Back to Multiple platform build/check report for BioC 3.20:   simplified   long
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This page was generated on 2024-12-23 12:06 -0500 (Mon, 23 Dec 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.1 LTS)x86_644.4.2 (2024-10-31) -- "Pile of Leaves" 4744
palomino8Windows Server 2022 Datacenterx644.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" 4487
merida1macOS 12.7.5 Montereyx86_644.4.2 (2024-10-31) -- "Pile of Leaves" 4515
kjohnson1macOS 13.6.6 Venturaarm644.4.2 (2024-10-31) -- "Pile of Leaves" 4467
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 703/2289HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
fcScan 1.20.0  (landing page)
Pierre Khoueiry Abdullah El-Kurdi
Snapshot Date: 2024-12-19 13:00 -0500 (Thu, 19 Dec 2024)
git_url: https://git.bioconductor.org/packages/fcScan
git_branch: RELEASE_3_20
git_last_commit: be6c200
git_last_commit_date: 2024-10-29 10:39:14 -0500 (Tue, 29 Oct 2024)
nebbiolo2Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino8Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 12.7.5 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson1macOS 13.6.6 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published


CHECK results for fcScan on merida1

To the developers/maintainers of the fcScan package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/fcScan.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: fcScan
Version: 1.20.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:fcScan.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings fcScan_1.20.0.tar.gz
StartedAt: 2024-12-20 03:23:25 -0500 (Fri, 20 Dec 2024)
EndedAt: 2024-12-20 03:32:56 -0500 (Fri, 20 Dec 2024)
EllapsedTime: 571.0 seconds
RetCode: 0
Status:   OK  
CheckDir: fcScan.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:fcScan.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings fcScan_1.20.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.20-bioc/meat/fcScan.Rcheck’
* using R version 4.4.2 (2024-10-31)
* using platform: x86_64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.7.6
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘fcScan/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘fcScan’ version ‘1.20.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘fcScan’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘runTests.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

fcScan.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL fcScan
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library’
* installing *source* package ‘fcScan’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (fcScan)

Tests output

fcScan.Rcheck/tests/runTests.Rout


R version 4.4.2 (2024-10-31) -- "Pile of Leaves"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin20

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> BiocGenerics:::testPackage("fcScan")
Loading required package: GenomicRanges
Loading required package: stats4
Loading required package: BiocGenerics

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rownames, sapply, saveRDS, setdiff, table,
    tapply, union, unique, unsplit, which.max, which.min

Loading required package: S4Vectors

Attaching package: 'S4Vectors'

The following object is masked from 'package:utils':

    findMatches

The following objects are masked from 'package:base':

    I, expand.grid, unname

Loading required package: IRanges
Loading required package: GenomeInfoDb
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.4833729 secs
Sites in condition do not match sites in data
3  entries loaded 
Running getCluster using 1 threads
Time difference of 0.176805 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.1942129 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.2108581 secs
17  entries loaded 
Running getCluster using 1 threads
No cluster found
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.294678 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.227803 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.222955 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.188014 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.1933291 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.178941 secs
6  entries loaded 
Running getCluster using 1 threads
Time difference of 0.194793 secs
6  entries loaded 
Running getCluster using 1 threads
Time difference of 0.1969299 secs
6  entries loaded 
Running getCluster using 1 threads
Time difference of 0.212039 secs
6  entries loaded 
Running getCluster using 1 threads
Time difference of 0.179163 secs
10  entries loaded 
Running getCluster using 1 threads
Time difference of 0.212261 secs
10  entries loaded 
Running getCluster using 1 threads
No cluster found
10  entries loaded 
Running getCluster using 1 threads
Time difference of 0.180469 secs
16  entries loaded 
Running getCluster using 1 threads
Time difference of 0.1465161 secs
6  entries loaded 
Running getCluster using 1 threads
Time difference of 0.1578782 secs
6  entries loaded 
Running getCluster using 1 threads
Time difference of 0.1659601 secs
6  entries loaded 
Running getCluster using 1 threads
Time difference of 0.1721601 secs
6  entries loaded 
Running getCluster using 1 threads
Time difference of 0.1731448 secs
6  entries loaded 
Running getCluster using 1 threads
Time difference of 0.1772881 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.169152 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.2051439 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.1791658 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.1841209 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.1796539 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.1497109 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.153244 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.233412 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.208822 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.2326481 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.3218331 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.1881521 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.2244341 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.219466 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.1666639 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.1773679 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.1667838 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.2088511 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.170743 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.2377441 secs


RUNIT TEST PROTOCOL -- Fri Dec 20 03:32:43 2024 
*********************************************** 
Number of test functions: 1 
Number of errors: 0 
Number of failures: 0 

 
1 Test Suite : 
fcScan RUnit Tests - 1 test function, 0 errors, 0 failures
Number of test functions: 1 
Number of errors: 0 
Number of failures: 0 
> 
> proc.time()
   user  system elapsed 
 33.400   1.974  36.736 

Example timings

fcScan.Rcheck/fcScan-Ex.timings

nameusersystemelapsed
getCluster0.6180.0340.719