Multiple platform build/check report for BioC 3.21 - BUILD results for derfinderPlot on kunpeng2

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.3 LTS)	x86_64	4.5.1 (2025-06-13) -- "Great Square Root"	4827
merida1	macOS 12.7.5 Monterey	x86_64	4.5.1 RC (2025-06-05 r88288) -- "Great Square Root"	4608
kjohnson1	macOS 13.6.6 Ventura	arm64	4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root"	4549
kunpeng2	Linux (openEuler 24.03 LTS)	aarch64	R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences"	4581
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for derfinderPlot on kunpeng2

To the developers/maintainers of the derfinderPlot package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/derfinderPlot.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results

Summary

Package: derfinderPlot

Version: 1.42.0

Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data derfinderPlot

StartedAt: 2025-09-19 00:28:23 -0000 (Fri, 19 Sep 2025)

EndedAt: 2025-09-19 00:31:56 -0000 (Fri, 19 Sep 2025)

EllapsedTime: 213.1 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data derfinderPlot
###
##############################################################################
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* checking for file ‘derfinderPlot/DESCRIPTION’ ... OK
* preparing ‘derfinderPlot’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘derfinderPlot.Rmd’ using rmarkdown

Quitting from derfinderPlot.Rmd:292-299 [plotCluster]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `margin_auto()`:
! could not find function "margin_auto"
---
Backtrace:
     ▆
  1. └─derfinderPlot::plotCluster(...)
  2.   └─ggbio::plotIdeogram(...)
  3.     └─ggbio::Ideogram(...)
  4.       └─ggbio:::applyTheme(p, xlabel, subchr, aspect.ratio)
  5.         └─ggbio::theme_alignment(grid = FALSE, ylabel = TRUE, border = FALSE)
  6.           ├─ggplot2::theme(...)
  7.           │ └─ggplot2:::find_args(..., complete = NULL, validate = NULL)
  8.           │   └─base::mget(args, envir = env)
  9.           └─ggplot2::element_text(margin = margin_auto(0.5, unit = "lines"))
 10.             └─base::structure(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'derfinderPlot.Rmd' failed with diagnostics:
could not find function "margin_auto"
--- failed re-building ‘derfinderPlot.Rmd’

SUMMARY: processing the following file failed:
  ‘derfinderPlot.Rmd’

Error: Vignette re-building failed.
Execution halted