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### Running command:
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### F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL fastseg
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* installing to library 'F:/biocbuild/bbs-3.20-bioc/R/library'
* installing *source* package 'fastseg' ...
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 13.2.0'
using C++ compiler: 'G__~1.EXE (GCC) 13.2.0'
gcc -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c R_init_fastseg.c -o R_init_fastseg.o
g++ -std=gnu++17 -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c segment.cpp -o segment.o
segment.cpp: In function 'SEXPREC* segment(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
segment.cpp:60:27: warning: variable 'globalSd' set but not used [-Wunused-but-set-variable]
60 | double globalMean,globalSd,diff,M2,globalVariance;
| ^~~~~~~~
segment.cpp:61:16: warning: variable 'oldStatistic' set but not used [-Wunused-but-set-variable]
61 | double oldStatistic, meanLeft,meanRight,varLeft,varRight;
| ^~~~~~~~~~~~
segment.cpp:62:38: warning: variable 'maxStatistic' set but not used [-Wunused-but-set-variable]
62 | double newStatistic,meanDiff,maxStatistic,DOF,a,b,eps1;
| ^~~~~~~~~~~~
segment.cpp:63:47: warning: variable 'maxIdx' set but not used [-Wunused-but-set-variable]
63 | double newPValue, maxPValue,oldPValue,maxIdx;
| ^~~~~~
In file included from segment.cpp:10:
F:/biocbuild/bbs-3.20-bioc/R/include/Rmath.h:210:25: warning: unused variable 'Rf_beta' [-Wunused-variable]
210 | #define beta Rf_beta
| ^~~~~~~
segment.cpp:65:16: note: in expansion of macro 'beta'
65 | double beta,nn;
| ^~~~
g++ -std=gnu++17 -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c segmentCyberT.cpp -o segmentCyberT.o
segmentCyberT.cpp: In function 'SEXPREC* segmentCyberT(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
segmentCyberT.cpp:59:27: warning: variable 'globalSd' set but not used [-Wunused-but-set-variable]
59 | double globalMean,globalSd,diff,M2,globalVariance;
| ^~~~~~~~
segmentCyberT.cpp:60:16: warning: variable 'oldStatistic' set but not used [-Wunused-but-set-variable]
60 | double oldStatistic,meanLeft,meanRight,varLeft,varRight;
| ^~~~~~~~~~~~
segmentCyberT.cpp:61:38: warning: variable 'maxStatistic' set but not used [-Wunused-but-set-variable]
61 | double newStatistic,meanDiff,maxStatistic,DOF,a,b,eps1;
| ^~~~~~~~~~~~
In file included from segmentCyberT.cpp:10:
F:/biocbuild/bbs-3.20-bioc/R/include/Rmath.h:210:25: warning: unused variable 'Rf_beta' [-Wunused-variable]
210 | #define beta Rf_beta
| ^~~~~~~
segmentCyberT.cpp:63:57: note: in expansion of macro 'beta'
63 | double newStatisticBptLeft,newStatisticBptRight,beta,nn;
| ^~~~
g++ -std=gnu++17 -shared -s -static-libgcc -o fastseg.dll tmp.def R_init_fastseg.o segment.o segmentCyberT.o -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.20-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.20-bioc/R/library/00LOCK-fastseg/00new/fastseg/libs/x64
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (fastseg)
