/dsymm.o .libs/dsymv.o .libs/dsyr.o .libs/dsyr2.o .libs/dsyr2k.o .libs/dsyrk.o .libs/dtbmv.o .libs/dtbsv.o .libs/dtpmv.o .libs/dtpsv.o .libs/dtrmm.o .libs/dtrmv.o .libs/dtrsm.o .libs/dtrsv.o .libs/dzasum.o .libs/dznrm2.o .libs/caxpy.o .libs/ccopy.o .libs/cdotc_sub.o .libs/cdotu_sub.o .libs/cgbmv.o .libs/cgemm.o .libs/cgemv.o .libs/cgerc.o .libs/cgeru.o .libs/chbmv.o .libs/chemm.o .libs/chemv.o .libs/cher.o .libs/cher2.o .libs/cher2k.o .libs/cherk.o .libs/chpmv.o .libs/chpr.o .libs/chpr2.o .libs/cscal.o .libs/csscal.o .libs/cswap.o .libs/csymm.o .libs/csyr2k.o .libs/csyrk.o .libs/ctbmv.o .libs/ctbsv.o .libs/ctpmv.o .libs/ctpsv.o .libs/ctrmm.o .libs/ctrmv.o .libs/ctrsm.o .libs/ctrsv.o .libs/zaxpy.o .libs/zcopy.o .libs/zdotc_sub.o .libs/zdotu_sub.o .libs/zdscal.o .libs/zgbmv.o .libs/zgemm.o .libs/zgemv.o .libs/zgerc.o .libs/zgeru.o .libs/zhbmv.o .libs/zhemm.o .libs/zhemv.o .libs/zher.o .libs/zher2.o .libs/zher2k.o .libs/zherk.o .libs/zhpmv.o .libs/zhpr.o .libs/zhpr2.o .libs/zscal.o .libs/zswap.o .libs/zsymm.o .libs/zsyr2k.o .libs/zsyrk.o .libs/ztbmv.o .libs/ztbsv.o .libs/ztpmv.o .libs/ztpsv.o .libs/ztrmm.o .libs/ztrmv.o .libs/ztrsm.o .libs/ztrsv.o .libs/icamax.o .libs/idamax.o .libs/isamax.o .libs/izamax.o .libs/xerbla.o   -L/opt/R/x86_64/lib -lm  -arch x86_64   -install_name  /Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/lib/libgslcblas.0.dylib -compatibility_version 1 -current_version 1.0 -Wl,-single_module
libtool: link: dsymutil .libs/libgslcblas.0.dylib || :
libtool: link: (cd ".libs" && rm -f "libgslcblas.dylib" && ln -s "libgslcblas.0.dylib" "libgslcblas.dylib")
libtool: link: ( cd ".libs" && rm -f "libgslcblas.la" && ln -s "../libgslcblas.la" "libgslcblas.la" )
test -z "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/lib" || .././install-sh -c -d "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/lib"
 /bin/sh ../libtool   --mode=install /usr/bin/install -c   libgslcblas.la '/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/lib'
libtool: install: /usr/bin/install -c .libs/libgslcblas.0.dylib /Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/lib/libgslcblas.0.dylib
libtool: install: (cd /Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/lib && { ln -s -f libgslcblas.0.dylib libgslcblas.dylib || { rm -f libgslcblas.dylib && ln -s libgslcblas.0.dylib libgslcblas.dylib; }; })
libtool: install: /usr/bin/install -c .libs/libgslcblas.lai /Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/lib/libgslcblas.la
----------------------------------------------------------------------
Libraries have been installed in:
   /Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/lib

If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
   - add LIBDIR to the `DYLD_LIBRARY_PATH' environment variable
     during execution

See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
test -z "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl" || .././install-sh -c -d "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl"
 /usr/bin/install -c -m 644 gsl_cblas.h '/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl'
Making install in specfunc
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o airy.lo airy.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c airy.c  -fno-common -DPIC -o .libs/airy.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o airy_der.lo airy_der.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c airy_der.c  -fno-common -DPIC -o .libs/airy_der.o
airy_der.c:595:10: warning: variable 'x32' set but not used [-Wunused-but-set-variable]
  double x32;
         ^
1 warning generated.
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o airy_zero.lo airy_zero.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c airy_zero.c  -fno-common -DPIC -o .libs/airy_zero.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o atanint.lo atanint.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c atanint.c  -fno-common -DPIC -o .libs/atanint.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o bessel.lo bessel.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c bessel.c  -fno-common -DPIC -o .libs/bessel.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o bessel_I0.lo bessel_I0.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c bessel_I0.c  -fno-common -DPIC -o .libs/bessel_I0.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o bessel_I1.lo bessel_I1.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c bessel_I1.c  -fno-common -DPIC -o .libs/bessel_I1.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o bessel_In.lo bessel_In.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c bessel_In.c  -fno-common -DPIC -o .libs/bessel_In.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o bessel_Inu.lo bessel_Inu.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c bessel_Inu.c  -fno-common -DPIC -o .libs/bessel_Inu.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o bessel_J0.lo bessel_J0.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c bessel_J0.c  -fno-common -DPIC -o .libs/bessel_J0.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o bessel_J1.lo bessel_J1.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c bessel_J1.c  -fno-common -DPIC -o .libs/bessel_J1.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o bessel_Jn.lo bessel_Jn.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c bessel_Jn.c  -fno-common -DPIC -o .libs/bessel_Jn.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o bessel_Jnu.lo bessel_Jnu.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c bessel_Jnu.c  -fno-common -DPIC -o .libs/bessel_Jnu.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o bessel_K0.lo bessel_K0.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c bessel_K0.c  -fno-common -DPIC -o .libs/bessel_K0.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o bessel_K1.lo bessel_K1.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c bessel_K1.c  -fno-common -DPIC -o .libs/bessel_K1.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o bessel_Kn.lo bessel_Kn.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c bessel_Kn.c  -fno-common -DPIC -o .libs/bessel_Kn.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o bessel_Knu.lo bessel_Knu.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c bessel_Knu.c  -fno-common -DPIC -o .libs/bessel_Knu.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o bessel_Y0.lo bessel_Y0.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c bessel_Y0.c  -fno-common -DPIC -o .libs/bessel_Y0.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o bessel_Y1.lo bessel_Y1.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c bessel_Y1.c  -fno-common -DPIC -o .libs/bessel_Y1.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o bessel_Yn.lo bessel_Yn.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c bessel_Yn.c  -fno-common -DPIC -o .libs/bessel_Yn.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o bessel_Ynu.lo bessel_Ynu.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c bessel_Ynu.c  -fno-common -DPIC -o .libs/bessel_Ynu.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o bessel_amp_phase.lo bessel_amp_phase.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c bessel_amp_phase.c  -fno-common -DPIC -o .libs/bessel_amp_phase.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o bessel_i.lo bessel_i.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c bessel_i.c  -fno-common -DPIC -o .libs/bessel_i.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o bessel_j.lo bessel_j.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c bessel_j.c  -fno-common -DPIC -o .libs/bessel_j.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o bessel_k.lo bessel_k.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c bessel_k.c  -fno-common -DPIC -o .libs/bessel_k.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o bessel_olver.lo bessel_olver.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c bessel_olver.c  -fno-common -DPIC -o .libs/bessel_olver.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o bessel_temme.lo bessel_temme.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c bessel_temme.c  -fno-common -DPIC -o .libs/bessel_temme.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o bessel_y.lo bessel_y.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c bessel_y.c  -fno-common -DPIC -o .libs/bessel_y.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o bessel_zero.lo bessel_zero.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c bessel_zero.c  -fno-common -DPIC -o .libs/bessel_zero.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o bessel_sequence.lo bessel_sequence.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c bessel_sequence.c  -fno-common -DPIC -o .libs/bessel_sequence.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o beta.lo beta.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c beta.c  -fno-common -DPIC -o .libs/beta.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o beta_inc.lo beta_inc.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c beta_inc.c  -fno-common -DPIC -o .libs/beta_inc.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o clausen.lo clausen.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c clausen.c  -fno-common -DPIC -o .libs/clausen.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o coulomb.lo coulomb.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c coulomb.c  -fno-common -DPIC -o .libs/coulomb.o
coulomb.c:1061:9: warning: variable 'stat_CF1_lam_G' set but not used [-Wunused-but-set-variable]
    int stat_CF1_lam_G;
        ^
coulomb.c:1131:23: warning: variable 'Fp_lam_min' set but not used [-Wunused-but-set-variable]
    double F_lam_min, Fp_lam_min;
                      ^
coulomb.c:994:17: warning: variable 'G_lam_G' is uninitialized when used here [-Wuninitialized]
      G->val  = G_lam_G;
                ^~~~~~~
coulomb.c:945:19: note: initialize the variable 'G_lam_G' to silence this warning
    double G_lam_G, Gp_lam_G;
                  ^
                   = 0.0
coulomb.c:996:17: warning: variable 'Gp_lam_G' is uninitialized when used here [-Wuninitialized]
      Gp->val = Gp_lam_G;
                ^~~~~~~~
coulomb.c:945:29: note: initialize the variable 'Gp_lam_G' to silence this warning
    double G_lam_G, Gp_lam_G;
                            ^
                             = 0.0
4 warnings generated.
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o coupling.lo coupling.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c coupling.c  -fno-common -DPIC -o .libs/coupling.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o coulomb_bound.lo coulomb_bound.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c coulomb_bound.c  -fno-common -DPIC -o .libs/coulomb_bound.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o dawson.lo dawson.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c dawson.c  -fno-common -DPIC -o .libs/dawson.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o debye.lo debye.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c debye.c  -fno-common -DPIC -o .libs/debye.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o dilog.lo dilog.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c dilog.c  -fno-common -DPIC -o .libs/dilog.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o elementary.lo elementary.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c elementary.c  -fno-common -DPIC -o .libs/elementary.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o ellint.lo ellint.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c ellint.c  -fno-common -DPIC -o .libs/ellint.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o elljac.lo elljac.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c elljac.c  -fno-common -DPIC -o .libs/elljac.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o erfc.lo erfc.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c erfc.c  -fno-common -DPIC -o .libs/erfc.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o exp.lo exp.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c exp.c  -fno-common -DPIC -o .libs/exp.o
exp.c:216:83: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value]
      const double arg_err = 2.0 * GSL_DBL_EPSILON * (fabs(x) + fabs(ly) + M_LN10*fabs(N));
                                                                                  ^
exp.c:216:83: note: use function 'abs' instead
      const double arg_err = 2.0 * GSL_DBL_EPSILON * (fabs(x) + fabs(ly) + M_LN10*fabs(N));
                                                                                  ^~~~
                                                                                  abs
exp.c:216:83: note: include the header <stdlib.h> or explicitly provide a declaration for 'abs'
1 warning generated.
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o expint.lo expint.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c expint.c  -fno-common -DPIC -o .libs/expint.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o expint3.lo expint3.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c expint3.c  -fno-common -DPIC -o .libs/expint3.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o fermi_dirac.lo fermi_dirac.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c fermi_dirac.c  -fno-common -DPIC -o .libs/fermi_dirac.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o gegenbauer.lo gegenbauer.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c gegenbauer.c  -fno-common -DPIC -o .libs/gegenbauer.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o gamma.lo gamma.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c gamma.c  -fno-common -DPIC -o .libs/gamma.o
gamma.c:1614:54: warning: taking the absolute value of unsigned type 'unsigned int' has no effect [-Wabsolute-value]
        result->err = 2.0 * GSL_DBL_EPSILON * prod * fabs(n-m);
                                                     ^
gamma.c:1614:54: note: remove the call to 'fabs' since unsigned values cannot be negative
        result->err = 2.0 * GSL_DBL_EPSILON * prod * fabs(n-m);
                                                     ^~~~
1 warning generated.
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o gamma_inc.lo gamma_inc.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c gamma_inc.c  -fno-common -DPIC -o .libs/gamma_inc.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o hyperg_0F1.lo hyperg_0F1.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c hyperg_0F1.c  -fno-common -DPIC -o .libs/hyperg_0F1.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o hyperg_2F0.lo hyperg_2F0.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c hyperg_2F0.c  -fno-common -DPIC -o .libs/hyperg_2F0.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o hyperg_1F1.lo hyperg_1F1.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c hyperg_1F1.c  -fno-common -DPIC -o .libs/hyperg_1F1.o
hyperg_1F1.c:1003:44: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value]
    result->err = 2.0 * GSL_DBL_EPSILON * (fabs(a) + 1.0) * fabs(Ma/Mn);
                                           ^
hyperg_1F1.c:1003:44: note: use function 'abs' instead
    result->err = 2.0 * GSL_DBL_EPSILON * (fabs(a) + 1.0) * fabs(Ma/Mn);
                                           ^~~~
                                           abs
hyperg_1F1.c:1034:45: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value]
    result->err += 4.0 * GSL_DBL_EPSILON * (fabs(b-a)+1.0) * fabs(result->val);
                                            ^
hyperg_1F1.c:1034:45: note: use function 'abs' instead
    result->err += 4.0 * GSL_DBL_EPSILON * (fabs(b-a)+1.0) * fabs(result->val);
                                            ^~~~
                                            abs
hyperg_1F1.c:1057:24: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value]
        result->err *= fabs(a-b)+1.0;
                       ^
hyperg_1F1.c:1057:24: note: use function 'abs' instead
        result->err *= fabs(a-b)+1.0;
                       ^~~~
                       abs
hyperg_1F1.c:1086:40: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value]
      result->err  = fabs(Mn) * (1.0 + fabs(a)) * fabs(r_Mn.err / r_Mn.val);
                                       ^
hyperg_1F1.c:1086:40: note: use function 'abs' instead
      result->err  = fabs(Mn) * (1.0 + fabs(a)) * fabs(r_Mn.err / r_Mn.val);
                                       ^~~~
                                       abs
hyperg_1F1.c:1113:22: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value]
      result->err *= fabs(b-a)+1.0;
                     ^
hyperg_1F1.c:1113:22: note: use function 'abs' instead
      result->err *= fabs(b-a)+1.0;
                     ^~~~
                     abs
hyperg_1F1.c:1169:22: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value]
      result->err *= fabs(b-a)+1.0;
                     ^
hyperg_1F1.c:1169:22: note: use function 'abs' instead
      result->err *= fabs(b-a)+1.0;
                     ^~~~
                     abs
hyperg_1F1.c:1813:41: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value]
  else if(x > 100.0  && GSL_MAX_DBL(1.0,fabs(b-a))*GSL_MAX_DBL(1.0,fabs(1-a)) < 0.5 * x) {
                                        ^
hyperg_1F1.c:1813:41: note: use function 'abs' instead
  else if(x > 100.0  && GSL_MAX_DBL(1.0,fabs(b-a))*GSL_MAX_DBL(1.0,fabs(1-a)) < 0.5 * x) {
                                        ^~~~
                                        abs
hyperg_1F1.c:1813:68: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value]
  else if(x > 100.0  && GSL_MAX_DBL(1.0,fabs(b-a))*GSL_MAX_DBL(1.0,fabs(1-a)) < 0.5 * x) {
                                                                   ^
hyperg_1F1.c:1813:68: note: use function 'abs' instead
  else if(x > 100.0  && GSL_MAX_DBL(1.0,fabs(b-a))*GSL_MAX_DBL(1.0,fabs(1-a)) < 0.5 * x) {
                                                                   ^~~~
                                                                   abs
hyperg_1F1.c:1817:41: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value]
  else if(x < -100.0 && GSL_MAX_DBL(1.0,fabs(a))*GSL_MAX_DBL(1.0,fabs(1+a-b)) < 0.5 * fabs(x)) {
                                        ^
hyperg_1F1.c:1817:41: note: use function 'abs' instead
  else if(x < -100.0 && GSL_MAX_DBL(1.0,fabs(a))*GSL_MAX_DBL(1.0,fabs(1+a-b)) < 0.5 * fabs(x)) {
                                        ^~~~
                                        abs
hyperg_1F1.c:1817:66: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value]
  else if(x < -100.0 && GSL_MAX_DBL(1.0,fabs(a))*GSL_MAX_DBL(1.0,fabs(1+a-b)) < 0.5 * fabs(x)) {
                                                                 ^
hyperg_1F1.c:1817:66: note: use function 'abs' instead
  else if(x < -100.0 && GSL_MAX_DBL(1.0,fabs(a))*GSL_MAX_DBL(1.0,fabs(1+a-b)) < 0.5 * fabs(x)) {
                                                                 ^~~~
                                                                 abs
10 warnings generated.
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o hyperg_2F1.lo hyperg_2F1.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c hyperg_2F1.c  -fno-common -DPIC -o .libs/hyperg_2F1.o
hyperg_2F1.c:373:9: warning: variable 'stat_c' set but not used [-Wunused-but-set-variable]
    int stat_c;
        ^
hyperg_2F1.c:523:9: warning: variable 'status_F1' set but not used [-Wunused-but-set-variable]
    int status_F1, status_F2;
        ^
hyperg_2F1.c:523:20: warning: variable 'status_F2' set but not used [-Wunused-but-set-variable]
    int status_F1, status_F2;
                   ^
hyperg_2F1.c:721:12: warning: variable 'ap' set but not used [-Wunused-but-set-variable]
    double ap, bp; 
           ^
4 warnings generated.
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o hyperg_U.lo hyperg_U.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c hyperg_U.c  -fno-common -DPIC -o .libs/hyperg_U.o
hyperg_U.c:285:38: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value]
    result->err += fabs(poch.val) * (fabs(N) + 2.0) * GSL_DBL_EPSILON * fabs(sum_val);
                                     ^
hyperg_U.c:285:38: note: use function 'abs' instead
    result->err += fabs(poch.val) * (fabs(N) + 2.0) * GSL_DBL_EPSILON * fabs(sum_val);
                                     ^~~~
                                     abs
hyperg_U.c:301:11: warning: variable 'stat_gamr' set but not used [-Wunused-but-set-variable]
      int stat_gamr;
          ^
hyperg_U.c:527:13: warning: 'finite' is deprecated: first deprecated in macOS 10.9 - Use `isfinite((double)x)` instead. [-Wdeprecated-declarations]
        if(!finite(t_val) || fabs(t_val) < EPS*fabs(dchu_val)) break;
            ^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/math.h:752:12: note: 'finite' has been explicitly marked deprecated here
extern int finite(double)
           ^
hyperg_U.c:861:45: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value]
    result->err  = 2.0 * GSL_DBL_EPSILON * (fabs(b) + fabs(x));
                                            ^
hyperg_U.c:861:45: note: use function 'abs' instead
    result->err  = 2.0 * GSL_DBL_EPSILON * (fabs(b) + fabs(x));
                                            ^~~~
                                            abs
hyperg_U.c:871:11: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value]
  else if(ASYMP_EVAL_OK(a,b,x)) {
          ^
hyperg_U.c:40:43: note: expanded from macro 'ASYMP_EVAL_OK'
#define ASYMP_EVAL_OK(a,b,x) (GSL_MAX_DBL(fabs(a),1.0)*GSL_MAX_DBL(fabs(1.0+a-b),1.0) < 0.99*fabs(x))
                                          ^
hyperg_U.c:871:11: note: use function 'abs' instead
hyperg_U.c:40:43: note: expanded from macro 'ASYMP_EVAL_OK'
#define ASYMP_EVAL_OK(a,b,x) (GSL_MAX_DBL(fabs(a),1.0)*GSL_MAX_DBL(fabs(1.0+a-b),1.0) < 0.99*fabs(x))
                                          ^
hyperg_U.c:881:11: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value]
  else if(SERIES_EVAL_OK(a,b,x) && 1 + a - b > 0) {
          ^
hyperg_U.c:38:33: note: expanded from macro 'SERIES_EVAL_OK'
#define SERIES_EVAL_OK(a,b,x) ((fabs(a) < 5 && b < 5 && x < 2.0) || (fabs(a) <  10 && b < 10 && x < 1.0))
                                ^
hyperg_U.c:881:11: note: use function 'abs' instead
hyperg_U.c:38:33: note: expanded from macro 'SERIES_EVAL_OK'
#define SERIES_EVAL_OK(a,b,x) ((fabs(a) < 5 && b < 5 && x < 2.0) || (fabs(a) <  10 && b < 10 && x < 1.0))
                                ^
hyperg_U.c:881:11: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value]
  else if(SERIES_EVAL_OK(a,b,x) && 1 + a - b > 0) {
          ^
hyperg_U.c:38:70: note: expanded from macro 'SERIES_EVAL_OK'
#define SERIES_EVAL_OK(a,b,x) ((fabs(a) < 5 && b < 5 && x < 2.0) || (fabs(a) <  10 && b < 10 && x < 1.0))
                                                                     ^
hyperg_U.c:881:11: note: use function 'abs' instead
hyperg_U.c:38:70: note: expanded from macro 'SERIES_EVAL_OK'
#define SERIES_EVAL_OK(a,b,x) ((fabs(a) < 5 && b < 5 && x < 2.0) || (fabs(a) <  10 && b < 10 && x < 1.0))
                                                                     ^
hyperg_U.c:913:38: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value]
    y.err = 4.0 * GSL_DBL_EPSILON * (fabs(a)+1.0) * fabs(Ua);
                                     ^
hyperg_U.c:913:38: note: use function 'abs' instead
    y.err = 4.0 * GSL_DBL_EPSILON * (fabs(a)+1.0) * fabs(Ua);
                                     ^~~~
                                     abs
hyperg_U.c:947:39: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value]
    y.err += 2.0 * GSL_DBL_EPSILON * (fabs(a) + 1.0) * fabs(Ua);
                                      ^
hyperg_U.c:947:39: note: use function 'abs' instead
    y.err += 2.0 * GSL_DBL_EPSILON * (fabs(a) + 1.0) * fabs(Ua);
                                      ^~~~
                                      abs
hyperg_U.c:998:35: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value]
        double oUa_err   = 2.0 * (fabs(a_target-a) + CF1_count + 1.0) * GSL_DBL_EPSILON * fabs(1.0/Ua);
                                  ^
hyperg_U.c:998:35: note: use function 'abs' instead
        double oUa_err   = 2.0 * (fabs(a_target-a) + CF1_count + 1.0) * GSL_DBL_EPSILON * fabs(1.0/Ua);
                                  ^~~~
                                  abs
hyperg_U.c:1042:48: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value]
        Ua1_bck_err = 2.0 * GSL_DBL_EPSILON * (fabs(a1-a)+CF1_count+1.0) * fabs(Ua);
                                               ^
hyperg_U.c:1042:48: note: use function 'abs' instead
        Ua1_bck_err = 2.0 * GSL_DBL_EPSILON * (fabs(a1-a)+CF1_count+1.0) * fabs(Ua);
                                               ^~~~
                                               abs
hyperg_U.c:1108:49: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value]
        Ua1_for_err += 2.0 * GSL_DBL_EPSILON * (fabs(a1-a0)+1.0) * fabs(Ua1_for_val);
                                                ^
hyperg_U.c:1108:49: note: use function 'abs' instead
        Ua1_for_err += 2.0 * GSL_DBL_EPSILON * (fabs(a1-a0)+1.0) * fabs(Ua1_for_val);
                                                ^~~~
                                                abs
hyperg_U.c:1439:57: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value]
      lnm.err = 2.0 * GSL_DBL_EPSILON * (fabs(lm_for) + fabs(scale_count_for - scale_count_bck)*fabs(lnscale));
                                                        ^
hyperg_U.c:1439:57: note: use function 'abs' instead
      lnm.err = 2.0 * GSL_DBL_EPSILON * (fabs(lm_for) + fabs(scale_count_for - scale_count_bck)*fabs(lnscale));
                                                        ^~~~
                                                        abs
hyperg_U.c:1512:52: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value]
      double ln_pre_err = 2.0 * GSL_DBL_EPSILON * (fabs(b)+1.0) * fabs(ln_x);
                                                   ^
hyperg_U.c:1512:52: note: use function 'abs' instead
      double ln_pre_err = 2.0 * GSL_DBL_EPSILON * (fabs(b)+1.0) * fabs(ln_x);
                                                   ^~~~
                                                   abs
14 warnings generated.
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o hyperg.lo hyperg.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c hyperg.c  -fno-common -DPIC -o .libs/hyperg.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o laguerre.lo laguerre.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c laguerre.c  -fno-common -DPIC -o .libs/laguerre.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o lambert.lo lambert.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c lambert.c  -fno-common -DPIC -o .libs/lambert.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o legendre_H3d.lo legendre_H3d.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c legendre_H3d.c  -fno-common -DPIC -o .libs/legendre_H3d.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o legendre_Qn.lo legendre_Qn.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c legendre_Qn.c  -fno-common -DPIC -o .libs/legendre_Qn.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o legendre_con.lo legendre_con.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c legendre_con.c  -fno-common -DPIC -o .libs/legendre_con.o
legendre_con.c:875:17: warning: variable 'stat_E' set but not used [-Wunused-but-set-variable]
    int stat_K, stat_E;
                ^
legendre_con.c:173:21: warning: unused variable 'U3c1' [-Wunused-const-variable]
static const double U3c1[] = {   -1307.0,   -1647.0,    3375.0,    3675.0 };
                    ^
legendre_con.c:174:21: warning: unused variable 'U3c2' [-Wunused-const-variable]
static const double U3c2[] = {   29366.0,   35835.0, -252360.0, -272630.0,
                    ^
legendre_con.c:176:21: warning: unused variable 'U3c3' [-Wunused-const-variable]
static const double U3c3[] = {  -29748.0,   -8840.0, 1725295.0, 1767025.0,
                    ^
legendre_con.c:178:21: warning: unused variable 'U3c4' [-Wunused-const-variable]
static const double U3c4[] = {    2696.0,    -16740.0,   -524250.0,  -183975.0,
                    ^
legendre_con.c:181:21: warning: unused variable 'U3c5' [-Wunused-const-variable]
static const double U3c5[] = {       9136.0,      22480.0,     12760.0,
                    ^
6 warnings generated.
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o legendre_poly.lo legendre_poly.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c legendre_poly.c  -fno-common -DPIC -o .libs/legendre_poly.o
legendre_poly.c:544:67: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value]
    lnpre_err = 0.25*M_LNPI*GSL_DBL_EPSILON + 0.5 * (lnpoch.err + fabs(m)*lncirc.err);
                                                                  ^
legendre_poly.c:544:67: note: use function 'abs' instead
    lnpre_err = 0.25*M_LNPI*GSL_DBL_EPSILON + 0.5 * (lnpoch.err + fabs(m)*lncirc.err);
                                                                  ^~~~
                                                                  abs
legendre_poly.c:582:93: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value]
        y_ell_err = 0.5*(fabs(x*factor1)*y_mmp1_err + fabs((ell+m-1.0)*factor2)*y_mm_err) / fabs(ell-m);
                                                                                            ^
legendre_poly.c:582:93: note: use function 'abs' instead
        y_ell_err = 0.5*(fabs(x*factor1)*y_mmp1_err + fabs((ell+m-1.0)*factor2)*y_mm_err) / fabs(ell-m);
                                                                                            ^~~~
                                                                                            abs
2 warnings generated.
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o log.lo log.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c log.c  -fno-common -DPIC -o .libs/log.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o mathieu_angfunc.lo mathieu_angfunc.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c mathieu_angfunc.c  -fno-common -DPIC -o .libs/mathieu_angfunc.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o mathieu_charv.lo mathieu_charv.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c mathieu_charv.c  -fno-common -DPIC -o .libs/mathieu_charv.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o mathieu_coeff.lo mathieu_coeff.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c mathieu_coeff.c  -fno-common -DPIC -o .libs/mathieu_coeff.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o mathieu_radfunc.lo mathieu_radfunc.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c mathieu_radfunc.c  -fno-common -DPIC -o .libs/mathieu_radfunc.o
mathieu_radfunc.c:33:21: warning: variable 'mm' set but not used [-Wunused-but-set-variable]
  int even_odd, kk, mm, status;
                    ^
mathieu_radfunc.c:139:21: warning: variable 'mm' set but not used [-Wunused-but-set-variable]
  int even_odd, kk, mm, status;
                    ^
mathieu_radfunc.c:250:32: warning: variable 'mm' set but not used [-Wunused-but-set-variable]
  int even_odd, order, ii, kk, mm, status;
                               ^
mathieu_radfunc.c:356:32: warning: variable 'mm' set but not used [-Wunused-but-set-variable]
  int even_odd, order, ii, kk, mm, status;
                               ^
4 warnings generated.
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o mathieu_workspace.lo mathieu_workspace.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c mathieu_workspace.c  -fno-common -DPIC -o .libs/mathieu_workspace.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o poch.lo poch.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c poch.c  -fno-common -DPIC -o .libs/poch.o
poch.c:164:46: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value]
      result->err = 2.0 * GSL_DBL_EPSILON * (fabs(incr) + 1.0) * fabs(result->val);
                                             ^
poch.c:164:46: note: use function 'abs' instead
      result->err = 2.0 * GSL_DBL_EPSILON * (fabs(incr) + 1.0) * fabs(result->val);
                                             ^~~~
                                             abs
poch.c:164:46: note: include the header <stdlib.h> or explicitly provide a declaration for 'abs'
poch.c:179:47: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value]
      result->err += 2.0 * GSL_DBL_EPSILON * (fabs(incr) + 1.0) * fabs(result->val);
                                              ^
poch.c:179:47: note: use function 'abs' instead
      result->err += 2.0 * GSL_DBL_EPSILON * (fabs(incr) + 1.0) * fabs(result->val);
                                              ^~~~
                                              abs
poch.c:179:47: note: include the header <stdlib.h> or explicitly provide a declaration for 'abs'
2 warnings generated.
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o pow_int.lo pow_int.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c pow_int.c  -fno-common -DPIC -o .libs/pow_int.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o psi.lo psi.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c psi.c  -fno-common -DPIC -o .libs/psi.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o result.lo result.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c result.c  -fno-common -DPIC -o .libs/result.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o shint.lo shint.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c shint.c  -fno-common -DPIC -o .libs/shint.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o sinint.lo sinint.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c sinint.c  -fno-common -DPIC -o .libs/sinint.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o synchrotron.lo synchrotron.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c synchrotron.c  -fno-common -DPIC -o .libs/synchrotron.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o transport.lo transport.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c transport.c  -fno-common -DPIC -o .libs/transport.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o trig.lo trig.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c trig.c  -fno-common -DPIC -o .libs/trig.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o zeta.lo zeta.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c zeta.c  -fno-common -DPIC -o .libs/zeta.o
/bin/sh ../libtool --tag=CC   --mode=link clang -arch x86_64  -falign-functions=64 -Wall -g -O2  -L/opt/R/x86_64/lib -o libgslspecfunc.la  airy.lo airy_der.lo airy_zero.lo atanint.lo bessel.lo bessel_I0.lo bessel_I1.lo bessel_In.lo bessel_Inu.lo bessel_J0.lo bessel_J1.lo bessel_Jn.lo bessel_Jnu.lo bessel_K0.lo bessel_K1.lo bessel_Kn.lo bessel_Knu.lo bessel_Y0.lo bessel_Y1.lo bessel_Yn.lo bessel_Ynu.lo bessel_amp_phase.lo bessel_i.lo bessel_j.lo bessel_k.lo bessel_olver.lo bessel_temme.lo bessel_y.lo bessel_zero.lo bessel_sequence.lo beta.lo beta_inc.lo clausen.lo coulomb.lo coupling.lo coulomb_bound.lo dawson.lo debye.lo dilog.lo elementary.lo ellint.lo elljac.lo erfc.lo exp.lo expint.lo expint3.lo fermi_dirac.lo gegenbauer.lo gamma.lo gamma_inc.lo hyperg_0F1.lo hyperg_2F0.lo hyperg_1F1.lo hyperg_2F1.lo hyperg_U.lo hyperg.lo laguerre.lo lambert.lo legendre_H3d.lo legendre_Qn.lo legendre_con.lo legendre_poly.lo log.lo mathieu_angfunc.lo mathieu_charv.lo mathieu_coeff.lo mathieu_radfunc.lo mathieu_workspace.lo poch.lo pow_int.lo psi.lo result.lo shint.lo sinint.lo synchrotron.lo transport.lo trig.lo zeta.lo  -lm 
libtool: link: ar cru .libs/libgslspecfunc.a .libs/airy.o .libs/airy_der.o .libs/airy_zero.o .libs/atanint.o .libs/bessel.o .libs/bessel_I0.o .libs/bessel_I1.o .libs/bessel_In.o .libs/bessel_Inu.o .libs/bessel_J0.o .libs/bessel_J1.o .libs/bessel_Jn.o .libs/bessel_Jnu.o .libs/bessel_K0.o .libs/bessel_K1.o .libs/bessel_Kn.o .libs/bessel_Knu.o .libs/bessel_Y0.o .libs/bessel_Y1.o .libs/bessel_Yn.o .libs/bessel_Ynu.o .libs/bessel_amp_phase.o .libs/bessel_i.o .libs/bessel_j.o .libs/bessel_k.o .libs/bessel_olver.o .libs/bessel_temme.o .libs/bessel_y.o .libs/bessel_zero.o .libs/bessel_sequence.o .libs/beta.o .libs/beta_inc.o .libs/clausen.o .libs/coulomb.o .libs/coupling.o .libs/coulomb_bound.o .libs/dawson.o .libs/debye.o .libs/dilog.o .libs/elementary.o .libs/ellint.o .libs/elljac.o .libs/erfc.o .libs/exp.o .libs/expint.o .libs/expint3.o .libs/fermi_dirac.o .libs/gegenbauer.o .libs/gamma.o .libs/gamma_inc.o .libs/hyperg_0F1.o .libs/hyperg_2F0.o .libs/hyperg_1F1.o .libs/hyperg_2F1.o .libs/hyperg_U.o .libs/hyperg.o .libs/laguerre.o .libs/lambert.o .libs/legendre_H3d.o .libs/legendre_Qn.o .libs/legendre_con.o .libs/legendre_poly.o .libs/log.o .libs/mathieu_angfunc.o .libs/mathieu_charv.o .libs/mathieu_coeff.o .libs/mathieu_radfunc.o .libs/mathieu_workspace.o .libs/poch.o .libs/pow_int.o .libs/psi.o .libs/result.o .libs/shint.o .libs/sinint.o .libs/synchrotron.o .libs/transport.o .libs/trig.o .libs/zeta.o 
libtool: link: ranlib .libs/libgslspecfunc.a
libtool: link: ( cd ".libs" && rm -f "libgslspecfunc.la" && ln -s "../libgslspecfunc.la" "libgslspecfunc.la" )
make[2]: Nothing to be done for `install-exec-am'.
test -z "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl" || .././install-sh -c -d "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl"
 /usr/bin/install -c -m 644 gsl_sf.h gsl_sf_airy.h gsl_sf_bessel.h gsl_sf_clausen.h gsl_sf_coulomb.h gsl_sf_coupling.h gsl_sf_dawson.h gsl_sf_debye.h gsl_sf_dilog.h gsl_sf_elementary.h gsl_sf_ellint.h gsl_sf_elljac.h gsl_sf_erf.h gsl_sf_exp.h gsl_sf_expint.h gsl_sf_fermi_dirac.h gsl_sf_gamma.h gsl_sf_gegenbauer.h gsl_sf_hyperg.h gsl_sf_laguerre.h gsl_sf_lambert.h gsl_sf_legendre.h gsl_sf_log.h gsl_sf_mathieu.h gsl_sf_pow_int.h gsl_sf_psi.h gsl_sf_result.h gsl_sf_synchrotron.h gsl_sf_transport.h gsl_sf_trig.h gsl_sf_zeta.h gsl_specfunc.h '/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl'
Making install in linalg
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o multiply.lo multiply.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c multiply.c  -fno-common -DPIC -o .libs/multiply.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o exponential.lo exponential.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c exponential.c  -fno-common -DPIC -o .libs/exponential.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o tridiag.lo tridiag.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c tridiag.c  -fno-common -DPIC -o .libs/tridiag.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o lu.lo lu.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c lu.c  -fno-common -DPIC -o .libs/lu.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o luc.lo luc.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c luc.c  -fno-common -DPIC -o .libs/luc.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o hh.lo hh.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c hh.c  -fno-common -DPIC -o .libs/hh.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o qr.lo qr.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c qr.c  -fno-common -DPIC -o .libs/qr.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o qrpt.lo qrpt.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c qrpt.c  -fno-common -DPIC -o .libs/qrpt.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o lq.lo lq.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c lq.c  -fno-common -DPIC -o .libs/lq.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o ptlq.lo ptlq.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c ptlq.c  -fno-common -DPIC -o .libs/ptlq.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o svd.lo svd.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c svd.c  -fno-common -DPIC -o .libs/svd.o
In file included from svd.c:31:
./svdstep.c:379:34: warning: variable 'bq' set but not used [-Wunused-but-set-variable]
  double ak, bk, zk, ap, bp, aq, bq;
                                 ^
1 warning generated.
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o householder.lo householder.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c householder.c  -fno-common -DPIC -o .libs/householder.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o householdercomplex.lo householdercomplex.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c householdercomplex.c  -fno-common -DPIC -o .libs/householdercomplex.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o hessenberg.lo hessenberg.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c hessenberg.c  -fno-common -DPIC -o .libs/hessenberg.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o hesstri.lo hesstri.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c hesstri.c  -fno-common -DPIC -o .libs/hesstri.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o cholesky.lo cholesky.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c cholesky.c  -fno-common -DPIC -o .libs/cholesky.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o choleskyc.lo choleskyc.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c choleskyc.c  -fno-common -DPIC -o .libs/choleskyc.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o symmtd.lo symmtd.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c symmtd.c  -fno-common -DPIC -o .libs/symmtd.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o hermtd.lo hermtd.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c hermtd.c  -fno-common -DPIC -o .libs/hermtd.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o bidiag.lo bidiag.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c bidiag.c  -fno-common -DPIC -o .libs/bidiag.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o balance.lo balance.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c balance.c  -fno-common -DPIC -o .libs/balance.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o balancemat.lo balancemat.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c balancemat.c  -fno-common -DPIC -o .libs/balancemat.o
/bin/sh ../libtool --tag=CC   --mode=link clang -arch x86_64  -falign-functions=64 -Wall -g -O2  -L/opt/R/x86_64/lib -o libgsllinalg.la  multiply.lo exponential.lo tridiag.lo lu.lo luc.lo hh.lo qr.lo qrpt.lo lq.lo ptlq.lo svd.lo householder.lo householdercomplex.lo hessenberg.lo hesstri.lo cholesky.lo choleskyc.lo symmtd.lo hermtd.lo bidiag.lo balance.lo balancemat.lo  -lm 
libtool: link: ar cru .libs/libgsllinalg.a .libs/multiply.o .libs/exponential.o .libs/tridiag.o .libs/lu.o .libs/luc.o .libs/hh.o .libs/qr.o .libs/qrpt.o .libs/lq.o .libs/ptlq.o .libs/svd.o .libs/householder.o .libs/householdercomplex.o .libs/hessenberg.o .libs/hesstri.o .libs/cholesky.o .libs/choleskyc.o .libs/symmtd.o .libs/hermtd.o .libs/bidiag.o .libs/balance.o .libs/balancemat.o 
libtool: link: ranlib .libs/libgsllinalg.a
libtool: link: ( cd ".libs" && rm -f "libgsllinalg.la" && ln -s "../libgsllinalg.la" "libgsllinalg.la" )
make[2]: Nothing to be done for `install-exec-am'.
test -z "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl" || .././install-sh -c -d "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl"
 /usr/bin/install -c -m 644 gsl_linalg.h '/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl'
Making install in statistics
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o mean.lo mean.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c mean.c  -fno-common -DPIC -o .libs/mean.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o variance.lo variance.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c variance.c  -fno-common -DPIC -o .libs/variance.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o absdev.lo absdev.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c absdev.c  -fno-common -DPIC -o .libs/absdev.o
In file included from absdev.c:7:
./absdev_source.c:41:28: warning: absolute value function 'fabs' given an argument of type 'long double' but has parameter of type 'double' which may cause truncation of value [-Wabsolute-value]
      const double delta = fabs(data[i * stride] - mean);
                           ^
./absdev_source.c:41:28: note: use function 'fabsl' instead
      const double delta = fabs(data[i * stride] - mean);
                           ^~~~
                           fabsl
1 warning generated.
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o skew.lo skew.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c skew.c  -fno-common -DPIC -o .libs/skew.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o kurtosis.lo kurtosis.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c kurtosis.c  -fno-common -DPIC -o .libs/kurtosis.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o lag1.lo lag1.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c lag1.c  -fno-common -DPIC -o .libs/lag1.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o p_variance.lo p_variance.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c p_variance.c  -fno-common -DPIC -o .libs/p_variance.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o minmax.lo minmax.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c minmax.c  -fno-common -DPIC -o .libs/minmax.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o ttest.lo ttest.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c ttest.c  -fno-common -DPIC -o .libs/ttest.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o median.lo median.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c median.c  -fno-common -DPIC -o .libs/median.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o covariance.lo covariance.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c covariance.c  -fno-common -DPIC -o .libs/covariance.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o quantiles.lo quantiles.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c quantiles.c  -fno-common -DPIC -o .libs/quantiles.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o wmean.lo wmean.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c wmean.c  -fno-common -DPIC -o .libs/wmean.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o wvariance.lo wvariance.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c wvariance.c  -fno-common -DPIC -o .libs/wvariance.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o wabsdev.lo wabsdev.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c wabsdev.c  -fno-common -DPIC -o .libs/wabsdev.o
In file included from wabsdev.c:7:
./wabsdev_source.c:43:35: warning: absolute value function 'fabs' given an argument of type 'long double' but has parameter of type 'double' which may cause truncation of value [-Wabsolute-value]
        const long double delta = fabs(data[i * stride] - wmean);
                                  ^
./wabsdev_source.c:43:35: note: use function 'fabsl' instead
        const long double delta = fabs(data[i * stride] - wmean);
                                  ^~~~
                                  fabsl
1 warning generated.
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o wskew.lo wskew.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c wskew.c  -fno-common -DPIC -o .libs/wskew.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o wkurtosis.lo wkurtosis.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c wkurtosis.c  -fno-common -DPIC -o .libs/wkurtosis.o
/bin/sh ../libtool --tag=CC   --mode=link clang -arch x86_64  -falign-functions=64 -Wall -g -O2  -L/opt/R/x86_64/lib -o libgslstatistics.la  mean.lo variance.lo absdev.lo skew.lo kurtosis.lo lag1.lo p_variance.lo minmax.lo ttest.lo median.lo covariance.lo quantiles.lo wmean.lo wvariance.lo wabsdev.lo wskew.lo wkurtosis.lo  -lm 
libtool: link: ar cru .libs/libgslstatistics.a .libs/mean.o .libs/variance.o .libs/absdev.o .libs/skew.o .libs/kurtosis.o .libs/lag1.o .libs/p_variance.o .libs/minmax.o .libs/ttest.o .libs/median.o .libs/covariance.o .libs/quantiles.o .libs/wmean.o .libs/wvariance.o .libs/wabsdev.o .libs/wskew.o .libs/wkurtosis.o 
libtool: link: ranlib .libs/libgslstatistics.a
libtool: link: ( cd ".libs" && rm -f "libgslstatistics.la" && ln -s "../libgslstatistics.la" "libgslstatistics.la" )
make[2]: Nothing to be done for `install-exec-am'.
test -z "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl" || .././install-sh -c -d "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl"
 /usr/bin/install -c -m 644 gsl_statistics.h gsl_statistics_char.h gsl_statistics_double.h gsl_statistics_float.h gsl_statistics_int.h gsl_statistics_long.h gsl_statistics_long_double.h gsl_statistics_short.h gsl_statistics_uchar.h gsl_statistics_uint.h gsl_statistics_ulong.h gsl_statistics_ushort.h '/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl'
Making install in blas
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o blas.lo blas.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c blas.c  -fno-common -DPIC -o .libs/blas.o
/bin/sh ../libtool --tag=CC   --mode=link clang -arch x86_64  -falign-functions=64 -Wall -g -O2  -L/opt/R/x86_64/lib -o libgslblas.la  blas.lo  -lm 
libtool: link: ar cru .libs/libgslblas.a .libs/blas.o 
libtool: link: ranlib .libs/libgslblas.a
libtool: link: ( cd ".libs" && rm -f "libgslblas.la" && ln -s "../libgslblas.la" "libgslblas.la" )
make[2]: Nothing to be done for `install-exec-am'.
test -z "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl" || .././install-sh -c -d "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl"
 /usr/bin/install -c -m 644 gsl_blas.h gsl_blas_types.h '/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl'
Making install in roots
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o bisection.lo bisection.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c bisection.c  -fno-common -DPIC -o .libs/bisection.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o brent.lo brent.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c brent.c  -fno-common -DPIC -o .libs/brent.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o falsepos.lo falsepos.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c falsepos.c  -fno-common -DPIC -o .libs/falsepos.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o newton.lo newton.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c newton.c  -fno-common -DPIC -o .libs/newton.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o secant.lo secant.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c secant.c  -fno-common -DPIC -o .libs/secant.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o steffenson.lo steffenson.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c steffenson.c  -fno-common -DPIC -o .libs/steffenson.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o convergence.lo convergence.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c convergence.c  -fno-common -DPIC -o .libs/convergence.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o fsolver.lo fsolver.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c fsolver.c  -fno-common -DPIC -o .libs/fsolver.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o fdfsolver.lo fdfsolver.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c fdfsolver.c  -fno-common -DPIC -o .libs/fdfsolver.o
/bin/sh ../libtool --tag=CC   --mode=link clang -arch x86_64  -falign-functions=64 -Wall -g -O2  -L/opt/R/x86_64/lib -o libgslroots.la  bisection.lo brent.lo falsepos.lo newton.lo secant.lo steffenson.lo convergence.lo fsolver.lo fdfsolver.lo  -lm 
libtool: link: ar cru .libs/libgslroots.a .libs/bisection.o .libs/brent.o .libs/falsepos.o .libs/newton.o .libs/secant.o .libs/steffenson.o .libs/convergence.o .libs/fsolver.o .libs/fdfsolver.o 
libtool: link: ranlib .libs/libgslroots.a
libtool: link: ( cd ".libs" && rm -f "libgslroots.la" && ln -s "../libgslroots.la" "libgslroots.la" )
make[2]: Nothing to be done for `install-exec-am'.
test -z "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl" || .././install-sh -c -d "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl"
 /usr/bin/install -c -m 644 gsl_roots.h '/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl'
Making install in err
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I..   -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o error.lo error.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c error.c  -fno-common -DPIC -o .libs/error.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I..   -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o stream.lo stream.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c stream.c  -fno-common -DPIC -o .libs/stream.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I..   -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o message.lo message.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c message.c  -fno-common -DPIC -o .libs/message.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I..   -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o strerror.lo strerror.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c strerror.c  -fno-common -DPIC -o .libs/strerror.o
/bin/sh ../libtool --tag=CC   --mode=link clang -arch x86_64  -falign-functions=64 -Wall -g -O2  -L/opt/R/x86_64/lib -o libgslerr.la  error.lo stream.lo message.lo strerror.lo  -lm 
libtool: link: ar cru .libs/libgslerr.a .libs/error.o .libs/stream.o .libs/message.o .libs/strerror.o 
libtool: link: ranlib .libs/libgslerr.a
libtool: link: ( cd ".libs" && rm -f "libgslerr.la" && ln -s "../libgslerr.la" "libgslerr.la" )
make[2]: Nothing to be done for `install-exec-am'.
test -z "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl" || .././install-sh -c -d "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl"
 /usr/bin/install -c -m 644 gsl_errno.h gsl_message.h '/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl'
Making install in min
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o fsolver.lo fsolver.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c fsolver.c  -fno-common -DPIC -o .libs/fsolver.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o golden.lo golden.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c golden.c  -fno-common -DPIC -o .libs/golden.o
golden.c:49:27: warning: variable 'state' set but not used [-Wunused-but-set-variable]
  goldensection_state_t * state = (goldensection_state_t *) vstate;
                          ^
golden.c:68:27: warning: variable 'state' set but not used [-Wunused-but-set-variable]
  goldensection_state_t * state = (goldensection_state_t *) vstate;
                          ^
2 warnings generated.
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o brent.lo brent.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c brent.c  -fno-common -DPIC -o .libs/brent.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o convergence.lo convergence.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c convergence.c  -fno-common -DPIC -o .libs/convergence.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o bracketing.lo bracketing.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c bracketing.c  -fno-common -DPIC -o .libs/bracketing.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o quad_golden.lo quad_golden.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c quad_golden.c  -fno-common -DPIC -o .libs/quad_golden.o
/bin/sh ../libtool --tag=CC   --mode=link clang -arch x86_64  -falign-functions=64 -Wall -g -O2  -L/opt/R/x86_64/lib -o libgslmin.la  fsolver.lo golden.lo brent.lo convergence.lo bracketing.lo quad_golden.lo  -lm 
libtool: link: ar cru .libs/libgslmin.a .libs/fsolver.o .libs/golden.o .libs/brent.o .libs/convergence.o .libs/bracketing.o .libs/quad_golden.o 
libtool: link: ranlib .libs/libgslmin.a
libtool: link: ( cd ".libs" && rm -f "libgslmin.la" && ln -s "../libgslmin.la" "libgslmin.la" )
make[2]: Nothing to be done for `install-exec-am'.
test -z "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl" || .././install-sh -c -d "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl"
 /usr/bin/install -c -m 644 gsl_min.h '/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl'
Making install in permutation
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o init.lo init.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c init.c  -fno-common -DPIC -o .libs/init.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o file.lo file.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c file.c  -fno-common -DPIC -o .libs/file.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o permutation.lo permutation.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c permutation.c  -fno-common -DPIC -o .libs/permutation.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o permute.lo permute.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c permute.c  -fno-common -DPIC -o .libs/permute.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o canonical.lo canonical.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c canonical.c  -fno-common -DPIC -o .libs/canonical.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o inline.lo inline.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c inline.c  -fno-common -DPIC -o .libs/inline.o
/bin/sh ../libtool --tag=CC   --mode=link clang -arch x86_64  -falign-functions=64 -Wall -g -O2  -L/opt/R/x86_64/lib -o libgslpermutation.la  init.lo file.lo permutation.lo permute.lo canonical.lo inline.lo  -lm 
libtool: link: ar cru .libs/libgslpermutation.a .libs/init.o .libs/file.o .libs/permutation.o .libs/permute.o .libs/canonical.o .libs/inline.o 
libtool: link: ranlib .libs/libgslpermutation.a
libtool: link: ( cd ".libs" && rm -f "libgslpermutation.la" && ln -s "../libgslpermutation.la" "libgslpermutation.la" )
make[2]: Nothing to be done for `install-exec-am'.
test -z "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl" || .././install-sh -c -d "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl"
 /usr/bin/install -c -m 644 gsl_permutation.h gsl_permute.h gsl_permute_char.h gsl_permute_complex_double.h gsl_permute_complex_float.h gsl_permute_complex_long_double.h gsl_permute_double.h gsl_permute_float.h gsl_permute_int.h gsl_permute_long.h gsl_permute_long_double.h gsl_permute_short.h gsl_permute_uchar.h gsl_permute_uint.h gsl_permute_ulong.h gsl_permute_ushort.h gsl_permute_vector.h gsl_permute_vector_char.h gsl_permute_vector_complex_double.h gsl_permute_vector_complex_float.h gsl_permute_vector_complex_long_double.h gsl_permute_vector_double.h gsl_permute_vector_float.h gsl_permute_vector_int.h gsl_permute_vector_long.h gsl_permute_vector_long_double.h gsl_permute_vector_short.h gsl_permute_vector_uchar.h gsl_permute_vector_uint.h gsl_permute_vector_ulong.h gsl_permute_vector_ushort.h '/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl'
Making install in complex
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o math.lo math.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c math.c  -fno-common -DPIC -o .libs/math.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o inline.lo inline.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c inline.c  -fno-common -DPIC -o .libs/inline.o
/bin/sh ../libtool --tag=CC   --mode=link clang -arch x86_64  -falign-functions=64 -Wall -g -O2  -L/opt/R/x86_64/lib -o libgslcomplex.la  math.lo inline.lo  -lm 
libtool: link: ar cru .libs/libgslcomplex.a .libs/math.o .libs/inline.o 
libtool: link: ranlib .libs/libgslcomplex.a
libtool: link: ( cd ".libs" && rm -f "libgslcomplex.la" && ln -s "../libgslcomplex.la" "libgslcomplex.la" )
make[2]: Nothing to be done for `install-exec-am'.
test -z "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl" || .././install-sh -c -d "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl"
 /usr/bin/install -c -m 644 gsl_complex.h gsl_complex_math.h '/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl'
Making install in sys
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o minmax.lo minmax.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c minmax.c  -fno-common -DPIC -o .libs/minmax.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o prec.lo prec.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c prec.c  -fno-common -DPIC -o .libs/prec.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o hypot.lo hypot.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c hypot.c  -fno-common -DPIC -o .libs/hypot.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o log1p.lo log1p.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c log1p.c  -fno-common -DPIC -o .libs/log1p.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o expm1.lo expm1.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c expm1.c  -fno-common -DPIC -o .libs/expm1.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o coerce.lo coerce.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c coerce.c  -fno-common -DPIC -o .libs/coerce.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o invhyp.lo invhyp.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c invhyp.c  -fno-common -DPIC -o .libs/invhyp.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o pow_int.lo pow_int.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c pow_int.c  -fno-common -DPIC -o .libs/pow_int.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o infnan.lo infnan.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c infnan.c  -fno-common -DPIC -o .libs/infnan.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o fdiv.lo fdiv.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c fdiv.c  -fno-common -DPIC -o .libs/fdiv.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o fcmp.lo fcmp.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c fcmp.c  -fno-common -DPIC -o .libs/fcmp.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o ldfrexp.lo ldfrexp.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c ldfrexp.c  -fno-common -DPIC -o .libs/ldfrexp.o
ldfrexp.c:63:13: warning: 'finite' is deprecated: first deprecated in macOS 10.9 - Use `isfinite((double)x)` instead. [-Wdeprecated-declarations]
  else if (!finite (x))
            ^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/math.h:752:12: note: 'finite' has been explicitly marked deprecated here
extern int finite(double)
           ^
ldfrexp.c:88:12: warning: 'finite' is deprecated: first deprecated in macOS 10.9 - Use `isfinite((double)x)` instead. [-Wdeprecated-declarations]
      if (!finite (f))
           ^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/math.h:752:12: note: 'finite' has been explicitly marked deprecated here
extern int finite(double)
           ^
2 warnings generated.
/bin/sh ../libtool --tag=CC   --mode=link clang -arch x86_64  -falign-functions=64 -Wall -g -O2  -L/opt/R/x86_64/lib -o libgslsys.la  minmax.lo prec.lo hypot.lo log1p.lo expm1.lo coerce.lo invhyp.lo pow_int.lo infnan.lo fdiv.lo fcmp.lo ldfrexp.lo  -lm 
libtool: link: ar cru .libs/libgslsys.a .libs/minmax.o .libs/prec.o .libs/hypot.o .libs/log1p.o .libs/expm1.o .libs/coerce.o .libs/invhyp.o .libs/pow_int.o .libs/infnan.o .libs/fdiv.o .libs/fcmp.o .libs/ldfrexp.o 
libtool: link: ranlib .libs/libgslsys.a
libtool: link: ( cd ".libs" && rm -f "libgslsys.la" && ln -s "../libgslsys.la" "libgslsys.la" )
make[2]: Nothing to be done for `install-exec-am'.
test -z "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl" || .././install-sh -c -d "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl"
 /usr/bin/install -c -m 644 gsl_sys.h '/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl'
Making install in eigen
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o jacobi.lo jacobi.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c jacobi.c  -fno-common -DPIC -o .libs/jacobi.o
jacobi.c:142:15: warning: variable 'redsum' set but not used [-Wunused-but-set-variable]
  double red, redsum = 0.0;
              ^
1 warning generated.
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o symm.lo symm.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c symm.c  -fno-common -DPIC -o .libs/symm.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o symmv.lo symmv.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c symmv.c  -fno-common -DPIC -o .libs/symmv.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o nonsymm.lo nonsymm.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c nonsymm.c  -fno-common -DPIC -o .libs/nonsymm.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o nonsymmv.lo nonsymmv.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c nonsymmv.c  -fno-common -DPIC -o .libs/nonsymmv.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o herm.lo herm.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c herm.c  -fno-common -DPIC -o .libs/herm.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o hermv.lo hermv.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c hermv.c  -fno-common -DPIC -o .libs/hermv.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o gensymm.lo gensymm.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c gensymm.c  -fno-common -DPIC -o .libs/gensymm.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o gensymmv.lo gensymmv.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c gensymmv.c  -fno-common -DPIC -o .libs/gensymmv.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o genherm.lo genherm.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c genherm.c  -fno-common -DPIC -o .libs/genherm.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o genhermv.lo genhermv.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c genhermv.c  -fno-common -DPIC -o .libs/genhermv.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o gen.lo gen.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c gen.c  -fno-common -DPIC -o .libs/gen.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o genv.lo genv.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c genv.c  -fno-common -DPIC -o .libs/genv.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o sort.lo sort.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c sort.c  -fno-common -DPIC -o .libs/sort.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o francis.lo francis.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c francis.c  -fno-common -DPIC -o .libs/francis.o
/bin/sh ../libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I..  -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o schur.lo schur.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c schur.c  -fno-common -DPIC -o .libs/schur.o
/bin/sh ../libtool --tag=CC   --mode=link clang -arch x86_64  -falign-functions=64 -Wall -g -O2  -L/opt/R/x86_64/lib -o libgsleigen.la  jacobi.lo symm.lo symmv.lo nonsymm.lo nonsymmv.lo herm.lo hermv.lo gensymm.lo gensymmv.lo genherm.lo genhermv.lo gen.lo genv.lo sort.lo francis.lo schur.lo  -lm 
libtool: link: ar cru .libs/libgsleigen.a .libs/jacobi.o .libs/symm.o .libs/symmv.o .libs/nonsymm.o .libs/nonsymmv.o .libs/herm.o .libs/hermv.o .libs/gensymm.o .libs/gensymmv.o .libs/genherm.o .libs/genhermv.o .libs/gen.o .libs/genv.o .libs/sort.o .libs/francis.o .libs/schur.o 
libtool: link: ranlib .libs/libgsleigen.a
libtool: link: ( cd ".libs" && rm -f "libgsleigen.la" && ln -s "../libgsleigen.la" "libgsleigen.la" )
make[2]: Nothing to be done for `install-exec-am'.
test -z "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl" || .././install-sh -c -d "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl"
 /usr/bin/install -c -m 644 gsl_eigen.h '/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl'
/bin/sh ./libtool --tag=CC   --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I.   -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c -o version.lo version.c
libtool: compile:  clang -arch x86_64 -DHAVE_CONFIG_H -I. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c version.c  -fno-common -DPIC -o .libs/version.o
/bin/sh ./libtool --tag=CC   --mode=link clang -arch x86_64  -falign-functions=64 -Wall -g -O2 -version-info 14:0:14  -L/opt/R/x86_64/lib -o libgsl.la -rpath /Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/lib version.lo block/libgslblock.la matrix/libgslmatrix.la vector/libgslvector.la rng/libgslrng.la randist/libgslrandist.la cdf/libgslcdf.la cblas/libgslcblas.la specfunc/libgslspecfunc.la linalg/libgsllinalg.la statistics/libgslstatistics.la blas/libgslblas.la roots/libgslroots.la err/libgslerr.la min/libgslmin.la permutation/libgslpermutation.la complex/libgslcomplex.la sys/libgslsys.la eigen/libgsleigen.la  -lm 
libtool: link: (cd .libs/libgsl.lax/libgslblock.a && ar x "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gsl-1.13/block/.libs/libgslblock.a")
libtool: link: (cd .libs/libgsl.lax/libgslmatrix.a && ar x "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gsl-1.13/matrix/.libs/libgslmatrix.a")
libtool: link: (cd .libs/libgsl.lax/libgslvector.a && ar x "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gsl-1.13/vector/.libs/libgslvector.a")
libtool: link: (cd .libs/libgsl.lax/libgslrng.a && ar x "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gsl-1.13/rng/.libs/libgslrng.a")
libtool: link: (cd .libs/libgsl.lax/libgslrandist.a && ar x "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gsl-1.13/randist/.libs/libgslrandist.a")
libtool: link: (cd .libs/libgsl.lax/libgslcdf.a && ar x "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gsl-1.13/cdf/.libs/libgslcdf.a")
libtool: link: (cd .libs/libgsl.lax/libgslspecfunc.a && ar x "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gsl-1.13/specfunc/.libs/libgslspecfunc.a")
libtool: link: (cd .libs/libgsl.lax/libgsllinalg.a && ar x "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gsl-1.13/linalg/.libs/libgsllinalg.a")
libtool: link: (cd .libs/libgsl.lax/libgslstatistics.a && ar x "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gsl-1.13/statistics/.libs/libgslstatistics.a")
libtool: link: (cd .libs/libgsl.lax/libgslblas.a && ar x "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gsl-1.13/blas/.libs/libgslblas.a")
libtool: link: (cd .libs/libgsl.lax/libgslroots.a && ar x "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gsl-1.13/roots/.libs/libgslroots.a")
libtool: link: (cd .libs/libgsl.lax/libgslerr.a && ar x "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gsl-1.13/err/.libs/libgslerr.a")
libtool: link: (cd .libs/libgsl.lax/libgslmin.a && ar x "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gsl-1.13/min/.libs/libgslmin.a")
libtool: link: (cd .libs/libgsl.lax/libgslpermutation.a && ar x "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gsl-1.13/permutation/.libs/libgslpermutation.a")
libtool: link: (cd .libs/libgsl.lax/libgslcomplex.a && ar x "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gsl-1.13/complex/.libs/libgslcomplex.a")
libtool: link: (cd .libs/libgsl.lax/libgslsys.a && ar x "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gsl-1.13/sys/.libs/libgslsys.a")
libtool: link: (cd .libs/libgsl.lax/libgsleigen.a && ar x "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gsl-1.13/eigen/.libs/libgsleigen.a")
libtool: link: clang -arch x86_64 -dynamiclib  -o .libs/libgsl.0.dylib  .libs/version.o   .libs/libgsl.lax/libgslblock.a/file.o .libs/libgsl.lax/libgslblock.a/block.o .libs/libgsl.lax/libgslblock.a/init.o  .libs/libgsl.lax/libgslmatrix.a/minmax.o .libs/libgsl.lax/libgslmatrix.a/getset.o .libs/libgsl.lax/libgslmatrix.a/file.o .libs/libgsl.lax/libgslmatrix.a/swap.o .libs/libgsl.lax/libgslmatrix.a/oper.o .libs/libgsl.lax/libgslmatrix.a/matrix.o .libs/libgsl.lax/libgslmatrix.a/view.o .libs/libgsl.lax/libgslmatrix.a/prop.o .libs/libgsl.lax/libgslmatrix.a/init.o .libs/libgsl.lax/libgslmatrix.a/rowcol.o .libs/libgsl.lax/libgslmatrix.a/submatrix.o .libs/libgsl.lax/libgslmatrix.a/copy.o  .libs/libgsl.lax/libgslvector.a/minmax.o .libs/libgsl.lax/libgslvector.a/reim.o .libs/libgsl.lax/libgslvector.a/file.o .libs/libgsl.lax/libgslvector.a/subvector.o .libs/libgsl.lax/libgslvector.a/swap.o .libs/libgsl.lax/libgslvector.a/oper.o .libs/libgsl.lax/libgslvector.a/view.o .libs/libgsl.lax/libgslvector.a/prop.o .libs/libgsl.lax/libgslvector.a/init.o .libs/libgsl.lax/libgslvector.a/vector.o .libs/libgsl.lax/libgslvector.a/copy.o  .libs/libgsl.lax/libgslrng.a/gfsr4.o .libs/libgsl.lax/libgslrng.a/ran2.o .libs/libgsl.lax/libgslrng.a/ranlxd.o .libs/libgsl.lax/libgslrng.a/ranmar.o .libs/libgsl.lax/libgslrng.a/r250.o .libs/libgsl.lax/libgslrng.a/uni32.o .libs/libgsl.lax/libgslrng.a/ranf.o .libs/libgsl.lax/libgslrng.a/types.o .libs/libgsl.lax/libgslrng.a/vax.o .libs/libgsl.lax/libgslrng.a/file.o .libs/libgsl.lax/libgslrng.a/knuthran.o .libs/libgsl.lax/libgslrng.a/slatec.o .libs/libgsl.lax/libgslrng.a/randu.o .libs/libgsl.lax/libgslrng.a/uni.o .libs/libgsl.lax/libgslrng.a/ran1.o .libs/libgsl.lax/libgslrng.a/minstd.o .libs/libgsl.lax/libgslrng.a/inline.o .libs/libgsl.lax/libgslrng.a/rng.o .libs/libgsl.lax/libgslrng.a/taus113.o .libs/libgsl.lax/libgslrng.a/knuthran2.o .libs/libgsl.lax/libgslrng.a/knuthran2002.o .libs/libgsl.lax/libgslrng.a/zuf.o .libs/libgsl.lax/libgslrng.a/cmrg.o .libs/libgsl.lax/libgslrng.a/fishman18.o .libs/libgsl.lax/libgslrng.a/ran0.o .libs/libgsl.lax/libgslrng.a/rand48.o .libs/libgsl.lax/libgslrng.a/ranlux.o .libs/libgsl.lax/libgslrng.a/borosh13.o .libs/libgsl.lax/libgslrng.a/rand.o .libs/libgsl.lax/libgslrng.a/mrg.o .libs/libgsl.lax/libgslrng.a/transputer.o .libs/libgsl.lax/libgslrng.a/ran3.o .libs/libgsl.lax/libgslrng.a/waterman14.o .libs/libgsl.lax/libgslrng.a/mt.o .libs/libgsl.lax/libgslrng.a/lecuyer21.o .libs/libgsl.lax/libgslrng.a/fishman20.o .libs/libgsl.lax/libgslrng.a/ranlxs.o .libs/libgsl.lax/libgslrng.a/tt.o .libs/libgsl.lax/libgslrng.a/default.o .libs/libgsl.lax/libgslrng.a/random.o .libs/libgsl.lax/libgslrng.a/fishman2x.o .libs/libgsl.lax/libgslrng.a/taus.o .libs/libgsl.lax/libgslrng.a/coveyou.o  .libs/libgsl.lax/libgslrandist.a/dirichlet.o .libs/libgsl.lax/libgslrandist.a/multinomial.o .libs/libgsl.lax/libgslrandist.a/levy.o .libs/libgsl.lax/libgslrandist.a/pareto.o .libs/libgsl.lax/libgslrandist.a/binomial.o .libs/libgsl.lax/libgslrandist.a/laplace.o .libs/libgsl.lax/libgslrandist.a/gausszig.o .libs/libgsl.lax/libgslrandist.a/poisson.o .libs/libgsl.lax/libgslrandist.a/beta.o .libs/libgsl.lax/libgslrandist.a/weibull.o .libs/libgsl.lax/libgslrandist.a/discrete.o .libs/libgsl.lax/libgslrandist.a/binomial_tpe.o .libs/libgsl.lax/libgslrandist.a/logistic.o .libs/libgsl.lax/libgslrandist.a/sphere.o .libs/libgsl.lax/libgslrandist.a/erlang.o .libs/libgsl.lax/libgslrandist.a/tdist.o .libs/libgsl.lax/libgslrandist.a/chisq.o .libs/libgsl.lax/libgslrandist.a/rayleigh.o .libs/libgsl.lax/libgslrandist.a/lognormal.o .libs/libgsl.lax/libgslrandist.a/nbinomial.o .libs/libgsl.lax/libgslrandist.a/gumbel.o .libs/libgsl.lax/libgslrandist.a/exppow.o .libs/libgsl.lax/libgslrandist.a/logarithmic.o .libs/libgsl.lax/libgslrandist.a/bigauss.o .libs/libgsl.lax/libgslrandist.a/gausstail.o .libs/libgsl.lax/libgslrandist.a/bernoulli.o .libs/libgsl.lax/libgslrandist.a/gauss.o .libs/libgsl.lax/libgslrandist.a/gamma.o .libs/libgsl.lax/libgslrandist.a/flat.o .libs/libgsl.lax/libgslrandist.a/cauchy.o .libs/libgsl.lax/libgslrandist.a/fdist.o .libs/libgsl.lax/libgslrandist.a/hyperg.o .libs/libgsl.lax/libgslrandist.a/geometric.o .libs/libgsl.lax/libgslrandist.a/landau.o .libs/libgsl.lax/libgslrandist.a/exponential.o .libs/libgsl.lax/libgslrandist.a/shuffle.o .libs/libgsl.lax/libgslrandist.a/pascal.o  .libs/libgsl.lax/libgslcdf.a/pareto.o .libs/libgsl.lax/libgslcdf.a/binomial.o .libs/libgsl.lax/libgslcdf.a/logisticinv.o .libs/libgsl.lax/libgslcdf.a/laplace.o .libs/libgsl.lax/libgslcdf.a/poisson.o .libs/libgsl.lax/libgslcdf.a/beta.o .libs/libgsl.lax/libgslcdf.a/weibull.o .libs/libgsl.lax/libgslcdf.a/tdistinv.o .libs/libgsl.lax/libgslcdf.a/laplaceinv.o .libs/libgsl.lax/libgslcdf.a/logistic.o .libs/libgsl.lax/libgslcdf.a/betainv.o .libs/libgsl.lax/libgslcdf.a/hypergeometric.o .libs/libgsl.lax/libgslcdf.a/tdist.o .libs/libgsl.lax/libgslcdf.a/chisq.o .libs/libgsl.lax/libgslcdf.a/rayleigh.o .libs/libgsl.lax/libgslcdf.a/fdistinv.o .libs/libgsl.lax/libgslcdf.a/lognormal.o .libs/libgsl.lax/libgslcdf.a/gumbel2inv.o .libs/libgsl.lax/libgslcdf.a/nbinomial.o .libs/libgsl.lax/libgslcdf.a/weibullinv.o .libs/libgsl.lax/libgslcdf.a/gumbel1inv.o .libs/libgsl.lax/libgslcdf.a/gaussinv.o .libs/libgsl.lax/libgslcdf.a/gammainv.o .libs/libgsl.lax/libgslcdf.a/exppow.o .libs/libgsl.lax/libgslcdf.a/flatinv.o .libs/libgsl.lax/libgslcdf.a/gumbel2.o .libs/libgsl.lax/libgslcdf.a/lognormalinv.o .libs/libgsl.lax/libgslcdf.a/gauss.o .libs/libgsl.lax/libgslcdf.a/gamma.o .libs/libgsl.lax/libgslcdf.a/paretoinv.o .libs/libgsl.lax/libgslcdf.a/flat.o .libs/libgsl.lax/libgslcdf.a/cauchy.o .libs/libgsl.lax/libgslcdf.a/rayleighinv.o .libs/libgsl.lax/libgslcdf.a/fdist.o .libs/libgsl.lax/libgslcdf.a/gumbel1.o .libs/libgsl.lax/libgslcdf.a/geometric.o .libs/libgsl.lax/libgslcdf.a/cauchyinv.o .libs/libgsl.lax/libgslcdf.a/exponentialinv.o .libs/libgsl.lax/libgslcdf.a/chisqinv.o .libs/libgsl.lax/libgslcdf.a/exponential.o .libs/libgsl.lax/libgslcdf.a/pascal.o  .libs/libgsl.lax/libgslspecfunc.a/bessel_Inu.o .libs/libgsl.lax/libgslspecfunc.a/zeta.o .libs/libgsl.lax/libgslspecfunc.a/gegenbauer.o .libs/libgsl.lax/libgslspecfunc.a/bessel_Y0.o .libs/libgsl.lax/libgslspecfunc.a/shint.o .libs/libgsl.lax/libgslspecfunc.a/beta_inc.o .libs/libgsl.lax/libgslspecfunc.a/bessel_Jnu.o .libs/libgsl.lax/libgslspecfunc.a/ellint.o .libs/libgsl.lax/libgslspecfunc.a/debye.o .libs/libgsl.lax/libgslspecfunc.a/bessel_Knu.o .libs/libgsl.lax/libgslspecfunc.a/laguerre.o .libs/libgsl.lax/libgslspecfunc.a/expint.o .libs/libgsl.lax/libgslspecfunc.a/coulomb.o .libs/libgsl.lax/libgslspecfunc.a/legendre_con.o .libs/libgsl.lax/libgslspecfunc.a/mathieu_coeff.o .libs/libgsl.lax/libgslspecfunc.a/mathieu_radfunc.o .libs/libgsl.lax/libgslspecfunc.a/mathieu_workspace.o .libs/libgsl.lax/libgslspecfunc.a/lambert.o .libs/libgsl.lax/libgslspecfunc.a/bessel_Ynu.o .libs/libgsl.lax/libgslspecfunc.a/expint3.o .libs/libgsl.lax/libgslspecfunc.a/beta.o .libs/libgsl.lax/libgslspecfunc.a/bessel_Yn.o .libs/libgsl.lax/libgslspecfunc.a/hyperg_2F0.o .libs/libgsl.lax/libgslspecfunc.a/dilog.o .libs/libgsl.lax/libgslspecfunc.a/bessel_sequence.o .libs/libgsl.lax/libgslspecfunc.a/airy_zero.o .libs/libgsl.lax/libgslspecfunc.a/coulomb_bound.o .libs/libgsl.lax/libgslspecfunc.a/psi.o .libs/libgsl.lax/libgslspecfunc.a/legendre_poly.o .libs/libgsl.lax/libgslspecfunc.a/bessel_Jn.o .libs/libgsl.lax/libgslspecfunc.a/bessel_I1.o .libs/libgsl.lax/libgslspecfunc.a/bessel_y.o .libs/libgsl.lax/libgslspecfunc.a/mathieu_charv.o .libs/libgsl.lax/libgslspecfunc.a/bessel_K0.o .libs/libgsl.lax/libgslspecfunc.a/result.o .libs/libgsl.lax/libgslspecfunc.a/bessel_k.o .libs/libgsl.lax/libgslspecfunc.a/bessel_J0.o .libs/libgsl.lax/libgslspecfunc.a/atanint.o .libs/libgsl.lax/libgslspecfunc.a/mathieu_angfunc.o .libs/libgsl.lax/libgslspecfunc.a/trig.o .libs/libgsl.lax/libgslspecfunc.a/bessel_Kn.o .libs/libgsl.lax/libgslspecfunc.a/synchrotron.o .libs/libgsl.lax/libgslspecfunc.a/erfc.o .libs/libgsl.lax/libgslspecfunc.a/legendre_H3d.o .libs/libgsl.lax/libgslspecfunc.a/sinint.o .libs/libgsl.lax/libgslspecfunc.a/bessel_I0.o .libs/libgsl.lax/libgslspecfunc.a/elljac.o .libs/libgsl.lax/libgslspecfunc.a/dawson.o .libs/libgsl.lax/libgslspecfunc.a/bessel_K1.o .libs/libgsl.lax/libgslspecfunc.a/log.o .libs/libgsl.lax/libgslspecfunc.a/bessel_j.o .libs/libgsl.lax/libgslspecfunc.a/bessel_In.o .libs/libgsl.lax/libgslspecfunc.a/legendre_Qn.o .libs/libgsl.lax/libgslspecfunc.a/bessel_J1.o .libs/libgsl.lax/libgslspecfunc.a/bessel.o .libs/libgsl.lax/libgslspecfunc.a/gamma.o .libs/libgsl.lax/libgslspecfunc.a/airy_der.o .libs/libgsl.lax/libgslspecfunc.a/transport.o .libs/libgsl.lax/libgslspecfunc.a/coupling.o .libs/libgsl.lax/libgslspecfunc.a/poch.o .libs/libgsl.lax/libgslspecfunc.a/airy.o .libs/libgsl.lax/libgslspecfunc.a/gamma_inc.o .libs/libgsl.lax/libgslspecfunc.a/bessel_temme.o .libs/libgsl.lax/libgslspecfunc.a/hyperg_U.o .libs/libgsl.lax/libgslspecfunc.a/exp.o .libs/libgsl.lax/libgslspecfunc.a/hyperg.o .libs/libgsl.lax/libgslspecfunc.a/bessel_Y1.o .libs/libgsl.lax/libgslspecfunc.a/pow_int.o .libs/libgsl.lax/libgslspecfunc.a/bessel_amp_phase.o .libs/libgsl.lax/libgslspecfunc.a/bessel_olver.o .libs/libgsl.lax/libgslspecfunc.a/hyperg_1F1.o .libs/libgsl.lax/libgslspecfunc.a/hyperg_0F1.o .libs/libgsl.lax/libgslspecfunc.a/bessel_i.o .libs/libgsl.lax/libgslspecfunc.a/elementary.o .libs/libgsl.lax/libgslspecfunc.a/hyperg_2F1.o .libs/libgsl.lax/libgslspecfunc.a/clausen.o .libs/libgsl.lax/libgslspecfunc.a/fermi_dirac.o .libs/libgsl.lax/libgslspecfunc.a/bessel_zero.o  .libs/libgsl.lax/libgsllinalg.a/qrpt.o .libs/libgsl.lax/libgsllinalg.a/balance.o .libs/libgsl.lax/libgsllinalg.a/lu.o .libs/libgsl.lax/libgsllinalg.a/svd.o .libs/libgsl.lax/libgsllinalg.a/hermtd.o .libs/libgsl.lax/libgsllinalg.a/tridiag.o .libs/libgsl.lax/libgsllinalg.a/lq.o .libs/libgsl.lax/libgsllinalg.a/householder.o .libs/libgsl.lax/libgsllinalg.a/multiply.o .libs/libgsl.lax/libgsllinalg.a/qr.o .libs/libgsl.lax/libgsllinalg.a/luc.o .libs/libgsl.lax/libgsllinalg.a/choleskyc.o .libs/libgsl.lax/libgsllinalg.a/householdercomplex.o .libs/libgsl.lax/libgsllinalg.a/hesstri.o .libs/libgsl.lax/libgsllinalg.a/symmtd.o .libs/libgsl.lax/libgsllinalg.a/bidiag.o .libs/libgsl.lax/libgsllinalg.a/cholesky.o .libs/libgsl.lax/libgsllinalg.a/hh.o .libs/libgsl.lax/libgsllinalg.a/ptlq.o .libs/libgsl.lax/libgsllinalg.a/hessenberg.o .libs/libgsl.lax/libgsllinalg.a/balancemat.o .libs/libgsl.lax/libgsllinalg.a/exponential.o  .libs/libgsl.lax/libgslstatistics.a/ttest.o .libs/libgsl.lax/libgslstatistics.a/minmax.o .libs/libgsl.lax/libgslstatistics.a/kurtosis.o .libs/libgsl.lax/libgslstatistics.a/wkurtosis.o .libs/libgsl.lax/libgslstatistics.a/wabsdev.o .libs/libgsl.lax/libgslstatistics.a/quantiles.o .libs/libgsl.lax/libgslstatistics.a/lag1.o .libs/libgsl.lax/libgslstatistics.a/median.o .libs/libgsl.lax/libgslstatistics.a/mean.o .libs/libgsl.lax/libgslstatistics.a/wmean.o .libs/libgsl.lax/libgslstatistics.a/wvariance.o .libs/libgsl.lax/libgslstatistics.a/skew.o .libs/libgsl.lax/libgslstatistics.a/absdev.o .libs/libgsl.lax/libgslstatistics.a/p_variance.o .libs/libgsl.lax/libgslstatistics.a/wskew.o .libs/libgsl.lax/libgslstatistics.a/covariance.o .libs/libgsl.lax/libgslstatistics.a/variance.o  .libs/libgsl.lax/libgslblas.a/blas.o  .libs/libgsl.lax/libgslroots.a/fsolver.o .libs/libgsl.lax/libgslroots.a/convergence.o .libs/libgsl.lax/libgslroots.a/bisection.o .libs/libgsl.lax/libgslroots.a/steffenson.o .libs/libgsl.lax/libgslroots.a/secant.o .libs/libgsl.lax/libgslroots.a/newton.o .libs/libgsl.lax/libgslroots.a/brent.o .libs/libgsl.lax/libgslroots.a/falsepos.o .libs/libgsl.lax/libgslroots.a/fdfsolver.o  .libs/libgsl.lax/libgslerr.a/error.o .libs/libgsl.lax/libgslerr.a/strerror.o .libs/libgsl.lax/libgslerr.a/message.o .libs/libgsl.lax/libgslerr.a/stream.o  .libs/libgsl.lax/libgslmin.a/bracketing.o .libs/libgsl.lax/libgslmin.a/fsolver.o .libs/libgsl.lax/libgslmin.a/convergence.o .libs/libgsl.lax/libgslmin.a/golden.o .libs/libgsl.lax/libgslmin.a/quad_golden.o .libs/libgsl.lax/libgslmin.a/brent.o  .libs/libgsl.lax/libgslpermutation.a/permute.o .libs/libgsl.lax/libgslpermutation.a/file.o .libs/libgsl.lax/libgslpermutation.a/permutation.o .libs/libgsl.lax/libgslpermutation.a/inline.o .libs/libgsl.lax/libgslpermutation.a/canonical.o .libs/libgsl.lax/libgslpermutation.a/init.o  .libs/libgsl.lax/libgslcomplex.a/inline.o .libs/libgsl.lax/libgslcomplex.a/math.o  .libs/libgsl.lax/libgslsys.a/minmax.o .libs/libgsl.lax/libgslsys.a/log1p.o .libs/libgsl.lax/libgslsys.a/hypot.o .libs/libgsl.lax/libgslsys.a/expm1.o .libs/libgsl.lax/libgslsys.a/fdiv.o .libs/libgsl.lax/libgslsys.a/prec.o .libs/libgsl.lax/libgslsys.a/coerce.o .libs/libgsl.lax/libgslsys.a/invhyp.o .libs/libgsl.lax/libgslsys.a/infnan.o .libs/libgsl.lax/libgslsys.a/ldfrexp.o .libs/libgsl.lax/libgslsys.a/fcmp.o .libs/libgsl.lax/libgslsys.a/pow_int.o  .libs/libgsl.lax/libgsleigen.a/genhermv.o .libs/libgsl.lax/libgsleigen.a/schur.o .libs/libgsl.lax/libgsleigen.a/gensymm.o .libs/libgsl.lax/libgsleigen.a/herm.o .libs/libgsl.lax/libgsleigen.a/gen.o .libs/libgsl.lax/libgsleigen.a/nonsymm.o .libs/libgsl.lax/libgsleigen.a/gensymmv.o .libs/libgsl.lax/libgsleigen.a/nonsymmv.o .libs/libgsl.lax/libgsleigen.a/hermv.o .libs/libgsl.lax/libgsleigen.a/genv.o .libs/libgsl.lax/libgsleigen.a/jacobi.o .libs/libgsl.lax/libgsleigen.a/symm.o .libs/libgsl.lax/libgsleigen.a/symmv.o .libs/libgsl.lax/libgsleigen.a/sort.o .libs/libgsl.lax/libgsleigen.a/genherm.o .libs/libgsl.lax/libgsleigen.a/francis.o   -L/opt/R/x86_64/lib cblas/.libs/libgslcblas.dylib -lm  -arch x86_64   -install_name  /Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/lib/libgsl.0.dylib -compatibility_version 15 -current_version 15.0 -Wl,-single_module
libtool: link: dsymutil .libs/libgsl.0.dylib || :
libtool: link: (cd ".libs" && rm -f "libgsl.dylib" && ln -s "libgsl.0.dylib" "libgsl.dylib")
libtool: link: rm -fr .libs/libgsl.lax
libtool: link: ( cd ".libs" && rm -f "libgsl.la" && ln -s "../libgsl.la" "libgsl.la" )
clang -arch x86_64 -DHAVE_CONFIG_H -I.   -I/opt/R/x86_64/include  -falign-functions=64 -Wall -g -O2 -c gsl-randist.c
/bin/sh ./libtool --tag=CC   --mode=link clang -arch x86_64  -falign-functions=64 -Wall -g -O2  -L/opt/R/x86_64/lib -o gsl-randist gsl-randist.o libgsl.la cblas/libgslcblas.la -lm 
libtool: link: clang -arch x86_64 -falign-functions=64 -Wall -g -O2 -o .libs/gsl-randist gsl-randist.o  -L/opt/R/x86_64/lib ./.libs/libgsl.dylib /Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gsl-1.13/cblas/.libs/libgslcblas.dylib cblas/.libs/libgslcblas.dylib -lm
creating gsl-config
creating gsl.pc
test -z "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/lib" || ./install-sh -c -d "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/lib"
 /bin/sh ./libtool   --mode=install /usr/bin/install -c   libgsl.la '/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/lib'
libtool: install: /usr/bin/install -c .libs/libgsl.0.dylib /Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/lib/libgsl.0.dylib
libtool: install: (cd /Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/lib && { ln -s -f libgsl.0.dylib libgsl.dylib || { rm -f libgsl.dylib && ln -s libgsl.0.dylib libgsl.dylib; }; })
libtool: install: /usr/bin/install -c .libs/libgsl.lai /Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/lib/libgsl.la
----------------------------------------------------------------------
Libraries have been installed in:
   /Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/lib

If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
   - add LIBDIR to the `DYLD_LIBRARY_PATH' environment variable
     during execution

See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
test -z "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/bin" || ./install-sh -c -d "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/bin"
  /bin/sh ./libtool   --mode=install /usr/bin/install -c gsl-randist '/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/bin'
libtool: install: /usr/bin/install -c .libs/gsl-randist /Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/bin/gsl-randist
test -z "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/bin" || ./install-sh -c -d "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/bin"
 /usr/bin/install -c gsl-config '/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/bin'
test -z "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/share/aclocal" || ./install-sh -c -d "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/share/aclocal"
 /usr/bin/install -c -m 644 gsl.m4 '/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/share/aclocal'
test -z "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/lib/pkgconfig" || ./install-sh -c -d "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/lib/pkgconfig"
 /usr/bin/install -c -m 644 gsl.pc '/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/lib/pkgconfig'
test -z "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl" || ./install-sh -c -d "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl"
 /usr/bin/install -c -m 644 gsl_math.h gsl_pow_int.h gsl_nan.h gsl_machine.h gsl_mode.h gsl_precision.h gsl_types.h gsl_version.h gsl_minmax.h gsl_inline.h '/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl'
configure: Using the following compilation and linking flags for flowClust
configure:    PKG_CFLAGS= -I/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include
configure:    PKG_LIBS=
configure:    FLOWCLUST_DEFS=-DGSL_MAJOR=1 -DGSL_MINOR=13 -DGSL_STATIC
configure: Compiling using GSL version: '1.13.0'.
configure: Using bundled GSL: 'yes'.
configure: creating ./config.status
config.status: creating src/Makevars
** libs
using C compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
using SDK: ‘MacOSX11.3.sdk’
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/x86_64/include   -I/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include -DGSL_MAJOR=1 -DGSL_MINOR=13 -DGSL_STATIC -fPIC  -falign-functions=64 -Wall -g -O2  -c BoxCox.c -o BoxCox.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/x86_64/include   -I/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include -DGSL_MAJOR=1 -DGSL_MINOR=13 -DGSL_STATIC -fPIC  -falign-functions=64 -Wall -g -O2  -c BoxCoxPriors.c -o BoxCoxPriors.o
BoxCoxPriors.c:31:6: warning: unused variable 'iter' [-Wunused-variable]
        int iter = p->iter;
            ^
BoxCoxPriors.c:23:14: warning: unused variable 'SumZlogY' [-Wunused-variable]
        gsl_vector *SumZlogY = p->SumZlogY;
                    ^
BoxCoxPriors.c:32:7: warning: unused variable 'itersolve' [-Wunused-variable]
        int *itersolve = p->itersolve;
             ^
BoxCoxPriors.c:15:14: warning: unused variable 'Precision' [-Wunused-variable]
        gsl_matrix *Precision = p->Precision; // will be updated
                    ^
BoxCoxPriors.c:33:24: warning: unused variable 'kappa0' [-Wunused-variable]
        double *nu0 = p->nu0, kappa0 = p->kappa0;
                              ^
BoxCoxPriors.c:28:6: warning: unused variable 'model' [-Wunused-variable]
        int model = *p->model;
            ^
BoxCoxPriors.c:57:16: warning: unused variable 'rowZ' [-Wunused-variable]
        rowPrecision, rowZ, rowLambda0;
                      ^
7 warnings generated.
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/x86_64/include   -I/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include -DGSL_MAJOR=1 -DGSL_MINOR=13 -DGSL_STATIC -fPIC  -falign-functions=64 -Wall -g -O2  -c Nu.c -o Nu.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/x86_64/include   -I/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include -DGSL_MAJOR=1 -DGSL_MINOR=13 -DGSL_STATIC -fPIC  -falign-functions=64 -Wall -g -O2  -c flowClust.c -o flowClust.o
flowClust.c:48:2: warning: unused variable 'matrixZUY2' [-Wunused-variable]
        matrixZUY2;
        ^
flowClust.c:46:48: warning: unused variable 'subRowZUY2' [-Wunused-variable]
        rowYTransS, rowZUY, subRowZUY, rowZ, rowZUY2, subRowZUY2;
                                                      ^
flowClust.c:46:39: warning: unused variable 'rowZUY2' [-Wunused-variable]
        rowYTransS, rowZUY, subRowZUY, rowZ, rowZUY2, subRowZUY2;
                                             ^
flowClust.c:1111:6: warning: unused variable 'i' [-Wunused-variable]
        int i=0;
            ^
flowClust.c:10:27: warning: unused variable 'CEntries' [-Wunused-const-variable]
static const R_CMethodDef CEntries[] = { { "flowClust", (DL_FUNC) & flowClust,
                          ^
5 warnings generated.
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/x86_64/include   -I/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include -DGSL_MAJOR=1 -DGSL_MINOR=13 -DGSL_STATIC -fPIC  -falign-functions=64 -Wall -g -O2  -c flowClustGaussian.c -o flowClustGaussian.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/x86_64/include   -I/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include -DGSL_MAJOR=1 -DGSL_MINOR=13 -DGSL_STATIC -fPIC  -falign-functions=64 -Wall -g -O2  -c ranMVNT.c -o ranMVNT.o
clang -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o flowClust.so BoxCox.o BoxCoxPriors.o Nu.o flowClust.o flowClustGaussian.o ranMVNT.o gsl-1.13/blas/.libs/blas.o gsl-1.13/block/.libs/block.o gsl-1.13/block/.libs/file.o gsl-1.13/block/.libs/init.o gsl-1.13/cblas/.libs/caxpy.o gsl-1.13/cblas/.libs/ccopy.o gsl-1.13/cblas/.libs/cdotc_sub.o gsl-1.13/cblas/.libs/cdotu_sub.o gsl-1.13/cblas/.libs/cgbmv.o gsl-1.13/cblas/.libs/cgemm.o gsl-1.13/cblas/.libs/cgemv.o gsl-1.13/cblas/.libs/cgerc.o gsl-1.13/cblas/.libs/cgeru.o gsl-1.13/cblas/.libs/chbmv.o gsl-1.13/cblas/.libs/chemm.o gsl-1.13/cblas/.libs/chemv.o gsl-1.13/cblas/.libs/cher.o gsl-1.13/cblas/.libs/cher2.o gsl-1.13/cblas/.libs/cher2k.o gsl-1.13/cblas/.libs/cherk.o gsl-1.13/cblas/.libs/chpmv.o gsl-1.13/cblas/.libs/chpr.o gsl-1.13/cblas/.libs/chpr2.o gsl-1.13/cblas/.libs/cscal.o gsl-1.13/cblas/.libs/csscal.o gsl-1.13/cblas/.libs/cswap.o gsl-1.13/cblas/.libs/csymm.o gsl-1.13/cblas/.libs/csyr2k.o gsl-1.13/cblas/.libs/csyrk.o gsl-1.13/cblas/.libs/ctbmv.o gsl-1.13/cblas/.libs/ctbsv.o gsl-1.13/cblas/.libs/ctpmv.o gsl-1.13/cblas/.libs/ctpsv.o gsl-1.13/cblas/.libs/ctrmm.o gsl-1.13/cblas/.libs/ctrmv.o gsl-1.13/cblas/.libs/ctrsm.o gsl-1.13/cblas/.libs/ctrsv.o gsl-1.13/cblas/.libs/dasum.o gsl-1.13/cblas/.libs/daxpy.o gsl-1.13/cblas/.libs/dcopy.o gsl-1.13/cblas/.libs/ddot.o gsl-1.13/cblas/.libs/dgbmv.o gsl-1.13/cblas/.libs/dgemm.o gsl-1.13/cblas/.libs/dgemv.o gsl-1.13/cblas/.libs/dger.o gsl-1.13/cblas/.libs/dnrm2.o gsl-1.13/cblas/.libs/drot.o gsl-1.13/cblas/.libs/drotg.o gsl-1.13/cblas/.libs/drotm.o gsl-1.13/cblas/.libs/drotmg.o gsl-1.13/cblas/.libs/dsbmv.o gsl-1.13/cblas/.libs/dscal.o gsl-1.13/cblas/.libs/dsdot.o gsl-1.13/cblas/.libs/dspmv.o gsl-1.13/cblas/.libs/dspr.o gsl-1.13/cblas/.libs/dspr2.o gsl-1.13/cblas/.libs/dswap.o gsl-1.13/cblas/.libs/dsymm.o gsl-1.13/cblas/.libs/dsymv.o gsl-1.13/cblas/.libs/dsyr.o gsl-1.13/cblas/.libs/dsyr2.o gsl-1.13/cblas/.libs/dsyr2k.o gsl-1.13/cblas/.libs/dsyrk.o gsl-1.13/cblas/.libs/dtbmv.o gsl-1.13/cblas/.libs/dtbsv.o gsl-1.13/cblas/.libs/dtpmv.o gsl-1.13/cblas/.libs/dtpsv.o gsl-1.13/cblas/.libs/dtrmm.o gsl-1.13/cblas/.libs/dtrmv.o gsl-1.13/cblas/.libs/dtrsm.o gsl-1.13/cblas/.libs/dtrsv.o gsl-1.13/cblas/.libs/dzasum.o gsl-1.13/cblas/.libs/dznrm2.o gsl-1.13/cblas/.libs/icamax.o gsl-1.13/cblas/.libs/idamax.o gsl-1.13/cblas/.libs/isamax.o gsl-1.13/cblas/.libs/izamax.o gsl-1.13/cblas/.libs/sasum.o gsl-1.13/cblas/.libs/saxpy.o gsl-1.13/cblas/.libs/scasum.o gsl-1.13/cblas/.libs/scnrm2.o gsl-1.13/cblas/.libs/scopy.o gsl-1.13/cblas/.libs/sdot.o gsl-1.13/cblas/.libs/sdsdot.o gsl-1.13/cblas/.libs/sgbmv.o gsl-1.13/cblas/.libs/sgemm.o gsl-1.13/cblas/.libs/sgemv.o gsl-1.13/cblas/.libs/sger.o gsl-1.13/cblas/.libs/snrm2.o gsl-1.13/cblas/.libs/srot.o gsl-1.13/cblas/.libs/srotg.o gsl-1.13/cblas/.libs/srotm.o gsl-1.13/cblas/.libs/srotmg.o gsl-1.13/cblas/.libs/ssbmv.o gsl-1.13/cblas/.libs/sscal.o gsl-1.13/cblas/.libs/sspmv.o gsl-1.13/cblas/.libs/sspr.o gsl-1.13/cblas/.libs/sspr2.o gsl-1.13/cblas/.libs/sswap.o gsl-1.13/cblas/.libs/ssymm.o gsl-1.13/cblas/.libs/ssymv.o gsl-1.13/cblas/.libs/ssyr.o gsl-1.13/cblas/.libs/ssyr2.o gsl-1.13/cblas/.libs/ssyr2k.o gsl-1.13/cblas/.libs/ssyrk.o gsl-1.13/cblas/.libs/stbmv.o gsl-1.13/cblas/.libs/stbsv.o gsl-1.13/cblas/.libs/stpmv.o gsl-1.13/cblas/.libs/stpsv.o gsl-1.13/cblas/.libs/strmm.o gsl-1.13/cblas/.libs/strmv.o gsl-1.13/cblas/.libs/strsm.o gsl-1.13/cblas/.libs/strsv.o gsl-1.13/cblas/.libs/xerbla.o gsl-1.13/cblas/.libs/zaxpy.o gsl-1.13/cblas/.libs/zcopy.o gsl-1.13/cblas/.libs/zdotc_sub.o gsl-1.13/cblas/.libs/zdotu_sub.o gsl-1.13/cblas/.libs/zdscal.o gsl-1.13/cblas/.libs/zgbmv.o gsl-1.13/cblas/.libs/zgemm.o gsl-1.13/cblas/.libs/zgemv.o gsl-1.13/cblas/.libs/zgerc.o gsl-1.13/cblas/.libs/zgeru.o gsl-1.13/cblas/.libs/zhbmv.o gsl-1.13/cblas/.libs/zhemm.o gsl-1.13/cblas/.libs/zhemv.o gsl-1.13/cblas/.libs/zher.o gsl-1.13/cblas/.libs/zher2.o gsl-1.13/cblas/.libs/zher2k.o gsl-1.13/cblas/.libs/zherk.o gsl-1.13/cblas/.libs/zhpmv.o gsl-1.13/cblas/.libs/zhpr.o gsl-1.13/cblas/.libs/zhpr2.o gsl-1.13/cblas/.libs/zscal.o gsl-1.13/cblas/.libs/zswap.o gsl-1.13/cblas/.libs/zsymm.o gsl-1.13/cblas/.libs/zsyr2k.o gsl-1.13/cblas/.libs/zsyrk.o gsl-1.13/cblas/.libs/ztbmv.o gsl-1.13/cblas/.libs/ztbsv.o gsl-1.13/cblas/.libs/ztpmv.o gsl-1.13/cblas/.libs/ztpsv.o gsl-1.13/cblas/.libs/ztrmm.o gsl-1.13/cblas/.libs/ztrmv.o gsl-1.13/cblas/.libs/ztrsm.o gsl-1.13/cblas/.libs/ztrsv.o gsl-1.13/cdf/.libs/beta.o gsl-1.13/cdf/.libs/betainv.o gsl-1.13/cdf/.libs/binomial.o gsl-1.13/cdf/.libs/cauchy.o gsl-1.13/cdf/.libs/cauchyinv.o gsl-1.13/cdf/.libs/chisq.o gsl-1.13/cdf/.libs/chisqinv.o gsl-1.13/cdf/.libs/exponential.o gsl-1.13/cdf/.libs/exponentialinv.o gsl-1.13/cdf/.libs/exppow.o gsl-1.13/cdf/.libs/fdist.o gsl-1.13/cdf/.libs/fdistinv.o gsl-1.13/cdf/.libs/flat.o gsl-1.13/cdf/.libs/flatinv.o gsl-1.13/cdf/.libs/gamma.o gsl-1.13/cdf/.libs/gammainv.o gsl-1.13/cdf/.libs/gauss.o gsl-1.13/cdf/.libs/gaussinv.o gsl-1.13/cdf/.libs/geometric.o gsl-1.13/cdf/.libs/gumbel1.o gsl-1.13/cdf/.libs/gumbel1inv.o gsl-1.13/cdf/.libs/gumbel2.o gsl-1.13/cdf/.libs/gumbel2inv.o gsl-1.13/cdf/.libs/hypergeometric.o gsl-1.13/cdf/.libs/laplace.o gsl-1.13/cdf/.libs/laplaceinv.o gsl-1.13/cdf/.libs/logistic.o gsl-1.13/cdf/.libs/logisticinv.o gsl-1.13/cdf/.libs/lognormal.o gsl-1.13/cdf/.libs/lognormalinv.o gsl-1.13/cdf/.libs/nbinomial.o gsl-1.13/cdf/.libs/pareto.o gsl-1.13/cdf/.libs/paretoinv.o gsl-1.13/cdf/.libs/pascal.o gsl-1.13/cdf/.libs/poisson.o gsl-1.13/cdf/.libs/rayleigh.o gsl-1.13/cdf/.libs/rayleighinv.o gsl-1.13/cdf/.libs/tdist.o gsl-1.13/cdf/.libs/tdistinv.o gsl-1.13/cdf/.libs/weibull.o gsl-1.13/cdf/.libs/weibullinv.o gsl-1.13/complex/.libs/inline.o gsl-1.13/complex/.libs/math.o gsl-1.13/eigen/.libs/francis.o gsl-1.13/eigen/.libs/gen.o gsl-1.13/eigen/.libs/genherm.o gsl-1.13/eigen/.libs/genhermv.o gsl-1.13/eigen/.libs/gensymm.o gsl-1.13/eigen/.libs/gensymmv.o gsl-1.13/eigen/.libs/genv.o gsl-1.13/eigen/.libs/herm.o gsl-1.13/eigen/.libs/hermv.o gsl-1.13/eigen/.libs/jacobi.o gsl-1.13/eigen/.libs/nonsymm.o gsl-1.13/eigen/.libs/nonsymmv.o gsl-1.13/eigen/.libs/schur.o gsl-1.13/eigen/.libs/sort.o gsl-1.13/eigen/.libs/symm.o gsl-1.13/eigen/.libs/symmv.o gsl-1.13/err/.libs/error.o gsl-1.13/err/.libs/message.o gsl-1.13/err/.libs/stream.o gsl-1.13/err/.libs/strerror.o gsl-1.13/linalg/.libs/balance.o gsl-1.13/linalg/.libs/balancemat.o gsl-1.13/linalg/.libs/bidiag.o gsl-1.13/linalg/.libs/cholesky.o gsl-1.13/linalg/.libs/choleskyc.o gsl-1.13/linalg/.libs/exponential.o gsl-1.13/linalg/.libs/hermtd.o gsl-1.13/linalg/.libs/hessenberg.o gsl-1.13/linalg/.libs/hesstri.o gsl-1.13/linalg/.libs/hh.o gsl-1.13/linalg/.libs/householder.o gsl-1.13/linalg/.libs/householdercomplex.o gsl-1.13/linalg/.libs/lq.o gsl-1.13/linalg/.libs/lu.o gsl-1.13/linalg/.libs/luc.o gsl-1.13/linalg/.libs/multiply.o gsl-1.13/linalg/.libs/ptlq.o gsl-1.13/linalg/.libs/qr.o gsl-1.13/linalg/.libs/qrpt.o gsl-1.13/linalg/.libs/svd.o gsl-1.13/linalg/.libs/symmtd.o gsl-1.13/linalg/.libs/tridiag.o gsl-1.13/matrix/.libs/copy.o gsl-1.13/matrix/.libs/file.o gsl-1.13/matrix/.libs/getset.o gsl-1.13/matrix/.libs/init.o gsl-1.13/matrix/.libs/matrix.o gsl-1.13/matrix/.libs/minmax.o gsl-1.13/matrix/.libs/oper.o gsl-1.13/matrix/.libs/prop.o gsl-1.13/matrix/.libs/rowcol.o gsl-1.13/matrix/.libs/submatrix.o gsl-1.13/matrix/.libs/swap.o gsl-1.13/matrix/.libs/view.o gsl-1.13/min/.libs/bracketing.o gsl-1.13/min/.libs/brent.o gsl-1.13/min/.libs/convergence.o gsl-1.13/min/.libs/fsolver.o gsl-1.13/min/.libs/golden.o gsl-1.13/min/.libs/quad_golden.o gsl-1.13/permutation/.libs/canonical.o gsl-1.13/permutation/.libs/file.o gsl-1.13/permutation/.libs/init.o gsl-1.13/permutation/.libs/inline.o gsl-1.13/permutation/.libs/permutation.o gsl-1.13/permutation/.libs/permute.o gsl-1.13/randist/.libs/bernoulli.o gsl-1.13/randist/.libs/beta.o gsl-1.13/randist/.libs/bigauss.o gsl-1.13/randist/.libs/binomial.o gsl-1.13/randist/.libs/binomial_tpe.o gsl-1.13/randist/.libs/cauchy.o gsl-1.13/randist/.libs/chisq.o gsl-1.13/randist/.libs/dirichlet.o gsl-1.13/randist/.libs/discrete.o gsl-1.13/randist/.libs/erlang.o gsl-1.13/randist/.libs/exponential.o gsl-1.13/randist/.libs/exppow.o gsl-1.13/randist/.libs/fdist.o gsl-1.13/randist/.libs/flat.o gsl-1.13/randist/.libs/gamma.o gsl-1.13/randist/.libs/gauss.o gsl-1.13/randist/.libs/gausstail.o gsl-1.13/randist/.libs/gausszig.o gsl-1.13/randist/.libs/geometric.o gsl-1.13/randist/.libs/gumbel.o gsl-1.13/randist/.libs/hyperg.o gsl-1.13/randist/.libs/landau.o gsl-1.13/randist/.libs/laplace.o gsl-1.13/randist/.libs/levy.o gsl-1.13/randist/.libs/logarithmic.o gsl-1.13/randist/.libs/logistic.o gsl-1.13/randist/.libs/lognormal.o gsl-1.13/randist/.libs/multinomial.o gsl-1.13/randist/.libs/nbinomial.o gsl-1.13/randist/.libs/pareto.o gsl-1.13/randist/.libs/pascal.o gsl-1.13/randist/.libs/poisson.o gsl-1.13/randist/.libs/rayleigh.o gsl-1.13/randist/.libs/shuffle.o gsl-1.13/randist/.libs/sphere.o gsl-1.13/randist/.libs/tdist.o gsl-1.13/randist/.libs/weibull.o gsl-1.13/rng/.libs/borosh13.o gsl-1.13/rng/.libs/cmrg.o gsl-1.13/rng/.libs/coveyou.o gsl-1.13/rng/.libs/default.o gsl-1.13/rng/.libs/file.o gsl-1.13/rng/.libs/fishman18.o gsl-1.13/rng/.libs/fishman20.o gsl-1.13/rng/.libs/fishman2x.o gsl-1.13/rng/.libs/gfsr4.o gsl-1.13/rng/.libs/inline.o gsl-1.13/rng/.libs/knuthran.o gsl-1.13/rng/.libs/knuthran2.o gsl-1.13/rng/.libs/knuthran2002.o gsl-1.13/rng/.libs/lecuyer21.o gsl-1.13/rng/.libs/minstd.o gsl-1.13/rng/.libs/mrg.o gsl-1.13/rng/.libs/mt.o gsl-1.13/rng/.libs/r250.o gsl-1.13/rng/.libs/ran0.o gsl-1.13/rng/.libs/ran1.o gsl-1.13/rng/.libs/ran2.o gsl-1.13/rng/.libs/ran3.o gsl-1.13/rng/.libs/rand.o gsl-1.13/rng/.libs/rand48.o gsl-1.13/rng/.libs/random.o gsl-1.13/rng/.libs/randu.o gsl-1.13/rng/.libs/ranf.o gsl-1.13/rng/.libs/ranlux.o gsl-1.13/rng/.libs/ranlxd.o gsl-1.13/rng/.libs/ranlxs.o gsl-1.13/rng/.libs/ranmar.o gsl-1.13/rng/.libs/rng.o gsl-1.13/rng/.libs/slatec.o gsl-1.13/rng/.libs/taus.o gsl-1.13/rng/.libs/taus113.o gsl-1.13/rng/.libs/transputer.o gsl-1.13/rng/.libs/tt.o gsl-1.13/rng/.libs/types.o gsl-1.13/rng/.libs/uni.o gsl-1.13/rng/.libs/uni32.o gsl-1.13/rng/.libs/vax.o gsl-1.13/rng/.libs/waterman14.o gsl-1.13/rng/.libs/zuf.o gsl-1.13/roots/.libs/bisection.o gsl-1.13/roots/.libs/brent.o gsl-1.13/roots/.libs/convergence.o gsl-1.13/roots/.libs/falsepos.o gsl-1.13/roots/.libs/fdfsolver.o gsl-1.13/roots/.libs/fsolver.o gsl-1.13/roots/.libs/newton.o gsl-1.13/roots/.libs/secant.o gsl-1.13/roots/.libs/steffenson.o gsl-1.13/specfunc/.libs/airy.o gsl-1.13/specfunc/.libs/airy_der.o gsl-1.13/specfunc/.libs/airy_zero.o gsl-1.13/specfunc/.libs/atanint.o gsl-1.13/specfunc/.libs/bessel.o gsl-1.13/specfunc/.libs/bessel_I0.o gsl-1.13/specfunc/.libs/bessel_I1.o gsl-1.13/specfunc/.libs/bessel_In.o gsl-1.13/specfunc/.libs/bessel_Inu.o gsl-1.13/specfunc/.libs/bessel_J0.o gsl-1.13/specfunc/.libs/bessel_J1.o gsl-1.13/specfunc/.libs/bessel_Jn.o gsl-1.13/specfunc/.libs/bessel_Jnu.o gsl-1.13/specfunc/.libs/bessel_K0.o gsl-1.13/specfunc/.libs/bessel_K1.o gsl-1.13/specfunc/.libs/bessel_Kn.o gsl-1.13/specfunc/.libs/bessel_Knu.o gsl-1.13/specfunc/.libs/bessel_Y0.o gsl-1.13/specfunc/.libs/bessel_Y1.o gsl-1.13/specfunc/.libs/bessel_Yn.o gsl-1.13/specfunc/.libs/bessel_Ynu.o gsl-1.13/specfunc/.libs/bessel_amp_phase.o gsl-1.13/specfunc/.libs/bessel_i.o gsl-1.13/specfunc/.libs/bessel_j.o gsl-1.13/specfunc/.libs/bessel_k.o gsl-1.13/specfunc/.libs/bessel_olver.o gsl-1.13/specfunc/.libs/bessel_sequence.o gsl-1.13/specfunc/.libs/bessel_temme.o gsl-1.13/specfunc/.libs/bessel_y.o gsl-1.13/specfunc/.libs/bessel_zero.o gsl-1.13/specfunc/.libs/beta.o gsl-1.13/specfunc/.libs/beta_inc.o gsl-1.13/specfunc/.libs/clausen.o gsl-1.13/specfunc/.libs/coulomb.o gsl-1.13/specfunc/.libs/coulomb_bound.o gsl-1.13/specfunc/.libs/coupling.o gsl-1.13/specfunc/.libs/dawson.o gsl-1.13/specfunc/.libs/debye.o gsl-1.13/specfunc/.libs/dilog.o gsl-1.13/specfunc/.libs/elementary.o gsl-1.13/specfunc/.libs/ellint.o gsl-1.13/specfunc/.libs/elljac.o gsl-1.13/specfunc/.libs/erfc.o gsl-1.13/specfunc/.libs/exp.o gsl-1.13/specfunc/.libs/expint.o gsl-1.13/specfunc/.libs/expint3.o gsl-1.13/specfunc/.libs/fermi_dirac.o gsl-1.13/specfunc/.libs/gamma.o gsl-1.13/specfunc/.libs/gamma_inc.o gsl-1.13/specfunc/.libs/gegenbauer.o gsl-1.13/specfunc/.libs/hyperg.o gsl-1.13/specfunc/.libs/hyperg_0F1.o gsl-1.13/specfunc/.libs/hyperg_1F1.o gsl-1.13/specfunc/.libs/hyperg_2F0.o gsl-1.13/specfunc/.libs/hyperg_2F1.o gsl-1.13/specfunc/.libs/hyperg_U.o gsl-1.13/specfunc/.libs/laguerre.o gsl-1.13/specfunc/.libs/lambert.o gsl-1.13/specfunc/.libs/legendre_H3d.o gsl-1.13/specfunc/.libs/legendre_Qn.o gsl-1.13/specfunc/.libs/legendre_con.o gsl-1.13/specfunc/.libs/legendre_poly.o gsl-1.13/specfunc/.libs/log.o gsl-1.13/specfunc/.libs/mathieu_angfunc.o gsl-1.13/specfunc/.libs/mathieu_charv.o gsl-1.13/specfunc/.libs/mathieu_coeff.o gsl-1.13/specfunc/.libs/mathieu_radfunc.o gsl-1.13/specfunc/.libs/mathieu_workspace.o gsl-1.13/specfunc/.libs/poch.o gsl-1.13/specfunc/.libs/pow_int.o gsl-1.13/specfunc/.libs/psi.o gsl-1.13/specfunc/.libs/result.o gsl-1.13/specfunc/.libs/shint.o gsl-1.13/specfunc/.libs/sinint.o gsl-1.13/specfunc/.libs/synchrotron.o gsl-1.13/specfunc/.libs/transport.o gsl-1.13/specfunc/.libs/trig.o gsl-1.13/specfunc/.libs/zeta.o gsl-1.13/statistics/.libs/absdev.o gsl-1.13/statistics/.libs/covariance.o gsl-1.13/statistics/.libs/kurtosis.o gsl-1.13/statistics/.libs/lag1.o gsl-1.13/statistics/.libs/mean.o gsl-1.13/statistics/.libs/median.o gsl-1.13/statistics/.libs/minmax.o gsl-1.13/statistics/.libs/p_variance.o gsl-1.13/statistics/.libs/quantiles.o gsl-1.13/statistics/.libs/skew.o gsl-1.13/statistics/.libs/ttest.o gsl-1.13/statistics/.libs/variance.o gsl-1.13/statistics/.libs/wabsdev.o gsl-1.13/statistics/.libs/wkurtosis.o gsl-1.13/statistics/.libs/wmean.o gsl-1.13/statistics/.libs/wskew.o gsl-1.13/statistics/.libs/wvariance.o gsl-1.13/sys/.libs/coerce.o gsl-1.13/sys/.libs/expm1.o gsl-1.13/sys/.libs/fcmp.o gsl-1.13/sys/.libs/fdiv.o gsl-1.13/sys/.libs/hypot.o gsl-1.13/sys/.libs/infnan.o gsl-1.13/sys/.libs/invhyp.o gsl-1.13/sys/.libs/ldfrexp.o gsl-1.13/sys/.libs/log1p.o gsl-1.13/sys/.libs/minmax.o gsl-1.13/sys/.libs/pow_int.o gsl-1.13/sys/.libs/prec.o gsl-1.13/vector/.libs/copy.o gsl-1.13/vector/.libs/file.o gsl-1.13/vector/.libs/init.o gsl-1.13/vector/.libs/minmax.o gsl-1.13/vector/.libs/oper.o gsl-1.13/vector/.libs/prop.o gsl-1.13/vector/.libs/reim.o gsl-1.13/vector/.libs/subvector.o gsl-1.13/vector/.libs/swap.o gsl-1.13/vector/.libs/vector.o gsl-1.13/vector/.libs/view.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/00LOCK-flowClust/00new/flowClust/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for ‘Map’ in package ‘flowClust’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (flowClust)

Tests output

flowClust.Rcheck/tests/testthat.Rout


R version 4.4.2 (2024-10-31) -- "Pile of Leaves"
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> library(testthat)
> library(flowClust)

Attaching package: 'flowClust'

The following object is masked from 'package:graphics':

    box

The following object is masked from 'package:base':

    Map

> win32_flag = .Platform$OS.type == "windows" && .Machine$sizeof.pointer != 8
> if(!win32_flag)
+ test_check("flowClust")
[ FAIL 0 | WARN 10 | SKIP 2 | PASS 40 ]

══ Skipped tests (2) ═══════════════════════════════════════════════════════════
• empty test (1): 'test_1d.R:116:1'
• to temporarily bypass bioc check error for windows and aarch64 linux (1):
  'test_2d.R:27:3'

[ FAIL 0 | WARN 10 | SKIP 2 | PASS 40 ]
> 
> #devtools::test("~/rglab/workspace/flowClust")
> 
> #taking quite some time , thus only for internal testing
> #test_file("~/rglab/workspace/flowClust/tests/testthat/flowClust-gated-data.R")
> #tools::checkDocFiles(dir = ".")
> 
> proc.time()
   user  system elapsed 
537.444   9.576 366.533

Example timings

flowClust.Rcheck/flowClust-Ex.timings

name	user	system	elapsed
box	0.067	0.017	0.085
flowClust	2.251	0.059	2.336
tmixFilter	1.704	0.050	1.774