Back to Multiple platform build/check report for BioC 3.21:   simplified   long
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This page was generated on 2025-10-13 11:38 -0400 (Mon, 13 Oct 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.3 LTS)x86_644.5.1 (2025-06-13) -- "Great Square Root" 4833
merida1macOS 12.7.5 Montereyx86_644.5.1 RC (2025-06-05 r88288) -- "Great Square Root" 4614
kjohnson1macOS 13.6.6 Venturaarm644.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" 4555
kunpeng2Linux (openEuler 24.03 LTS)aarch64R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" 4586
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 674/2341HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
epiNEM 1.32.0  (landing page)
Martin Pirkl
Snapshot Date: 2025-10-09 13:40 -0400 (Thu, 09 Oct 2025)
git_url: https://git.bioconductor.org/packages/epiNEM
git_branch: RELEASE_3_21
git_last_commit: b2fc9f7
git_last_commit_date: 2025-04-15 11:09:14 -0400 (Tue, 15 Apr 2025)
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    ERROR  skipped
merida1macOS 12.7.5 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson1macOS 13.6.6 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
kunpeng2Linux (openEuler 24.03 LTS) / aarch64  OK    OK    OK  

BUILD results for epiNEM on nebbiolo1

To the developers/maintainers of the epiNEM package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/epiNEM.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: epiNEM
Version: 1.32.0
Command: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data epiNEM
StartedAt: 2025-10-12 17:24:30 -0400 (Sun, 12 Oct 2025)
EndedAt: 2025-10-12 17:25:07 -0400 (Sun, 12 Oct 2025)
EllapsedTime: 37.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data epiNEM
###
##############################################################################
##############################################################################


* checking for file ‘epiNEM/DESCRIPTION’ ... OK
* preparing ‘epiNEM’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘epiNEM.Rmd’ using rmarkdown
trying URL 'https://stringdb-downloads.org/download/protein.links.v11.0/4932.protein.links.v11.0.txt.gz'

Quitting from epiNEM.Rmd:265-349 [unnamed-chunk-14]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `download.file()`:
! cannot open URL 'https://stringdb-downloads.org/download/protein.links.v11.0/4932.protein.links.v11.0.txt.gz'
---
Backtrace:
    ▆
 1. └─string_db$get_interactions(...)
 2.   └─STRINGdb (local) load()
 3.     └─STRINGdb::downloadAbsentFile(url, oD = input_directory)
 4.       └─utils::download.file(urlStr, temp)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'epiNEM.Rmd' failed with diagnostics:
cannot open URL 'https://stringdb-downloads.org/download/protein.links.v11.0/4932.protein.links.v11.0.txt.gz'
--- failed re-building ‘epiNEM.Rmd’

SUMMARY: processing the following file failed:
  ‘epiNEM.Rmd’

Error: Vignette re-building failed.
Execution halted