Multiple platform build/check report for BioC 3.20 - CHECK results for decontX on nebbiolo2

Hostname	OS	Arch (*)	R version	Installed pkgs
teran2	Linux (Ubuntu 24.04.1 LTS)	x86_64	4.4.1 (2024-06-14) -- "Race for Your Life"	4505
nebbiolo2	Linux (Ubuntu 24.04.1 LTS)	x86_64	4.4.1 (2024-06-14) -- "Race for Your Life"	4765
palomino8	Windows Server 2022 Datacenter	x64	4.4.1 (2024-06-14 ucrt) -- "Race for Your Life"	4506
lconway	macOS 12.7.1 Monterey	x86_64	4.4.1 (2024-06-14) -- "Race for Your Life"	4539
kunpeng2	Linux (openEuler 22.03 LTS-SP1)	aarch64	4.4.1 (2024-06-14) -- "Race for Your Life"	4493
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

CHECK results for decontX on nebbiolo2

To the developers/maintainers of the decontX package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/decontX.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: decontX

Version: 1.4.0

Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:decontX.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings decontX_1.4.0.tar.gz

StartedAt: 2024-11-18 22:30:52 -0500 (Mon, 18 Nov 2024)

EndedAt: 2024-11-18 22:46:00 -0500 (Mon, 18 Nov 2024)

EllapsedTime: 907.7 seconds

RetCode: 0

Status: OK

CheckDir: decontX.Rcheck

Warnings: 0

Command output

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:decontX.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings decontX_1.4.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.20-bioc/meat/decontX.Rcheck’
* using R version 4.4.1 (2024-06-14)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
    GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
* running under: Ubuntu 24.04.1 LTS
* using session charset: UTF-8
* checking for file ‘decontX/DESCRIPTION’ ... OK
* this is package ‘decontX’ version ‘1.4.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib:
  cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES'
 OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘decontX’ can be installed ... OK
* used C compiler: ‘gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0’
* used C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’
* checking C++ specification ... OK
  Not all R platforms support C++17
* checking installed package size ... NOTE
  installed size is 62.4Mb
  sub-directories of 1Mb or more:
    libs  62.1Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
License stub is invalid DCF.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in shell scripts ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... NOTE
GNU make is a SystemRequirements.
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                             user system elapsed
decontPro                   9.579  0.205   9.786
decontX                     8.803  0.208   9.013
plotDecontXMarkerPercentage 7.883  0.139   8.023
plotDecontXMarkerExpression 7.740  0.081   7.821
plotDecontXContamination    7.591  0.190   7.781
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 4 NOTEs
See
  ‘/home/biocbuild/bbs-3.20-bioc/meat/decontX.Rcheck/00check.log’
for details.

Installation output

decontX.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD INSTALL decontX
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.20-bioc/R/site-library’
* installing *source* package ‘decontX’ ...
** using staged installation
** libs
using C compiler: ‘gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0’
using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’
using C++17


g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I"../inst/include" -I"/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include' -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include' -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppParallel/include' -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include' -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include' -I/usr/local/include    -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS   -fpic  -g -O2  -Wall  -c DecontX.cpp -o DecontX.o
In file included from /home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/Core:205,
                 from /home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/RcppEigenForward.h:28,
                 from /home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/RcppEigen.h:25,
                 from DecontX.cpp:1:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:46:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes]
   46 | typedef eigen_packet_wrapper<__m128i, 0> Packet4i;
      |                                        ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:47:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes]
   47 | typedef eigen_packet_wrapper<__m128i, 1> Packet16b;
      |                                        ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:49:39: warning: ignoring attributes on template argument ‘__m128’ [-Wignored-attributes]
   49 | template<> struct is_arithmetic<__m128>  { enum { value = true }; };
      |                                       ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:50:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes]
   50 | template<> struct is_arithmetic<__m128i> { enum { value = true }; };
      |                                        ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:51:40: warning: ignoring attributes on template argument ‘__m128d’ [-Wignored-attributes]
   51 | template<> struct is_arithmetic<__m128d> { enum { value = true }; };
      |                                        ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:222:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes]
  222 | template<> struct unpacket_traits<Packet4f> {
      |                                           ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:228:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes]
  228 | template<> struct unpacket_traits<Packet2d> {
      |                                           ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1124:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes]
 1124 | ptranspose(PacketBlock<Packet4f,4>& kernel) {
      |                                  ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1129:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes]
 1129 | ptranspose(PacketBlock<Packet2d,2>& kernel) {
      |                                  ^
In file included from /home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/Core:174:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes]
   16 |   struct conj_helper<PACKET_REAL, PACKET_CPLX, false, false> {          \
      |                                                            ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’
  173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f)
      | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes]
   29 |   struct conj_helper<PACKET_CPLX, PACKET_REAL, false, false> {          \
      |                                                            ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’
  173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f)
      | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes]
   16 |   struct conj_helper<PACKET_REAL, PACKET_CPLX, false, false> {          \
      |                                                            ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’
  298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d)
      | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes]
   29 |   struct conj_helper<PACKET_CPLX, PACKET_REAL, false, false> {          \
      |                                                            ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’
  298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d)
      | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/Core:165:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet<float, 4>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57:   required from ‘struct Eigen::internal::traits<Eigen::Matrix<float, 4, 1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49:   required from ‘struct Eigen::internal::traits<Eigen::Quaternion<float> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:24:46:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<float>::type’ {aka ‘__m128’} [-Wignored-attributes]
  190 |          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
      |                                       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<float>::type’ {aka ‘__m128’} [-Wignored-attributes]
  190 |          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
      |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<float>::type’ {aka ‘__m128’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(4) float>::half’ {aka ‘__m128’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<float>::type’ {aka ‘__m128’} [-Wignored-attributes]
  208 |   typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
      |                                                                                        ^~~~
In file included from /home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/Core:271:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 3>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Matrix<float, 4, 1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Matrix<float, 4, 1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<float, 4, 1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from ‘class Eigen::Matrix<float, 4, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50:   required from ‘class Eigen::QuaternionBase<Eigen::Quaternion<float> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7:   required from ‘class Eigen::Quaternion<float>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:27:3:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<float>::type’ {aka ‘__m128’} [-Wignored-attributes]
   56 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet<double, 4>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57:   required from ‘struct Eigen::internal::traits<Eigen::Matrix<double, 4, 1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49:   required from ‘struct Eigen::internal::traits<Eigen::Quaternion<double> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:98:47:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
  190 |          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
      |                                       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
  190 |          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
      |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
  208 |   typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
      |                                                                                        ^~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 3>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Matrix<double, 4, 1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Matrix<double, 4, 1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<double, 4, 1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from ‘class Eigen::Matrix<double, 4, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50:   required from ‘class Eigen::QuaternionBase<Eigen::Quaternion<double> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7:   required from ‘class Eigen::Quaternion<double>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:102:3:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   56 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
In file included from /home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/SparseCore:37,
                 from /home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/Sparse:26,
                 from /home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/RcppEigenForward.h:29:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase<Eigen::SparseMatrix<double, 0, int> >’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7:   required from ‘class Eigen::SparseCompressedBase<Eigen::SparseMatrix<double, 0, int> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7:   required from ‘class Eigen::SparseMatrix<double, 0, int>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   47 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase<Eigen::Map<Eigen::SparseMatrix<double, 0, int>, 0, Eigen::Stride<0, 0> > >’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7:   required from ‘class Eigen::SparseCompressedBase<Eigen::Map<Eigen::SparseMatrix<double, 0, int>, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMap.h:50:7:   required from ‘class Eigen::SparseMapBase<Eigen::Map<Eigen::SparseMatrix<double, 0, int>, 0, Eigen::Stride<0, 0> >, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMap.h:148:7:   required from ‘class Eigen::SparseMapBase<Eigen::Map<Eigen::SparseMatrix<double, 0, int>, 0, Eigen::Stride<0, 0> >, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMap.h:222:7:   required from ‘class Eigen::Map<Eigen::SparseMatrix<double, 0, int>, 0, Eigen::Stride<0, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/MappedSparseMatrix.h:32:7:   required from ‘class Eigen::MappedSparseMatrix<double>’
DecontX.cpp:20:13:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
DecontX.cpp: In function ‘Eigen::SparseMatrix<double, 0, int> calculateNativeMatrix(const Eigen::MappedSparseMatrix<double>&, const Rcpp::NumericVector&, const Rcpp::NumericMatrix&, const Rcpp::NumericMatrix&, const Rcpp::IntegerVector&, const double&)’:
DecontX.cpp:321:10: warning: variable ‘x’ set but not used [-Wunused-but-set-variable]
  321 |   double x;
      |          ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::SparseMatrix<double, 0, int>, 0, Eigen::Stride<0, 0> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:336:80:   required from ‘struct Eigen::internal::evaluator<Eigen::SparseCompressedBase<Eigen::Map<Eigen::SparseMatrix<double, 0, int>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMap.h:282:8:   required from ‘struct Eigen::internal::evaluator<Eigen::Map<Eigen::SparseMatrix<double, 0, int>, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:687:97:   required from ‘Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::SparseMatrix(const Eigen::SparseMatrixBase<OtherDerived>&) [with OtherDerived = Eigen::Map<Eigen::SparseMatrix<double, 0, int>, 0, Eigen::Stride<0, 0> >; _Scalar = double; int _Options = 0; _StorageIndex = int]’
DecontX.cpp:317:47:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   56 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::SparseMatrix<double, 0, int>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:336:80:   required from ‘struct Eigen::internal::evaluator<Eigen::SparseCompressedBase<Eigen::SparseMatrix<double, 0, int> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1505:8:   required from ‘struct Eigen::internal::evaluator<Eigen::SparseMatrix<double, 0, int> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseAssign.h:79:45:   required from ‘void Eigen::internal::assign_sparse_to_sparse(DstXprType&, const SrcXprType&) [with DstXprType = Eigen::SparseMatrix<double, 0, int>; SrcXprType = Eigen::Map<Eigen::SparseMatrix<double, 0, int>, 0, Eigen::Stride<0, 0> >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseAssign.h:132:28:   required from ‘static void Eigen::internal::Assignment<DstXprType, SrcXprType, Functor, Eigen::internal::Sparse2Sparse>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op<typename DstXprType::Scalar, typename SrcXprType::Scalar>&) [with DstXprType = Eigen::SparseMatrix<double, 0, int>; SrcXprType = Eigen::Map<Eigen::SparseMatrix<double, 0, int>, 0, Eigen::Stride<0, 0> >; Functor = Eigen::internal::assign_op<double, double>; typename DstXprType::Scalar = double; typename SrcXprType::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseAssign.h:38:16:   required from ‘Derived& Eigen::SparseMatrixBase<Derived>::operator=(const Eigen::SparseMatrixBase<OtherDerived>&) [with OtherDerived = Eigen::Map<Eigen::SparseMatrix<double, 0, int>, 0, Eigen::Stride<0, 0> >; Derived = Eigen::SparseMatrix<double, 0, int>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1239:27:   required from ‘Eigen::SparseMatrix<_Scalar, _Options, _StorageIndex>& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::operator=(const Eigen::SparseMatrixBase<OtherDerived>&) [with OtherDerived = Eigen::Map<Eigen::SparseMatrix<double, 0, int>, 0, Eigen::Stride<0, 0> >; _Scalar = double; int _Options = 0; _StorageIndex = int]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:689:15:   required from ‘Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::SparseMatrix(const Eigen::SparseMatrixBase<OtherDerived>&) [with OtherDerived = Eigen::Map<Eigen::SparseMatrix<double, 0, int>, 0, Eigen::Stride<0, 0> >; _Scalar = double; int _Options = 0; _StorageIndex = int]’
DecontX.cpp:317:47:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]


g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I"../inst/include" -I"/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include' -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include' -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppParallel/include' -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include' -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include' -I/usr/local/include    -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS   -fpic  -g -O2  -Wall  -c RcppExports.cpp -o RcppExports.o
In file included from /home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/Core:205,
                 from /home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/RcppEigenForward.h:28,
                 from /home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/RcppEigen.h:25,
                 from RcppExports.cpp:4:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:46:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes]
   46 | typedef eigen_packet_wrapper<__m128i, 0> Packet4i;
      |                                        ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:47:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes]
   47 | typedef eigen_packet_wrapper<__m128i, 1> Packet16b;
      |                                        ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:49:39: warning: ignoring attributes on template argument ‘__m128’ [-Wignored-attributes]
   49 | template<> struct is_arithmetic<__m128>  { enum { value = true }; };
      |                                       ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:50:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes]
   50 | template<> struct is_arithmetic<__m128i> { enum { value = true }; };
      |                                        ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:51:40: warning: ignoring attributes on template argument ‘__m128d’ [-Wignored-attributes]
   51 | template<> struct is_arithmetic<__m128d> { enum { value = true }; };
      |                                        ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:222:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes]
  222 | template<> struct unpacket_traits<Packet4f> {
      |                                           ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:228:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes]
  228 | template<> struct unpacket_traits<Packet2d> {
      |                                           ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1124:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes]
 1124 | ptranspose(PacketBlock<Packet4f,4>& kernel) {
      |                                  ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1129:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes]
 1129 | ptranspose(PacketBlock<Packet2d,2>& kernel) {
      |                                  ^
In file included from /home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/Core:174:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes]
   16 |   struct conj_helper<PACKET_REAL, PACKET_CPLX, false, false> {          \
      |                                                            ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’
  173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f)
      | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes]
   29 |   struct conj_helper<PACKET_CPLX, PACKET_REAL, false, false> {          \
      |                                                            ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’
  173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f)
      | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes]
   16 |   struct conj_helper<PACKET_REAL, PACKET_CPLX, false, false> {          \
      |                                                            ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’
  298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d)
      | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes]
   29 |   struct conj_helper<PACKET_CPLX, PACKET_REAL, false, false> {          \
      |                                                            ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’
  298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d)
      | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/Core:165:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet<float, 4>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57:   required from ‘struct Eigen::internal::traits<Eigen::Matrix<float, 4, 1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49:   required from ‘struct Eigen::internal::traits<Eigen::Quaternion<float> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:24:46:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<float>::type’ {aka ‘__m128’} [-Wignored-attributes]
  190 |          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
      |                                       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<float>::type’ {aka ‘__m128’} [-Wignored-attributes]
  190 |          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
      |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<float>::type’ {aka ‘__m128’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(4) float>::half’ {aka ‘__m128’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<float>::type’ {aka ‘__m128’} [-Wignored-attributes]
  208 |   typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
      |                                                                                        ^~~~
In file included from /home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/Core:271:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 3>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Matrix<float, 4, 1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Matrix<float, 4, 1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<float, 4, 1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from ‘class Eigen::Matrix<float, 4, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50:   required from ‘class Eigen::QuaternionBase<Eigen::Quaternion<float> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7:   required from ‘class Eigen::Quaternion<float>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:27:3:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<float>::type’ {aka ‘__m128’} [-Wignored-attributes]
   56 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet<double, 4>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57:   required from ‘struct Eigen::internal::traits<Eigen::Matrix<double, 4, 1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49:   required from ‘struct Eigen::internal::traits<Eigen::Quaternion<double> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:98:47:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
  190 |          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
      |                                       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
  190 |          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
      |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
  208 |   typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
      |                                                                                        ^~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 3>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Matrix<double, 4, 1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Matrix<double, 4, 1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<double, 4, 1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from ‘class Eigen::Matrix<double, 4, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50:   required from ‘class Eigen::QuaternionBase<Eigen::Quaternion<double> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7:   required from ‘class Eigen::Quaternion<double>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:102:3:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   56 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
In file included from /home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/SparseCore:37,
                 from /home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/Sparse:26,
                 from /home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/RcppEigenForward.h:29:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase<Eigen::SparseMatrix<double, 0, int> >’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7:   required from ‘class Eigen::SparseCompressedBase<Eigen::SparseMatrix<double, 0, int> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7:   required from ‘class Eigen::SparseMatrix<double, 0, int>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   47 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase<Eigen::Map<Eigen::SparseMatrix<double, 0, int>, 0, Eigen::Stride<0, 0> > >’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7:   required from ‘class Eigen::SparseCompressedBase<Eigen::Map<Eigen::SparseMatrix<double, 0, int>, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMap.h:50:7:   required from ‘class Eigen::SparseMapBase<Eigen::Map<Eigen::SparseMatrix<double, 0, int>, 0, Eigen::Stride<0, 0> >, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMap.h:148:7:   required from ‘class Eigen::SparseMapBase<Eigen::Map<Eigen::SparseMatrix<double, 0, int>, 0, Eigen::Stride<0, 0> >, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMap.h:222:7:   required from ‘class Eigen::Map<Eigen::SparseMatrix<double, 0, int>, 0, Eigen::Stride<0, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/MappedSparseMatrix.h:32:7:   required from ‘class Eigen::MappedSparseMatrix<double>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include/Rcpp/InputParameter.h:77:11:   required from ‘class Rcpp::ConstReferenceInputParameter<Eigen::MappedSparseMatrix<double> >’
RcppExports.cpp:20:102:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]


g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I"../inst/include" -I"/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include' -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include' -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppParallel/include' -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include' -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include' -I/usr/local/include    -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS   -fpic  -g -O2  -Wall  -c matrixNorm.cpp -o matrixNorm.o


gcc -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I"../inst/include" -I"/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include' -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include' -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppParallel/include' -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include' -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include' -I/usr/local/include    -fpic  -g -O2  -Wall -c matrixSums.c -o matrixSums.o


g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I"../inst/include" -I"/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include' -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include' -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppParallel/include' -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include' -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include' -I/usr/local/include    -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS   -fpic  -g -O2  -Wall  -c matrixSumsSparse.cpp -o matrixSumsSparse.o
In file included from /home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/Core:205,
                 from /home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/RcppEigenForward.h:28,
                 from /home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/RcppEigen.h:25,
                 from matrixSumsSparse.cpp:1:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:46:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes]
   46 | typedef eigen_packet_wrapper<__m128i, 0> Packet4i;
      |                                        ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:47:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes]
   47 | typedef eigen_packet_wrapper<__m128i, 1> Packet16b;
      |                                        ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:49:39: warning: ignoring attributes on template argument ‘__m128’ [-Wignored-attributes]
   49 | template<> struct is_arithmetic<__m128>  { enum { value = true }; };
      |                                       ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:50:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes]
   50 | template<> struct is_arithmetic<__m128i> { enum { value = true }; };
      |                                        ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:51:40: warning: ignoring attributes on template argument ‘__m128d’ [-Wignored-attributes]
   51 | template<> struct is_arithmetic<__m128d> { enum { value = true }; };
      |                                        ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:222:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes]
  222 | template<> struct unpacket_traits<Packet4f> {
      |                                           ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:228:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes]
  228 | template<> struct unpacket_traits<Packet2d> {
      |                                           ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1124:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes]
 1124 | ptranspose(PacketBlock<Packet4f,4>& kernel) {
      |                                  ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1129:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes]
 1129 | ptranspose(PacketBlock<Packet2d,2>& kernel) {
      |                                  ^
In file included from /home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/Core:174:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes]
   16 |   struct conj_helper<PACKET_REAL, PACKET_CPLX, false, false> {          \
      |                                                            ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’
  173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f)
      | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes]
   29 |   struct conj_helper<PACKET_CPLX, PACKET_REAL, false, false> {          \
      |                                                            ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’
  173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f)
      | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes]
   16 |   struct conj_helper<PACKET_REAL, PACKET_CPLX, false, false> {          \
      |                                                            ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’
  298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d)
      | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes]
   29 |   struct conj_helper<PACKET_CPLX, PACKET_REAL, false, false> {          \
      |                                                            ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’
  298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d)
      | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/Core:165:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet<float, 4>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57:   required from ‘struct Eigen::internal::traits<Eigen::Matrix<float, 4, 1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49:   required from ‘struct Eigen::internal::traits<Eigen::Quaternion<float> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:24:46:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<float>::type’ {aka ‘__m128’} [-Wignored-attributes]
  190 |          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
      |                                       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<float>::type’ {aka ‘__m128’} [-Wignored-attributes]
  190 |          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
      |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<float>::type’ {aka ‘__m128’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(4) float>::half’ {aka ‘__m128’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<float>::type’ {aka ‘__m128’} [-Wignored-attributes]
  208 |   typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
      |                                                                                        ^~~~
In file included from /home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/Core:271:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 3>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Matrix<float, 4, 1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Matrix<float, 4, 1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<float, 4, 1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from ‘class Eigen::Matrix<float, 4, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50:   required from ‘class Eigen::QuaternionBase<Eigen::Quaternion<float> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7:   required from ‘class Eigen::Quaternion<float>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:27:3:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<float>::type’ {aka ‘__m128’} [-Wignored-attributes]
   56 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet<double, 4>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57:   required from ‘struct Eigen::internal::traits<Eigen::Matrix<double, 4, 1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49:   required from ‘struct Eigen::internal::traits<Eigen::Quaternion<double> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:98:47:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
  190 |          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
      |                                       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
  190 |          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
      |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
  208 |   typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
      |                                                                                        ^~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 3>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Matrix<double, 4, 1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Matrix<double, 4, 1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<double, 4, 1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from ‘class Eigen::Matrix<double, 4, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50:   required from ‘class Eigen::QuaternionBase<Eigen::Quaternion<double> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7:   required from ‘class Eigen::Quaternion<double>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:102:3:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   56 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
In file included from /home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/SparseCore:37,
                 from /home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/Sparse:26,
                 from /home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/RcppEigenForward.h:29:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase<Eigen::SparseMatrix<double, 0, int> >’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7:   required from ‘class Eigen::SparseCompressedBase<Eigen::SparseMatrix<double, 0, int> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7:   required from ‘class Eigen::SparseMatrix<double, 0, int>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   47 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase<Eigen::Map<Eigen::SparseMatrix<double, 0, int>, 0, Eigen::Stride<0, 0> > >’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7:   required from ‘class Eigen::SparseCompressedBase<Eigen::Map<Eigen::SparseMatrix<double, 0, int>, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMap.h:50:7:   required from ‘class Eigen::SparseMapBase<Eigen::Map<Eigen::SparseMatrix<double, 0, int>, 0, Eigen::Stride<0, 0> >, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMap.h:148:7:   required from ‘class Eigen::SparseMapBase<Eigen::Map<Eigen::SparseMatrix<double, 0, int>, 0, Eigen::Stride<0, 0> >, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMap.h:222:7:   required from ‘class Eigen::Map<Eigen::SparseMatrix<double, 0, int>, 0, Eigen::Stride<0, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/MappedSparseMatrix.h:32:7:   required from ‘class Eigen::MappedSparseMatrix<double>’
matrixSumsSparse.cpp:15:13:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]


g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I"../inst/include" -I"/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include' -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include' -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppParallel/include' -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include' -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include' -I/usr/local/include    -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS   -fpic  -g -O2  -Wall  -c stanExports_shrinkage.cc -o stanExports_shrinkage.o
In file included from /home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/Core:205,
                 from /home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22,
                 from /home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/rstaninc.hpp:3,
                 from stanExports_shrinkage.h:23,
                 from stanExports_shrinkage.cc:5:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:46:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes]
   46 | typedef eigen_packet_wrapper<__m128i, 0> Packet4i;
      |                                        ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:47:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes]
   47 | typedef eigen_packet_wrapper<__m128i, 1> Packet16b;
      |                                        ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:49:39: warning: ignoring attributes on template argument ‘__m128’ [-Wignored-attributes]
   49 | template<> struct is_arithmetic<__m128>  { enum { value = true }; };
      |                                       ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:50:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes]
   50 | template<> struct is_arithmetic<__m128i> { enum { value = true }; };
      |                                        ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:51:40: warning: ignoring attributes on template argument ‘__m128d’ [-Wignored-attributes]
   51 | template<> struct is_arithmetic<__m128d> { enum { value = true }; };
      |                                        ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:222:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes]
  222 | template<> struct unpacket_traits<Packet4f> {
      |                                           ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:228:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes]
  228 | template<> struct unpacket_traits<Packet2d> {
      |                                           ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1124:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes]
 1124 | ptranspose(PacketBlock<Packet4f,4>& kernel) {
      |                                  ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1129:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes]
 1129 | ptranspose(PacketBlock<Packet2d,2>& kernel) {
      |                                  ^
In file included from /home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/Core:174:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes]
   16 |   struct conj_helper<PACKET_REAL, PACKET_CPLX, false, false> {          \
      |                                                            ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’
  173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f)
      | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes]
   29 |   struct conj_helper<PACKET_CPLX, PACKET_REAL, false, false> {          \
      |                                                            ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’
  173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f)
      | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes]
   16 |   struct conj_helper<PACKET_REAL, PACKET_CPLX, false, false> {          \
      |                                                            ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’
  298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d)
      | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes]
   29 |   struct conj_helper<PACKET_CPLX, PACKET_REAL, false, false> {          \
      |                                                            ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’
  298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d)
      | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/Core:165:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet<float, 4>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57:   required from ‘struct Eigen::internal::traits<Eigen::Matrix<float, 4, 1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49:   required from ‘struct Eigen::internal::traits<Eigen::Quaternion<float> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:24:46:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<float>::type’ {aka ‘__m128’} [-Wignored-attributes]
  190 |          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
      |                                       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<float>::type’ {aka ‘__m128’} [-Wignored-attributes]
  190 |          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
      |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<float>::type’ {aka ‘__m128’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(4) float>::half’ {aka ‘__m128’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<float>::type’ {aka ‘__m128’} [-Wignored-attributes]
  208 |   typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
      |                                                                                        ^~~~
In file included from /home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/Core:271:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 3>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Matrix<float, 4, 1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Matrix<float, 4, 1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<float, 4, 1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from ‘class Eigen::Matrix<float, 4, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50:   required from ‘class Eigen::QuaternionBase<Eigen::Quaternion<float> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7:   required from ‘class Eigen::Quaternion<float>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:27:3:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<float>::type’ {aka ‘__m128’} [-Wignored-attributes]
   56 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet<double, 4>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57:   required from ‘struct Eigen::internal::traits<Eigen::Matrix<double, 4, 1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49:   required from ‘struct Eigen::internal::traits<Eigen::Quaternion<double> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:98:47:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
  190 |          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
      |                                       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
  190 |          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
      |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
  208 |   typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
      |                                                                                        ^~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 3>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Matrix<double, 4, 1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Matrix<double, 4, 1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<double, 4, 1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from ‘class Eigen::Matrix<double, 4, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50:   required from ‘class Eigen::QuaternionBase<Eigen::Quaternion<double> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7:   required from ‘class Eigen::Quaternion<double>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:102:3:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   56 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
In file included from /home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:18,
                 from /home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/date_time/time_clock.hpp:17,
                 from /home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/date_time/posix_time/posix_time_types.hpp:10,
                 from /home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:15,
                 from /home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/rstaninc.hpp:4:
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
  361 |     explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
      |                                 ^~~~~~~~
In file included from /usr/include/c++/13/memory:78,
                 from /home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:7:
/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here
   65 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:251:65: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
  251 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
      |                                                                 ^~~~~~~~
/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here
   65 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:508:31: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
  508 |     explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
      |                               ^~~~~~~~
/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here
   65 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:521:22: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
  521 |     shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
      |                      ^~~~~~~~
/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here
   65 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:604:34: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
  604 |     shared_ptr & operator=( std::auto_ptr<Y> & r )
      |                                  ^~~~~~~~
/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here
   65 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:613:34: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
  613 |     shared_ptr & operator=( std::auto_ptr<Y> && r )
      |                                  ^~~~~~~~
/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here
   65 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:615:38: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
  615 |         this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
      |                                      ^~~~~~~~
/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here
   65 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/SparseCore:37,
                 from /home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/Sparse:26,
                 from /home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase<Eigen::SparseMatrix<double, 0, int> >’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7:   required from ‘class Eigen::SparseCompressedBase<Eigen::SparseMatrix<double, 0, int> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7:   required from ‘class Eigen::SparseMatrix<double, 0, int>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   47 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet<double, -1>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57:   required from ‘struct Eigen::internal::traits<Eigen::Matrix<double, -1, -1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:19:52:   required from ‘struct Eigen::internal::traits<Eigen::LDLT<Eigen::Matrix<double, -1, -1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/EigenBase.h:42:59:   required from ‘struct Eigen::EigenBase<Eigen::LDLT<Eigen::Matrix<double, -1, -1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/SolverBase.h:68:7:   required from ‘class Eigen::SolverBase<Eigen::LDLT<Eigen::Matrix<double, -1, -1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:59:49:   required from ‘class Eigen::LDLT<Eigen::Matrix<double, -1, -1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:46:15:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
  190 |          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
      |                                       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
  190 |          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
      |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
  208 |   typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
      |                                                                                        ^~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, -1>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, -1>, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, -1>, 3>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Matrix<double, -1, -1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Matrix<double, -1, -1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<double, -1, -1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from ‘class Eigen::Matrix<double, -1, -1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:69:42:   required from ‘class Eigen::LDLT<Eigen::Matrix<double, -1, -1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:46:15:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   56 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, 1>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, 1>, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, 1>, 3>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Matrix<double, -1, 1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Matrix<double, -1, 1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<double, -1, 1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from ‘class Eigen::Matrix<double, -1, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:287:19:   required from ‘class Eigen::LDLT<Eigen::Matrix<double, -1, -1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:46:15:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0>, 2>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Diagonal.h:63:53:   required from ‘class Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:47:29:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> >, 2>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::ArrayWrapper<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::ArrayWrapper<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7:   required from ‘class Eigen::ArrayWrapper<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:47:41:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7:   required from ‘class Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:38:28:   required from ‘struct Eigen::internal::traits<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LE>, const Eigen::ArrayWrapper<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LE>, const Eigen::ArrayWrapper<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LE>, const Eigen::ArrayWrapper<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:47:45:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, 3>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34:   required from ‘class Eigen::MapBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7:   required from ‘class Eigen::internal::BlockImpl_dense<Eigen::Matrix<double, -1, -1>, -1, 1, true, true>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   required from ‘class Eigen::BlockImpl<Eigen::Matrix<double, -1, -1>, -1, 1, true, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81:   required from ‘class Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/multiply_lower_tri_self_transpose.hpp:35:26:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, 3>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34:   required from ‘class Eigen::MapBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7:   required from ‘class Eigen::internal::BlockImpl_dense<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false, true>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   required from ‘class Eigen::BlockImpl<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81:   required from ‘class Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/VectorBlock.h:56:47:   required from ‘class Eigen::VectorBlock<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/multiply_lower_tri_self_transpose.hpp:35:34:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double>, Eigen::Matrix<double, -1, 1> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double>, Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double>, Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7:   required from ‘class Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double>, Eigen::Matrix<double, -1, 1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/linspaced_array.hpp:37:49:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 1, -1>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 1, -1>, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 1, -1>, 3>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Matrix<double, 1, -1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Matrix<double, 1, -1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<double, 1, -1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from ‘class Eigen::Matrix<double, 1, -1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/linspaced_row_vector.hpp:32:28:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double>, Eigen::Matrix<double, 1, -1> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double>, Eigen::Matrix<double, 1, -1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double>, Eigen::Matrix<double, 1, -1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7:   required from ‘class Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double>, Eigen::Matrix<double, 1, -1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/linspaced_row_vector.hpp:32:39:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Array<double, -1, 1>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Array<double, -1, 1>, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Array<double, -1, 1>, 3>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Array<double, -1, 1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::Array<double, -1, 1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from ‘class Eigen::PlainObjectBase<Eigen::Array<double, -1, 1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Array.h:45:7:   required from ‘class Eigen::Array<double, -1, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lmgamma.hpp:58:53:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double>, Eigen::Array<double, -1, 1> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double>, Eigen::Array<double, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double>, Eigen::Array<double, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7:   required from ‘class Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double>, Eigen::Array<double, -1, 1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lmgamma.hpp:58:72:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double>, Eigen::Array<double, -1, 1> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double>, Eigen::Array<double, -1, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double>, Eigen::Array<double, -1, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double>, Eigen::Array<double, -1, 1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double>, Eigen::Array<double, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lmgamma.hpp:58:77:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Diagonal<Eigen::Matrix<double, -1, -1>, 0>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Diagonal<Eigen::Matrix<double, -1, -1>, 0>, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Diagonal<Eigen::Matrix<double, -1, -1>, 0>, 3>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Diagonal<Eigen::Matrix<double, -1, -1>, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Diagonal<Eigen::Matrix<double, -1, -1>, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Diagonal.h:63:53:   required from ‘class Eigen::Diagonal<Eigen::Matrix<double, -1, -1>, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/matrix_exp_action_handler.hpp:71:17:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<Eigen::Diagonal<Eigen::Matrix<double, -1, -1>, 0> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<Eigen::Diagonal<Eigen::Matrix<double, -1, -1>, 0> >, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<Eigen::Diagonal<Eigen::Matrix<double, -1, -1>, 0> >, 3>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::ArrayWrapper<Eigen::Diagonal<Eigen::Matrix<double, -1, -1>, 0> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::ArrayWrapper<Eigen::Diagonal<Eigen::Matrix<double, -1, -1>, 0> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7:   required from ‘class Eigen::ArrayWrapper<Eigen::Diagonal<Eigen::Matrix<double, -1, -1>, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/matrix_exp_action_handler.hpp:71:29:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, -1>, 0>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, -1>, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, -1>, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7:   required from ‘class Eigen::internal::dense_product_base<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, -1>, 0, 8>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7:   required from ‘class Eigen::ProductImpl<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, -1>, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, -1>, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/matrix_exp_action_handler.hpp:86:43:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Matrix<double, -1, -1> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Matrix<double, -1, -1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Matrix<double, -1, -1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_abs_op<double>, const Eigen::Matrix<double, -1, -1>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Matrix<double, -1, -1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/matrix_exp_action_handler.hpp:106:22:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::PartialReduxExpr<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Matrix<double, -1, -1> >, Eigen::internal::member_sum<double, double>, 1>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::PartialReduxExpr<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Matrix<double, -1, -1> >, Eigen::internal::member_sum<double, double>, 1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::PartialReduxExpr<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Matrix<double, -1, -1> >, Eigen::internal::member_sum<double, double>, 1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/VectorwiseOp.h:56:7:   required from ‘class Eigen::PartialReduxExpr<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Matrix<double, -1, -1> >, Eigen::internal::member_sum<double, double>, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/matrix_exp_action_handler.hpp:106:38:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, -1> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, -1> >, 2>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, -1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, -1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7:   required from ‘class Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, -1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/ceil.hpp:57:52:   required from ‘stan::math::ceil<Eigen::Matrix<double, -1, -1> >(const Eigen::Matrix<double, -1, -1>&)::<lambda(const auto:244&)> [with auto:244 = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:47:25:   required from ‘static auto stan::math::apply_vector_unary<T, typename std::enable_if<stan::is_eigen<typename std::decay<_Tp>::type>::value, void>::type>::apply(const T&, const F&) [with F = stan::math::ceil<Eigen::Matrix<double, -1, -1> >(const Eigen::Matrix<double, -1, -1>&)::<lambda(const auto:244&)>; T2 = Eigen::Matrix<double, -1, -1>; stan::require_t<stan::is_eigen_matrix_base<typename stan::plain_type<T2, void>::type> >* <anonymous> = 0; T = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/ceil.hpp:56:46:   required from ‘auto stan::math::ceil(const Container&) [with Container = Eigen::Matrix<double, -1, -1>; stan::require_container_st<std::is_arithmetic, Container>* <anonymous> = 0; stan::require_not_var_matrix_t<Container>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/matrix_exp_action_handler.hpp:197:41:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_ceil_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, -1> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_ceil_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, -1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_ceil_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, -1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_ceil_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, -1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp<Eigen::internal::scalar_ceil_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, -1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/ceil.hpp:57:52:   required from ‘stan::math::ceil<Eigen::Matrix<double, -1, -1> >(const Eigen::Matrix<double, -1, -1>&)::<lambda(const auto:244&)> [with auto:244 = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:47:25:   required from ‘static auto stan::math::apply_vector_unary<T, typename std::enable_if<stan::is_eigen<typename std::decay<_Tp>::type>::value, void>::type>::apply(const T&, const F&) [with F = stan::math::ceil<Eigen::Matrix<double, -1, -1> >(const Eigen::Matrix<double, -1, -1>&)::<lambda(const auto:244&)>; T2 = Eigen::Matrix<double, -1, -1>; stan::require_t<stan::is_eigen_matrix_base<typename stan::plain_type<T2, void>::type> >* <anonymous> = 0; T = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/ceil.hpp:56:46:   required from ‘auto stan::math::ceil(const Container&) [with Container = Eigen::Matrix<double, -1, -1>; stan::require_container_st<std::is_arithmetic, Container>* <anonymous> = 0; stan::require_not_var_matrix_t<Container>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/matrix_exp_action_handler.hpp:197:41:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::MatrixWrapper<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_ceil_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, -1> > > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::MatrixWrapper<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_ceil_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, -1> > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::MatrixWrapper<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_ceil_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, -1> > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:140:7:   required from ‘class Eigen::MatrixWrapper<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_ceil_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, -1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:46:70:   required from ‘stan::math::apply_vector_unary<Eigen::Matrix<double, -1, -1>, void>::apply<stan::math::ceil<Eigen::Matrix<double, -1, -1> >(const Eigen::Matrix<double, -1, -1>&)::<lambda(const auto:244&)> >(const Eigen::Matrix<double, -1, -1>&, const stan::math::ceil<Eigen::Matrix<double, -1, -1> >(const Eigen::Matrix<double, -1, -1>&)::<lambda(const auto:244&)>&)::<lambda(const auto:6&)> [with auto:6 = Eigen::CwiseUnaryOp<Eigen::internal::scalar_ceil_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, -1> > >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/holder.hpp:370:41:   required by substitution of ‘template<class F, class ... Args, stan::require_plain_type_t<decltype (declval<F>()((declval<Args&>)()...))>* <anonymous> > auto stan::math::make_holder(const F&, Args&& ...) [with F = stan::math::apply_vector_unary<Eigen::Matrix<double, -1, -1>, void>::apply<stan::math::ceil<Eigen::Matrix<double, -1, -1> >(const Eigen::Matrix<double, -1, -1>&)::<lambda(const auto:244&)> >(const Eigen::Matrix<double, -1, -1>&, const stan::math::ceil<Eigen::Matrix<double, -1, -1> >(const Eigen::Matrix<double, -1, -1>&)::<lambda(const auto:244&)>&)::<lambda(const auto:6&)>; Args = {Eigen::CwiseUnaryOp<Eigen::internal::scalar_ceil_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, -1, 0, -1, -1> > >}; stan::require_plain_type_t<decltype (declval<F>()((declval<Args&>)()...))>* <anonymous> = <missing>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:46:23:   required from ‘static auto stan::math::apply_vector_unary<T, typename std::enable_if<stan::is_eigen<typename std::decay<_Tp>::type>::value, void>::type>::apply(const T&, const F&) [with F = stan::math::ceil<Eigen::Matrix<double, -1, -1> >(const Eigen::Matrix<double, -1, -1>&)::<lambda(const auto:244&)>; T2 = Eigen::Matrix<double, -1, -1>; stan::require_t<stan::is_eigen_matrix_base<typename stan::plain_type<T2, void>::type> >* <anonymous> = 0; T = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/ceil.hpp:56:46:   required from ‘auto stan::math::ceil(const Container&) [with Container = Eigen::Matrix<double, -1, -1>; stan::require_container_st<std::is_arithmetic, Container>* <anonymous> = 0; stan::require_not_var_matrix_t<Container>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/matrix_exp_action_handler.hpp:197:41:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::PartialReduxExpr<Eigen::Matrix<double, -1, -1>, Eigen::internal::member_minCoeff<double, double>, 0>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::PartialReduxExpr<Eigen::Matrix<double, -1, -1>, Eigen::internal::member_minCoeff<double, double>, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::PartialReduxExpr<Eigen::Matrix<double, -1, -1>, Eigen::internal::member_minCoeff<double, double>, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/VectorwiseOp.h:56:7:   required from ‘class Eigen::PartialReduxExpr<Eigen::Matrix<double, -1, -1>, Eigen::internal::member_minCoeff<double, double>, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/matrix_exp_action_handler.hpp:203:38:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 1, -1> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 1, -1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 1, -1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7:   required from ‘class Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 1, -1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/one_hot_row_vector.hpp:25:52:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7:   required from ‘class Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/one_hot_vector.hpp:25:46:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, -1> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, -1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, -1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7:   required from ‘class Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, -1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/welford_covar_estimator.hpp:13:64:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/welford_covar_estimator.hpp:26:31:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7:   required from ‘class Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:38:28:   required from ‘struct Eigen::internal::traits<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/welford_covar_estimator.hpp:27:19:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/welford_covar_estimator.hpp:27:19:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Matrix<double, -1, 1> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Matrix<double, -1, 1> >, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Matrix<double, -1, 1> >, 3>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37:   required from ‘class Eigen::TransposeImpl<Eigen::Matrix<double, -1, 1>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   required from ‘class Eigen::Transpose<Eigen::Matrix<double, -1, 1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/welford_covar_estimator.hpp:28:38:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> >, Eigen::Transpose<Eigen::Matrix<double, -1, 1> >, 0>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> >, Eigen::Transpose<Eigen::Matrix<double, -1, 1> >, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> >, Eigen::Transpose<Eigen::Matrix<double, -1, 1> >, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7:   required from ‘class Eigen::internal::dense_product_base<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> >, Eigen::Transpose<Eigen::Matrix<double, -1, 1> >, 0, 5>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7:   required from ‘class Eigen::ProductImpl<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> >, Eigen::Transpose<Eigen::Matrix<double, -1, 1> >, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> >, Eigen::Transpose<Eigen::Matrix<double, -1, 1> >, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/welford_covar_estimator.hpp:28:39:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7:   required from ‘class Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:38:28:   required from ‘struct Eigen::internal::traits<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/welford_covar_estimator.hpp:37:40:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/welford_covar_estimator.hpp:37:40:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/welford_var_estimator.hpp:28:30:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
In file included from /home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor.hpp:13,
                 from /home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim.hpp:15,
                 from /home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/dump.hpp:7,
                 from /home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:43:
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/hcubature.hpp: In function ‘void stan::math::internal::combination(std::vector<int>&, const int&, const int&, const int&)’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/hcubature.hpp:73:29: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
   73 |   for (std::size_t i = 0; i < p - 1; i++) {
      |                           ~~^~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/hcubature.hpp:79:16: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare]
   79 |     } while (k < x);
      |              ~~^~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/hcubature.hpp: In function ‘void stan::math::internal::combos(const int&, const double&, const int&, std::vector<std::vector<double> >&)’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/hcubature.hpp:102:29: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  102 |   for (std::size_t i = 1; i != choose_dimk + 1; i++) {
      |                           ~~^~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/hcubature.hpp:105:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare]
  105 |     for (std::size_t j = 0; j != k; j++) {
      |                             ~~^~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/hcubature.hpp: In function ‘void stan::math::internal::increment(std::vector<bool>&, const int&, const double&, const std::vector<int>&, std::vector<double>&)’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/hcubature.hpp:126:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare]
  126 |     for (std::size_t j = 0; j != k; j++) {
      |                             ~~^~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/hcubature.hpp:132:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<bool>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  132 |   while ((first_zero < index.size()) && index[first_zero]) {
      |           ~~~~~~~~~~~^~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/hcubature.hpp:135:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<bool>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  135 |   if (first_zero == index.size()) {
      |       ~~~~~~~~~~~^~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/hcubature.hpp:143:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  143 |     for (std::size_t i = 0; i != first_zero + 1; i++) {
      |                             ~~^~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/hcubature.hpp: In function ‘void stan::math::internal::signcombos(const int&, const double&, const int&, std::vector<std::vector<double> >&)’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/hcubature.hpp:168:29: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  168 |   for (std::size_t i = 1; i != choose_dimk + 1; i++) {
      |                           ~~^~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, 2>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Map.h:94:79:   required from ‘class Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/ode_store_sensitivities.hpp:40:64:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   56 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
In file included from /home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/mpl/aux_/na_assert.hpp:23,
                 from /home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/mpl/arg.hpp:25,
                 from /home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/mpl/placeholders.hpp:24,
                 from /home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/mpl/apply.hpp:24,
                 from /home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/serialization/array_optimization.hpp:18,
                 from /home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/serialization/array_wrapper.hpp:21,
                 from /home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/serialization/array.hpp:26,
                 from /home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/numeric/ublas/storage.hpp:22,
                 from /home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/numeric/ublas/vector.hpp:21,
                 from /home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:23,
                 from /home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/numeric/odeint.hpp:25,
                 from /home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9,
                 from /home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6,
                 from /home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor.hpp:16:
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/mpl/assert.hpp: At global scope:
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of ‘assert_arg’ [-Wparentheses]
  194 | failed ************ (Pred::************
      |                     ^~~~~~~~~~~~~~~~~~~
  195 |       assert_arg( void (*)(Pred), typename assert_arg_pred<Pred>::type )
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  196 |     );
      |     ~                
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/mpl/assert.hpp:194:21: note: remove parentheses
  194 | failed ************ (Pred::************
      |                     ^~~~~~~~~~~~~~~~~~~
      |                     -
  195 |       assert_arg( void (*)(Pred), typename assert_arg_pred<Pred>::type )
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  196 |     );
      |     ~                
      |     -
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of ‘assert_not_arg’ [-Wparentheses]
  199 | failed ************ (boost::mpl::not_<Pred>::************
      |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  200 |       assert_not_arg( void (*)(Pred), typename assert_arg_pred_not<Pred>::type )
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  201 |     );
      |     ~                
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/mpl/assert.hpp:199:21: note: remove parentheses
  199 | failed ************ (boost::mpl::not_<Pred>::************
      |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      |                     -
  200 |       assert_not_arg( void (*)(Pred), typename assert_arg_pred_not<Pred>::type )
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  201 |     );
      |     ~                
      |     -
In file included from /home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/numeric/ublas/traits.hpp:21,
                 from /home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/numeric/ublas/storage.hpp:27:
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/numeric/ublas/detail/iterator.hpp:111:21: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
  111 |         public std::iterator<IC, T> {
      |                     ^~~~~~~~
In file included from /usr/include/c++/13/bits/stl_algobase.h:65,
                 from /usr/include/c++/13/bits/specfun.h:43,
                 from /usr/include/c++/13/cmath:3699,
                 from /home/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include/Rcpp/platform/compiler.h:100,
                 from /home/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include/Rcpp/r/headers.h:66,
                 from /home/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include/RcppCommon.h:30,
                 from /home/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include/Rcpp.h:27,
                 from stanExports_shrinkage.cc:3:
/usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/numeric/ublas/detail/iterator.hpp:149:21: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
  149 |         public std::iterator<IC, T> {
      |                     ^~~~~~~~
/usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/numeric/ublas/detail/iterator.hpp:204:21: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
  204 |         public std::iterator<IC, T> {
      |                     ^~~~~~~~
/usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
In file included from /home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/fusion/functional/invocation/detail/that_ptr.hpp:13,
                 from /home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/fusion/functional/invocation/invoke.hpp:52,
                 from /home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/fusion/functional/adapter/fused.hpp:17,
                 from /home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/fusion/functional/generation/make_fused.hpp:13,
                 from /home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/fusion/include/make_fused.hpp:11,
                 from /home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/numeric/odeint/util/resize.hpp:28,
                 from /home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/numeric/odeint/util/state_wrapper.hpp:26,
                 from /home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:33:
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/get_pointer.hpp:48:40: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   48 | template<class T> T * get_pointer(std::auto_ptr<T> const& p)
      |                                        ^~~~~~~~
/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here
   65 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, 2>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7:   required from ‘class Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/log_sum_exp.hpp:92:42:   required from ‘stan::math::log_sum_exp<Eigen::Matrix<double, -1, 1> >(const Eigen::Matrix<double, -1, 1>&)::<lambda(const auto:304&)> [with auto:304 = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:93:13:   required from ‘static auto stan::math::apply_vector_unary<T, typename std::enable_if<stan::is_eigen<typename std::decay<_Tp>::type>::value, void>::type>::reduce(const T&, const F&) [with F = stan::math::log_sum_exp<Eigen::Matrix<double, -1, 1> >(const Eigen::Matrix<double, -1, 1>&)::<lambda(const auto:304&)>; T = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/log_sum_exp.hpp:83:39:   required from ‘auto stan::math::log_sum_exp(const T&) [with T = Eigen::Matrix<double, -1, 1>; stan::require_container_st<std::is_arithmetic, Container>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/dirichlet_rng.hpp:59:35:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   56 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7:   required from ‘class Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:38:28:   required from ‘struct Eigen::internal::traits<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/log_sum_exp.hpp:92:42:   required from ‘stan::math::log_sum_exp<Eigen::Matrix<double, -1, 1> >(const Eigen::Matrix<double, -1, 1>&)::<lambda(const auto:304&)> [with auto:304 = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:93:13:   required from ‘static auto stan::math::apply_vector_unary<T, typename std::enable_if<stan::is_eigen<typename std::decay<_Tp>::type>::value, void>::type>::reduce(const T&, const F&) [with F = stan::math::log_sum_exp<Eigen::Matrix<double, -1, 1> >(const Eigen::Matrix<double, -1, 1>&)::<lambda(const auto:304&)>; T = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/log_sum_exp.hpp:83:39:   required from ‘auto stan::math::log_sum_exp(const T&) [with T = Eigen::Matrix<double, -1, 1>; stan::require_container_st<std::is_arithmetic, Container>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/dirichlet_rng.hpp:59:35:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/log_sum_exp.hpp:92:42:   required from ‘stan::math::log_sum_exp<Eigen::Matrix<double, -1, 1> >(const Eigen::Matrix<double, -1, 1>&)::<lambda(const auto:304&)> [with auto:304 = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:93:13:   required from ‘static auto stan::math::apply_vector_unary<T, typename std::enable_if<stan::is_eigen<typename std::decay<_Tp>::type>::value, void>::type>::reduce(const T&, const F&) [with F = stan::math::log_sum_exp<Eigen::Matrix<double, -1, 1> >(const Eigen::Matrix<double, -1, 1>&)::<lambda(const auto:304&)>; T = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/log_sum_exp.hpp:83:39:   required from ‘auto stan::math::log_sum_exp(const T&) [with T = Eigen::Matrix<double, -1, 1>; stan::require_container_st<std::is_arithmetic, Container>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/dirichlet_rng.hpp:59:35:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_exp_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/log_sum_exp.hpp:92:26:   required from ‘stan::math::log_sum_exp<Eigen::Matrix<double, -1, 1> >(const Eigen::Matrix<double, -1, 1>&)::<lambda(const auto:304&)> [with auto:304 = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:93:13:   required from ‘static auto stan::math::apply_vector_unary<T, typename std::enable_if<stan::is_eigen<typename std::decay<_Tp>::type>::value, void>::type>::reduce(const T&, const F&) [with F = stan::math::log_sum_exp<Eigen::Matrix<double, -1, 1> >(const Eigen::Matrix<double, -1, 1>&)::<lambda(const auto:304&)>; T = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/log_sum_exp.hpp:83:39:   required from ‘auto stan::math::log_sum_exp(const T&) [with T = Eigen::Matrix<double, -1, 1>; stan::require_container_st<std::is_arithmetic, Container>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/dirichlet_rng.hpp:59:35:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_sqrt_op<double>, const Eigen::ArrayWrapper<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_sqrt_op<double>, const Eigen::ArrayWrapper<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_sqrt_op<double>, const Eigen::ArrayWrapper<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_sqrt_op<double>, const Eigen::ArrayWrapper<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp<Eigen::internal::scalar_sqrt_op<double>, const Eigen::ArrayWrapper<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/gaussian_dlm_obs_rng.hpp:38:59:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Product<Eigen::TriangularView<const Eigen::Matrix<double, -1, -1>, 5>, Eigen::Matrix<double, -1, 1>, 0>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Product<Eigen::TriangularView<const Eigen::Matrix<double, -1, -1>, 5>, Eigen::Matrix<double, -1, 1>, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Product<Eigen::TriangularView<const Eigen::Matrix<double, -1, -1>, 5>, Eigen::Matrix<double, -1, 1>, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7:   required from ‘class Eigen::internal::dense_product_base<Eigen::TriangularView<const Eigen::Matrix<double, -1, -1>, 5>, Eigen::Matrix<double, -1, 1>, 0, 7>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7:   required from ‘class Eigen::ProductImpl<Eigen::TriangularView<const Eigen::Matrix<double, -1, -1>, 5>, Eigen::Matrix<double, -1, 1>, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product<Eigen::TriangularView<const Eigen::Matrix<double, -1, -1>, 5>, Eigen::Matrix<double, -1, 1>, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/gaussian_dlm_obs_rng.hpp:46:75:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Product<Eigen::Transpose<Eigen::TranspositionsBase<Eigen::Transpositions<-1, -1, int> > >, Eigen::Product<Eigen::TriangularView<const Eigen::Matrix<double, -1, -1>, 5>, Eigen::Matrix<double, -1, 1>, 0>, 2>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Product<Eigen::Transpose<Eigen::TranspositionsBase<Eigen::Transpositions<-1, -1, int> > >, Eigen::Product<Eigen::TriangularView<const Eigen::Matrix<double, -1, -1>, 5>, Eigen::Matrix<double, -1, 1>, 0>, 2> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Product<Eigen::Transpose<Eigen::TranspositionsBase<Eigen::Transpositions<-1, -1, int> > >, Eigen::Product<Eigen::TriangularView<const Eigen::Matrix<double, -1, -1>, 5>, Eigen::Matrix<double, -1, 1>, 0>, 2> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7:   required from ‘class Eigen::internal::dense_product_base<Eigen::Transpose<Eigen::TranspositionsBase<Eigen::Transpositions<-1, -1, int> > >, Eigen::Product<Eigen::TriangularView<const Eigen::Matrix<double, -1, -1>, 5>, Eigen::Matrix<double, -1, 1>, 0>, 2, 7>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7:   required from ‘class Eigen::ProductImpl<Eigen::Transpose<Eigen::TranspositionsBase<Eigen::Transpositions<-1, -1, int> > >, Eigen::Product<Eigen::TriangularView<const Eigen::Matrix<double, -1, -1>, 5>, Eigen::Matrix<double, -1, 1>, 0>, 2, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product<Eigen::Transpose<Eigen::TranspositionsBase<Eigen::Transpositions<-1, -1, int> > >, Eigen::Product<Eigen::TriangularView<const Eigen::Matrix<double, -1, -1>, 5>, Eigen::Matrix<double, -1, 1>, 0>, 2>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/gaussian_dlm_obs_rng.hpp:46:76:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Transpose<const Eigen::Matrix<double, -1, -1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Transpose<const Eigen::Matrix<double, -1, -1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37:   required from ‘class Eigen::TransposeImpl<const Eigen::Matrix<double, -1, -1>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   required from ‘class Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/gaussian_dlm_obs_rng.hpp:135:41:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, 3>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34:   required from ‘class Eigen::MapBase<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Map.h:94:79:   required from ‘class Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/hmm_latent_rng.hpp:83:27:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, 3>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Transpose<Eigen::Matrix<double, -1, -1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Transpose<Eigen::Matrix<double, -1, -1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37:   required from ‘class Eigen::TransposeImpl<Eigen::Matrix<double, -1, -1>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   required from ‘class Eigen::Transpose<Eigen::Matrix<double, -1, -1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_cholesky_rng.hpp:49:68:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Product<Eigen::TriangularView<const Eigen::Matrix<double, -1, -1>, 1>, Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, 0>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Product<Eigen::TriangularView<const Eigen::Matrix<double, -1, -1>, 1>, Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Product<Eigen::TriangularView<const Eigen::Matrix<double, -1, -1>, 1>, Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7:   required from ‘class Eigen::internal::dense_product_base<Eigen::TriangularView<const Eigen::Matrix<double, -1, -1>, 1>, Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, 0, 8>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7:   required from ‘class Eigen::ProductImpl<Eigen::TriangularView<const Eigen::Matrix<double, -1, -1>, 1>, Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product<Eigen::TriangularView<const Eigen::Matrix<double, -1, -1>, 1>, Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_cholesky_rng.hpp:49:68:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7:   required from ‘class Eigen::internal::dense_product_base<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0, 8>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7:   required from ‘class Eigen::ProductImpl<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:42:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Transpose<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Transpose<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37:   required from ‘class Eigen::TransposeImpl<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   required from ‘class Eigen::Transpose<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:32:   required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0>; stan::require_eigen_t<T_desired>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/inv_wishart_rng.hpp:27:40:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7:   required from ‘class Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:38:28:   required from ‘struct Eigen::internal::traits<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/inv_wishart_rng.hpp:27:40:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/inv_wishart_rng.hpp:27:40:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_inverse_op<double>, const Eigen::ArrayWrapper<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_inverse_op<double>, const Eigen::ArrayWrapper<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_inverse_op<double>, const Eigen::ArrayWrapper<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_inverse_op<double>, const Eigen::ArrayWrapper<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp<Eigen::internal::scalar_inverse_op<double>, const Eigen::ArrayWrapper<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/matrix_normal_prec_rng.hpp:89:47:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_sqrt_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_inverse_op<double>, const Eigen::ArrayWrapper<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> > > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_sqrt_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_inverse_op<double>, const Eigen::ArrayWrapper<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_sqrt_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_inverse_op<double>, const Eigen::ArrayWrapper<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_sqrt_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_inverse_op<double>, const Eigen::ArrayWrapper<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> > >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp<Eigen::internal::scalar_sqrt_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_inverse_op<double>, const Eigen::ArrayWrapper<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/matrix_normal_prec_rng.hpp:89:54:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Matrix<double, -1, -1> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Matrix<double, -1, -1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Matrix<double, -1, -1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Solve.h:86:7:   required from ‘class Eigen::SolveImpl<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Matrix<double, -1, -1>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Solve.h:62:7:   required from ‘class Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Matrix<double, -1, -1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/matrix_normal_prec_rng.hpp:109:64:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Matrix<double, -1, -1> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Transpose<const Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Matrix<double, -1, -1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Transpose<const Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Matrix<double, -1, -1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37:   required from ‘class Eigen::TransposeImpl<const Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Matrix<double, -1, -1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/matrix_normal_prec_rng.hpp:108:51:   recursively required by substitution of ‘template<int Side, class Other> const Eigen::internal::triangular_solve_retval<Side, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Other> Eigen::TriangularViewImpl<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6, Eigen::Dense>::solve(const Eigen::MatrixBase<U>&) const [with int Side = <missing>; Other = <missing>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/matrix_normal_prec_rng.hpp:108:51:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 3>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Matrix<double, -1, -1, 1, -1, -1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Matrix<double, -1, -1, 1, -1, -1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<double, -1, -1, 1, -1, -1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/ForwardDeclarations.h:32:48:   required from ‘struct Eigen::internal::accessors_level<Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Transpose<const Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Matrix<double, -1, -1> > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Transpose<const Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Matrix<double, -1, -1> > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Transpose<const Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Matrix<double, -1, -1> > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Solve.h:86:7:   required from ‘class Eigen::SolveImpl<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Transpose<const Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Matrix<double, -1, -1> > >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Solve.h:62:7:   required from ‘class Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Transpose<const Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Matrix<double, -1, -1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/matrix_normal_prec_rng.hpp:110:32:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Transpose<const Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Matrix<double, -1, -1> > > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Transpose<const Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Matrix<double, -1, -1> > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Transpose<const Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Matrix<double, -1, -1> > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Solve.h:86:7:   required from ‘class Eigen::SolveImpl<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Transpose<const Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Matrix<double, -1, -1> > >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Solve.h:62:7:   required from ‘class Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Transpose<const Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Matrix<double, -1, -1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/matrix_normal_prec_rng.hpp:110:32:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Transpose<const Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Matrix<double, -1, -1> > > > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Transpose<const Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Transpose<const Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Matrix<double, -1, -1> > > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Transpose<const Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Transpose<const Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Matrix<double, -1, -1> > > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37:   required from ‘class Eigen::TransposeImpl<const Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Transpose<const Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Matrix<double, -1, -1> > > >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   required from ‘class Eigen::Transpose<const Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Transpose<const Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Matrix<double, -1, -1> > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/matrix_normal_prec_rng.hpp:110:43:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Product<Eigen::Transpose<Eigen::TranspositionsBase<Eigen::Transpositions<-1, -1, int> > >, Eigen::Transpose<const Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Transpose<const Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Matrix<double, -1, -1> > > > >, 2>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Product<Eigen::Transpose<Eigen::TranspositionsBase<Eigen::Transpositions<-1, -1, int> > >, Eigen::Transpose<const Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Transpose<const Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Matrix<double, -1, -1> > > > >, 2> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Product<Eigen::Transpose<Eigen::TranspositionsBase<Eigen::Transpositions<-1, -1, int> > >, Eigen::Transpose<const Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Transpose<const Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Matrix<double, -1, -1> > > > >, 2> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7:   required from ‘class Eigen::internal::dense_product_base<Eigen::Transpose<Eigen::TranspositionsBase<Eigen::Transpositions<-1, -1, int> > >, Eigen::Transpose<const Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Transpose<const Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Matrix<double, -1, -1> > > > >, 2, 8>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7:   required from ‘class Eigen::ProductImpl<Eigen::Transpose<Eigen::TranspositionsBase<Eigen::Transpositions<-1, -1, int> > >, Eigen::Transpose<const Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Transpose<const Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Matrix<double, -1, -1> > > > >, 2, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product<Eigen::Transpose<Eigen::TranspositionsBase<Eigen::Transpositions<-1, -1, int> > >, Eigen::Transpose<const Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Transpose<const Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Matrix<double, -1, -1> > > > >, 2>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/matrix_normal_prec_rng.hpp:111:51:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Product<Eigen::Product<Eigen::Transpose<Eigen::TranspositionsBase<Eigen::Transpositions<-1, -1, int> > >, Eigen::Transpose<const Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Transpose<const Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Matrix<double, -1, -1> > > > >, 2>, Eigen::Transpositions<-1, -1, int>, 2>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Product<Eigen::Product<Eigen::Transpose<Eigen::TranspositionsBase<Eigen::Transpositions<-1, -1, int> > >, Eigen::Transpose<const Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Transpose<const Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Matrix<double, -1, -1> > > > >, 2>, Eigen::Transpositions<-1, -1, int>, 2> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Product<Eigen::Product<Eigen::Transpose<Eigen::TranspositionsBase<Eigen::Transpositions<-1, -1, int> > >, Eigen::Transpose<const Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Transpose<const Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Matrix<double, -1, -1> > > > >, 2>, Eigen::Transpositions<-1, -1, int>, 2> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7:   required from ‘class Eigen::internal::dense_product_base<Eigen::Product<Eigen::Transpose<Eigen::TranspositionsBase<Eigen::Transpositions<-1, -1, int> > >, Eigen::Transpose<const Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Transpose<const Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Matrix<double, -1, -1> > > > >, 2>, Eigen::Transpositions<-1, -1, int>, 2, 8>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7:   required from ‘class Eigen::ProductImpl<Eigen::Product<Eigen::Transpose<Eigen::TranspositionsBase<Eigen::Transpositions<-1, -1, int> > >, Eigen::Transpose<const Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Transpose<const Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Matrix<double, -1, -1> > > > >, 2>, Eigen::Transpositions<-1, -1, int>, 2, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product<Eigen::Product<Eigen::Transpose<Eigen::TranspositionsBase<Eigen::Transpositions<-1, -1, int> > >, Eigen::Transpose<const Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Transpose<const Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 6>, Eigen::Matrix<double, -1, -1> > > > >, 2>, Eigen::Transpositions<-1, -1, int>, 2>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/matrix_normal_prec_rng.hpp:111:52:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<stan::math::apply_scalar_unary<stan::math::lgamma_fun, Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<int, int>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::Map<const Eigen::Array<int, -1, 1>, 0, Eigen::Stride<0, 0> > >, void>::apply(const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<int, int>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::Map<const Eigen::Array<int, -1, 1>, 0, Eigen::Stride<0, 0> > >&)::<lambda(auto:3&&)>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<int, int>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::Map<const Eigen::Array<int, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryOp<stan::math::apply_scalar_unary<stan::math::lgamma_fun, Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<int, int>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::Map<const Eigen::Array<int, -1, 1>, 0, Eigen::Stride<0, 0> > >, void>::apply(const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<int, int>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::Map<const Eigen::Array<int, -1, 1>, 0, Eigen::Stride<0, 0> > >&)::<lambda(auto:3&&)>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<int, int>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::Map<const Eigen::Array<int, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseUnaryOp<stan::math::apply_scalar_unary<stan::math::lgamma_fun, Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<int, int>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::Map<const Eigen::Array<int, -1, 1>, 0, Eigen::Stride<0, 0> > >, void>::apply(const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<int, int>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::Map<const Eigen::Array<int, -1, 1>, 0, Eigen::Stride<0, 0> > >&)::<lambda(auto:3&&)>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<int, int>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::Map<const Eigen::Array<int, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl<stan::math::apply_scalar_unary<stan::math::lgamma_fun, Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<int, int>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::Map<const Eigen::Array<int, -1, 1>, 0, Eigen::Stride<0, 0> > >, void>::apply(const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<int, int>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::Map<const Eigen::Array<int, -1, 1>, 0, Eigen::Stride<0, 0> > >&)::<lambda(auto:3&&)>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<int, int>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::Map<const Eigen::Array<int, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp<stan::math::apply_scalar_unary<stan::math::lgamma_fun, Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<int, int>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::Map<const Eigen::Array<int, -1, 1>, 0, Eigen::Stride<0, 0> > >, void>::apply(const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<int, int>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::Map<const Eigen::Array<int, -1, 1>, 0, Eigen::Stride<0, 0> > >&)::<lambda(auto:3&&)>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<int, int>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::Map<const Eigen::Array<int, -1, 1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:62:23:   required from ‘static auto stan::math::apply_scalar_unary<F, T, typename std::enable_if<stan::is_eigen<typename std::decay<_Tp2>::type>::value, void>::type>::apply(const T&) [with F = stan::math::lgamma_fun; T = Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<int, int>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::Map<const Eigen::Array<int, -1, 1>, 0, Eigen::Stride<0, 0> > >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:72:38:   required from ‘struct stan::math::apply_scalar_unary<stan::math::lgamma_fun, Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<int, int>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::Map<const Eigen::Array<int, -1, 1>, 0, Eigen::Stride<0, 0> > >, void>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lgamma.hpp:120:50:   required from ‘auto stan::math::lgamma(const T&) [with T = Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<int, int>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::Map<const Eigen::Array<int, -1, 1>, 0, Eigen::Stride<0, 0> > >; stan::require_not_var_matrix_t<Container>* <anonymous> = 0; stan::require_not_nonscalar_prim_or_rev_kernel_expression_t<Container>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/multinomial_logit_lpmf.hpp:39:44:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/dump.hpp: In member function ‘virtual std::vector<std::complex<double> > stan::io::dump::vals_c(const std::string&) const’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/dump.hpp:694:52: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  694 |       for (comp_iter = 0, real_iter = 0; real_iter < val_r->second.first.size();
      |                                          ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/dump.hpp:707:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  707 |              real_iter < val_i->second.first.size();
      |              ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 3>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34:   required from ‘class Eigen::MapBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7:   required from ‘class Eigen::internal::BlockImpl_dense<Eigen::Matrix<double, -1, -1>, -1, -1, false, true>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   required from ‘class Eigen::BlockImpl<Eigen::Matrix<double, -1, -1>, -1, -1, false, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81:   required from ‘class Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cholesky_decompose.hpp:102:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   56 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >, 2>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37:   required from ‘class Eigen::TransposeImpl<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   required from ‘class Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cholesky_decompose.hpp:111:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Diagonal<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 0>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Diagonal<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 0>, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Diagonal<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 0>, 3>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Diagonal<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Diagonal<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Diagonal.h:63:53:   required from ‘class Eigen::Diagonal<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cholesky_decompose.hpp:116:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Ref<Eigen::Matrix<double, -1, -1>, 0, Eigen::OuterStride<> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Ref<Eigen::Matrix<double, -1, -1>, 0, Eigen::OuterStride<> >, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Ref<Eigen::Matrix<double, -1, -1>, 0, Eigen::OuterStride<> >, 3>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Ref<Eigen::Matrix<double, -1, -1>, 0, Eigen::OuterStride<> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Ref<Eigen::Matrix<double, -1, -1>, 0, Eigen::OuterStride<> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Ref<Eigen::Matrix<double, -1, -1>, 0, Eigen::OuterStride<> >, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34:   required from ‘class Eigen::MapBase<Eigen::Ref<Eigen::Matrix<double, -1, -1>, 0, Eigen::OuterStride<> >, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Ref.h:59:34:   required from ‘class Eigen::RefBase<Eigen::Ref<Eigen::Matrix<double, -1, -1>, 0, Eigen::OuterStride<> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Ref.h:281:76:   required from ‘class Eigen::Ref<Eigen::Matrix<double, -1, -1>, 0, Eigen::OuterStride<> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:76:42:   required from ‘class Eigen::LLT<Eigen::Ref<Eigen::Matrix<double, -1, -1>, 0, Eigen::OuterStride<> >, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cholesky_decompose.hpp:142:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 3>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34:   required from ‘class Eigen::MapBase<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Map.h:94:79:   required from ‘class Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:13:7:   required from ‘class stan::math::arena_matrix<Eigen::Matrix<double, -1, -1>, void>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cholesky_decompose.hpp:144:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1, -1, false>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1, -1, false>, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1, -1, false>, 3>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Block<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1, -1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Block<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1, -1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Block<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1, -1, false>, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34:   required from ‘class Eigen::MapBase<Eigen::Block<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1, -1, false>, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7:   required from ‘class Eigen::internal::BlockImpl_dense<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1, -1, false, true>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   required from ‘class Eigen::BlockImpl<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1, -1, false, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81:   required from ‘class Eigen::Block<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1, -1, false>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cholesky_factor_constrain.hpp:42:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 3>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37:   required from ‘class Eigen::TransposeImpl<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   required from ‘class Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply_lower_tri_self_transpose.hpp:28:0:   required from ‘auto stan::math::multiply_lower_tri_self_transpose(const T&) [with T = var_value<Eigen::Matrix<double, -1, -1> >; stan::require_rev_matrix_t<T>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cov_matrix_constrain.hpp:59:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Product<Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Product<Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Product<Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7:   required from ‘class Eigen::internal::dense_product_base<Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0, 8>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7:   required from ‘class Eigen::ProductImpl<Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product<Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply_lower_tri_self_transpose.hpp:28:0:   required from ‘auto stan::math::multiply_lower_tri_self_transpose(const T&) [with T = var_value<Eigen::Matrix<double, -1, -1> >; stan::require_rev_matrix_t<T>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cov_matrix_constrain.hpp:59:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply_lower_tri_self_transpose.hpp:31:0:   required from ‘auto stan::math::multiply_lower_tri_self_transpose(const T&) [with T = var_value<Eigen::Matrix<double, -1, -1> >; stan::require_rev_matrix_t<T>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cov_matrix_constrain.hpp:59:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, 0>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7:   required from ‘class Eigen::internal::dense_product_base<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, 0, 8>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7:   required from ‘class Eigen::ProductImpl<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply_lower_tri_self_transpose.hpp:32:0:   required from ‘auto stan::math::multiply_lower_tri_self_transpose(const T&) [with T = var_value<Eigen::Matrix<double, -1, -1> >; stan::require_rev_matrix_t<T>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cov_matrix_constrain.hpp:59:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, const Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, const Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseUnaryOp<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, const Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, const Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, const Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/gp_exp_quad_cov.hpp:94:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, const Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, const Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseUnaryOp<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, const Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, const Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, const Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/gp_exp_quad_cov.hpp:94:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<const Eigen::CwiseUnaryOp<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, const Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::ArrayWrapper<const Eigen::CwiseUnaryOp<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, const Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::ArrayWrapper<const Eigen::CwiseUnaryOp<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, const Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7:   required from ‘class Eigen::ArrayWrapper<const Eigen::CwiseUnaryOp<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, const Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/gp_exp_quad_cov.hpp:94:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<const Eigen::CwiseUnaryOp<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, const Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::ArrayWrapper<const Eigen::CwiseUnaryOp<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, const Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::ArrayWrapper<const Eigen::CwiseUnaryOp<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, const Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7:   required from ‘class Eigen::ArrayWrapper<const Eigen::CwiseUnaryOp<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, const Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/gp_exp_quad_cov.hpp:94:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<const Eigen::CwiseUnaryOp<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, const Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::ArrayWrapper<const Eigen::CwiseUnaryOp<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, const Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<const Eigen::CwiseUnaryOp<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, const Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::ArrayWrapper<const Eigen::CwiseUnaryOp<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, const Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<const Eigen::CwiseUnaryOp<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, const Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::ArrayWrapper<const Eigen::CwiseUnaryOp<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, const Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<const Eigen::CwiseUnaryOp<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, const Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::ArrayWrapper<const Eigen::CwiseUnaryOp<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, const Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<const Eigen::CwiseUnaryOp<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, const Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::ArrayWrapper<const Eigen::CwiseUnaryOp<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, const Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/gp_exp_quad_cov.hpp:94:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase<Eigen::SparseMatrix<double, 1> >’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7:   required from ‘class Eigen::SparseCompressedBase<Eigen::SparseMatrix<double, 1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/is_base_pointer_convertible.hpp:29:17:   recursively required by substitution of ‘template<class OtherDerived> static std::true_type stan::is_base_pointer_convertible<Eigen::EigenBase, Eigen::SparseMatrix<double, 1> >::f(const Eigen::EigenBase<Derived>*) [with OtherDerived = <missing>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/is_base_pointer_convertible.hpp:29:17:   required from ‘struct stan::is_base_pointer_convertible<Eigen::EigenBase, Eigen::SparseMatrix<double, 1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/is_eigen.hpp:20:8:   required from ‘struct stan::is_eigen<Eigen::SparseMatrix<double, 1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/var.hpp:301:19:   required by substitution of ‘template<class T> class stan::math::var_value<T, typename std::enable_if<std::integral_constant<bool, ((stan::is_eigen<T>::value || stan::is_kernel_expression_and_not_scalar<T>::value) && std::is_floating_point<typename stan::value_type<T>::type>::value)>::value, void>::type> [with T = Eigen::SparseMatrix<double, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:120:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   47 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase<Eigen::Map<Eigen::SparseMatrix<double, 1>, 0, Eigen::Stride<0, 0> > >’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7:   required from ‘class Eigen::SparseCompressedBase<Eigen::Map<Eigen::SparseMatrix<double, 1>, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMap.h:50:7:   required from ‘class Eigen::SparseMapBase<Eigen::Map<Eigen::SparseMatrix<double, 1>, 0, Eigen::Stride<0, 0> >, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMap.h:148:7:   required from ‘class Eigen::SparseMapBase<Eigen::Map<Eigen::SparseMatrix<double, 1>, 0, Eigen::Stride<0, 0> >, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMap.h:222:7:   required from ‘class Eigen::Map<Eigen::SparseMatrix<double, 1>, 0, Eigen::Stride<0, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:129:7:   required from ‘class stan::math::arena_matrix<Eigen::SparseMatrix<double, 1>, void>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/vari.hpp:814:9:   required from ‘class stan::math::vari_value<Eigen::SparseMatrix<double, 1>, void>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/var.hpp:419:57:   required from ‘const auto& stan::math::var_value<T, typename std::enable_if<std::integral_constant<bool, ((stan::is_eigen<T>::value || stan::is_kernel_expression_and_not_scalar<T>::value) && std::is_floating_point<typename stan::value_type<T>::type>::value)>::value, void>::type>::val() const [with T = Eigen::SparseMatrix<double, 1>; typename std::enable_if<std::integral_constant<bool, ((stan::is_eigen<T>::value || stan::is_kernel_expression_and_not_scalar<T>::value) && std::is_floating_point<typename stan::value_type<T>::type>::value)>::value, void>::type = void; typename stan::value_type<T>::type = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/csr_matrix_times_vector.hpp:120:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, -1>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, -1>, 2>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, -1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, -1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Diagonal.h:63:53:   required from ‘class Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, -1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:97:21:   required from ‘class Eigen::Tridiagonalization<Eigen::Matrix<double, -1, -1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:111:62:   required from ‘class Eigen::SelfAdjointEigenSolver<Eigen::Matrix<double, -1, -1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/eigendecompose_sym.hpp:40:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   56 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
In file included from /home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun.hpp:75,
                 from /home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev.hpp:10,
                 from /home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
                 from /home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
                 from /home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8,
                 from /home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:49:
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/generalized_inverse.hpp: In function ‘auto stan::math::generalized_inverse(const VarMat&)’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/generalized_inverse.hpp:67: note: ‘-Wmisleading-indentation’ is disabled from this point onwards, since column-tracking was disabled due to the size of the code/headers
   67 |   if (G.size() == 0)
      | 
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/generalized_inverse.hpp:67: note: adding ‘-flarge-source-files’ will allow for more column-tracking support, at the expense of compilation time and memory
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Matrix<stan::math::var_value<double>, -1, 1> >::adj_Op, Eigen::Matrix<stan::math::var_value<double>, -1, 1> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Matrix<stan::math::var_value<double>, -1, 1> >::adj_Op, Eigen::Matrix<stan::math::var_value<double>, -1, 1> >, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Matrix<stan::math::var_value<double>, -1, 1> >::adj_Op, Eigen::Matrix<stan::math::var_value<double>, -1, 1> >, 3>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Matrix<stan::math::var_value<double>, -1, 1> >::adj_Op, Eigen::Matrix<stan::math::var_value<double>, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Matrix<stan::math::var_value<double>, -1, 1> >::adj_Op, Eigen::Matrix<stan::math::var_value<double>, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:103:7:   required from ‘class Eigen::CwiseUnaryViewImpl<Eigen::MatrixBase<Eigen::Matrix<stan::math::var_value<double>, -1, 1> >::adj_Op, Eigen::Matrix<stan::math::var_value<double>, -1, 1>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:58:7:   required from ‘class Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Matrix<stan::math::var_value<double>, -1, 1> >::adj_Op, Eigen::Matrix<stan::math::var_value<double>, -1, 1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/grad.hpp:27:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   56 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<const Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<const Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> >, 2>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::ArrayWrapper<const Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::ArrayWrapper<const Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7:   required from ‘class Eigen::ArrayWrapper<const Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/log.hpp:66:51:   required from ‘stan::math::log<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> >(const Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0>&)::<lambda(const auto:169&)> [with auto:169 = Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:47:25:   required from ‘static auto stan::math::apply_vector_unary<T, typename std::enable_if<stan::is_eigen<typename std::decay<_Tp>::type>::value, void>::type>::apply(const T&, const F&) [with F = stan::math::log<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> >(const Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0>&)::<lambda(const auto:169&)>; T2 = Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0>; stan::require_t<stan::is_eigen_matrix_base<typename stan::plain_type<T2, void>::type> >* <anonymous> = 0; T = Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/log.hpp:65:46:   required from ‘auto stan::math::log(const Container&) [with Container = Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0>; stan::require_container_st<std::is_arithmetic, Container>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/log_determinant_spd.hpp:49:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_log_op<double>, const Eigen::ArrayWrapper<const Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_log_op<double>, const Eigen::ArrayWrapper<const Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_log_op<double>, const Eigen::ArrayWrapper<const Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_log_op<double>, const Eigen::ArrayWrapper<const Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp<Eigen::internal::scalar_log_op<double>, const Eigen::ArrayWrapper<const Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/log.hpp:66:51:   required from ‘stan::math::log<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> >(const Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0>&)::<lambda(const auto:169&)> [with auto:169 = Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:47:25:   required from ‘static auto stan::math::apply_vector_unary<T, typename std::enable_if<stan::is_eigen<typename std::decay<_Tp>::type>::value, void>::type>::apply(const T&, const F&) [with F = stan::math::log<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> >(const Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0>&)::<lambda(const auto:169&)>; T2 = Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0>; stan::require_t<stan::is_eigen_matrix_base<typename stan::plain_type<T2, void>::type> >* <anonymous> = 0; T = Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/log.hpp:65:46:   required from ‘auto stan::math::log(const Container&) [with Container = Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0>; stan::require_container_st<std::is_arithmetic, Container>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/log_determinant_spd.hpp:49:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::MatrixWrapper<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_log_op<double>, const Eigen::ArrayWrapper<const Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> > > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::MatrixWrapper<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_log_op<double>, const Eigen::ArrayWrapper<const Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::MatrixWrapper<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_log_op<double>, const Eigen::ArrayWrapper<const Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:140:7:   required from ‘class Eigen::MatrixWrapper<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_log_op<double>, const Eigen::ArrayWrapper<const Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:46:70:   required from ‘stan::math::apply_vector_unary<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0>, void>::apply<stan::math::log<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> >(const Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0>&)::<lambda(const auto:169&)> >(const Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0>&, const stan::math::log<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> >(const Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0>&)::<lambda(const auto:169&)>&)::<lambda(const auto:6&)> [with auto:6 = Eigen::CwiseUnaryOp<Eigen::internal::scalar_log_op<double>, const Eigen::ArrayWrapper<const Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> > >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/holder.hpp:370:41:   required by substitution of ‘template<class F, class ... Args, stan::require_plain_type_t<decltype (declval<F>()((declval<Args&>)()...))>* <anonymous> > auto stan::math::make_holder(const F&, Args&& ...) [with F = stan::math::apply_vector_unary<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0>, void>::apply<stan::math::log<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> >(const Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0>&)::<lambda(const auto:169&)> >(const Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0>&, const stan::math::log<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> >(const Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0>&)::<lambda(const auto:169&)>&)::<lambda(const auto:6&)>; Args = {Eigen::CwiseUnaryOp<Eigen::internal::scalar_log_op<double>, const Eigen::ArrayWrapper<const Eigen::Diagonal<const Eigen::Matrix<double, -1, -1, 0, -1, -1>, 0> > >}; stan::require_plain_type_t<decltype (declval<F>()((declval<Args&>)()...))>* <anonymous> = <missing>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:46:23:   required from ‘static auto stan::math::apply_vector_unary<T, typename std::enable_if<stan::is_eigen<typename std::decay<_Tp>::type>::value, void>::type>::apply(const T&, const F&) [with F = stan::math::log<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> >(const Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0>&)::<lambda(const auto:169&)>; T2 = Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0>; stan::require_t<stan::is_eigen_matrix_base<typename stan::plain_type<T2, void>::type> >* <anonymous> = 0; T = Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/log.hpp:65:46:   required from ‘auto stan::math::log(const Container&) [with Container = Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0>; stan::require_container_st<std::is_arithmetic, Container>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/log_determinant_spd.hpp:49:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::Stride<0, 0> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::Stride<0, 0> >, 3>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Map<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Map<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::Stride<0, 0> >, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34:   required from ‘class Eigen::MapBase<Eigen::Map<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Map.h:94:79:   required from ‘class Eigen::Map<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::Stride<0, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:13:7:   required from ‘class stan::math::arena_matrix<Eigen::Matrix<double, -1, -1, 1, -1, -1>, void>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/log_determinant_spd.hpp:51:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, 3>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7:   required from ‘class Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/log_softmax.hpp:73:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7:   required from ‘class Eigen::internal::dense_product_base<Eigen::Matrix<double, -1, -1>, Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0, 8>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7:   required from ‘class Eigen::ProductImpl<Eigen::Matrix<double, -1, -1>, Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/matrix_power.hpp:63:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 2>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37:   required from ‘class Eigen::TransposeImpl<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   required from ‘class Eigen::Transpose<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/matrix_power.hpp:64:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, -1> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, -1> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, -1> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, -1> > >, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, -1> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, -1> > >, 3>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, -1> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, -1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, -1> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, -1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:103:7:   required from ‘class Eigen::CwiseUnaryViewImpl<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, -1> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, -1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:58:7:   required from ‘class Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, -1> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, -1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/mdivide_left_spd.hpp:67:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/mdivide_left_tri.hpp:85:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Transpose<Eigen::Matrix<double, -1, -1> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Transpose<Eigen::Matrix<double, -1, -1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Transpose<Eigen::Matrix<double, -1, -1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Transpose<Eigen::Matrix<double, -1, -1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/quad_form.hpp:25:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, 1, true>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, 1, true>, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, 1, true>, 3>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Block<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, 1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Block<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, 1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Block<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, 1, true>, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34:   required from ‘class Eigen::MapBase<Eigen::Block<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, 1, true>, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7:   required from ‘class Eigen::internal::BlockImpl_dense<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, 1, true, true>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   required from ‘class Eigen::BlockImpl<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, 1, true, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81:   required from ‘class Eigen::Block<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, 1, true>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/read_corr_L.hpp:55:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> >, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> >, 3>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> >, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34:   required from ‘class Eigen::MapBase<Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> >, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Map.h:94:79:   required from ‘class Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:13:7:   required from ‘class stan::math::arena_matrix<Eigen::Array<double, -1, 1>, void>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/read_corr_L.hpp:56:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false>, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false>, 3>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Block<Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::Block<Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Block<Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false>, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34:   required from ‘class Eigen::MapBase<Eigen::Block<Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false>, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7:   required from ‘class Eigen::internal::BlockImpl_dense<Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false, true>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   required from ‘class Eigen::BlockImpl<Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81:   required from ‘class Eigen::Block<Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/VectorBlock.h:56:47:   required from ‘class Eigen::VectorBlock<Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/read_corr_L.hpp:63:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Array<double, -1, 1>, -1, 1, false>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Array<double, -1, 1>, -1, 1, false>, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Array<double, -1, 1>, -1, 1, false>, 3>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Block<Eigen::Array<double, -1, 1>, -1, 1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::Block<Eigen::Array<double, -1, 1>, -1, 1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Block<Eigen::Array<double, -1, 1>, -1, 1, false>, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34:   required from ‘class Eigen::MapBase<Eigen::Block<Eigen::Array<double, -1, 1>, -1, 1, false>, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7:   required from ‘class Eigen::internal::BlockImpl_dense<Eigen::Array<double, -1, 1>, -1, 1, false, true>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   required from ‘class Eigen::BlockImpl<Eigen::Array<double, -1, 1>, -1, 1, false, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81:   required from ‘class Eigen::Block<Eigen::Array<double, -1, 1>, -1, 1, false>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/VectorBlock.h:56:47:   required from ‘class Eigen::VectorBlock<Eigen::Array<double, -1, 1>, -1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/read_corr_L.hpp:86:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Block<Eigen::Array<double, -1, 1>, -1, 1, false> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Block<Eigen::Array<double, -1, 1>, -1, 1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Block<Eigen::Array<double, -1, 1>, -1, 1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Block<Eigen::Array<double, -1, 1>, -1, 1, false>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Block<Eigen::Array<double, -1, 1>, -1, 1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/read_corr_L.hpp:86:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 3>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::ArrayWrapper<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::ArrayWrapper<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7:   required from ‘class Eigen::ArrayWrapper<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/read_corr_L.hpp:90:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::ArrayWrapper<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::ArrayWrapper<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true>, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::ArrayWrapper<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true>, 3>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Block<Eigen::ArrayWrapper<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::Block<Eigen::ArrayWrapper<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Block<Eigen::ArrayWrapper<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true>, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34:   required from ‘class Eigen::MapBase<Eigen::Block<Eigen::ArrayWrapper<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true>, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7:   required from ‘class Eigen::internal::BlockImpl_dense<Eigen::ArrayWrapper<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true, true>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   required from ‘class Eigen::BlockImpl<Eigen::ArrayWrapper<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81:   required from ‘class Eigen::Block<Eigen::ArrayWrapper<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/read_corr_L.hpp:90:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Block<Eigen::ArrayWrapper<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true>, -1, 1, false>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Block<Eigen::ArrayWrapper<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true>, -1, 1, false>, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Block<Eigen::ArrayWrapper<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true>, -1, 1, false>, 3>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Block<Eigen::Block<Eigen::ArrayWrapper<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true>, -1, 1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::Block<Eigen::Block<Eigen::ArrayWrapper<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true>, -1, 1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Block<Eigen::Block<Eigen::ArrayWrapper<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true>, -1, 1, false>, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34:   required from ‘class Eigen::MapBase<Eigen::Block<Eigen::Block<Eigen::ArrayWrapper<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true>, -1, 1, false>, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7:   required from ‘class Eigen::internal::BlockImpl_dense<Eigen::Block<Eigen::ArrayWrapper<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true>, -1, 1, false, true>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   required from ‘class Eigen::BlockImpl<Eigen::Block<Eigen::ArrayWrapper<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true>, -1, 1, false, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81:   required from ‘class Eigen::Block<Eigen::Block<Eigen::ArrayWrapper<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true>, -1, 1, false>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/VectorBlock.h:56:47:   required from ‘class Eigen::VectorBlock<Eigen::Block<Eigen::ArrayWrapper<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true>, -1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/read_corr_L.hpp:90:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_sqrt_op<double>, const Eigen::Block<Eigen::Array<double, -1, 1>, -1, 1, false> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_sqrt_op<double>, const Eigen::Block<Eigen::Array<double, -1, 1>, -1, 1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_sqrt_op<double>, const Eigen::Block<Eigen::Array<double, -1, 1>, -1, 1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_sqrt_op<double>, const Eigen::Block<Eigen::Array<double, -1, 1>, -1, 1, false>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp<Eigen::internal::scalar_sqrt_op<double>, const Eigen::Block<Eigen::Array<double, -1, 1>, -1, 1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/read_corr_L.hpp:90:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/read_cov_matrix.hpp:56:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Matrix<int, -1, 1> >, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Matrix<int, -1, 1> >, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Matrix<int, -1, 1> >, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Matrix<int, -1, 1> >, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Matrix<int, -1, 1> >, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/rows_dot_self.hpp:41:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Diagonal<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 0>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Diagonal<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 0>, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Diagonal<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 0>, 3>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Diagonal<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Diagonal<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Diagonal.h:63:53:   required from ‘class Eigen::Diagonal<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/svd.hpp:56:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Transpose<Eigen::Matrix<double, -1, -1> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Transpose<Eigen::Matrix<double, -1, -1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Transpose<Eigen::Matrix<double, -1, -1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Transpose<Eigen::Matrix<double, -1, -1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/svd.hpp:69:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Transpose<Eigen::Matrix<double, -1, -1> > > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::ArrayWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Transpose<Eigen::Matrix<double, -1, -1> > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::ArrayWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Transpose<Eigen::Matrix<double, -1, -1> > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7:   required from ‘class Eigen::ArrayWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Transpose<Eigen::Matrix<double, -1, -1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/svd.hpp:69:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::ArrayWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Transpose<Eigen::Matrix<double, -1, -1> > > > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::ArrayWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Transpose<Eigen::Matrix<double, -1, -1> > > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::ArrayWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Transpose<Eigen::Matrix<double, -1, -1> > > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::ArrayWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Transpose<Eigen::Matrix<double, -1, -1> > > >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::ArrayWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Transpose<Eigen::Matrix<double, -1, -1> > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/svd.hpp:70:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/svd_V.hpp:61:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::ArrayWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Transpose<Eigen::Matrix<double, -1, -1> > > > > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::ArrayWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Transpose<Eigen::Matrix<double, -1, -1> > > > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::ArrayWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Transpose<Eigen::Matrix<double, -1, -1> > > > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:140:7:   required from ‘class Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::ArrayWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Transpose<Eigen::Matrix<double, -1, -1> > > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/svd_V.hpp:61:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_inverse_op<double>, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_inverse_op<double>, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_inverse_op<double>, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_inverse_op<double>, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp<Eigen::internal::scalar_inverse_op<double>, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DiagonalMatrix.h:278:47:   required from ‘struct Eigen::internal::traits<Eigen::DiagonalWrapper<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_inverse_op<double>, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/EigenBase.h:42:59:   required from ‘struct Eigen::EigenBase<Eigen::DiagonalWrapper<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_inverse_op<double>, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DiagonalMatrix.h:18:7:   required from ‘class Eigen::DiagonalBase<Eigen::DiagonalWrapper<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_inverse_op<double>, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DiagonalMatrix.h:293:7:   required from ‘class Eigen::DiagonalWrapper<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_inverse_op<double>, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/svd_V.hpp:63:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >, 3>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:103:7:   required from ‘class Eigen::CwiseUnaryViewImpl<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:58:7:   required from ‘class Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/squared_distance.hpp:79:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >, const Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >, const Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >, const Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >, const Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >, const Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/squared_distance.hpp:79:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >, const Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > > > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >, const Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >, const Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >, const Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > > >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >, const Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/squared_distance.hpp:79:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >, 3>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:103:7:   required from ‘class Eigen::CwiseUnaryViewImpl<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:58:7:   required from ‘class Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/squared_distance.hpp:80:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/squared_distance.hpp:111:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::vari_value<double>*, -1, 1> > >, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/squared_distance.hpp:111:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<const Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map<const Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<const Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map<const Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >, 2>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<const Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map<const Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<const Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map<const Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:103:7:   required from ‘class Eigen::CwiseUnaryViewImpl<Eigen::MatrixBase<Eigen::Map<const Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map<const Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:58:7:   required from ‘class Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<const Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map<const Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/variance.hpp:23:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/variance.hpp:25:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/variance.hpp:27:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/variance.hpp:27:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<stan::math::value_of<const Eigen::Matrix<var_value<double>, -1, 1>&>(const Eigen::Matrix<var_value<double>, -1, 1>&)::<lambda(auto:11&)>::<lambda(const auto:12&)>, const Eigen::Matrix<stan::math::var_value<double>, -1, 1> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryOp<stan::math::value_of<const Eigen::Matrix<var_value<double>, -1, 1>&>(const Eigen::Matrix<var_value<double>, -1, 1>&)::<lambda(auto:11&)>::<lambda(const auto:12&)>, const Eigen::Matrix<stan::math::var_value<double>, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseUnaryOp<stan::math::value_of<const Eigen::Matrix<var_value<double>, -1, 1>&>(const Eigen::Matrix<var_value<double>, -1, 1>&)::<lambda(auto:11&)>::<lambda(const auto:12&)>, const Eigen::Matrix<stan::math::var_value<double>, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl<stan::math::value_of<const Eigen::Matrix<var_value<double>, -1, 1>&>(const Eigen::Matrix<var_value<double>, -1, 1>&)::<lambda(auto:11&)>::<lambda(const auto:12&)>, const Eigen::Matrix<stan::math::var_value<double>, -1, 1>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp<stan::math::value_of<const Eigen::Matrix<var_value<double>, -1, 1>&>(const Eigen::Matrix<var_value<double>, -1, 1>&)::<lambda(auto:11&)>::<lambda(const auto:12&)>, const Eigen::Matrix<stan::math::var_value<double>, -1, 1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/value_of.hpp:75:75:   required from ‘stan::math::value_of<const Eigen::Matrix<var_value<double>, -1, 1>&>(const Eigen::Matrix<var_value<double>, -1, 1>&)::<lambda(auto:11&)> [with auto:11 = const Eigen::Matrix<stan::math::var_value<double>, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/holder.hpp:370:41:   required by substitution of ‘template<class F, class ... Args, stan::require_plain_type_t<decltype (declval<F>()((declval<Args&>)()...))>* <anonymous> > auto stan::math::make_holder(const F&, Args&& ...) [with F = stan::math::value_of<const Eigen::Matrix<var_value<double>, -1, 1>&>(const Eigen::Matrix<var_value<double>, -1, 1>&)::<lambda(auto:11&)>; Args = {const Eigen::Matrix<stan::math::var_value<double, void>, -1, 1, 0, -1, 1>&}; stan::require_plain_type_t<decltype (declval<F>()((declval<Args&>)()...))>* <anonymous> = <missing>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/value_of.hpp:73:21:   required from ‘auto stan::math::value_of(EigMat&&) [with EigMat = const Eigen::Matrix<var_value<double>, -1, 1>&; stan::require_eigen_dense_base_t<EigMat>* <anonymous> = 0; stan::require_not_st_arithmetic<T>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/functor/algebra_solver_fp.hpp:101:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, -1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, -1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, -1>, 0, Eigen::Stride<0, 0> > >, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, -1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, -1>, 0, Eigen::Stride<0, 0> > >, 3>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, -1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, -1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, -1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, -1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:103:7:   required from ‘class Eigen::CwiseUnaryViewImpl<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, -1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:58:7:   required from ‘class Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, -1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, -1>, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/functor/solve_powell.hpp:369:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Solve<Eigen::PartialPivLU<Eigen::Matrix<double, -1, -1, 1, -1, -1> >, Eigen::Matrix<double, -1, -1> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Solve<Eigen::PartialPivLU<Eigen::Matrix<double, -1, -1, 1, -1, -1> >, Eigen::Matrix<double, -1, -1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Solve<Eigen::PartialPivLU<Eigen::Matrix<double, -1, -1, 1, -1, -1> >, Eigen::Matrix<double, -1, -1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Solve.h:86:7:   required from ‘class Eigen::SolveImpl<Eigen::PartialPivLU<Eigen::Matrix<double, -1, -1, 1, -1, -1> >, Eigen::Matrix<double, -1, -1>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Solve.h:62:7:   required from ‘class Eigen::Solve<Eigen::PartialPivLU<Eigen::Matrix<double, -1, -1, 1, -1, -1> >, Eigen::Matrix<double, -1, -1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/functor/solve_powell.hpp:369:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
In file included from /home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/initialize.hpp:7,
                 from /home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10:
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/random_var_context.hpp: In member function ‘virtual std::vector<std::complex<double> > stan::io::random_var_context::vals_c(const std::string&) const’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/random_var_context.hpp:111: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  111 |       for (comp_iter = 0, real_iter = 0; real_iter < val_r.size();
      | 
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_identity_op<double>, Eigen::Matrix<double, -1, -1> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_identity_op<double>, Eigen::Matrix<double, -1, -1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_identity_op<double>, Eigen::Matrix<double, -1, -1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7:   required from ‘class Eigen::CwiseNullaryOp<Eigen::internal::scalar_identity_op<double>, Eigen::Matrix<double, -1, -1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/variational/families/normal_fullrank.hpp:99:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   56 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_square_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_square_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_square_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_square_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp<Eigen::internal::scalar_square_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/variational/families/normal_fullrank.hpp:182:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_square_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, -1> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_square_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, -1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_square_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, -1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_square_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, -1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp<Eigen::internal::scalar_square_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, -1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/variational/families/normal_fullrank.hpp:183:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_sqrt_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_sqrt_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_sqrt_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_sqrt_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp<Eigen::internal::scalar_sqrt_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/variational/families/normal_fullrank.hpp:197:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_sqrt_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, -1> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_sqrt_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, -1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_sqrt_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, -1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_sqrt_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, -1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp<Eigen::internal::scalar_sqrt_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, -1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/variational/families/normal_fullrank.hpp:198:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<Eigen::Matrix<double, -1, -1> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<Eigen::Matrix<double, -1, -1> >, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<Eigen::Matrix<double, -1, -1> >, 3>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::ArrayWrapper<Eigen::Matrix<double, -1, -1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::ArrayWrapper<Eigen::Matrix<double, -1, -1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7:   required from ‘class Eigen::ArrayWrapper<Eigen::Matrix<double, -1, -1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/variational/families/normal_fullrank.hpp:263:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 0>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7:   required from ‘class Eigen::internal::dense_product_base<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 0, 7>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7:   required from ‘class Eigen::ProductImpl<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/variational/families/normal_fullrank.hpp:351:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 0>, const Eigen::Matrix<double, -1, 1> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 0>, const Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 0>, const Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 0>, const Eigen::Matrix<double, -1, 1>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 0>, const Eigen::Matrix<double, -1, 1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/variational/families/normal_fullrank.hpp:351:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_inverse_op<double>, const Eigen::ArrayWrapper<const Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_inverse_op<double>, const Eigen::ArrayWrapper<const Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_inverse_op<double>, const Eigen::ArrayWrapper<const Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_inverse_op<double>, const Eigen::ArrayWrapper<const Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp<Eigen::internal::scalar_inverse_op<double>, const Eigen::ArrayWrapper<const Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/variational/families/normal_fullrank.hpp:459:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_exp_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/variational/families/normal_meanfield.hpp:314:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/variational/families/normal_meanfield.hpp:314:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/variational/families/normal_meanfield.hpp:314:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/variational/families/normal_meanfield.hpp:370:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Product<Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, Eigen::Matrix<double, -1, 1>, 0>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Product<Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, Eigen::Matrix<double, -1, 1>, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Product<Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, Eigen::Matrix<double, -1, 1>, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7:   required from ‘class Eigen::internal::dense_product_base<Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, Eigen::Matrix<double, -1, 1>, 0, 7>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7:   required from ‘class Eigen::ProductImpl<Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, Eigen::Matrix<double, -1, 1>, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product<Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, Eigen::Matrix<double, -1, 1>, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:22:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7:   required from ‘class Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:38:28:   required from ‘struct Eigen::internal::traits<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7:   required from ‘class Eigen::internal::dense_product_base<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0, 7>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7:   required from ‘class Eigen::ProductImpl<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Product<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>, Eigen::Matrix<double, -1, 1>, 0>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Product<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>, Eigen::Matrix<double, -1, 1>, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Product<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>, Eigen::Matrix<double, -1, 1>, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:126:7:   required from ‘class Eigen::internal::dense_product_base<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>, Eigen::Matrix<double, -1, 1>, 0, 6>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7:   required from ‘class Eigen::ProductImpl<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>, Eigen::Matrix<double, -1, 1>, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>, Eigen::Matrix<double, -1, 1>, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet<double, 1>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:179:81:   required from ‘class Eigen::DenseBase<Eigen::Product<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>, Eigen::Matrix<double, -1, 1>, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Product<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>, Eigen::Matrix<double, -1, 1>, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:126:7:   required from ‘class Eigen::internal::dense_product_base<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>, Eigen::Matrix<double, -1, 1>, 0, 6>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7:   required from ‘class Eigen::ProductImpl<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>, Eigen::Matrix<double, -1, 1>, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>, Eigen::Matrix<double, -1, 1>, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
  190 |          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
      |                                       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
  190 |          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
      |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
  208 |   typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
      |                                                                                        ^~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Map<const Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Map<const Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 2>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Map<const Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Map<const Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Map<const Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Map.h:94:79:   required from ‘class Eigen::Map<const Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/to_matrix.hpp:133:17:   required from ‘auto stan::math::to_matrix(const std::vector<T>&, int, int) [with T = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/read_dense_inv_metric.hpp:33:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   56 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/covar_adaptation.hpp:27:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_identity_op<double>, Eigen::Matrix<double, -1, -1> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_identity_op<double>, Eigen::Matrix<double, -1, -1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_identity_op<double>, Eigen::Matrix<double, -1, -1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_identity_op<double>, Eigen::Matrix<double, -1, -1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_identity_op<double>, Eigen::Matrix<double, -1, -1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/covar_adaptation.hpp:29:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_identity_op<double>, Eigen::Matrix<double, -1, -1> > > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_identity_op<double>, Eigen::Matrix<double, -1, -1> > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_identity_op<double>, Eigen::Matrix<double, -1, -1> > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_identity_op<double>, Eigen::Matrix<double, -1, -1> > >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_identity_op<double>, Eigen::Matrix<double, -1, -1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/covar_adaptation.hpp:29:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/diag_e_metric.hpp:21:0:   recursively required by substitution of ‘template<class OtherDerived> typename Eigen::ScalarBinaryOpTraits<double, typename Eigen::internal::traits<T>::Scalar, Eigen::internal::scalar_product_op<double, typename Eigen::internal::traits<T>::Scalar> >::ReturnType Eigen::MatrixBase<Eigen::Matrix<double, -1, 1> >::dot(const Eigen::MatrixBase<Derived>&) const [with OtherDerived = <missing>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/diag_e_metric.hpp:21:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Matrix<double, -1, 1> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Matrix<double, -1, 1>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Matrix<double, -1, 1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/var_adaptation.hpp:27:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/var_adaptation.hpp:28:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> > > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> > >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/var_adaptation.hpp:28:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
In file included from /home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/standalone_gqs.hpp:7,
                 from /home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:68:
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/array_var_context.hpp: In member function ‘virtual std::vector<std::complex<double> > stan::io::array_var_context::vals_c(const std::string&) const’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/array_var_context.hpp:304: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  304 |       for (comp_iter = 0, real_iter = 0; real_iter < val_r->second.first.size();
      | 
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/array_var_context.hpp:317: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  317 |              real_iter < val_i->second.first.size();
      | 
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Matrix<double, 1, -1>, 0, Eigen::Stride<0, 0> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Matrix<double, 1, -1>, 0, Eigen::Stride<0, 0> >, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Matrix<double, 1, -1>, 0, Eigen::Stride<0, 0> >, 3>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Map<Eigen::Matrix<double, 1, -1>, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<double, 1, -1>, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Map<Eigen::Matrix<double, 1, -1>, 0, Eigen::Stride<0, 0> >, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34:   required from ‘class Eigen::MapBase<Eigen::Map<Eigen::Matrix<double, 1, -1>, 0, Eigen::Stride<0, 0> >, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Map.h:94:79:   required from ‘class Eigen::Map<Eigen::Matrix<double, 1, -1>, 0, Eigen::Stride<0, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:13:7:   required from ‘class stan::math::arena_matrix<Eigen::Matrix<double, 1, -1>, void>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/indexing/rvalue_varmat.hpp:145:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   56 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
In file included from /home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/model_header.hpp:11,
                 from stanExports_shrinkage.h:25:
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/model_base_crtp.hpp: At global scope:
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/model_base_crtp.hpp:159: warning: ‘stan::math::var stan::model::model_base_crtp<M>::log_prob(std::vector<stan::math::var_value<double>, std::allocator<stan::math::var_value<double> > >&, std::vector<int>&, std::ostream*) const [with M = model_shrinkage_namespace::model_shrinkage; stan::math::var = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’ was hidden [-Woverloaded-virtual=]
  159 |   inline math::var log_prob(std::vector<math::var>& theta,
      | 
stanExports_shrinkage.h:882: note:   by ‘model_shrinkage_namespace::model_shrinkage::log_prob’
  882 |   log_prob(std::vector<T_>& params_r, std::vector<int>& params_i,
      | 
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/model_base_crtp.hpp:154: warning: ‘double stan::model::model_base_crtp<M>::log_prob(std::vector<double>&, std::vector<int>&, std::ostream*) const [with M = model_shrinkage_namespace::model_shrinkage; std::ostream = std::basic_ostream<char>]’ was hidden [-Woverloaded-virtual=]
  154 |   inline double log_prob(std::vector<double>& theta, std::vector<int>& theta_i,
      | 
stanExports_shrinkage.h:882: note:   by ‘model_shrinkage_namespace::model_shrinkage::log_prob’
  882 |   log_prob(std::vector<T_>& params_r, std::vector<int>& params_i,
      | 
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/model_base_crtp.hpp:96: warning: ‘stan::math::var stan::model::model_base_crtp<M>::log_prob(Eigen::Matrix<stan::math::var_value<double>, -1, 1>&, std::ostream*) const [with M = model_shrinkage_namespace::model_shrinkage; stan::math::var = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’ was hidden [-Woverloaded-virtual=]
   96 |   inline math::var log_prob(Eigen::Matrix<math::var, -1, 1>& theta,
      | 
stanExports_shrinkage.h:882: note:   by ‘model_shrinkage_namespace::model_shrinkage::log_prob’
  882 |   log_prob(std::vector<T_>& params_r, std::vector<int>& params_i,
      | 
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/model_base_crtp.hpp:91: warning: ‘double stan::model::model_base_crtp<M>::log_prob(Eigen::VectorXd&, std::ostream*) const [with M = model_shrinkage_namespace::model_shrinkage; Eigen::VectorXd = Eigen::Matrix<double, -1, 1>; std::ostream = std::basic_ostream<char>]’ was hidden [-Woverloaded-virtual=]
   91 |   inline double log_prob(Eigen::VectorXd& theta,
      | 
stanExports_shrinkage.h:882: note:   by ‘model_shrinkage_namespace::model_shrinkage::log_prob’
  882 |   log_prob(std::vector<T_>& params_r, std::vector<int>& params_i,
      | 
In file included from /home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/model_header.hpp:6:
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/deserializer.hpp: In instantiation of ‘auto stan::io::deserializer<T>::read(Eigen::Index, Sizes ...) [with Ret = std::vector<Eigen::Matrix<double, -1, 1> >; Sizes = {int}; stan::require_std_vector_t<Ret>* <anonymous> = 0; stan::require_not_same_t<typename stan::value_type<S, void>::type, T>* <anonymous> = 0; T = double; Eigen::Index = long int]’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/deserializer.hpp:441:0:   required from ‘auto stan::io::deserializer<T>::read_constrain_lub(const LB&, const UB&, LP&, Sizes ...) [with Ret = std::vector<Eigen::Matrix<double, -1, 1> >; bool Jacobian = false; LB = int; UB = double; LP = double; Sizes = {int, int}; T = double]’
stanExports_shrinkage.h:439:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/deserializer.hpp:337: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::Index’ {aka ‘long int’} [-Wsign-compare]
  337 |       for (size_t i = 0; i < m; ++i) {
      | 
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<stan::math::lub_constrain<Eigen::Matrix<double, -1, 1>, int, double>(const Eigen::Matrix<double, -1, 1>&, const int&, const double&)::<lambda(auto:348&&)>, const Eigen::Matrix<double, -1, 1> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryOp<stan::math::lub_constrain<Eigen::Matrix<double, -1, 1>, int, double>(const Eigen::Matrix<double, -1, 1>&, const int&, const double&)::<lambda(auto:348&&)>, const Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseUnaryOp<stan::math::lub_constrain<Eigen::Matrix<double, -1, 1>, int, double>(const Eigen::Matrix<double, -1, 1>&, const int&, const double&)::<lambda(auto:348&&)>, const Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl<stan::math::lub_constrain<Eigen::Matrix<double, -1, 1>, int, double>(const Eigen::Matrix<double, -1, 1>&, const int&, const double&)::<lambda(auto:348&&)>, const Eigen::Matrix<double, -1, 1>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp<stan::math::lub_constrain<Eigen::Matrix<double, -1, 1>, int, double>(const Eigen::Matrix<double, -1, 1>&, const int&, const double&)::<lambda(auto:348&&)>, const Eigen::Matrix<double, -1, 1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lub_constrain.hpp:122:18:   required from ‘auto stan::math::lub_constrain(const T&, const L&, const U&) [with T = Eigen::Matrix<double, -1, 1>; L = int; U = double; stan::require_eigen_t<T_desired>* <anonymous> = 0; stan::require_all_stan_scalar_t<L, U>* <anonymous> = 0; stan::require_not_var_t<typename stan::return_type<T_x, T_sigma, T_l>::type>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lub_constrain.hpp:263:50:   required from ‘auto stan::math::lub_constrain(const std::vector<T>&, const L&, const U&, stan::return_type_t<T_x, T_sigma, T_l>&) [with T = Eigen::Matrix<double, -1, 1>; L = int; U = double; stan::require_all_not_std_vector_t<L, U>* <anonymous> = 0; stan::return_type_t<T_x, T_sigma, T_l> = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/deserializer.hpp:441:0:   required from ‘auto stan::io::deserializer<T>::read_constrain_lub(const LB&, const UB&, LP&, Sizes ...) [with Ret = std::vector<Eigen::Matrix<double, -1, 1> >; bool Jacobian = false; LB = int; UB = double; LP = double; Sizes = {int, int}; T = double]’
stanExports_shrinkage.h:439:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   56 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<stan::math::lub_constrain<Eigen::Matrix<double, -1, 1>, int, double>(const Eigen::Matrix<double, -1, 1>&, const int&, const double&, stan::return_type_t<Eigen::Matrix<double, -1, 1, 0, -1, 1>, int, double>&)::<lambda(auto:349&&)>, const Eigen::Matrix<double, -1, 1> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryOp<stan::math::lub_constrain<Eigen::Matrix<double, -1, 1>, int, double>(const Eigen::Matrix<double, -1, 1>&, const int&, const double&, stan::return_type_t<Eigen::Matrix<double, -1, 1, 0, -1, 1>, int, double>&)::<lambda(auto:349&&)>, const Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseUnaryOp<stan::math::lub_constrain<Eigen::Matrix<double, -1, 1>, int, double>(const Eigen::Matrix<double, -1, 1>&, const int&, const double&, stan::return_type_t<Eigen::Matrix<double, -1, 1, 0, -1, 1>, int, double>&)::<lambda(auto:349&&)>, const Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl<stan::math::lub_constrain<Eigen::Matrix<double, -1, 1>, int, double>(const Eigen::Matrix<double, -1, 1>&, const int&, const double&, stan::return_type_t<Eigen::Matrix<double, -1, 1, 0, -1, 1>, int, double>&)::<lambda(auto:349&&)>, const Eigen::Matrix<double, -1, 1>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp<stan::math::lub_constrain<Eigen::Matrix<double, -1, 1>, int, double>(const Eigen::Matrix<double, -1, 1>&, const int&, const double&, stan::return_type_t<Eigen::Matrix<double, -1, 1, 0, -1, 1>, int, double>&)::<lambda(auto:349&&)>, const Eigen::Matrix<double, -1, 1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lub_constrain.hpp:133:26:   required from ‘auto stan::math::lub_constrain(const T&, const L&, const U&, stan::return_type_t<T_x, T_sigma, T_l>&) [with T = Eigen::Matrix<double, -1, 1>; L = int; U = double; stan::require_eigen_t<T_desired>* <anonymous> = 0; stan::require_all_stan_scalar_t<L, U>* <anonymous> = 0; stan::require_not_var_t<typename stan::return_type<T_x, T_sigma, T_l>::type>* <anonymous> = 0; stan::return_type_t<T_x, T_sigma, T_l> = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lub_constrain.hpp:266:27:   required from ‘auto stan::math::lub_constrain(const std::vector<T>&, const L&, const U&, stan::return_type_t<T_x, T_sigma, T_l>&) [with T = Eigen::Matrix<double, -1, 1>; L = int; U = double; stan::require_all_not_std_vector_t<L, U>* <anonymous> = 0; stan::return_type_t<T_x, T_sigma, T_l> = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/deserializer.hpp:441:0:   required from ‘auto stan::io::deserializer<T>::read_constrain_lub(const LB&, const UB&, LP&, Sizes ...) [with Ret = std::vector<Eigen::Matrix<double, -1, 1> >; bool Jacobian = false; LB = int; UB = double; LP = double; Sizes = {int, int}; T = double]’
stanExports_shrinkage.h:439:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<stan::math::lub_constrain<Eigen::Matrix<double, -1, 1>, int, int>(const Eigen::Matrix<double, -1, 1>&, const int&, const int&)::<lambda(auto:348&&)>, const Eigen::Matrix<double, -1, 1> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryOp<stan::math::lub_constrain<Eigen::Matrix<double, -1, 1>, int, int>(const Eigen::Matrix<double, -1, 1>&, const int&, const int&)::<lambda(auto:348&&)>, const Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseUnaryOp<stan::math::lub_constrain<Eigen::Matrix<double, -1, 1>, int, int>(const Eigen::Matrix<double, -1, 1>&, const int&, const int&)::<lambda(auto:348&&)>, const Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl<stan::math::lub_constrain<Eigen::Matrix<double, -1, 1>, int, int>(const Eigen::Matrix<double, -1, 1>&, const int&, const int&)::<lambda(auto:348&&)>, const Eigen::Matrix<double, -1, 1>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp<stan::math::lub_constrain<Eigen::Matrix<double, -1, 1>, int, int>(const Eigen::Matrix<double, -1, 1>&, const int&, const int&)::<lambda(auto:348&&)>, const Eigen::Matrix<double, -1, 1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lub_constrain.hpp:122:18:   required from ‘auto stan::math::lub_constrain(const T&, const L&, const U&) [with T = Eigen::Matrix<double, -1, 1>; L = int; U = int; stan::require_eigen_t<T_desired>* <anonymous> = 0; stan::require_all_stan_scalar_t<L, U>* <anonymous> = 0; stan::require_not_var_t<typename stan::return_type<T_x, T_sigma, T_l>::type>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lub_constrain.hpp:263:50:   required from ‘auto stan::math::lub_constrain(const std::vector<T>&, const L&, const U&, stan::return_type_t<T_x, T_sigma, T_l>&) [with T = Eigen::Matrix<double, -1, 1>; L = int; U = int; stan::require_all_not_std_vector_t<L, U>* <anonymous> = 0; stan::return_type_t<T_x, T_sigma, T_l> = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/deserializer.hpp:441:0:   required from ‘auto stan::io::deserializer<T>::read_constrain_lub(const LB&, const UB&, LP&, Sizes ...) [with Ret = std::vector<Eigen::Matrix<double, -1, 1> >; bool Jacobian = false; LB = int; UB = int; LP = double; Sizes = {int, int}; T = double]’
stanExports_shrinkage.h:447:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<stan::math::lub_constrain<Eigen::Matrix<double, -1, 1>, int, int>(const Eigen::Matrix<double, -1, 1>&, const int&, const int&, stan::return_type_t<Eigen::Matrix<double, -1, 1, 0, -1, 1>, int, int>&)::<lambda(auto:349&&)>, const Eigen::Matrix<double, -1, 1> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryOp<stan::math::lub_constrain<Eigen::Matrix<double, -1, 1>, int, int>(const Eigen::Matrix<double, -1, 1>&, const int&, const int&, stan::return_type_t<Eigen::Matrix<double, -1, 1, 0, -1, 1>, int, int>&)::<lambda(auto:349&&)>, const Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseUnaryOp<stan::math::lub_constrain<Eigen::Matrix<double, -1, 1>, int, int>(const Eigen::Matrix<double, -1, 1>&, const int&, const int&, stan::return_type_t<Eigen::Matrix<double, -1, 1, 0, -1, 1>, int, int>&)::<lambda(auto:349&&)>, const Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl<stan::math::lub_constrain<Eigen::Matrix<double, -1, 1>, int, int>(const Eigen::Matrix<double, -1, 1>&, const int&, const int&, stan::return_type_t<Eigen::Matrix<double, -1, 1, 0, -1, 1>, int, int>&)::<lambda(auto:349&&)>, const Eigen::Matrix<double, -1, 1>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp<stan::math::lub_constrain<Eigen::Matrix<double, -1, 1>, int, int>(const Eigen::Matrix<double, -1, 1>&, const int&, const int&, stan::return_type_t<Eigen::Matrix<double, -1, 1, 0, -1, 1>, int, int>&)::<lambda(auto:349&&)>, const Eigen::Matrix<double, -1, 1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lub_constrain.hpp:133:26:   required from ‘auto stan::math::lub_constrain(const T&, const L&, const U&, stan::return_type_t<T_x, T_sigma, T_l>&) [with T = Eigen::Matrix<double, -1, 1>; L = int; U = int; stan::require_eigen_t<T_desired>* <anonymous> = 0; stan::require_all_stan_scalar_t<L, U>* <anonymous> = 0; stan::require_not_var_t<typename stan::return_type<T_x, T_sigma, T_l>::type>* <anonymous> = 0; stan::return_type_t<T_x, T_sigma, T_l> = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lub_constrain.hpp:266:27:   required from ‘auto stan::math::lub_constrain(const std::vector<T>&, const L&, const U&, stan::return_type_t<T_x, T_sigma, T_l>&) [with T = Eigen::Matrix<double, -1, 1>; L = int; U = int; stan::require_all_not_std_vector_t<L, U>* <anonymous> = 0; stan::return_type_t<T_x, T_sigma, T_l> = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/deserializer.hpp:441:0:   required from ‘auto stan::io::deserializer<T>::read_constrain_lub(const LB&, const UB&, LP&, Sizes ...) [with Ret = std::vector<Eigen::Matrix<double, -1, 1> >; bool Jacobian = false; LB = int; UB = int; LP = double; Sizes = {int, int}; T = double]’
stanExports_shrinkage.h:447:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<stan::math::lub_constrain<Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, int, int>(const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >&, const int&, const int&, stan::return_type_t<Eigen::Map<const Eigen::Matrix<double, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, int, int>&)::<lambda(auto:349&&)>, const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryOp<stan::math::lub_constrain<Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, int, int>(const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >&, const int&, const int&, stan::return_type_t<Eigen::Map<const Eigen::Matrix<double, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, int, int>&)::<lambda(auto:349&&)>, const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseUnaryOp<stan::math::lub_constrain<Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, int, int>(const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >&, const int&, const int&, stan::return_type_t<Eigen::Map<const Eigen::Matrix<double, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, int, int>&)::<lambda(auto:349&&)>, const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl<stan::math::lub_constrain<Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, int, int>(const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >&, const int&, const int&, stan::return_type_t<Eigen::Map<const Eigen::Matrix<double, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, int, int>&)::<lambda(auto:349&&)>, const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp<stan::math::lub_constrain<Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, int, int>(const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >&, const int&, const int&, stan::return_type_t<Eigen::Map<const Eigen::Matrix<double, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, int, int>&)::<lambda(auto:349&&)>, const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lub_constrain.hpp:133:26:   required from ‘auto stan::math::lub_constrain(const T&, const L&, const U&, stan::return_type_t<T_x, T_sigma, T_l>&) [with T = Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >; L = int; U = int; stan::require_eigen_t<T_desired>* <anonymous> = 0; stan::require_all_stan_scalar_t<L, U>* <anonymous> = 0; stan::require_not_var_t<typename stan::return_type<T_x, T_sigma, T_l>::type>* <anonymous> = 0; stan::return_type_t<T_x, T_sigma, T_l> = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/deserializer.hpp:441:0:   required from ‘auto stan::io::deserializer<T>::read_constrain_lub(const LB&, const UB&, LP&, Sizes ...) [with Ret = Eigen::Matrix<double, -1, 1>; bool Jacobian = false; LB = int; UB = int; LP = double; Sizes = {int}; T = double]’
stanExports_shrinkage.h:453:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<stan::math::lub_constrain<Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, int, int>(const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >&, const int&, const int&)::<lambda(auto:348&&)>, const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryOp<stan::math::lub_constrain<Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, int, int>(const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >&, const int&, const int&)::<lambda(auto:348&&)>, const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseUnaryOp<stan::math::lub_constrain<Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, int, int>(const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >&, const int&, const int&)::<lambda(auto:348&&)>, const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl<stan::math::lub_constrain<Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, int, int>(const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >&, const int&, const int&)::<lambda(auto:348&&)>, const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp<stan::math::lub_constrain<Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, int, int>(const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >&, const int&, const int&)::<lambda(auto:348&&)>, const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lub_constrain.hpp:122:18:   required from ‘auto stan::math::lub_constrain(const T&, const L&, const U&) [with T = Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >; L = int; U = int; stan::require_eigen_t<T_desired>* <anonymous> = 0; stan::require_all_stan_scalar_t<L, U>* <anonymous> = 0; stan::require_not_var_t<typename stan::return_type<T_x, T_sigma, T_l>::type>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/deserializer.hpp:443:0:   required from ‘auto stan::io::deserializer<T>::read_constrain_lub(const LB&, const UB&, LP&, Sizes ...) [with Ret = Eigen::Matrix<double, -1, 1>; bool Jacobian = false; LB = int; UB = int; LP = double; Sizes = {int}; T = double]’
stanExports_shrinkage.h:453:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<stan::math::lub_constrain<Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, int, double>(const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >&, const int&, const double&, stan::return_type_t<Eigen::Map<const Eigen::Matrix<double, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, int, double>&)::<lambda(auto:349&&)>, const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryOp<stan::math::lub_constrain<Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, int, double>(const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >&, const int&, const double&, stan::return_type_t<Eigen::Map<const Eigen::Matrix<double, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, int, double>&)::<lambda(auto:349&&)>, const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseUnaryOp<stan::math::lub_constrain<Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, int, double>(const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >&, const int&, const double&, stan::return_type_t<Eigen::Map<const Eigen::Matrix<double, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, int, double>&)::<lambda(auto:349&&)>, const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl<stan::math::lub_constrain<Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, int, double>(const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >&, const int&, const double&, stan::return_type_t<Eigen::Map<const Eigen::Matrix<double, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, int, double>&)::<lambda(auto:349&&)>, const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp<stan::math::lub_constrain<Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, int, double>(const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >&, const int&, const double&, stan::return_type_t<Eigen::Map<const Eigen::Matrix<double, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, int, double>&)::<lambda(auto:349&&)>, const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lub_constrain.hpp:133:26:   required from ‘auto stan::math::lub_constrain(const T&, const L&, const U&, stan::return_type_t<T_x, T_sigma, T_l>&) [with T = Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >; L = int; U = double; stan::require_eigen_t<T_desired>* <anonymous> = 0; stan::require_all_stan_scalar_t<L, U>* <anonymous> = 0; stan::require_not_var_t<typename stan::return_type<T_x, T_sigma, T_l>::type>* <anonymous> = 0; stan::return_type_t<T_x, T_sigma, T_l> = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/deserializer.hpp:441:0:   required from ‘auto stan::io::deserializer<T>::read_constrain_lub(const LB&, const UB&, LP&, Sizes ...) [with Ret = Eigen::Matrix<double, -1, 1>; bool Jacobian = false; LB = int; UB = double; LP = double; Sizes = {int}; T = double]’
stanExports_shrinkage.h:461:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<stan::math::lub_constrain<Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, int, double>(const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >&, const int&, const double&)::<lambda(auto:348&&)>, const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryOp<stan::math::lub_constrain<Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, int, double>(const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >&, const int&, const double&)::<lambda(auto:348&&)>, const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseUnaryOp<stan::math::lub_constrain<Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, int, double>(const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >&, const int&, const double&)::<lambda(auto:348&&)>, const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl<stan::math::lub_constrain<Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, int, double>(const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >&, const int&, const double&)::<lambda(auto:348&&)>, const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp<stan::math::lub_constrain<Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, int, double>(const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >&, const int&, const double&)::<lambda(auto:348&&)>, const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lub_constrain.hpp:122:18:   required from ‘auto stan::math::lub_constrain(const T&, const L&, const U&) [with T = Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >; L = int; U = double; stan::require_eigen_t<T_desired>* <anonymous> = 0; stan::require_all_stan_scalar_t<L, U>* <anonymous> = 0; stan::require_not_var_t<typename stan::return_type<T_x, T_sigma, T_l>::type>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/deserializer.hpp:443:0:   required from ‘auto stan::io::deserializer<T>::read_constrain_lub(const LB&, const UB&, LP&, Sizes ...) [with Ret = Eigen::Matrix<double, -1, 1>; bool Jacobian = false; LB = int; UB = double; LP = double; Sizes = {int}; T = double]’
stanExports_shrinkage.h:461:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 2>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37:   required from ‘class Eigen::TransposeImpl<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   required from ‘class Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:29:35:   required from ‘Eigen::Matrix<typename stan::value_type<T>::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0> >; stan::require_eigen_vt<std::is_arithmetic, T>* <anonymous> = 0; typename stan::value_type<T>::type = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20:   required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0>; stan::require_eigen_t<T_desired>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Product<Eigen::Matrix<double, -1, -1, 1, -1, -1>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 0>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Product<Eigen::Matrix<double, -1, -1, 1, -1, -1>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Product<Eigen::Matrix<double, -1, -1, 1, -1, -1>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7:   required from ‘class Eigen::internal::dense_product_base<Eigen::Matrix<double, -1, -1, 1, -1, -1>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 0, 8>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7:   required from ‘class Eigen::ProductImpl<Eigen::Matrix<double, -1, -1, 1, -1, -1>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product<Eigen::Matrix<double, -1, -1, 1, -1, -1>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:29:18:   required from ‘Eigen::Matrix<typename stan::value_type<T>::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0> >; stan::require_eigen_vt<std::is_arithmetic, T>* <anonymous> = 0; typename stan::value_type<T>::type = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20:   required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0>; stan::require_eigen_t<T_desired>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet<double, 3>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57:   required from ‘struct Eigen::internal::traits<Eigen::Matrix<double, 3, 1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Array.h:17:8:   required from ‘struct Eigen::internal::traits<Eigen::Array<double, 3, 1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from ‘class Eigen::PlainObjectBase<Eigen::Array<double, 3, 1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Array.h:45:7:   required from ‘class Eigen::Array<double, 3, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:28:11:   required from ‘T_return stan::math::internal::hypergeometric_3F2_infsum(const Ta&, const Tb&, const Tz&, double, int) [with Ta = std::vector<double>; Tb = std::vector<double>; Tz = double; T_return = double; ArrayAT = Eigen::Array<double, 3, 1>; ArrayBT = Eigen::Array<double, 3, 1>; stan::require_all_vector_t<T_y, T_high>* <anonymous> = 0; stan::require_stan_scalar_t<T2>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:123:47:   required from ‘auto stan::math::hypergeometric_3F2(const Ta&, const Tb&, const Tz&) [with Ta = std::vector<double>; Tb = std::vector<double>; Tz = double; stan::require_all_vector_t<T_y, T_high>* <anonymous> = 0; stan::require_stan_scalar_t<T2>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:148:28:   required from ‘auto stan::math::hypergeometric_3F2(const std::initializer_list<_Tp>&, const std::initializer_list<_Value>&, const Tz&) [with Ta = double; Tb = double; Tz = double; stan::require_all_stan_scalar_t<Ta, Tb, Tz>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/inv_inc_beta.hpp:77:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
  190 |          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
      |                                       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
  190 |          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
      |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
  208 |   typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
      |                                                                                        ^~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Array<double, 3, 1>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Array<double, 3, 1>, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Array<double, 3, 1>, 3>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Array<double, 3, 1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::Array<double, 3, 1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from ‘class Eigen::PlainObjectBase<Eigen::Array<double, 3, 1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Array.h:45:7:   required from ‘class Eigen::Array<double, 3, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:28:11:   required from ‘T_return stan::math::internal::hypergeometric_3F2_infsum(const Ta&, const Tb&, const Tz&, double, int) [with Ta = std::vector<double>; Tb = std::vector<double>; Tz = double; T_return = double; ArrayAT = Eigen::Array<double, 3, 1>; ArrayBT = Eigen::Array<double, 3, 1>; stan::require_all_vector_t<T_y, T_high>* <anonymous> = 0; stan::require_stan_scalar_t<T2>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:123:47:   required from ‘auto stan::math::hypergeometric_3F2(const Ta&, const Tb&, const Tz&) [with Ta = std::vector<double>; Tb = std::vector<double>; Tz = double; stan::require_all_vector_t<T_y, T_high>* <anonymous> = 0; stan::require_stan_scalar_t<T2>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:148:28:   required from ‘auto stan::math::hypergeometric_3F2(const std::initializer_list<_Tp>&, const std::initializer_list<_Value>&, const Tz&) [with Ta = double; Tb = double; Tz = double; stan::require_all_stan_scalar_t<Ta, Tb, Tz>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/inv_inc_beta.hpp:77:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   56 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Map<const Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Map<const Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> >, 2>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Map<const Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::Map<const Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Map<const Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> >, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Map.h:94:79:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/holder.hpp:370:41:   required by substitution of ‘template<class F, class ... Args, stan::require_plain_type_t<decltype (declval<F>()((declval<Args&>)()...))>* <anonymous> > auto stan::math::make_holder(const F&, Args&& ...) [with F = stan::math::as_array_or_scalar<const std::vector<double>&>(const std::vector<double>&)::<lambda(auto:14&)>; Args = {const std::vector<double, std::allocator<double> >&}; stan::require_plain_type_t<decltype (declval<F>()((declval<Args&>)()...))>* <anonymous> = <missing>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/as_array_or_scalar.hpp:72:21:   required from ‘auto stan::math::as_array_or_scalar(T&&) [with T = const std::vector<double>&; stan::require_std_vector_t<T>* <anonymous> = 0; stan::require_not_std_vector_t<typename stan::value_type<T>::type>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:28:39:   required from ‘T_return stan::math::internal::hypergeometric_3F2_infsum(const Ta&, const Tb&, const Tz&, double, int) [with Ta = std::vector<double>; Tb = std::vector<double>; Tz = double; T_return = double; ArrayAT = Eigen::Array<double, 3, 1>; ArrayBT = Eigen::Array<double, 3, 1>; stan::require_all_vector_t<T_y, T_high>* <anonymous> = 0; stan::require_stan_scalar_t<T2>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:123:47:   required from ‘auto stan::math::hypergeometric_3F2(const Ta&, const Tb&, const Tz&) [with Ta = std::vector<double>; Tb = std::vector<double>; Tz = double; stan::require_all_vector_t<T_y, T_high>* <anonymous> = 0; stan::require_stan_scalar_t<T2>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:148:28:   required from ‘auto stan::math::hypergeometric_3F2(const std::initializer_list<_Tp>&, const std::initializer_list<_Value>&, const Tz&) [with Ta = double; Tb = double; Tz = double; stan::require_all_stan_scalar_t<Ta, Tb, Tz>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/inv_inc_beta.hpp:77:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, 3, 1> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, 3, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, 3, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7:   required from ‘class Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, 3, 1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:38:28:   required from ‘struct Eigen::internal::traits<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_EQ>, const Eigen::Array<double, 3, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, 3, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_EQ>, const Eigen::Array<double, 3, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, 3, 1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_EQ>, const Eigen::Array<double, 3, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, 3, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:47:43:   required from ‘T_return stan::math::internal::hypergeometric_3F2_infsum(const Ta&, const Tb&, const Tz&, double, int) [with Ta = std::vector<double>; Tb = std::vector<double>; Tz = double; T_return = double; ArrayAT = Eigen::Array<double, 3, 1>; ArrayBT = Eigen::Array<double, 3, 1>; stan::require_all_vector_t<T_y, T_high>* <anonymous> = 0; stan::require_stan_scalar_t<T2>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:123:47:   required from ‘auto stan::math::hypergeometric_3F2(const Ta&, const Tb&, const Tz&) [with Ta = std::vector<double>; Tb = std::vector<double>; Tz = double; stan::require_all_vector_t<T_y, T_high>* <anonymous> = 0; stan::require_stan_scalar_t<T2>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:148:28:   required from ‘auto stan::math::hypergeometric_3F2(const std::initializer_list<_Tp>&, const std::initializer_list<_Value>&, const Tz&) [with Ta = double; Tb = double; Tz = double; stan::require_all_stan_scalar_t<Ta, Tb, Tz>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/inv_inc_beta.hpp:77:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_EQ>, const Eigen::Array<double, 3, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, 3, 1> > >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, 3, 1> >, Eigen::Array<double, 3, 1> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_EQ>, const Eigen::Array<double, 3, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, 3, 1> > >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, 3, 1> >, Eigen::Array<double, 3, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_EQ>, const Eigen::Array<double, 3, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, 3, 1> > >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, 3, 1> >, Eigen::Array<double, 3, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Select.h:52:7:   required from ‘class Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_EQ>, const Eigen::Array<double, 3, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, 3, 1> > >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, 3, 1> >, Eigen::Array<double, 3, 1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:47:55:   required from ‘T_return stan::math::internal::hypergeometric_3F2_infsum(const Ta&, const Tb&, const Tz&, double, int) [with Ta = std::vector<double>; Tb = std::vector<double>; Tz = double; T_return = double; ArrayAT = Eigen::Array<double, 3, 1>; ArrayBT = Eigen::Array<double, 3, 1>; stan::require_all_vector_t<T_y, T_high>* <anonymous> = 0; stan::require_stan_scalar_t<T2>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:123:47:   required from ‘auto stan::math::hypergeometric_3F2(const Ta&, const Tb&, const Tz&) [with Ta = std::vector<double>; Tb = std::vector<double>; Tz = double; stan::require_all_vector_t<T_y, T_high>* <anonymous> = 0; stan::require_stan_scalar_t<T2>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:148:28:   required from ‘auto stan::math::hypergeometric_3F2(const std::initializer_list<_Tp>&, const std::initializer_list<_Value>&, const Tz&) [with Ta = double; Tb = double; Tz = double; stan::require_all_stan_scalar_t<Ta, Tb, Tz>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/inv_inc_beta.hpp:77:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_EQ>, const Eigen::Array<double, 3, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, 3, 1> > >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, 3, 1> >, Eigen::Array<double, 3, 1> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_EQ>, const Eigen::Array<double, 3, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, 3, 1> > >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, 3, 1> >, Eigen::Array<double, 3, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_EQ>, const Eigen::Array<double, 3, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, 3, 1> > >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, 3, 1> >, Eigen::Array<double, 3, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_abs_op<double>, const Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_EQ>, const Eigen::Array<double, 3, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, 3, 1> > >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, 3, 1> >, Eigen::Array<double, 3, 1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_EQ>, const Eigen::Array<double, 3, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, 3, 1> > >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, 3, 1> >, Eigen::Array<double, 3, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/fabs.hpp:67:51:   required from ‘stan::math::fabs<Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_EQ>, const Eigen::Array<double, 3, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, 3, 1> > >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, 3, 1> >, Eigen::Array<double, 3, 1> > >(const Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_EQ>, const Eigen::Array<double, 3, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, 3, 1> > >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, 3, 1> >, Eigen::Array<double, 3, 1> >&)::<lambda(const auto:9&)> [with auto:9 = Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_EQ>, const Eigen::Array<double, 3, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, 3, 1> > >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, 3, 1> >, Eigen::Array<double, 3, 1> >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:53:76:   required from ‘static auto stan::math::apply_vector_unary<T, typename std::enable_if<stan::is_eigen<typename std::decay<_Tp>::type>::value, void>::type>::apply(const T&, const F&) [with F = stan::math::fabs<Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_EQ>, const Eigen::Array<double, 3, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, 3, 1> > >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, 3, 1> >, Eigen::Array<double, 3, 1> > >(const Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_EQ>, const Eigen::Array<double, 3, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, 3, 1> > >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, 3, 1> >, Eigen::Array<double, 3, 1> >&)::<lambda(const auto:9&)>; T2 = Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_EQ>, const Eigen::Array<double, 3, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, 3, 1> > >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, 3, 1> >, Eigen::Array<double, 3, 1> >; stan::require_t<stan::is_eigen_array<typename stan::plain_type<T2, void>::type> >* <anonymous> = 0; T = Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_EQ>, const Eigen::Array<double, 3, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, 3, 1> > >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, 3, 1> >, Eigen::Array<double, 3, 1> >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/fabs.hpp:66:46:   required from ‘auto stan::math::fabs(const Container&) [with Container = Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_EQ>, const Eigen::Array<double, 3, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, 3, 1> > >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, 3, 1> >, Eigen::Array<double, 3, 1> >; stan::require_container_st<std::is_arithmetic, Container>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:47:37:   required from ‘T_return stan::math::internal::hypergeometric_3F2_infsum(const Ta&, const Tb&, const Tz&, double, int) [with Ta = std::vector<double>; Tb = std::vector<double>; Tz = double; T_return = double; ArrayAT = Eigen::Array<double, 3, 1>; ArrayBT = Eigen::Array<double, 3, 1>; stan::require_all_vector_t<T_y, T_high>* <anonymous> = 0; stan::require_stan_scalar_t<T2>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:123:47:   required from ‘auto stan::math::hypergeometric_3F2(const Ta&, const Tb&, const Tz&) [with Ta = std::vector<double>; Tb = std::vector<double>; Tz = double; stan::require_all_vector_t<T_y, T_high>* <anonymous> = 0; stan::require_stan_scalar_t<T2>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:148:28:   required from ‘auto stan::math::hypergeometric_3F2(const std::initializer_list<_Tp>&, const std::initializer_list<_Value>&, const Tz&) [with Ta = double; Tb = double; Tz = double; stan::require_all_stan_scalar_t<Ta, Tb, Tz>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/inv_inc_beta.hpp:77:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_log_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_EQ>, const Eigen::Array<double, 3, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, 3, 1> > >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, 3, 1> >, Eigen::Array<double, 3, 1> > > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_log_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_EQ>, const Eigen::Array<double, 3, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, 3, 1> > >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, 3, 1> >, Eigen::Array<double, 3, 1> > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_log_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_EQ>, const Eigen::Array<double, 3, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, 3, 1> > >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, 3, 1> >, Eigen::Array<double, 3, 1> > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_log_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_EQ>, const Eigen::Array<double, 3, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, 3, 1> > >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, 3, 1> >, Eigen::Array<double, 3, 1> > >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp<Eigen::internal::scalar_log_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_EQ>, const Eigen::Array<double, 3, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, 3, 1> > >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, 3, 1> >, Eigen::Array<double, 3, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/log.hpp:66:51:   required from ‘stan::math::log<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_EQ>, const Eigen::Array<double, 3, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, 3, 1> > >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, 3, 1> >, Eigen::Array<double, 3, 1> > > >(const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_EQ>, const Eigen::Array<double, 3, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, 3, 1> > >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, 3, 1> >, Eigen::Array<double, 3, 1> > >&)::<lambda(const auto:169&)> [with auto:169 = Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_EQ>, const Eigen::Array<double, 3, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, 3, 1> > >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, 3, 1> >, Eigen::Array<double, 3, 1> > >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:53:76:   required from ‘static auto stan::math::apply_vector_unary<T, typename std::enable_if<stan::is_eigen<typename std::decay<_Tp>::type>::value, void>::type>::apply(const T&, const F&) [with F = stan::math::log<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_EQ>, const Eigen::Array<double, 3, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, 3, 1> > >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, 3, 1> >, Eigen::Array<double, 3, 1> > > >(const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_EQ>, const Eigen::Array<double, 3, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, 3, 1> > >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, 3, 1> >, Eigen::Array<double, 3, 1> > >&)::<lambda(const auto:169&)>; T2 = Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_EQ>, const Eigen::Array<double, 3, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, 3, 1> > >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, 3, 1> >, Eigen::Array<double, 3, 1> > >; stan::require_t<stan::is_eigen_array<typename stan::plain_type<T2, void>::type> >* <anonymous> = 0; T = Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_EQ>, const Eigen::Array<double, 3, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, 3, 1> > >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, 3, 1> >, Eigen::Array<double, 3, 1> > >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/log.hpp:65:46:   required from ‘auto stan::math::log(const Container&) [with Container = Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_EQ>, const Eigen::Array<double, 3, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, 3, 1> > >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, 3, 1> >, Eigen::Array<double, 3, 1> > >; stan::require_container_st<std::is_arithmetic, Container>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:49:25:   required from ‘T_return stan::math::internal::hypergeometric_3F2_infsum(const Ta&, const Tb&, const Tz&, double, int) [with Ta = std::vector<double>; Tb = std::vector<double>; Tz = double; T_return = double; ArrayAT = Eigen::Array<double, 3, 1>; ArrayBT = Eigen::Array<double, 3, 1>; stan::require_all_vector_t<T_y, T_high>* <anonymous> = 0; stan::require_stan_scalar_t<T2>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:123:47:   required from ‘auto stan::math::hypergeometric_3F2(const Ta&, const Tb&, const Tz&) [with Ta = std::vector<double>; Tb = std::vector<double>; Tz = double; stan::require_all_vector_t<T_y, T_high>* <anonymous> = 0; stan::require_stan_scalar_t<T2>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:148:28:   required from ‘auto stan::math::hypergeometric_3F2(const std::initializer_list<_Tp>&, const std::initializer_list<_Value>&, const Tz&) [with Ta = double; Tb = double; Tz = double; stan::require_all_stan_scalar_t<Ta, Tb, Tz>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/inv_inc_beta.hpp:77:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, int>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, int>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, int>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_quotient_op<double, int>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, int>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lmgamma.hpp:58:75:   required from ‘stan::return_type_t<T> stan::math::lmgamma(int, T) [with T = double; stan::require_arithmetic_t<T>* <anonymous> = 0; stan::return_type_t<T> = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/lmgamma.hpp:16:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, int>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, int>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, int>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, int>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, int>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lmgamma.hpp:58:32:   required from ‘stan::return_type_t<T> stan::math::lmgamma(int, T) [with T = double; stan::require_arithmetic_t<T>* <anonymous> = 0; stan::return_type_t<T> = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/lmgamma.hpp:16:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<stan::math::apply_scalar_unary<stan::math::lgamma_fun, Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, int>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > >, void>::apply(const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, int>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > >&)::<lambda(auto:3&&)>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, int>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryOp<stan::math::apply_scalar_unary<stan::math::lgamma_fun, Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, int>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > >, void>::apply(const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, int>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > >&)::<lambda(auto:3&&)>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, int>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseUnaryOp<stan::math::apply_scalar_unary<stan::math::lgamma_fun, Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, int>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > >, void>::apply(const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, int>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > >&)::<lambda(auto:3&&)>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, int>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl<stan::math::apply_scalar_unary<stan::math::lgamma_fun, Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, int>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > >, void>::apply(const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, int>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > >&)::<lambda(auto:3&&)>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, int>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp<stan::math::apply_scalar_unary<stan::math::lgamma_fun, Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, int>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > >, void>::apply(const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, int>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > >&)::<lambda(auto:3&&)>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, int>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:62:23:   required from ‘static auto stan::math::apply_scalar_unary<F, T, typename std::enable_if<stan::is_eigen<typename std::decay<_Tp2>::type>::value, void>::type>::apply(const T&) [with F = stan::math::lgamma_fun; T = Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, int>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:72:38:   required from ‘struct stan::math::apply_scalar_unary<stan::math::lgamma_fun, Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, int>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > >, void>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lgamma.hpp:120:50:   required from ‘auto stan::math::lgamma(const T&) [with T = Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, int>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::linspaced_op<double>, Eigen::Array<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > >; stan::require_not_var_matrix_t<Container>* <anonymous> = 0; stan::require_not_nonscalar_prim_or_rev_kernel_expression_t<Container>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lmgamma.hpp:58:29:   required from ‘stan::return_type_t<T> stan::math::lmgamma(int, T) [with T = double; stan::require_arithmetic_t<T>* <anonymous> = 0; stan::return_type_t<T> = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/lmgamma.hpp:16:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Matrix<double, -1, 1> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_abs2_op<double>, const Eigen::Matrix<double, -1, 1>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Matrix<double, -1, 1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:98:40:   required from ‘typename Eigen::NumTraits<typename Eigen::internal::traits<T>::Scalar>::Real Eigen::MatrixBase<Derived>::squaredNorm() const [with Derived = Eigen::Matrix<double, -1, 1>; typename Eigen::NumTraits<typename Eigen::internal::traits<T>::Scalar>::Real = double; typename Eigen::internal::traits<T>::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/variance.hpp:28:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Array<double, -1, -1>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Array<double, -1, -1>, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Array<double, -1, -1>, 3>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Array<double, -1, -1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::Array<double, -1, -1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from ‘class Eigen::PlainObjectBase<Eigen::Array<double, -1, -1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Array.h:45:7:   required from ‘class Eigen::Array<double, -1, -1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/SelfCwiseBinaryOp.h:27:67:   required from ‘Derived& Eigen::ArrayBase<Derived>::operator+=(const Scalar&) [with Derived = Eigen::ArrayWrapper<Eigen::Matrix<double, -1, -1> >; Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/variational/families/normal_fullrank.hpp:280:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, -1> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, -1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, -1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7:   required from ‘class Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, -1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/SelfCwiseBinaryOp.h:27:67:   required from ‘Derived& Eigen::ArrayBase<Derived>::operator+=(const Scalar&) [with Derived = Eigen::ArrayWrapper<Eigen::Matrix<double, -1, -1> >; Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/variational/families/normal_fullrank.hpp:280:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Matrix<double, -1, -1> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Matrix<double, -1, -1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Matrix<double, -1, -1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Matrix<double, -1, -1>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Matrix<double, -1, -1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/BooleanRedux.h:156:22:   required from ‘bool Eigen::DenseBase<Derived>::allFinite() const [with Derived = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/covar_adaptation.hpp:31:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/array_var_context.hpp: In instantiation of ‘std::vector<long unsigned int> stan::io::array_var_context::validate_dims(const std::vector<std::__cxx11::basic_string<char> >&, T, const std::vector<std::vector<long unsigned int> >&) [with T = long unsigned int]’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/array_var_context.hpp:97:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/array_var_context.hpp:74: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<long unsigned int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   74 |     for (int i = 0; i < dims.size(); i++) {
      | 
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/array_var_context.hpp: In instantiation of ‘std::vector<long unsigned int> stan::io::array_var_context::validate_dims(const std::vector<std::__cxx11::basic_string<char> >&, T, const std::vector<std::vector<long unsigned int> >&) [with T = long int]’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/array_var_context.hpp:118:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/array_var_context.hpp:74: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<long unsigned int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<stan::math::value_of_rec<Eigen::Map<const Eigen::Array<int, -1, 1>, 0, Eigen::Stride<0, 0> > >(Eigen::Map<const Eigen::Array<int, -1, 1>, 0, Eigen::Stride<0, 0> >&&)::<lambda(auto:1&)>::<lambda(auto:2)>, const Eigen::Map<const Eigen::Array<int, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryOp<stan::math::value_of_rec<Eigen::Map<const Eigen::Array<int, -1, 1>, 0, Eigen::Stride<0, 0> > >(Eigen::Map<const Eigen::Array<int, -1, 1>, 0, Eigen::Stride<0, 0> >&&)::<lambda(auto:1&)>::<lambda(auto:2)>, const Eigen::Map<const Eigen::Array<int, -1, 1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseUnaryOp<stan::math::value_of_rec<Eigen::Map<const Eigen::Array<int, -1, 1>, 0, Eigen::Stride<0, 0> > >(Eigen::Map<const Eigen::Array<int, -1, 1>, 0, Eigen::Stride<0, 0> >&&)::<lambda(auto:1&)>::<lambda(auto:2)>, const Eigen::Map<const Eigen::Array<int, -1, 1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl<stan::math::value_of_rec<Eigen::Map<const Eigen::Array<int, -1, 1>, 0, Eigen::Stride<0, 0> > >(Eigen::Map<const Eigen::Array<int, -1, 1>, 0, Eigen::Stride<0, 0> >&&)::<lambda(auto:1&)>::<lambda(auto:2)>, const Eigen::Map<const Eigen::Array<int, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp<stan::math::value_of_rec<Eigen::Map<const Eigen::Array<int, -1, 1>, 0, Eigen::Stride<0, 0> > >(Eigen::Map<const Eigen::Array<int, -1, 1>, 0, Eigen::Stride<0, 0> >&&)::<lambda(auto:1&)>::<lambda(auto:2)>, const Eigen::Map<const Eigen::Array<int, -1, 1>, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/value_of_rec.hpp:110:66:   required from ‘stan::math::value_of_rec<Eigen::Map<const Eigen::Array<int, -1, 1>, 0, Eigen::Stride<0, 0> > >(Eigen::Map<const Eigen::Array<int, -1, 1>, 0, Eigen::Stride<0, 0> >&&)::<lambda(auto:1&)> [with auto:1 = Eigen::Map<const Eigen::Array<int, -1, 1>, 0, Eigen::Stride<0, 0> >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/holder.hpp:370:41:   required by substitution of ‘template<class F, class ... Args, stan::require_plain_type_t<decltype (declval<F>()((declval<Args&>)()...))>* <anonymous> > auto stan::math::make_holder(const F&, Args&& ...) [with F = stan::math::value_of_rec<Eigen::Map<const Eigen::Array<int, -1, 1>, 0, Eigen::Stride<0, 0> > >(Eigen::Map<const Eigen::Array<int, -1, 1>, 0, Eigen::Stride<0, 0> >&&)::<lambda(auto:1&)>; Args = {Eigen::Map<const Eigen::Array<int, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >}; stan::require_plain_type_t<decltype (declval<F>()((declval<Args&>)()...))>* <anonymous> = <missing>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/value_of_rec.hpp:108:21:   required from ‘auto stan::math::value_of_rec(T&&) [with T = Eigen::Map<const Eigen::Array<int, -1, 1>, 0, Eigen::Stride<0, 0> >; <template-parameter-1-2> = void; <template-parameter-1-3> = void]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_greater_or_equal.hpp:157:30:   required from ‘void stan::math::check_greater_or_equal(const char*, const char*, const T_y&, const T_low&, Idxs ...) [with T_y = std::vector<int>; T_low = int; stan::require_vector_t<T_y>* <anonymous> = 0; stan::require_not_std_vector_vt<stan::is_container_or_var_matrix, T_y>* <anonymous> = 0; stan::require_stan_scalar_t<V>* <anonymous> = 0; Idxs = {}]’
stanExports_shrinkage.h:139:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   56 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
stanExports_shrinkage.h: In instantiation of ‘void model_shrinkage_namespace::model_shrinkage::unconstrain_array_impl(const VecVar&, const VecI&, VecVar&, std::ostream*) const [with VecVar = std::vector<double>; VecI = std::vector<int>; stan::require_vector_t<T_y>* <anonymous> = 0; stan::require_vector_like_vt<std::is_integral, VecI>* <anonymous> = 0; std::ostream = std::basic_ostream<char>]’:
stanExports_shrinkage.h:910:0:   required from here
stanExports_shrinkage.h:515: warning: variable ‘pos__’ set but not used [-Wunused-but-set-variable]
  515 |       int pos__ = std::numeric_limits<int>::min();
      | 
stanExports_shrinkage.h: In instantiation of ‘void model_shrinkage_namespace::model_shrinkage::unconstrain_array_impl(const VecVar&, const VecI&, VecVar&, std::ostream*) const [with VecVar = Eigen::Matrix<double, -1, 1>; VecI = std::vector<int>; stan::require_vector_t<T_y>* <anonymous> = 0; stan::require_vector_like_vt<std::is_integral, VecI>* <anonymous> = 0; std::ostream = std::basic_ostream<char>]’:
stanExports_shrinkage.h:920:0:   required from here
stanExports_shrinkage.h:515: warning: variable ‘pos__’ set but not used [-Wunused-but-set-variable]
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp: In instantiation of ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::standalone_gqs(SEXP, SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’:
stanExports_shrinkage.cc:30:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1252: warning: variable ‘ret’ set but not used [-Wunused-but-set-variable]
 1252 |     int ret = stan::services::error_codes::CONFIG;
      | 
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet<double, 2>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57:   required from ‘struct Eigen::internal::traits<Eigen::Matrix<double, 2, 1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<double, 2, 1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from ‘class Eigen::Matrix<double, 2, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_2F1.hpp:181:31:   required from ‘stan::return_type_t<Ta1, Ta1, Tb, Tz> stan::math::hypergeometric_2F1(const Ta1&, const Ta2&, const Tb&, const Tz&) [with Ta1 = double; Ta2 = double; Tb = double; Tz = double; ScalarT = double; OptT = boost::optional<double>; stan::require_all_arithmetic_t<Ta1, Ta2, Tb, Tz>* <anonymous> = 0; stan::return_type_t<Ta1, Ta1, Tb, Tz> = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:190:39:   required from ‘TupleT stan::math::internal::grad_2F1_impl(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool calc_a1 = true; bool calc_a2 = true; bool calc_b1 = true; bool calc_z = true; T1 = double; T2 = double; T3 = double; T_z = double; ScalarT = double; TupleT = std::tuple<double, double, double, double>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:306:57:   required from ‘auto stan::math::grad_2F1(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool ReturnSameT = true; T1 = double; T2 = double; T3 = double; T_z = double; stan::require_t<std::integral_constant<bool, __v> >* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/grad_inc_beta.hpp:37:25:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
  190 |          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
      |                                       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
  190 |          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
      |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
  208 |   typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
      |                                                                                        ^~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 2, 1>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 2, 1>, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 2, 1>, 3>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Matrix<double, 2, 1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Matrix<double, 2, 1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<double, 2, 1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from ‘class Eigen::Matrix<double, 2, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_2F1.hpp:181:31:   required from ‘stan::return_type_t<Ta1, Ta1, Tb, Tz> stan::math::hypergeometric_2F1(const Ta1&, const Ta2&, const Tb&, const Tz&) [with Ta1 = double; Ta2 = double; Tb = double; Tz = double; ScalarT = double; OptT = boost::optional<double>; stan::require_all_arithmetic_t<Ta1, Ta2, Tb, Tz>* <anonymous> = 0; stan::return_type_t<Ta1, Ta1, Tb, Tz> = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:190:39:   required from ‘TupleT stan::math::internal::grad_2F1_impl(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool calc_a1 = true; bool calc_a2 = true; bool calc_b1 = true; bool calc_z = true; T1 = double; T2 = double; T3 = double; T_z = double; ScalarT = double; TupleT = std::tuple<double, double, double, double>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:306:57:   required from ‘auto stan::math::grad_2F1(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool ReturnSameT = true; T1 = double; T2 = double; T3 = double; T_z = double; stan::require_t<std::integral_constant<bool, __v> >* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/grad_inc_beta.hpp:37:25:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   56 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 1, 1, 0, 1, 1>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 1, 1, 0, 1, 1>, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 1, 1, 0, 1, 1>, 3>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Matrix<double, 1, 1, 0, 1, 1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Matrix<double, 1, 1, 0, 1, 1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<double, 1, 1, 0, 1, 1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from ‘class Eigen::Matrix<double, 1, 1, 0, 1, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_2F1.hpp:182:31:   required from ‘stan::return_type_t<Ta1, Ta1, Tb, Tz> stan::math::hypergeometric_2F1(const Ta1&, const Ta2&, const Tb&, const Tz&) [with Ta1 = double; Ta2 = double; Tb = double; Tz = double; ScalarT = double; OptT = boost::optional<double>; stan::require_all_arithmetic_t<Ta1, Ta2, Tb, Tz>* <anonymous> = 0; stan::return_type_t<Ta1, Ta1, Tb, Tz> = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:190:39:   required from ‘TupleT stan::math::internal::grad_2F1_impl(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool calc_a1 = true; bool calc_a2 = true; bool calc_b1 = true; bool calc_z = true; T1 = double; T2 = double; T3 = double; T_z = double; ScalarT = double; TupleT = std::tuple<double, double, double, double>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:306:57:   required from ‘auto stan::math::grad_2F1(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool ReturnSameT = true; T1 = double; T2 = double; T3 = double; T_z = double; stan::require_t<std::integral_constant<bool, __v> >* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/grad_inc_beta.hpp:37:25:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Array<double, 3, 1> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Array<double, 3, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Array<double, 3, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_abs_op<double>, const Eigen::Array<double, 3, 1>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Array<double, 3, 1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:117:39:   required from ‘TupleT stan::math::internal::grad_2F1_impl_ab(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool calc_a1 = true; bool calc_a2 = true; bool calc_b1 = true; T1 = double; T2 = double; T3 = double; T_z = double; ScalarT = double; TupleT = std::tuple<double, double, double>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:204:78:   required from ‘TupleT stan::math::internal::grad_2F1_impl(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool calc_a1 = true; bool calc_a2 = true; bool calc_b1 = true; bool calc_z = true; T1 = double; T2 = double; T3 = double; T_z = double; ScalarT = double; TupleT = std::tuple<double, double, double, double>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:306:57:   required from ‘auto stan::math::grad_2F1(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool ReturnSameT = true; T1 = double; T2 = double; T3 = double; T_z = double; stan::require_t<std::integral_constant<bool, __v> >* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/grad_inc_beta.hpp:37:25:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_cast_op<double, double>, const Eigen::Map<const Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_cast_op<double, double>, const Eigen::Map<const Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_cast_op<double, double>, const Eigen::Map<const Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_cast_op<double, double>, const Eigen::Map<const Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp<Eigen::internal::scalar_cast_op<double, double>, const Eigen::Map<const Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:513:38:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/../plugins/CommonCwiseUnaryOps.h:62:1:   required by substitution of ‘template<class NewType> typename Eigen::DenseBase<Eigen::Map<const Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > >::CastXpr<NewType>::Type Eigen::DenseBase<Eigen::Map<const Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > >::cast() const [with NewType = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/append_row.hpp:102:38:   required from ‘Eigen::Matrix<typename stan::return_type<T1, T2>::type, -1, 1> stan::math::append_row(const ColVec&, const Scal&) [with ColVec = Eigen::Map<const Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> >; Scal = double; stan::require_t<stan::is_eigen_col_vector<T> >* <anonymous> = 0; stan::require_stan_scalar_t<V>* <anonymous> = 0; typename stan::return_type<T1, T2>::type = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:29:31:   required from ‘T_return stan::math::internal::hypergeometric_3F2_infsum(const Ta&, const Tb&, const Tz&, double, int) [with Ta = std::vector<double>; Tb = std::vector<double>; Tz = double; T_return = double; ArrayAT = Eigen::Array<double, 3, 1>; ArrayBT = Eigen::Array<double, 3, 1>; stan::require_all_vector_t<T_y, T_high>* <anonymous> = 0; stan::require_stan_scalar_t<T2>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:123:47:   required from ‘auto stan::math::hypergeometric_3F2(const Ta&, const Tb&, const Tz&) [with Ta = std::vector<double>; Tb = std::vector<double>; Tz = double; stan::require_all_vector_t<T_y, T_high>* <anonymous> = 0; stan::require_stan_scalar_t<T2>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:148:28:   required from ‘auto stan::math::hypergeometric_3F2(const std::initializer_list<_Tp>&, const std::initializer_list<_Value>&, const Tz&) [with Ta = double; Tb = double; Tz = double; stan::require_all_stan_scalar_t<Ta, Tb, Tz>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/inv_inc_beta.hpp:77:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
In file included from /home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_not_nan.hpp:5,
                 from /home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_2F1_converges.hpp:5,
                 from /home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err.hpp:4,
                 from /home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim.hpp:12:
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp: In instantiation of ‘void stan::math::elementwise_check(const F&, const char*, const char*, const T&, const char*, const Indexings& ...) [with F = check_not_nan<Eigen::Matrix<double, -1, 1> >(const char*, const char*, const Eigen::Matrix<double, -1, 1>&)::<lambda(double)>; T = Eigen::Matrix<double, -1, 1>; Indexings = {}; stan::require_eigen_t<T>* <anonymous> = 0; std::enable_if_t<((Eigen::internal::traits<_Rhs>::Flags & Eigen::LinearAccessBit) || T::IsVectorAtCompileTime)>* <anonymous> = 0]’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_not_nan.hpp:28:20:   required from ‘void stan::math::check_not_nan(const char*, const char*, const T_y&) [with T_y = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/variational/families/normal_fullrank.hpp:47:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:153:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase<Eigen::Matrix<double, -1, 1> >::Index’ {aka ‘long int’} [-Wsign-compare]
  153 |   for (size_t i = 0; i < x.size(); i++) {
      |                      ~~^~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp: In instantiation of ‘void stan::math::elementwise_check(const F&, const char*, const char*, const T&, const char*, const Indexings& ...) [with F = check_not_nan<Eigen::Matrix<double, -1, -1> >(const char*, const char*, const Eigen::Matrix<double, -1, -1>&)::<lambda(double)>; T = Eigen::Matrix<double, -1, -1>; Indexings = {}; stan::require_eigen_t<T>* <anonymous> = 0; std::enable_if_t<(((!(Eigen::internal::traits<_Rhs>::Flags & Eigen::LinearAccessBit)) && (! T::IsVectorAtCompileTime)) && (!(Eigen::internal::traits<_Rhs>::Flags & Eigen::RowMajorBit)))>* <anonymous> = 0]’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_not_nan.hpp:28:20:   required from ‘void stan::math::check_not_nan(const char*, const char*, const T_y&) [with T_y = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/variational/families/normal_fullrank.hpp:74:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:207:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::Index’ {aka ‘long int’} [-Wsign-compare]
  207 |   for (size_t i = 0; i < x.rows(); i++) {
      |                      ~~^~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:208:26: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::Index’ {aka ‘long int’} [-Wsign-compare]
  208 |     for (size_t j = 0; j < x.cols(); j++) {
      |                        ~~^~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp: In instantiation of ‘void stan::math::elementwise_check(const F&, const char*, const char*, const T&, const char*, const Indexings& ...) [with F = check_finite<Eigen::Matrix<double, -1, 1> >(const char*, const char*, const Eigen::Matrix<double, -1, 1>&)::<lambda(double)>; T = Eigen::Matrix<double, -1, 1>; Indexings = {}; stan::require_eigen_t<T>* <anonymous> = 0; std::enable_if_t<((Eigen::internal::traits<_Rhs>::Flags & Eigen::LinearAccessBit) || T::IsVectorAtCompileTime)>* <anonymous> = 0]’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_finite.hpp:29:20:   required from ‘void stan::math::check_finite(const char*, const char*, const T_y&) [with T_y = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/validate_diag_inv_metric.hpp:21:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:153:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase<Eigen::Matrix<double, -1, 1> >::Index’ {aka ‘long int’} [-Wsign-compare]
  153 |   for (size_t i = 0; i < x.size(); i++) {
      |                      ~~^~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp: In instantiation of ‘void stan::math::elementwise_check(const F&, const char*, const char*, const T&, const char*, const Indexings& ...) [with F = check_positive<Eigen::Matrix<double, -1, 1> >(const char*, const char*, const Eigen::Matrix<double, -1, 1>&)::<lambda(double)>; T = Eigen::Matrix<double, -1, 1>; Indexings = {}; stan::require_eigen_t<T>* <anonymous> = 0; std::enable_if_t<((Eigen::internal::traits<_Rhs>::Flags & Eigen::LinearAccessBit) || T::IsVectorAtCompileTime)>* <anonymous> = 0]’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_positive.hpp:29:20:   required from ‘void stan::math::check_positive(const char*, const char*, const T_y&) [with T_y = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/validate_diag_inv_metric.hpp:22:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:153:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase<Eigen::Matrix<double, -1, 1> >::Index’ {aka ‘long int’} [-Wsign-compare]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Matrix<double, -1, -1> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::ArrayWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Matrix<double, -1, -1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::ArrayWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Matrix<double, -1, -1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7:   required from ‘class Eigen::ArrayWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Matrix<double, -1, -1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/BooleanRedux.h:142:28:   required from ‘bool Eigen::DenseBase<Derived>::hasNaN() const [with Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Matrix<double, -1, -1> >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/BooleanRedux.h:156:40:   required from ‘bool Eigen::DenseBase<Derived>::allFinite() const [with Derived = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/covar_adaptation.hpp:31:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   56 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::ArrayWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::ArrayWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7:   required from ‘class Eigen::ArrayWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/BooleanRedux.h:142:28:   required from ‘bool Eigen::DenseBase<Derived>::hasNaN() const [with Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/BooleanRedux.h:156:40:   required from ‘bool Eigen::DenseBase<Derived>::allFinite() const [with Derived = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/var_adaptation.hpp:30:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
In file included from /home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta.hpp:70,
                 from /home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/invalid_argument.hpp:4,
                 from /home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:4,
                 from /home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/core.hpp:4,
                 from /home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim.hpp:10:
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_less_or_equal.hpp: In instantiation of ‘void stan::math::check_less_or_equal(const char*, const char*, const T_y&, const T_high&, Idxs ...) [with T_y = long unsigned int; T_high = long int; stan::require_all_stan_scalar_t<U, V>* <anonymous> = 0; Idxs = {}]’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/array_var_context.hpp:79:0:   required from ‘std::vector<long unsigned int> stan::io::array_var_context::validate_dims(const std::vector<std::__cxx11::basic_string<char> >&, T, const std::vector<std::vector<long unsigned int> >&) [with T = long int]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/array_var_context.hpp:118:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_less_or_equal.hpp:39:20: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘const long int’ [-Wsign-compare]
   39 |   if (unlikely(!(y <= high))) {
      |                 ~~~^~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/compiler_attributes.hpp:9:41: note: in definition of macro ‘unlikely’
    9 | #define unlikely(x) __builtin_expect(!!(x), 0)
      |                                         ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, int>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, int>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, int>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_difference_op<double, int>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, int>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/subtract.hpp:79:21:   required from ‘auto stan::math::subtract(const Mat&, Scal) [with Mat = Eigen::Matrix<double, -1, 1>; Scal = int; stan::require_eigen_t<T_desired>* <anonymous> = 0; stan::require_stan_scalar_t<V>* <anonymous> = 0; stan::require_all_not_st_var<Scal, Mat>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lb_free.hpp:37:29:   required from ‘auto stan::math::lb_free(T&&, L&&) [with T = Eigen::Matrix<double, -1, 1>; L = const int&; stan::require_not_std_vector_t<T_y>* <anonymous> = 0; stan::require_stan_scalar_t<V>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lub_free.hpp:52:19:   required from ‘auto stan::math::lub_free(T&&, L&&, U&&) [with T = const Eigen::Matrix<double, -1, 1>&; L = const int&; U = const double&; stan::require_not_std_vector_t<T_y>* <anonymous> = 0; stan::require_all_stan_scalar_t<L, U>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lub_free.hpp:132:32:   required from ‘auto stan::math::lub_free(std::vector<T>, const L&, const U&) [with T = Eigen::Matrix<double, -1, 1>; L = int; U = double; stan::require_all_not_std_vector_t<L, U>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/serializer.hpp:281:0:   required from ‘void stan::io::serializer<T>::write_free_lub(const L&, const U&, const S&) [with S = std::vector<Eigen::Matrix<double, -1, 1> >; L = int; U = double; T = double]’
stanExports_shrinkage.h:665:0:   required from ‘void model_shrinkage_namespace::model_shrinkage::transform_inits_impl(const stan::io::var_context&, VecVar&, std::ostream*) const [with VecVar = std::vector<double>; stan::require_vector_t<T_y>* <anonymous> = 0; std::ostream = std::basic_ostream<char>]’
stanExports_shrinkage.h:901:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   56 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, int>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, int>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, int>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:140:7:   required from ‘class Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, int>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/subtract.hpp:79:32:   required from ‘auto stan::math::subtract(const Mat&, Scal) [with Mat = Eigen::Matrix<double, -1, 1>; Scal = int; stan::require_eigen_t<T_desired>* <anonymous> = 0; stan::require_stan_scalar_t<V>* <anonymous> = 0; stan::require_all_not_st_var<Scal, Mat>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lb_free.hpp:37:29:   required from ‘auto stan::math::lb_free(T&&, L&&) [with T = Eigen::Matrix<double, -1, 1>; L = const int&; stan::require_not_std_vector_t<T_y>* <anonymous> = 0; stan::require_stan_scalar_t<V>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lub_free.hpp:52:19:   required from ‘auto stan::math::lub_free(T&&, L&&, U&&) [with T = const Eigen::Matrix<double, -1, 1>&; L = const int&; U = const double&; stan::require_not_std_vector_t<T_y>* <anonymous> = 0; stan::require_all_stan_scalar_t<L, U>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lub_free.hpp:132:32:   required from ‘auto stan::math::lub_free(std::vector<T>, const L&, const U&) [with T = Eigen::Matrix<double, -1, 1>; L = int; U = double; stan::require_all_not_std_vector_t<L, U>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/serializer.hpp:281:0:   required from ‘void stan::io::serializer<T>::write_free_lub(const L&, const U&, const S&) [with S = std::vector<Eigen::Matrix<double, -1, 1> >; L = int; U = double; T = double]’
stanExports_shrinkage.h:665:0:   required from ‘void model_shrinkage_namespace::model_shrinkage::transform_inits_impl(const stan::io::var_context&, VecVar&, std::ostream*) const [with VecVar = std::vector<double>; stan::require_vector_t<T_y>* <anonymous> = 0; std::ostream = std::basic_ostream<char>]’
stanExports_shrinkage.h:901:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, int>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::ArrayWrapper<const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, int>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::ArrayWrapper<const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, int>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7:   required from ‘class Eigen::ArrayWrapper<const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, int>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/log.hpp:66:51:   required from ‘stan::math::log<Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, int>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > > >(const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, int>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > >&)::<lambda(const auto:169&)> [with auto:169 = Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, int>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:47:25:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lb_free.hpp:37:20:   required from ‘auto stan::math::lb_free(T&&, L&&) [with T = Eigen::Matrix<double, -1, 1>; L = const int&; stan::require_not_std_vector_t<T_y>* <anonymous> = 0; stan::require_stan_scalar_t<V>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lub_free.hpp:52:19:   required from ‘auto stan::math::lub_free(T&&, L&&, U&&) [with T = const Eigen::Matrix<double, -1, 1>&; L = const int&; U = const double&; stan::require_not_std_vector_t<T_y>* <anonymous> = 0; stan::require_all_stan_scalar_t<L, U>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lub_free.hpp:132:32:   required from ‘auto stan::math::lub_free(std::vector<T>, const L&, const U&) [with T = Eigen::Matrix<double, -1, 1>; L = int; U = double; stan::require_all_not_std_vector_t<L, U>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/serializer.hpp:281:0:   required from ‘void stan::io::serializer<T>::write_free_lub(const L&, const U&, const S&) [with S = std::vector<Eigen::Matrix<double, -1, 1> >; L = int; U = double; T = double]’
stanExports_shrinkage.h:665:0:   required from ‘void model_shrinkage_namespace::model_shrinkage::transform_inits_impl(const stan::io::var_context&, VecVar&, std::ostream*) const [with VecVar = std::vector<double>; stan::require_vector_t<T_y>* <anonymous> = 0; std::ostream = std::basic_ostream<char>]’
stanExports_shrinkage.h:901:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_log_op<double>, const Eigen::ArrayWrapper<const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, int>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > > > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_log_op<double>, const Eigen::ArrayWrapper<const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, int>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_log_op<double>, const Eigen::ArrayWrapper<const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, int>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_log_op<double>, const Eigen::ArrayWrapper<const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, int>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > > >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp<Eigen::internal::scalar_log_op<double>, const Eigen::ArrayWrapper<const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, int>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/log.hpp:66:51:   required from ‘stan::math::log<Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, int>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > > >(const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, int>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > >&)::<lambda(const auto:169&)> [with auto:169 = Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, int>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:47:25:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lb_free.hpp:37:20:   required from ‘auto stan::math::lb_free(T&&, L&&) [with T = Eigen::Matrix<double, -1, 1>; L = const int&; stan::require_not_std_vector_t<T_y>* <anonymous> = 0; stan::require_stan_scalar_t<V>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lub_free.hpp:52:19:   required from ‘auto stan::math::lub_free(T&&, L&&, U&&) [with T = const Eigen::Matrix<double, -1, 1>&; L = const int&; U = const double&; stan::require_not_std_vector_t<T_y>* <anonymous> = 0; stan::require_all_stan_scalar_t<L, U>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lub_free.hpp:132:32:   required from ‘auto stan::math::lub_free(std::vector<T>, const L&, const U&) [with T = Eigen::Matrix<double, -1, 1>; L = int; U = double; stan::require_all_not_std_vector_t<L, U>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/serializer.hpp:281:0:   required from ‘void stan::io::serializer<T>::write_free_lub(const L&, const U&, const S&) [with S = std::vector<Eigen::Matrix<double, -1, 1> >; L = int; U = double; T = double]’
stanExports_shrinkage.h:665:0:   required from ‘void model_shrinkage_namespace::model_shrinkage::transform_inits_impl(const stan::io::var_context&, VecVar&, std::ostream*) const [with VecVar = std::vector<double>; stan::require_vector_t<T_y>* <anonymous> = 0; std::ostream = std::basic_ostream<char>]’
stanExports_shrinkage.h:901:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::MatrixWrapper<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_log_op<double>, const Eigen::ArrayWrapper<const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, int>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > > > > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::MatrixWrapper<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_log_op<double>, const Eigen::ArrayWrapper<const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, int>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > > > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::MatrixWrapper<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_log_op<double>, const Eigen::ArrayWrapper<const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, int>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > > > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:140:7:   required from ‘class Eigen::MatrixWrapper<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_log_op<double>, const Eigen::ArrayWrapper<const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, int>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:46:70:   required from ‘stan::math::apply_vector_unary<Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, int>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > >, void>::apply<stan::math::log<Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, int>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > > >(const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, int>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > >&)::<lambda(const auto:169&)> >(const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, int>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > >&, const stan::math::log<Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, int>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > > >(const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, int>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > >&)::<lambda(const auto:169&)>&)::<lambda(const auto:6&)> [with auto:6 = Eigen::CwiseUnaryOp<Eigen::internal::scalar_log_op<double>, const Eigen::ArrayWrapper<const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, int>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > > > >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/holder.hpp:370:41:   required by substitution of ‘template<class F, class ... Args, stan::require_plain_type_t<decltype (declval<F>()((declval<Args&>)()...))>* <anonymous> > auto stan::math::make_holder(const F&, Args&& ...) [with F = stan::math::apply_vector_unary<Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, int>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > >, void>::apply<stan::math::log<Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, int>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > > >(const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, int>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > >&)::<lambda(const auto:169&)> >(const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, int>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > >&, const stan::math::log<Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, int>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > > >(const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, int>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > >&)::<lambda(const auto:169&)>&)::<lambda(const auto:6&)>; Args = {Eigen::CwiseUnaryOp<Eigen::internal::scalar_log_op<double>, const Eigen::ArrayWrapper<const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, int>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1, 0, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1, 0, -1, 1> > > > > >}; stan::require_plain_type_t<decltype (declval<F>()((declval<Args&>)()...))>* <anonymous> = <missing>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:46:23:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lb_free.hpp:37:20:   required from ‘auto stan::math::lb_free(T&&, L&&) [with T = Eigen::Matrix<double, -1, 1>; L = const int&; stan::require_not_std_vector_t<T_y>* <anonymous> = 0; stan::require_stan_scalar_t<V>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lub_free.hpp:52:19:   required from ‘auto stan::math::lub_free(T&&, L&&, U&&) [with T = const Eigen::Matrix<double, -1, 1>&; L = const int&; U = const double&; stan::require_not_std_vector_t<T_y>* <anonymous> = 0; stan::require_all_stan_scalar_t<L, U>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lub_free.hpp:132:32:   required from ‘auto stan::math::lub_free(std::vector<T>, const L&, const U&) [with T = Eigen::Matrix<double, -1, 1>; L = int; U = double; stan::require_all_not_std_vector_t<L, U>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/serializer.hpp:281:0:   required from ‘void stan::io::serializer<T>::write_free_lub(const L&, const U&, const S&) [with S = std::vector<Eigen::Matrix<double, -1, 1> >; L = int; U = double; T = double]’
stanExports_shrinkage.h:665:0:   required from ‘void model_shrinkage_namespace::model_shrinkage::transform_inits_impl(const stan::io::var_context&, VecVar&, std::ostream*) const [with VecVar = std::vector<double>; stan::require_vector_t<T_y>* <anonymous> = 0; std::ostream = std::basic_ostream<char>]’
stanExports_shrinkage.h:901:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/subtract.hpp:62:13:   required from ‘auto stan::math::subtract(Scal, const Mat&) [with Scal = double; Mat = Eigen::Matrix<double, -1, 1>; stan::require_stan_scalar_t<T>* <anonymous> = 0; stan::require_eigen_t<T>* <anonymous> = 0; stan::require_all_not_st_var<Scal, Mat>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/ub_free.hpp:43:29:   required from ‘auto stan::math::ub_free(T&&, U&&) [with T = Eigen::Matrix<double, -1, 1>; U = const double&; stan::require_not_std_vector_t<T_y>* <anonymous> = 0; stan::require_stan_scalar_t<V>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lub_free.hpp:54:19:   required from ‘auto stan::math::lub_free(T&&, L&&, U&&) [with T = const Eigen::Matrix<double, -1, 1>&; L = const int&; U = const double&; stan::require_not_std_vector_t<T_y>* <anonymous> = 0; stan::require_all_stan_scalar_t<L, U>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lub_free.hpp:132:32:   required from ‘auto stan::math::lub_free(std::vector<T>, const L&, const U&) [with T = Eigen::Matrix<double, -1, 1>; L = int; U = double; stan::require_all_not_std_vector_t<L, U>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/serializer.hpp:281:0:   required from ‘void stan::io::serializer<T>::write_free_lub(const L&, const U&, const S&) [with S = std::vector<Eigen::Matrix<double, -1, 1> >; L = int; U = double; T = double]’
stanExports_shrinkage.h:665:0:   required from ‘void model_shrinkage_namespace::model_shrinkage::transform_inits_impl(const stan::io::var_context&, VecVar&, std::ostream*) const [with VecVar = std::vector<double>; stan::require_vector_t<T_y>* <anonymous> = 0; std::ostream = std::basic_ostream<char>]’
stanExports_shrinkage.h:901:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:140:7:   required from ‘class Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/subtract.hpp:62:32:   required from ‘auto stan::math::subtract(Scal, const Mat&) [with Scal = double; Mat = Eigen::Matrix<double, -1, 1>; stan::require_stan_scalar_t<T>* <anonymous> = 0; stan::require_eigen_t<T>* <anonymous> = 0; stan::require_all_not_st_var<Scal, Mat>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/ub_free.hpp:43:29:   required from ‘auto stan::math::ub_free(T&&, U&&) [with T = Eigen::Matrix<double, -1, 1>; U = const double&; stan::require_not_std_vector_t<T_y>* <anonymous> = 0; stan::require_stan_scalar_t<V>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lub_free.hpp:54:19:   required from ‘auto stan::math::lub_free(T&&, L&&, U&&) [with T = const Eigen::Matrix<double, -1, 1>&; L = const int&; U = const double&; stan::require_not_std_vector_t<T_y>* <anonymous> = 0; stan::require_all_stan_scalar_t<L, U>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lub_free.hpp:132:32:   required from ‘auto stan::math::lub_free(std::vector<T>, const L&, const U&) [with T = Eigen::Matrix<double, -1, 1>; L = int; U = double; stan::require_all_not_std_vector_t<L, U>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/serializer.hpp:281:0:   required from ‘void stan::io::serializer<T>::write_free_lub(const L&, const U&, const S&) [with S = std::vector<Eigen::Matrix<double, -1, 1> >; L = int; U = double; T = double]’
stanExports_shrinkage.h:665:0:   required from ‘void model_shrinkage_namespace::model_shrinkage::transform_inits_impl(const stan::io::var_context&, VecVar&, std::ostream*) const [with VecVar = std::vector<double>; stan::require_vector_t<T_y>* <anonymous> = 0; std::ostream = std::basic_ostream<char>]’
stanExports_shrinkage.h:901:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::ArrayWrapper<const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::ArrayWrapper<const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7:   required from ‘class Eigen::ArrayWrapper<const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/log.hpp:66:51:   required from ‘stan::math::log<Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > > >(const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > >&)::<lambda(const auto:169&)> [with auto:169 = Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:47:25:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/ub_free.hpp:43:20:   required from ‘auto stan::math::ub_free(T&&, U&&) [with T = Eigen::Matrix<double, -1, 1>; U = const double&; stan::require_not_std_vector_t<T_y>* <anonymous> = 0; stan::require_stan_scalar_t<V>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lub_free.hpp:54:19:   required from ‘auto stan::math::lub_free(T&&, L&&, U&&) [with T = const Eigen::Matrix<double, -1, 1>&; L = const int&; U = const double&; stan::require_not_std_vector_t<T_y>* <anonymous> = 0; stan::require_all_stan_scalar_t<L, U>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lub_free.hpp:132:32:   required from ‘auto stan::math::lub_free(std::vector<T>, const L&, const U&) [with T = Eigen::Matrix<double, -1, 1>; L = int; U = double; stan::require_all_not_std_vector_t<L, U>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/serializer.hpp:281:0:   required from ‘void stan::io::serializer<T>::write_free_lub(const L&, const U&, const S&) [with S = std::vector<Eigen::Matrix<double, -1, 1> >; L = int; U = double; T = double]’
stanExports_shrinkage.h:665:0:   required from ‘void model_shrinkage_namespace::model_shrinkage::transform_inits_impl(const stan::io::var_context&, VecVar&, std::ostream*) const [with VecVar = std::vector<double>; stan::require_vector_t<T_y>* <anonymous> = 0; std::ostream = std::basic_ostream<char>]’
stanExports_shrinkage.h:901:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_log_op<double>, const Eigen::ArrayWrapper<const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > > > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_log_op<double>, const Eigen::ArrayWrapper<const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_log_op<double>, const Eigen::ArrayWrapper<const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_log_op<double>, const Eigen::ArrayWrapper<const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > > >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp<Eigen::internal::scalar_log_op<double>, const Eigen::ArrayWrapper<const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/log.hpp:66:51:   required from ‘stan::math::log<Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > > >(const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > >&)::<lambda(const auto:169&)> [with auto:169 = Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:47:25:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/ub_free.hpp:43:20:   required from ‘auto stan::math::ub_free(T&&, U&&) [with T = Eigen::Matrix<double, -1, 1>; U = const double&; stan::require_not_std_vector_t<T_y>* <anonymous> = 0; stan::require_stan_scalar_t<V>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lub_free.hpp:54:19:   required from ‘auto stan::math::lub_free(T&&, L&&, U&&) [with T = const Eigen::Matrix<double, -1, 1>&; L = const int&; U = const double&; stan::require_not_std_vector_t<T_y>* <anonymous> = 0; stan::require_all_stan_scalar_t<L, U>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lub_free.hpp:132:32:   required from ‘auto stan::math::lub_free(std::vector<T>, const L&, const U&) [with T = Eigen::Matrix<double, -1, 1>; L = int; U = double; stan::require_all_not_std_vector_t<L, U>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/serializer.hpp:281:0:   required from ‘void stan::io::serializer<T>::write_free_lub(const L&, const U&, const S&) [with S = std::vector<Eigen::Matrix<double, -1, 1> >; L = int; U = double; T = double]’
stanExports_shrinkage.h:665:0:   required from ‘void model_shrinkage_namespace::model_shrinkage::transform_inits_impl(const stan::io::var_context&, VecVar&, std::ostream*) const [with VecVar = std::vector<double>; stan::require_vector_t<T_y>* <anonymous> = 0; std::ostream = std::basic_ostream<char>]’
stanExports_shrinkage.h:901:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::MatrixWrapper<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_log_op<double>, const Eigen::ArrayWrapper<const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > > > > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::MatrixWrapper<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_log_op<double>, const Eigen::ArrayWrapper<const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > > > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::MatrixWrapper<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_log_op<double>, const Eigen::ArrayWrapper<const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > > > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:140:7:   required from ‘class Eigen::MatrixWrapper<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_log_op<double>, const Eigen::ArrayWrapper<const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:46:70:   required from ‘stan::math::apply_vector_unary<Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > >, void>::apply<stan::math::log<Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > > >(const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > >&)::<lambda(const auto:169&)> >(const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > >&, const stan::math::log<Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > > >(const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > >&)::<lambda(const auto:169&)>&)::<lambda(const auto:6&)> [with auto:6 = Eigen::CwiseUnaryOp<Eigen::internal::scalar_log_op<double>, const Eigen::ArrayWrapper<const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > > > >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/holder.hpp:370:41:   required by substitution of ‘template<class F, class ... Args, stan::require_plain_type_t<decltype (declval<F>()((declval<Args&>)()...))>* <anonymous> > auto stan::math::make_holder(const F&, Args&& ...) [with F = stan::math::apply_vector_unary<Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > >, void>::apply<stan::math::log<Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > > >(const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > >&)::<lambda(const auto:169&)> >(const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > >&, const stan::math::log<Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > > >(const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > >&)::<lambda(const auto:169&)>&)::<lambda(const auto:6&)>; Args = {Eigen::CwiseUnaryOp<Eigen::internal::scalar_log_op<double>, const Eigen::ArrayWrapper<const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1, 0, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1, 0, -1, 1> > > > > >}; stan::require_plain_type_t<decltype (declval<F>()((declval<Args&>)()...))>* <anonymous> = <missing>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:46:23:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/ub_free.hpp:43:20:   required from ‘auto stan::math::ub_free(T&&, U&&) [with T = Eigen::Matrix<double, -1, 1>; U = const double&; stan::require_not_std_vector_t<T_y>* <anonymous> = 0; stan::require_stan_scalar_t<V>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lub_free.hpp:54:19:   required from ‘auto stan::math::lub_free(T&&, L&&, U&&) [with T = const Eigen::Matrix<double, -1, 1>&; L = const int&; U = const double&; stan::require_not_std_vector_t<T_y>* <anonymous> = 0; stan::require_all_stan_scalar_t<L, U>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lub_free.hpp:132:32:   required from ‘auto stan::math::lub_free(std::vector<T>, const L&, const U&) [with T = Eigen::Matrix<double, -1, 1>; L = int; U = double; stan::require_all_not_std_vector_t<L, U>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/serializer.hpp:281:0:   required from ‘void stan::io::serializer<T>::write_free_lub(const L&, const U&, const S&) [with S = std::vector<Eigen::Matrix<double, -1, 1> >; L = int; U = double; T = double]’
stanExports_shrinkage.h:665:0:   required from ‘void model_shrinkage_namespace::model_shrinkage::transform_inits_impl(const stan::io::var_context&, VecVar&, std::ostream*) const [with VecVar = std::vector<double>; stan::require_vector_t<T_y>* <anonymous> = 0; std::ostream = std::basic_ostream<char>]’
stanExports_shrinkage.h:901:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::ArrayWrapper<const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, int>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::ArrayWrapper<const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, int>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::ArrayWrapper<const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, int>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::ArrayWrapper<const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, int>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::ArrayWrapper<const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, int>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/divide.hpp:47:33:   required from ‘auto stan::math::divide(const T1&, const T2&) [with T1 = Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, int>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > >; T2 = double; stan::require_any_eigen_t<T1, T2>* <anonymous> = 0; stan::require_all_not_st_var<Mat1, Mat2>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lub_free.hpp:59:29:   required from ‘auto stan::math::lub_free(T&&, L&&, U&&) [with T = const Eigen::Matrix<double, -1, 1>&; L = const int&; U = const double&; stan::require_not_std_vector_t<T_y>* <anonymous> = 0; stan::require_all_stan_scalar_t<L, U>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lub_free.hpp:132:32:   required from ‘auto stan::math::lub_free(std::vector<T>, const L&, const U&) [with T = Eigen::Matrix<double, -1, 1>; L = int; U = double; stan::require_all_not_std_vector_t<L, U>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/serializer.hpp:281:0:   required from ‘void stan::io::serializer<T>::write_free_lub(const L&, const U&, const S&) [with S = std::vector<Eigen::Matrix<double, -1, 1> >; L = int; U = double; T = double]’
stanExports_shrinkage.h:665:0:   required from ‘void model_shrinkage_namespace::model_shrinkage::transform_inits_impl(const stan::io::var_context&, VecVar&, std::ostream*) const [with VecVar = std::vector<double>; stan::require_vector_t<T_y>* <anonymous> = 0; std::ostream = std::basic_ostream<char>]’
stanExports_shrinkage.h:901:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::ArrayWrapper<const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, int>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::ArrayWrapper<const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, int>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::ArrayWrapper<const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, int>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:140:7:   required from ‘class Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::ArrayWrapper<const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, int>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/divide.hpp:47:64:   required from ‘auto stan::math::divide(const T1&, const T2&) [with T1 = Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, int>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > >; T2 = double; stan::require_any_eigen_t<T1, T2>* <anonymous> = 0; stan::require_all_not_st_var<Mat1, Mat2>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lub_free.hpp:59:29:   required from ‘auto stan::math::lub_free(T&&, L&&, U&&) [with T = const Eigen::Matrix<double, -1, 1>&; L = const int&; U = const double&; stan::require_not_std_vector_t<T_y>* <anonymous> = 0; stan::require_all_stan_scalar_t<L, U>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lub_free.hpp:132:32:   required from ‘auto stan::math::lub_free(std::vector<T>, const L&, const U&) [with T = Eigen::Matrix<double, -1, 1>; L = int; U = double; stan::require_all_not_std_vector_t<L, U>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/serializer.hpp:281:0:   required from ‘void stan::io::serializer<T>::write_free_lub(const L&, const U&, const S&) [with S = std::vector<Eigen::Matrix<double, -1, 1> >; L = int; U = double; T = double]’
stanExports_shrinkage.h:665:0:   required from ‘void model_shrinkage_namespace::model_shrinkage::transform_inits_impl(const stan::io::var_context&, VecVar&, std::ostream*) const [with VecVar = std::vector<double>; stan::require_vector_t<T_y>* <anonymous> = 0; std::ostream = std::basic_ostream<char>]’
stanExports_shrinkage.h:901:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/logit.hpp:113:56:   required from ‘stan::math::logit<Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::ArrayWrapper<const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, int>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > > >(const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::ArrayWrapper<const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, int>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >&)::<lambda(const auto:340&)>::<lambda(const auto:341&)> [with auto:341 = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:47:25:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/logit.hpp:109:21:   required from ‘auto stan::math::logit(const Container&) [with Container = Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::ArrayWrapper<const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, int>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >; stan::require_container_st<std::is_arithmetic, Container>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lub_free.hpp:59:22:   required from ‘auto stan::math::lub_free(T&&, L&&, U&&) [with T = const Eigen::Matrix<double, -1, 1>&; L = const int&; U = const double&; stan::require_not_std_vector_t<T_y>* <anonymous> = 0; stan::require_all_stan_scalar_t<L, U>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lub_free.hpp:132:32:   required from ‘auto stan::math::lub_free(std::vector<T>, const L&, const U&) [with T = Eigen::Matrix<double, -1, 1>; L = int; U = double; stan::require_all_not_std_vector_t<L, U>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/serializer.hpp:281:0:   required from ‘void stan::io::serializer<T>::write_free_lub(const L&, const U&, const S&) [with S = std::vector<Eigen::Matrix<double, -1, 1> >; L = int; U = double; T = double]’
stanExports_shrinkage.h:665:0:   required from ‘void model_shrinkage_namespace::model_shrinkage::transform_inits_impl(const stan::io::var_context&, VecVar&, std::ostream*) const [with VecVar = std::vector<double>; stan::require_vector_t<T_y>* <anonymous> = 0; std::ostream = std::basic_ostream<char>]’
stanExports_shrinkage.h:901:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/logit.hpp:113:51:   required from ‘stan::math::logit<Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::ArrayWrapper<const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, int>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > > >(const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::ArrayWrapper<const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, int>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >&)::<lambda(const auto:340&)>::<lambda(const auto:341&)> [with auto:341 = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:47:25:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/logit.hpp:109:21:   required from ‘auto stan::math::logit(const Container&) [with Container = Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::ArrayWrapper<const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, int>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >; stan::require_container_st<std::is_arithmetic, Container>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lub_free.hpp:59:22:   required from ‘auto stan::math::lub_free(T&&, L&&, U&&) [with T = const Eigen::Matrix<double, -1, 1>&; L = const int&; U = const double&; stan::require_not_std_vector_t<T_y>* <anonymous> = 0; stan::require_all_stan_scalar_t<L, U>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lub_free.hpp:132:32:   required from ‘auto stan::math::lub_free(std::vector<T>, const L&, const U&) [with T = Eigen::Matrix<double, -1, 1>; L = int; U = double; stan::require_all_not_std_vector_t<L, U>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/serializer.hpp:281:0:   required from ‘void stan::io::serializer<T>::write_free_lub(const L&, const U&, const S&) [with S = std::vector<Eigen::Matrix<double, -1, 1> >; L = int; U = double; T = double]’
stanExports_shrinkage.h:665:0:   required from ‘void model_shrinkage_namespace::model_shrinkage::transform_inits_impl(const stan::io::var_context&, VecVar&, std::ostream*) const [with VecVar = std::vector<double>; stan::require_vector_t<T_y>* <anonymous> = 0; std::ostream = std::basic_ostream<char>]’
stanExports_shrinkage.h:901:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_log_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_log_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_log_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_log_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp<Eigen::internal::scalar_log_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/logit.hpp:113:74:   required from ‘stan::math::logit<Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::ArrayWrapper<const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, int>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > > >(const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::ArrayWrapper<const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, int>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >&)::<lambda(const auto:340&)>::<lambda(const auto:341&)> [with auto:341 = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:47:25:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/logit.hpp:109:21:   required from ‘auto stan::math::logit(const Container&) [with Container = Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::ArrayWrapper<const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, int>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >; stan::require_container_st<std::is_arithmetic, Container>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lub_free.hpp:59:22:   required from ‘auto stan::math::lub_free(T&&, L&&, U&&) [with T = const Eigen::Matrix<double, -1, 1>&; L = const int&; U = const double&; stan::require_not_std_vector_t<T_y>* <anonymous> = 0; stan::require_all_stan_scalar_t<L, U>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lub_free.hpp:132:32:   required from ‘auto stan::math::lub_free(std::vector<T>, const L&, const U&) [with T = Eigen::Matrix<double, -1, 1>; L = int; U = double; stan::require_all_not_std_vector_t<L, U>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/serializer.hpp:281:0:   required from ‘void stan::io::serializer<T>::write_free_lub(const L&, const U&, const S&) [with S = std::vector<Eigen::Matrix<double, -1, 1> >; L = int; U = double; T = double]’
stanExports_shrinkage.h:665:0:   required from ‘void model_shrinkage_namespace::model_shrinkage::transform_inits_impl(const stan::io::var_context&, VecVar&, std::ostream*) const [with VecVar = std::vector<double>; stan::require_vector_t<T_y>* <anonymous> = 0; std::ostream = std::basic_ostream<char>]’
stanExports_shrinkage.h:901:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::MatrixWrapper<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_log_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > > > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::MatrixWrapper<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_log_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::MatrixWrapper<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_log_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:140:7:   required from ‘class Eigen::MatrixWrapper<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_log_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:46:70:   required from ‘stan::math::apply_vector_unary<Eigen::Matrix<double, -1, 1>, void>::apply<stan::math::logit<Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::ArrayWrapper<const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, int>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > > >(const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::ArrayWrapper<const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, int>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >&)::<lambda(const auto:340&)>::<lambda(const auto:341&)> >(const Eigen::Matrix<double, -1, 1>&, const stan::math::logit<Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::ArrayWrapper<const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, int>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > > >(const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::ArrayWrapper<const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, int>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >&)::<lambda(const auto:340&)>::<lambda(const auto:341&)>&)::<lambda(const auto:6&)> [with auto:6 = Eigen::CwiseUnaryOp<Eigen::internal::scalar_log_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > > >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/holder.hpp:370:41:   required by substitution of ‘template<class F, class ... Args, stan::require_plain_type_t<decltype (declval<F>()((declval<Args&>)()...))>* <anonymous> > auto stan::math::make_holder(const F&, Args&& ...) [with F = stan::math::apply_vector_unary<Eigen::Matrix<double, -1, 1>, void>::apply<stan::math::logit<Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::ArrayWrapper<const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, int>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > > >(const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::ArrayWrapper<const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, int>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >&)::<lambda(const auto:340&)>::<lambda(const auto:341&)> >(const Eigen::Matrix<double, -1, 1>&, const stan::math::logit<Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::ArrayWrapper<const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, int>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > > >(const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::ArrayWrapper<const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, int>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >&)::<lambda(const auto:340&)>::<lambda(const auto:341&)>&)::<lambda(const auto:6&)>; Args = {Eigen::CwiseUnaryOp<Eigen::internal::scalar_log_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1, 0, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1, 0, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1, 0, -1, 1> > > > >}; stan::require_plain_type_t<decltype (declval<F>()((declval<Args&>)()...))>* <anonymous> = <missing>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:46:23:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/logit.hpp:109:21:   required from ‘auto stan::math::logit(const Container&) [with Container = Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::ArrayWrapper<const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, int>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >; stan::require_container_st<std::is_arithmetic, Container>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lub_free.hpp:59:22:   required from ‘auto stan::math::lub_free(T&&, L&&, U&&) [with T = const Eigen::Matrix<double, -1, 1>&; L = const int&; U = const double&; stan::require_not_std_vector_t<T_y>* <anonymous> = 0; stan::require_all_stan_scalar_t<L, U>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lub_free.hpp:132:32:   required from ‘auto stan::math::lub_free(std::vector<T>, const L&, const U&) [with T = Eigen::Matrix<double, -1, 1>; L = int; U = double; stan::require_all_not_std_vector_t<L, U>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/serializer.hpp:281:0:   required from ‘void stan::io::serializer<T>::write_free_lub(const L&, const U&, const S&) [with S = std::vector<Eigen::Matrix<double, -1, 1> >; L = int; U = double; T = double]’
stanExports_shrinkage.h:665:0:   required from ‘void model_shrinkage_namespace::model_shrinkage::transform_inits_impl(const stan::io::var_context&, VecVar&, std::ostream*) const [with VecVar = std::vector<double>; stan::require_vector_t<T_y>* <anonymous> = 0; std::ostream = std::basic_ostream<char>]’
stanExports_shrinkage.h:901:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<stan::math::Holder<Eigen::MatrixWrapper<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_log_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > > > >, Eigen::Matrix<double, -1, 1, 0, -1, 1> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<stan::math::Holder<Eigen::MatrixWrapper<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_log_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > > > >, Eigen::Matrix<double, -1, 1, 0, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<stan::math::Holder<Eigen::MatrixWrapper<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_log_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > > > >, Eigen::Matrix<double, -1, 1, 0, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/holder.hpp:115:7:   required from ‘class stan::math::Holder<Eigen::MatrixWrapper<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_log_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > > > >, Eigen::Matrix<double, -1, 1, 0, -1, 1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/holder.hpp:312:16:   required from ‘auto stan::math::internal::make_holder_impl_construct_object(T&&, std::index_sequence<Is ...>, const std::tuple<Args* ...>&) [with T = Eigen::MatrixWrapper<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_log_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > > > >; long unsigned int ...Is = {0}; Args = {Eigen::Matrix<double, -1, 1, 0, -1, 1>}; std::index_sequence<Is ...> = std::integer_sequence<long unsigned int, 0>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/holder.hpp:330:43:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/logit.hpp:109:21:   required from ‘auto stan::math::logit(const Container&) [with Container = Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::ArrayWrapper<const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, int>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >; stan::require_container_st<std::is_arithmetic, Container>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lub_free.hpp:59:22:   required from ‘auto stan::math::lub_free(T&&, L&&, U&&) [with T = const Eigen::Matrix<double, -1, 1>&; L = const int&; U = const double&; stan::require_not_std_vector_t<T_y>* <anonymous> = 0; stan::require_all_stan_scalar_t<L, U>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lub_free.hpp:132:32:   required from ‘auto stan::math::lub_free(std::vector<T>, const L&, const U&) [with T = Eigen::Matrix<double, -1, 1>; L = int; U = double; stan::require_all_not_std_vector_t<L, U>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/serializer.hpp:281:0:   required from ‘void stan::io::serializer<T>::write_free_lub(const L&, const U&, const S&) [with S = std::vector<Eigen::Matrix<double, -1, 1> >; L = int; U = double; T = double]’
stanExports_shrinkage.h:665:0:   required from ‘void model_shrinkage_namespace::model_shrinkage::transform_inits_impl(const stan::io::var_context&, VecVar&, std::ostream*) const [with VecVar = std::vector<double>; stan::require_vector_t<T_y>* <anonymous> = 0; std::ostream = std::basic_ostream<char>]’
stanExports_shrinkage.h:901:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
In file included from /home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun.hpp:217,
                 from /home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim.hpp:14:
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lub_free.hpp: In instantiation of ‘auto stan::math::lub_free(std::vector<T>, const L&, const U&) [with T = Eigen::Matrix<double, -1, 1>; L = int; U = double; stan::require_all_not_std_vector_t<L, U>* <anonymous> = 0]’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/serializer.hpp:281:0:   required from ‘void stan::io::serializer<T>::write_free_lub(const L&, const U&, const S&) [with S = std::vector<Eigen::Matrix<double, -1, 1> >; L = int; U = double; T = double]’
stanExports_shrinkage.h:665:0:   required from ‘void model_shrinkage_namespace::model_shrinkage::transform_inits_impl(const stan::io::var_context&, VecVar&, std::ostream*) const [with VecVar = std::vector<double>; stan::require_vector_t<T_y>* <anonymous> = 0; std::ostream = std::basic_ostream<char>]’
stanExports_shrinkage.h:901:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lub_free.hpp:133:30: warning: comparison of integer expressions of different signedness: ‘Eigen::Index’ {aka ‘long int’} and ‘std::vector<Eigen::Matrix<double, -1, 1> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  133 |   for (Eigen::Index i = 0; i < y.size(); ++i) {
      |                            ~~^~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:140:7:   required from ‘class Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/subtract.hpp:62:32:   required from ‘auto stan::math::subtract(Scal, const Mat&) [with Scal = int; Mat = Eigen::Matrix<double, -1, 1>; stan::require_stan_scalar_t<T>* <anonymous> = 0; stan::require_eigen_t<T>* <anonymous> = 0; stan::require_all_not_st_var<Scal, Mat>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/ub_free.hpp:43:29:   required from ‘auto stan::math::ub_free(T&&, U&&) [with T = Eigen::Matrix<double, -1, 1>; U = const int&; stan::require_not_std_vector_t<T_y>* <anonymous> = 0; stan::require_stan_scalar_t<V>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lub_free.hpp:54:19:   required from ‘auto stan::math::lub_free(T&&, L&&, U&&) [with T = const Eigen::Matrix<double, -1, 1>&; L = const int&; U = const int&; stan::require_not_std_vector_t<T_y>* <anonymous> = 0; stan::require_all_stan_scalar_t<L, U>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lub_free.hpp:132:32:   required from ‘auto stan::math::lub_free(std::vector<T>, const L&, const U&) [with T = Eigen::Matrix<double, -1, 1>; L = int; U = int; stan::require_all_not_std_vector_t<L, U>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/serializer.hpp:281:0:   required from ‘void stan::io::serializer<T>::write_free_lub(const L&, const U&, const S&) [with S = std::vector<Eigen::Matrix<double, -1, 1> >; L = int; U = int; T = double]’
stanExports_shrinkage.h:688:0:   required from ‘void model_shrinkage_namespace::model_shrinkage::transform_inits_impl(const stan::io::var_context&, VecVar&, std::ostream*) const [with VecVar = std::vector<double>; stan::require_vector_t<T_y>* <anonymous> = 0; std::ostream = std::basic_ostream<char>]’
stanExports_shrinkage.h:901:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   56 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::ArrayWrapper<const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::ArrayWrapper<const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7:   required from ‘class Eigen::ArrayWrapper<const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/log.hpp:66:51:   required from ‘stan::math::log<Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > > >(const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > >&)::<lambda(const auto:169&)> [with auto:169 = Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:47:25:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/ub_free.hpp:43:20:   required from ‘auto stan::math::ub_free(T&&, U&&) [with T = Eigen::Matrix<double, -1, 1>; U = const int&; stan::require_not_std_vector_t<T_y>* <anonymous> = 0; stan::require_stan_scalar_t<V>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lub_free.hpp:54:19:   required from ‘auto stan::math::lub_free(T&&, L&&, U&&) [with T = const Eigen::Matrix<double, -1, 1>&; L = const int&; U = const int&; stan::require_not_std_vector_t<T_y>* <anonymous> = 0; stan::require_all_stan_scalar_t<L, U>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lub_free.hpp:132:32:   required from ‘auto stan::math::lub_free(std::vector<T>, const L&, const U&) [with T = Eigen::Matrix<double, -1, 1>; L = int; U = int; stan::require_all_not_std_vector_t<L, U>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/serializer.hpp:281:0:   required from ‘void stan::io::serializer<T>::write_free_lub(const L&, const U&, const S&) [with S = std::vector<Eigen::Matrix<double, -1, 1> >; L = int; U = int; T = double]’
stanExports_shrinkage.h:688:0:   required from ‘void model_shrinkage_namespace::model_shrinkage::transform_inits_impl(const stan::io::var_context&, VecVar&, std::ostream*) const [with VecVar = std::vector<double>; stan::require_vector_t<T_y>* <anonymous> = 0; std::ostream = std::basic_ostream<char>]’
stanExports_shrinkage.h:901:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_log_op<double>, const Eigen::ArrayWrapper<const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > > > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_log_op<double>, const Eigen::ArrayWrapper<const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_log_op<double>, const Eigen::ArrayWrapper<const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_log_op<double>, const Eigen::ArrayWrapper<const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > > >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp<Eigen::internal::scalar_log_op<double>, const Eigen::ArrayWrapper<const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/log.hpp:66:51:   required from ‘stan::math::log<Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > > >(const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > >&)::<lambda(const auto:169&)> [with auto:169 = Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:47:25:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/ub_free.hpp:43:20:   required from ‘auto stan::math::ub_free(T&&, U&&) [with T = Eigen::Matrix<double, -1, 1>; U = const int&; stan::require_not_std_vector_t<T_y>* <anonymous> = 0; stan::require_stan_scalar_t<V>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lub_free.hpp:54:19:   required from ‘auto stan::math::lub_free(T&&, L&&, U&&) [with T = const Eigen::Matrix<double, -1, 1>&; L = const int&; U = const int&; stan::require_not_std_vector_t<T_y>* <anonymous> = 0; stan::require_all_stan_scalar_t<L, U>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lub_free.hpp:132:32:   required from ‘auto stan::math::lub_free(std::vector<T>, const L&, const U&) [with T = Eigen::Matrix<double, -1, 1>; L = int; U = int; stan::require_all_not_std_vector_t<L, U>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/serializer.hpp:281:0:   required from ‘void stan::io::serializer<T>::write_free_lub(const L&, const U&, const S&) [with S = std::vector<Eigen::Matrix<double, -1, 1> >; L = int; U = int; T = double]’
stanExports_shrinkage.h:688:0:   required from ‘void model_shrinkage_namespace::model_shrinkage::transform_inits_impl(const stan::io::var_context&, VecVar&, std::ostream*) const [with VecVar = std::vector<double>; stan::require_vector_t<T_y>* <anonymous> = 0; std::ostream = std::basic_ostream<char>]’
stanExports_shrinkage.h:901:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::MatrixWrapper<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_log_op<double>, const Eigen::ArrayWrapper<const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > > > > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::MatrixWrapper<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_log_op<double>, const Eigen::ArrayWrapper<const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > > > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::MatrixWrapper<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_log_op<double>, const Eigen::ArrayWrapper<const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > > > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:140:7:   required from ‘class Eigen::MatrixWrapper<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_log_op<double>, const Eigen::ArrayWrapper<const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:46:70:   required from ‘stan::math::apply_vector_unary<Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > >, void>::apply<stan::math::log<Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > > >(const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > >&)::<lambda(const auto:169&)> >(const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > >&, const stan::math::log<Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > > >(const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > >&)::<lambda(const auto:169&)>&)::<lambda(const auto:6&)> [with auto:6 = Eigen::CwiseUnaryOp<Eigen::internal::scalar_log_op<double>, const Eigen::ArrayWrapper<const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > > > >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/holder.hpp:370:41:   required by substitution of ‘template<class F, class ... Args, stan::require_plain_type_t<decltype (declval<F>()((declval<Args&>)()...))>* <anonymous> > auto stan::math::make_holder(const F&, Args&& ...) [with F = stan::math::apply_vector_unary<Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > >, void>::apply<stan::math::log<Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > > >(const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > >&)::<lambda(const auto:169&)> >(const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > >&, const stan::math::log<Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > > >(const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > >&)::<lambda(const auto:169&)>&)::<lambda(const auto:6&)>; Args = {Eigen::CwiseUnaryOp<Eigen::internal::scalar_log_op<double>, const Eigen::ArrayWrapper<const Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1, 0, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1, 0, -1, 1> > > > > >}; stan::require_plain_type_t<decltype (declval<F>()((declval<Args&>)()...))>* <anonymous> = <missing>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:46:23:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/ub_free.hpp:43:20:   required from ‘auto stan::math::ub_free(T&&, U&&) [with T = Eigen::Matrix<double, -1, 1>; U = const int&; stan::require_not_std_vector_t<T_y>* <anonymous> = 0; stan::require_stan_scalar_t<V>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lub_free.hpp:54:19:   required from ‘auto stan::math::lub_free(T&&, L&&, U&&) [with T = const Eigen::Matrix<double, -1, 1>&; L = const int&; U = const int&; stan::require_not_std_vector_t<T_y>* <anonymous> = 0; stan::require_all_stan_scalar_t<L, U>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lub_free.hpp:132:32:   required from ‘auto stan::math::lub_free(std::vector<T>, const L&, const U&) [with T = Eigen::Matrix<double, -1, 1>; L = int; U = int; stan::require_all_not_std_vector_t<L, U>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/serializer.hpp:281:0:   required from ‘void stan::io::serializer<T>::write_free_lub(const L&, const U&, const S&) [with S = std::vector<Eigen::Matrix<double, -1, 1> >; L = int; U = int; T = double]’
stanExports_shrinkage.h:688:0:   required from ‘void model_shrinkage_namespace::model_shrinkage::transform_inits_impl(const stan::io::var_context&, VecVar&, std::ostream*) const [with VecVar = std::vector<double>; stan::require_vector_t<T_y>* <anonymous> = 0; std::ostream = std::basic_ostream<char>]’
stanExports_shrinkage.h:901:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lub_free.hpp: In instantiation of ‘auto stan::math::lub_free(std::vector<T>, const L&, const U&) [with T = Eigen::Matrix<double, -1, 1>; L = int; U = int; stan::require_all_not_std_vector_t<L, U>* <anonymous> = 0]’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/serializer.hpp:281:0:   required from ‘void stan::io::serializer<T>::write_free_lub(const L&, const U&, const S&) [with S = std::vector<Eigen::Matrix<double, -1, 1> >; L = int; U = int; T = double]’
stanExports_shrinkage.h:688:0:   required from ‘void model_shrinkage_namespace::model_shrinkage::transform_inits_impl(const stan::io::var_context&, VecVar&, std::ostream*) const [with VecVar = std::vector<double>; stan::require_vector_t<T_y>* <anonymous> = 0; std::ostream = std::basic_ostream<char>]’
stanExports_shrinkage.h:901:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lub_free.hpp:133:30: warning: comparison of integer expressions of different signedness: ‘Eigen::Index’ {aka ‘long int’} and ‘std::vector<Eigen::Matrix<double, -1, 1> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  133 |   for (Eigen::Index i = 0; i < y.size(); ++i) {
      |                            ~~^~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/standalone_gqs.hpp: In instantiation of ‘int stan::services::standalone_generate(const Model&, const Eigen::MatrixXd&, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage; Eigen::MatrixXd = Eigen::Matrix<double, -1, -1>]’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1253:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::standalone_gqs(SEXP, SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:30:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/standalone_gqs.hpp:55: warning: comparison of integer expressions of different signedness: ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} and ‘Eigen::Index’ {aka ‘long int’} [-Wsign-compare]
   55 |   if (p_names.size() != draws.cols()) {
      | 
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/standalone_gqs.hpp:71: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::Index’ {aka ‘long int’} [-Wsign-compare]
   71 |   for (size_t i = 0; i < draws.rows(); ++i) {
      | 
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Matrix<double, -1, -1>, 1, -1, false>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Matrix<double, -1, -1>, 1, -1, false>, 2>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Block<const Eigen::Matrix<double, -1, -1>, 1, -1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Block<const Eigen::Matrix<double, -1, -1>, 1, -1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Block<const Eigen::Matrix<double, -1, -1>, 1, -1, false>, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7:   required from ‘class Eigen::internal::BlockImpl_dense<const Eigen::Matrix<double, -1, -1>, 1, -1, false, true>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   required from ‘class Eigen::BlockImpl<const Eigen::Matrix<double, -1, -1>, 1, -1, false, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81:   required from ‘class Eigen::Block<const Eigen::Matrix<double, -1, -1>, 1, -1, false>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/standalone_gqs.hpp:72:0:   required from ‘int stan::services::standalone_generate(const Model&, const Eigen::MatrixXd&, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage; Eigen::MatrixXd = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1253:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::standalone_gqs(SEXP, SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:30:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   56 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
In file included from /home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/assert.hpp:35,
                 from /home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept_check.hpp:20,
                 from /home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/range/concepts.hpp:19,
                 from /home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/range/size_type.hpp:20,
                 from /home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/range/size.hpp:21,
                 from /home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/range/functions.hpp:20,
                 from /home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/range.hpp:18,
                 from /home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/numeric/odeint/util/resize.hpp:22:
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::constraint<Model>::failed() [with Model = boost::algorithm::FinderConcept<boost::algorithm::detail::token_finderF<boost::algorithm::detail::is_any_ofF<char> >, __gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >]’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/iter_find.hpp:81:13:   required from ‘SequenceSequenceT& boost::algorithm::iter_split(SequenceSequenceT&, RangeT&&, FinderT) [with SequenceSequenceT = std::vector<std::__cxx11::basic_string<char> >; RangeT = std::__cxx11::basic_string<char>&; FinderT = detail::token_finderF<detail::is_any_ofF<char> >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/split.hpp:158:50:   required from ‘SequenceSequenceT& boost::algorithm::split(SequenceSequenceT&, RangeT&&, PredicateT, token_compress_mode_type) [with SequenceSequenceT = std::vector<std::__cxx11::basic_string<char> >; RangeT = std::__cxx11::basic_string<char>&; PredicateT = detail::is_any_ofF<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/stan_csv_reader.hpp:19:17:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp:65:52: warning: ‘this’ pointer is null [-Wnonnull]
   65 |     static void failed() { ((Model*)0)->constraints(); }
      |                            ~~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/iter_find.hpp:26,
                 from /home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/split.hpp:16,
                 from /home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string.hpp:23,
                 from /home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/stan_csv_reader.hpp:4,
                 from /home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:46:
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/concept.hpp:40:18: note: in a call to non-static member function ‘void boost::algorithm::FinderConcept<FinderT, IteratorT>::constraints() [with FinderT = boost::algorithm::detail::token_finderF<boost::algorithm::detail::is_any_ofF<char> >; IteratorT = __gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> >]’
   40 |             void constraints()
      |                  ^~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::constraint<Model>::failed() [with Model = boost::algorithm::FinderConcept<boost::algorithm::detail::first_finderF<const char*, boost::algorithm::is_equal>, __gnu_cxx::__normal_iterator<const char*, std::__cxx11::basic_string<char> > >]’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/find_format.hpp:98:13:   required from ‘void boost::algorithm::find_format(SequenceT&, FinderT, FormatterT) [with SequenceT = std::__cxx11::basic_string<char>; FinderT = detail::first_finderF<const char*, is_equal>; FormatterT = detail::const_formatF<boost::iterator_range<const char*> >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/replace.hpp:179:44:   required from ‘void boost::algorithm::replace_first(SequenceT&, const Range1T&, const Range2T&) [with SequenceT = std::__cxx11::basic_string<char>; Range1T = char [11]; Range2T = char [1]]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/stan_csv_reader.hpp:133:29:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp:65:52: warning: ‘this’ pointer is null [-Wnonnull]
   65 |     static void failed() { ((Model*)0)->constraints(); }
      |                            ~~~~~~~~~~~~~~~~~~~~~~~~^~
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/concept.hpp:40:18: note: in a call to non-static member function ‘void boost::algorithm::FinderConcept<FinderT, IteratorT>::constraints() [with FinderT = boost::algorithm::detail::first_finderF<const char*, boost::algorithm::is_equal>; IteratorT = __gnu_cxx::__normal_iterator<const char*, std::__cxx11::basic_string<char> >]’
   40 |             void constraints()
      |                  ^~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::constraint<Model>::failed() [with Model = boost::algorithm::FormatterConcept<boost::algorithm::detail::const_formatF<boost::iterator_range<const char*> >, boost::algorithm::detail::first_finderF<const char*, boost::algorithm::is_equal>, __gnu_cxx::__normal_iterator<const char*, std::__cxx11::basic_string<char> > >]’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/find_format.hpp:103:13:   required from ‘void boost::algorithm::find_format(SequenceT&, FinderT, FormatterT) [with SequenceT = std::__cxx11::basic_string<char>; FinderT = detail::first_finderF<const char*, is_equal>; FormatterT = detail::const_formatF<boost::iterator_range<const char*> >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/replace.hpp:179:44:   required from ‘void boost::algorithm::replace_first(SequenceT&, const Range1T&, const Range2T&) [with SequenceT = std::__cxx11::basic_string<char>; Range1T = char [11]; Range2T = char [1]]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/stan_csv_reader.hpp:133:29:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp:65:52: warning: ‘this’ pointer is null [-Wnonnull]
   65 |     static void failed() { ((Model*)0)->constraints(); }
      |                            ~~~~~~~~~~~~~~~~~~~~~~~~^~
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/concept.hpp:65:18: note: in a call to non-static member function ‘void boost::algorithm::FormatterConcept<FormatterT, FinderT, IteratorT>::constraints() [with FormatterT = boost::algorithm::detail::const_formatF<boost::iterator_range<const char*> >; FinderT = boost::algorithm::detail::first_finderF<const char*, boost::algorithm::is_equal>; IteratorT = __gnu_cxx::__normal_iterator<const char*, std::__cxx11::basic_string<char> >]’
   65 |             void constraints()
      |                  ^~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>, 3>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81:   required from ‘class Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/VectorBlock.h:56:47:   required from ‘class Eigen::VectorBlock<Eigen::Matrix<double, -1, 1>, -1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:563:19:   required from ‘Eigen::ComputationInfo Eigen::internal::computeFromTridiagonal_impl(DiagType&, SubDiagType&, Eigen::Index, bool, MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagType = Eigen::Matrix<double, -1, 1>; SubDiagType = Eigen::Matrix<double, -1, 1>; Eigen::Index = long int]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:460:49:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   56 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase<Derived>&) [with Derived = Eigen::CwiseUnaryOp<scalar_exp_op<double>, const Eigen::CwiseBinaryOp<scalar_difference_op<double, double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >; Eigen::Index = long int]’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63:   required from ‘static Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::Scalar Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >; Func = Eigen::internal::scalar_sum_op<double, double>; Evaluator = Eigen::internal::redux_evaluator<Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > > >; Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56:   required from ‘typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >; typename Eigen::internal::traits<T>::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25:   required from ‘typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::sum() const [with Derived = Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >; typename Eigen::internal::traits<T>::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/log_sum_exp.hpp:92:26:   required from ‘stan::math::log_sum_exp<Eigen::Matrix<double, -1, 1> >(const Eigen::Matrix<double, -1, 1>&)::<lambda(const auto:304&)> [with auto:304 = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_vector_unary.hpp:93:13:   required from ‘static auto stan::math::apply_vector_unary<T, typename std::enable_if<stan::is_eigen<typename std::decay<_Tp>::type>::value, void>::type>::reduce(const T&, const F&) [with F = stan::math::log_sum_exp<Eigen::Matrix<double, -1, 1> >(const Eigen::Matrix<double, -1, 1>&)::<lambda(const auto:304&)>; T = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/log_sum_exp.hpp:83:39:   required from ‘auto stan::math::log_sum_exp(const T&) [with T = Eigen::Matrix<double, -1, 1>; stan::require_container_st<std::is_arithmetic, Container>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/dirichlet_rng.hpp:59:35:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
  654 |   return internal::first_aligned<int(unpacket_traits<DefaultPacketType>::alignment),Derived>(m);
      |                                                                          ^~~~~~~~~
In file included from /home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/Core:330:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h: In instantiation of ‘class Eigen::internal::gebp_traits<double, double, false, false, 1, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h:72:102:   required from ‘static void Eigen::internal::general_matrix_matrix_triangular_product<Index, LhsScalar, LhsStorageOrder, ConjugateLhs, RhsScalar, RhsStorageOrder, ConjugateRhs, 0, ResInnerStride, UpLo, Version>::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, Index, const ResScalar&, Eigen::internal::level3_blocking<LhsScalar, RhsScalar>&) [with Index = long int; LhsScalar = double; int LhsStorageOrder = 1; bool ConjugateLhs = false; RhsScalar = double; int RhsStorageOrder = 0; bool ConjugateRhs = false; int ResInnerStride = 1; int UpLo = 2; int Version = 0; ResScalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointProduct.h:113:12:   required from ‘static void Eigen::selfadjoint_product_selector<MatrixType, OtherType, UpLo, false>::run(MatrixType&, const OtherType&, const typename MatrixType::Scalar&) [with MatrixType = Eigen::Matrix<double, -1, -1>; OtherType = Eigen::Matrix<double, -1, -1, 1, -1, -1>; int UpLo = 2; typename MatrixType::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointProduct.h:126:62:   required from ‘Eigen::SelfAdjointView<MatrixType, UpLo>& Eigen::SelfAdjointView<MatrixType, Mode>::rankUpdate(const Eigen::MatrixBase<OtherDerived>&, const Scalar&) [with DerivedU = Eigen::Matrix<double, -1, -1, 1, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>; unsigned int UpLo = 2; Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:33:78:   required from ‘Eigen::Matrix<typename stan::value_type<T>::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0> >; stan::require_eigen_vt<std::is_arithmetic, T>* <anonymous> = 0; typename stan::value_type<T>::type = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20:   required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0>; stan::require_eigen_t<T_desired>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:425:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
  425 |   PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize);
      |                           ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’
  384 |   prefix ## name ## Packet
      |   ^~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:425:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
  425 |   PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize);
      |                           ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’
  384 |   prefix ## name ## Packet
      |   ^~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:425:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
  425 |   PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize);
      |                           ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’
  384 |   prefix ## name ## Packet
      |   ^~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:425:27: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
  425 |   PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize);
      |                           ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’
  384 |   prefix ## name ## Packet
      |   ^~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:426:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
  426 |   PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize);
      |                           ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’
  384 |   prefix ## name ## Packet
      |   ^~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:426:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
  426 |   PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize);
      |                           ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’
  384 |   prefix ## name ## Packet
      |   ^~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:426:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
  426 |   PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize);
      |                           ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’
  384 |   prefix ## name ## Packet
      |   ^~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:426:27: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
  426 |   PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize);
      |                           ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’
  384 |   prefix ## name ## Packet
      |   ^~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:427:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
  427 |   PACKET_DECL_COND_PREFIX(_, Res, _PacketSize);
      |                           ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’
  384 |   prefix ## name ## Packet
      |   ^~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:427:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
  427 |   PACKET_DECL_COND_PREFIX(_, Res, _PacketSize);
      |                           ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’
  384 |   prefix ## name ## Packet
      |   ^~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:427:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
  427 |   PACKET_DECL_COND_PREFIX(_, Res, _PacketSize);
      |                           ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’
  384 |   prefix ## name ## Packet
      |   ^~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:427:27: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
  427 |   PACKET_DECL_COND_PREFIX(_, Res, _PacketSize);
      |                           ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’
  384 |   prefix ## name ## Packet
      |   ^~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:49: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
  432 |     Vectorizable = unpacket_traits<_LhsPacket>::vectorizable && unpacket_traits<_RhsPacket>::vectorizable,
      |                                                 ^~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:49: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:49: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:49: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:94: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
  432 |     Vectorizable = unpacket_traits<_LhsPacket>::vectorizable && unpacket_traits<_RhsPacket>::vectorizable,
      |                                                                                              ^~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:94: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:94: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:94: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:433:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
  433 |     LhsPacketSize = Vectorizable ? unpacket_traits<_LhsPacket>::size : 1,
      |                                                                 ^~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:433:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:433:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:433:65: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:434:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
  434 |     RhsPacketSize = Vectorizable ? unpacket_traits<_RhsPacket>::size : 1,
      |                                                                 ^~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:434:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:434:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:434:65: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:435:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
  435 |     ResPacketSize = Vectorizable ? unpacket_traits<_ResPacket>::size : 1,
      |                                                                 ^~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:435:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:435:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:435:65: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:460:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
  460 |   typedef typename conditional<Vectorizable,_LhsPacket,LhsScalar>::type LhsPacket;
      |                                                                         ^~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:460:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:460:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:460:73: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:461:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
  461 |   typedef typename conditional<Vectorizable,_RhsPacket,RhsScalar>::type RhsPacket;
      |                                                                         ^~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:461:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:461:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:461:73: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:462:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
  462 |   typedef typename conditional<Vectorizable,_ResPacket,ResScalar>::type ResPacket;
      |                                                                         ^~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:462:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:462:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:462:73: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:465:33: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
  465 |   typedef QuadPacket<RhsPacket> RhsPacketx4;
      |                                 ^~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:465:33: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:465:33: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:465:33: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h: In instantiation of ‘class Eigen::internal::gebp_traits<double, double, false, false, 1, 1>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1080:42:   required from ‘struct Eigen::internal::gebp_kernel<double, double, long int, Eigen::internal::blas_data_mapper<double, long int, 0, 0, 1>, 4, 4, false, false>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h:92:109:   required from ‘static void Eigen::internal::general_matrix_matrix_triangular_product<Index, LhsScalar, LhsStorageOrder, ConjugateLhs, RhsScalar, RhsStorageOrder, ConjugateRhs, 0, ResInnerStride, UpLo, Version>::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, Index, const ResScalar&, Eigen::internal::level3_blocking<LhsScalar, RhsScalar>&) [with Index = long int; LhsScalar = double; int LhsStorageOrder = 1; bool ConjugateLhs = false; RhsScalar = double; int RhsStorageOrder = 0; bool ConjugateRhs = false; int ResInnerStride = 1; int UpLo = 2; int Version = 0; ResScalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointProduct.h:113:12:   required from ‘static void Eigen::selfadjoint_product_selector<MatrixType, OtherType, UpLo, false>::run(MatrixType&, const OtherType&, const typename MatrixType::Scalar&) [with MatrixType = Eigen::Matrix<double, -1, -1>; OtherType = Eigen::Matrix<double, -1, -1, 1, -1, -1>; int UpLo = 2; typename MatrixType::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointProduct.h:126:62:   required from ‘Eigen::SelfAdjointView<MatrixType, UpLo>& Eigen::SelfAdjointView<MatrixType, Mode>::rankUpdate(const Eigen::MatrixBase<OtherDerived>&, const Scalar&) [with DerivedU = Eigen::Matrix<double, -1, -1, 1, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>; unsigned int UpLo = 2; Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:33:78:   required from ‘Eigen::Matrix<typename stan::value_type<T>::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0> >; stan::require_eigen_vt<std::is_arithmetic, T>* <anonymous> = 0; typename stan::value_type<T>::type = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20:   required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0>; stan::require_eigen_t<T_desired>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:425:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
  425 |   PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize);
      |                           ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’
  384 |   prefix ## name ## Packet
      |   ^~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:425:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
  425 |   PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize);
      |                           ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’
  384 |   prefix ## name ## Packet
      |   ^~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:425:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
  425 |   PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize);
      |                           ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’
  384 |   prefix ## name ## Packet
      |   ^~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:425:27: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
  425 |   PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize);
      |                           ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’
  384 |   prefix ## name ## Packet
      |   ^~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:426:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
  426 |   PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize);
      |                           ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’
  384 |   prefix ## name ## Packet
      |   ^~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:426:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
  426 |   PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize);
      |                           ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’
  384 |   prefix ## name ## Packet
      |   ^~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:426:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
  426 |   PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize);
      |                           ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’
  384 |   prefix ## name ## Packet
      |   ^~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:426:27: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
  426 |   PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize);
      |                           ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’
  384 |   prefix ## name ## Packet
      |   ^~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:427:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
  427 |   PACKET_DECL_COND_PREFIX(_, Res, _PacketSize);
      |                           ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’
  384 |   prefix ## name ## Packet
      |   ^~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:427:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
  427 |   PACKET_DECL_COND_PREFIX(_, Res, _PacketSize);
      |                           ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’
  384 |   prefix ## name ## Packet
      |   ^~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:427:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
  427 |   PACKET_DECL_COND_PREFIX(_, Res, _PacketSize);
      |                           ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’
  384 |   prefix ## name ## Packet
      |   ^~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:427:27: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
  427 |   PACKET_DECL_COND_PREFIX(_, Res, _PacketSize);
      |                           ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’
  384 |   prefix ## name ## Packet
      |   ^~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:49: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
  432 |     Vectorizable = unpacket_traits<_LhsPacket>::vectorizable && unpacket_traits<_RhsPacket>::vectorizable,
      |                                                 ^~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:49: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:49: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:49: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:94: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
  432 |     Vectorizable = unpacket_traits<_LhsPacket>::vectorizable && unpacket_traits<_RhsPacket>::vectorizable,
      |                                                                                              ^~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:94: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:94: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:94: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:433:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
  433 |     LhsPacketSize = Vectorizable ? unpacket_traits<_LhsPacket>::size : 1,
      |                                                                 ^~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:433:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:433:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:433:65: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:434:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
  434 |     RhsPacketSize = Vectorizable ? unpacket_traits<_RhsPacket>::size : 1,
      |                                                                 ^~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:434:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:434:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:434:65: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:435:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
  435 |     ResPacketSize = Vectorizable ? unpacket_traits<_ResPacket>::size : 1,
      |                                                                 ^~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:435:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:435:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:435:65: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:460:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
  460 |   typedef typename conditional<Vectorizable,_LhsPacket,LhsScalar>::type LhsPacket;
      |                                                                         ^~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:460:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:460:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:460:73: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:461:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
  461 |   typedef typename conditional<Vectorizable,_RhsPacket,RhsScalar>::type RhsPacket;
      |                                                                         ^~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:461:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:461:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:461:73: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:462:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
  462 |   typedef typename conditional<Vectorizable,_ResPacket,ResScalar>::type ResPacket;
      |                                                                         ^~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:462:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:462:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:462:73: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:465:33: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
  465 |   typedef QuadPacket<RhsPacket> RhsPacketx4;
      |                                 ^~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:465:33: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:465:33: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:465:33: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h: In instantiation of ‘class Eigen::internal::gebp_traits<double, double, false, false, 1, 2>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1085:45:   required from ‘struct Eigen::internal::gebp_kernel<double, double, long int, Eigen::internal::blas_data_mapper<double, long int, 0, 0, 1>, 4, 4, false, false>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h:92:109:   required from ‘static void Eigen::internal::general_matrix_matrix_triangular_product<Index, LhsScalar, LhsStorageOrder, ConjugateLhs, RhsScalar, RhsStorageOrder, ConjugateRhs, 0, ResInnerStride, UpLo, Version>::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, Index, const ResScalar&, Eigen::internal::level3_blocking<LhsScalar, RhsScalar>&) [with Index = long int; LhsScalar = double; int LhsStorageOrder = 1; bool ConjugateLhs = false; RhsScalar = double; int RhsStorageOrder = 0; bool ConjugateRhs = false; int ResInnerStride = 1; int UpLo = 2; int Version = 0; ResScalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointProduct.h:113:12:   required from ‘static void Eigen::selfadjoint_product_selector<MatrixType, OtherType, UpLo, false>::run(MatrixType&, const OtherType&, const typename MatrixType::Scalar&) [with MatrixType = Eigen::Matrix<double, -1, -1>; OtherType = Eigen::Matrix<double, -1, -1, 1, -1, -1>; int UpLo = 2; typename MatrixType::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointProduct.h:126:62:   required from ‘Eigen::SelfAdjointView<MatrixType, UpLo>& Eigen::SelfAdjointView<MatrixType, Mode>::rankUpdate(const Eigen::MatrixBase<OtherDerived>&, const Scalar&) [with DerivedU = Eigen::Matrix<double, -1, -1, 1, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>; unsigned int UpLo = 2; Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:33:78:   required from ‘Eigen::Matrix<typename stan::value_type<T>::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0> >; stan::require_eigen_vt<std::is_arithmetic, T>* <anonymous> = 0; typename stan::value_type<T>::type = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20:   required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0>; stan::require_eigen_t<T_desired>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:425:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
  425 |   PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize);
      |                           ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’
  384 |   prefix ## name ## Packet
      |   ^~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:425:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
  425 |   PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize);
      |                           ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’
  384 |   prefix ## name ## Packet
      |   ^~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:425:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
  425 |   PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize);
      |                           ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’
  384 |   prefix ## name ## Packet
      |   ^~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:425:27: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
  425 |   PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize);
      |                           ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’
  384 |   prefix ## name ## Packet
      |   ^~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:426:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
  426 |   PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize);
      |                           ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’
  384 |   prefix ## name ## Packet
      |   ^~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:426:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
  426 |   PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize);
      |                           ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’
  384 |   prefix ## name ## Packet
      |   ^~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:426:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
  426 |   PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize);
      |                           ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’
  384 |   prefix ## name ## Packet
      |   ^~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:426:27: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
  426 |   PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize);
      |                           ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’
  384 |   prefix ## name ## Packet
      |   ^~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:427:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
  427 |   PACKET_DECL_COND_PREFIX(_, Res, _PacketSize);
      |                           ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’
  384 |   prefix ## name ## Packet
      |   ^~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:427:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
  427 |   PACKET_DECL_COND_PREFIX(_, Res, _PacketSize);
      |                           ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’
  384 |   prefix ## name ## Packet
      |   ^~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:427:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
  427 |   PACKET_DECL_COND_PREFIX(_, Res, _PacketSize);
      |                           ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’
  384 |   prefix ## name ## Packet
      |   ^~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:427:27: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
  427 |   PACKET_DECL_COND_PREFIX(_, Res, _PacketSize);
      |                           ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’
  384 |   prefix ## name ## Packet
      |   ^~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:49: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
  432 |     Vectorizable = unpacket_traits<_LhsPacket>::vectorizable && unpacket_traits<_RhsPacket>::vectorizable,
      |                                                 ^~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:49: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:49: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:49: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:94: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
  432 |     Vectorizable = unpacket_traits<_LhsPacket>::vectorizable && unpacket_traits<_RhsPacket>::vectorizable,
      |                                                                                              ^~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:94: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:94: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:94: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:433:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
  433 |     LhsPacketSize = Vectorizable ? unpacket_traits<_LhsPacket>::size : 1,
      |                                                                 ^~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:433:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:433:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:433:65: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:434:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
  434 |     RhsPacketSize = Vectorizable ? unpacket_traits<_RhsPacket>::size : 1,
      |                                                                 ^~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:434:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:434:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:434:65: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:435:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
  435 |     ResPacketSize = Vectorizable ? unpacket_traits<_ResPacket>::size : 1,
      |                                                                 ^~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:435:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:435:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:435:65: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:460:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
  460 |   typedef typename conditional<Vectorizable,_LhsPacket,LhsScalar>::type LhsPacket;
      |                                                                         ^~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:460:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:460:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:460:73: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:461:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
  461 |   typedef typename conditional<Vectorizable,_RhsPacket,RhsScalar>::type RhsPacket;
      |                                                                         ^~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:461:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:461:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:461:73: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:462:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
  462 |   typedef typename conditional<Vectorizable,_ResPacket,ResScalar>::type ResPacket;
      |                                                                         ^~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:462:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:462:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:462:73: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:465:33: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
  465 |   typedef QuadPacket<RhsPacket> RhsPacketx4;
      |                                 ^~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:465:33: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:465:33: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:465:33: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, -1, false>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, -1, false>, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, -1, false>, 3>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, -1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, -1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, -1, false>, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CommaInitializer.h:159:10:   required from ‘Eigen::CommaInitializer<Derived> Eigen::DenseBase<Derived>::operator<<(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Map<const Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> >; Derived = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/append_row.hpp:102:10:   required from ‘Eigen::Matrix<typename stan::return_type<T1, T2>::type, -1, 1> stan::math::append_row(const ColVec&, const Scal&) [with ColVec = Eigen::Map<const Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> >; Scal = double; stan::require_t<stan::is_eigen_col_vector<T> >* <anonymous> = 0; stan::require_stan_scalar_t<V>* <anonymous> = 0; typename stan::return_type<T1, T2>::type = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:29:31:   required from ‘T_return stan::math::internal::hypergeometric_3F2_infsum(const Ta&, const Tb&, const Tz&, double, int) [with Ta = std::vector<double>; Tb = std::vector<double>; Tz = double; T_return = double; ArrayAT = Eigen::Array<double, 3, 1>; ArrayBT = Eigen::Array<double, 3, 1>; stan::require_all_vector_t<T_y, T_high>* <anonymous> = 0; stan::require_stan_scalar_t<T2>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:123:47:   required from ‘auto stan::math::hypergeometric_3F2(const Ta&, const Tb&, const Tz&) [with Ta = std::vector<double>; Tb = std::vector<double>; Tz = double; stan::require_all_vector_t<T_y, T_high>* <anonymous> = 0; stan::require_stan_scalar_t<T2>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:148:28:   required from ‘auto stan::math::hypergeometric_3F2(const std::initializer_list<_Tp>&, const std::initializer_list<_Value>&, const Tz&) [with Ta = double; Tb = double; Tz = double; stan::require_all_stan_scalar_t<Ta, Tb, Tz>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/inv_inc_beta.hpp:77:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   56 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase<Derived>&) [with Derived = Eigen::Matrix<double, -1, 1>; Eigen::Index = long int]’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63:   required from ‘static Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::Scalar Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::Matrix<double, -1, 1>; Func = Eigen::internal::scalar_sum_op<double, double>; Evaluator = Eigen::internal::redux_evaluator<Eigen::Matrix<double, -1, 1> >; Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56:   required from ‘typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::Matrix<double, -1, 1>; typename Eigen::internal::traits<T>::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:478:32:   required from ‘typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::mean() const [with Derived = Eigen::Matrix<double, -1, 1>; typename Eigen::internal::traits<T>::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/variance.hpp:25:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
  654 |   return internal::first_aligned<int(unpacket_traits<DefaultPacketType>::alignment),Derived>(m);
      |                                                                          ^~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Diagonal<Eigen::Matrix<double, -1, -1>, -1>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Diagonal<Eigen::Matrix<double, -1, -1>, -1>, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Diagonal<Eigen::Matrix<double, -1, -1>, -1>, 3>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Diagonal<Eigen::Matrix<double, -1, -1>, -1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Diagonal<Eigen::Matrix<double, -1, -1>, -1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Diagonal.h:63:53:   required from ‘class Eigen::Diagonal<Eigen::Matrix<double, -1, -1>, -1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:451:40:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   56 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>, 3>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81:   required from ‘class Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:514:91:   required from ‘Eigen::LDLT<_MatrixType, _UpLo>& Eigen::LDLT<MatrixType, UpLo>::compute(const Eigen::EigenBase<OtherDerived>&) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>; int _UpLo = 1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:120:14:   required from ‘Eigen::LDLT<MatrixType, UpLo>::LDLT(const Eigen::EigenBase<OtherDerived>&) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>; int _UpLo = 1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:683:10:   required from ‘const Eigen::LDLT<typename Eigen::DenseBase<Derived>::PlainObject> Eigen::MatrixBase<Derived>::ldlt() const [with Derived = Eigen::Matrix<double, -1, -1>; typename Eigen::DenseBase<Derived>::PlainObject = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:45:67:   required from ‘void stan::math::check_pos_definite(const char*, const char*, const EigMat&) [with EigMat = Eigen::Matrix<double, -1, -1>; stan::require_matrix_t<T>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:21:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>, 1, -1, false>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>, 1, -1, false>, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>, 1, -1, false>, 3>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>, 1, -1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>, 1, -1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>, 1, -1, false>, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/VectorBlock.h:56:47:   required from ‘class Eigen::VectorBlock<Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>, -1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:514:101:   required from ‘Eigen::LDLT<_MatrixType, _UpLo>& Eigen::LDLT<MatrixType, UpLo>::compute(const Eigen::EigenBase<OtherDerived>&) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>; int _UpLo = 1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:120:14:   required from ‘Eigen::LDLT<MatrixType, UpLo>::LDLT(const Eigen::EigenBase<OtherDerived>&) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>; int _UpLo = 1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:683:10:   required from ‘const Eigen::LDLT<typename Eigen::DenseBase<Derived>::PlainObject> Eigen::MatrixBase<Derived>::ldlt() const [with Derived = Eigen::Matrix<double, -1, -1>; typename Eigen::DenseBase<Derived>::PlainObject = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:45:67:   required from ‘void stan::math::check_pos_definite(const char*, const char*, const EigMat&) [with EigMat = Eigen::Matrix<double, -1, -1>; stan::require_matrix_t<T>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:21:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, 1> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, 1>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, 1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:191:0:   required from ‘int stan::optimization::BFGSMinimizer<FunctorType, QNUpdateType, Scalar, DimAtCompile>::step() [with FunctorType = stan::optimization::ModelAdaptor<model_shrinkage_namespace::model_shrinkage, false>; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0:   required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage; bool jacobian = false]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:15:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
In file included from /home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun.hpp:163:
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/simplex_constrain.hpp: In instantiation of ‘auto stan::math::simplex_constrain(const T&, stan::scalar_type_t<T>&) [with T = Eigen::Map<const Eigen::Matrix<var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> >; stan::require_rev_col_vector_t<T>* <anonymous> = 0; stan::scalar_type_t<T> = var_value<double>]’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/deserializer.hpp:569:0:   required from ‘auto stan::io::deserializer<T>::read_constrain_simplex(LP&, size_t) [with Ret = Eigen::Matrix<stan::math::var_value<double>, -1, 1>; bool Jacobian = true; LP = stan::math::var_value<double>; stan::require_not_std_vector_t<Ret>* <anonymous> = 0; T = stan::math::var_value<double>; size_t = long unsigned int]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/deserializer.hpp:602:0:   required from ‘auto stan::io::deserializer<T>::read_constrain_simplex(LP&, size_t, Sizes ...) [with Ret = std::vector<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, std::allocator<Eigen::Matrix<stan::math::var_value<double>, -1, 1> > >; bool Jacobian = true; LP = stan::math::var_value<double>; Sizes = {int}; stan::require_std_vector_t<Ret>* <anonymous> = 0; T = stan::math::var_value<double>; size_t = long unsigned int]’
stanExports_shrinkage.h:284:0:   required from ‘stan::scalar_type_t<T2> model_shrinkage_namespace::model_shrinkage::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector<stan::math::var_value<double>, std::allocator<stan::math::var_value<double> > >; VecI = std::vector<int>; stan::require_vector_like_t<VecR>* <anonymous> = 0; stan::require_vector_like_vt<std::is_integral, VecI>* <anonymous> = 0; stan::scalar_type_t<T2> = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
stanExports_shrinkage.h:884:0:   required from ‘T_ model_shrinkage_namespace::model_shrinkage::log_prob(std::vector<T_l>&, std::vector<int>&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0:   required from ‘double stan::model::log_prob_grad(const M&, std::vector<double>&, std::vector<int>&, std::vector<double>&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_shrinkage_namespace::model_shrinkage; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::grad_log_prob(SEXP, SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:23:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/simplex_constrain.hpp:94: warning: comparison of integer expressions of different signedness: ‘Eigen::Index’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   94 |   for (Eigen::Index k = 0; k < N; ++k) {
      | 
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >, 3>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:103:7:   required from ‘class Eigen::CwiseUnaryViewImpl<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:58:7:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/deserializer.hpp:602:0:   required from ‘auto stan::io::deserializer<T>::read_constrain_simplex(LP&, size_t, Sizes ...) [with Ret = std::vector<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, std::allocator<Eigen::Matrix<stan::math::var_value<double>, -1, 1> > >; bool Jacobian = true; LP = stan::math::var_value<double>; Sizes = {int}; stan::require_std_vector_t<Ret>* <anonymous> = 0; T = stan::math::var_value<double>; size_t = long unsigned int]’
stanExports_shrinkage.h:284:0:   required from ‘stan::scalar_type_t<T2> model_shrinkage_namespace::model_shrinkage::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector<stan::math::var_value<double>, std::allocator<stan::math::var_value<double> > >; VecI = std::vector<int>; stan::require_vector_like_t<VecR>* <anonymous> = 0; stan::require_vector_like_vt<std::is_integral, VecI>* <anonymous> = 0; stan::scalar_type_t<T2> = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
stanExports_shrinkage.h:884:0:   required from ‘T_ model_shrinkage_namespace::model_shrinkage::log_prob(std::vector<T_l>&, std::vector<int>&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0:   required from ‘double stan::model::log_prob_grad(const M&, std::vector<double>&, std::vector<int>&, std::vector<double>&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_shrinkage_namespace::model_shrinkage; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::grad_log_prob(SEXP, SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:23:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   56 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >, 3>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:103:7:   required from ‘class Eigen::CwiseUnaryViewImpl<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:58:7:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/deserializer.hpp:602:0:   required from ‘auto stan::io::deserializer<T>::read_constrain_simplex(LP&, size_t, Sizes ...) [with Ret = std::vector<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, std::allocator<Eigen::Matrix<stan::math::var_value<double>, -1, 1> > >; bool Jacobian = true; LP = stan::math::var_value<double>; Sizes = {int}; stan::require_std_vector_t<Ret>* <anonymous> = 0; T = stan::math::var_value<double>; size_t = long unsigned int]’
stanExports_shrinkage.h:284:0:   required from ‘stan::scalar_type_t<T2> model_shrinkage_namespace::model_shrinkage::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector<stan::math::var_value<double>, std::allocator<stan::math::var_value<double> > >; VecI = std::vector<int>; stan::require_vector_like_t<VecR>* <anonymous> = 0; stan::require_vector_like_vt<std::is_integral, VecI>* <anonymous> = 0; stan::scalar_type_t<T2> = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
stanExports_shrinkage.h:884:0:   required from ‘T_ model_shrinkage_namespace::model_shrinkage::log_prob(std::vector<T_l>&, std::vector<int>&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0:   required from ‘double stan::model::log_prob_grad(const M&, std::vector<double>&, std::vector<int>&, std::vector<double>&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_shrinkage_namespace::model_shrinkage; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::grad_log_prob(SEXP, SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:23:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/simplex_constrain.hpp: In instantiation of ‘auto stan::math::simplex_constrain(const T&) [with T = Eigen::Map<const Eigen::Matrix<var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> >; stan::require_rev_col_vector_t<T>* <anonymous> = 0]’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/deserializer.hpp:571:0:   required from ‘auto stan::io::deserializer<T>::read_constrain_simplex(LP&, size_t) [with Ret = Eigen::Matrix<stan::math::var_value<double>, -1, 1>; bool Jacobian = true; LP = stan::math::var_value<double>; stan::require_not_std_vector_t<Ret>* <anonymous> = 0; T = stan::math::var_value<double>; size_t = long unsigned int]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/deserializer.hpp:602:0:   required from ‘auto stan::io::deserializer<T>::read_constrain_simplex(LP&, size_t, Sizes ...) [with Ret = std::vector<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, std::allocator<Eigen::Matrix<stan::math::var_value<double>, -1, 1> > >; bool Jacobian = true; LP = stan::math::var_value<double>; Sizes = {int}; stan::require_std_vector_t<Ret>* <anonymous> = 0; T = stan::math::var_value<double>; size_t = long unsigned int]’
stanExports_shrinkage.h:284:0:   required from ‘stan::scalar_type_t<T2> model_shrinkage_namespace::model_shrinkage::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector<stan::math::var_value<double>, std::allocator<stan::math::var_value<double> > >; VecI = std::vector<int>; stan::require_vector_like_t<VecR>* <anonymous> = 0; stan::require_vector_like_vt<std::is_integral, VecI>* <anonymous> = 0; stan::scalar_type_t<T2> = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
stanExports_shrinkage.h:884:0:   required from ‘T_ model_shrinkage_namespace::model_shrinkage::log_prob(std::vector<T_l>&, std::vector<int>&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0:   required from ‘double stan::model::log_prob_grad(const M&, std::vector<double>&, std::vector<int>&, std::vector<double>&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_shrinkage_namespace::model_shrinkage; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::grad_log_prob(SEXP, SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:23:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/simplex_constrain.hpp:40: warning: comparison of integer expressions of different signedness: ‘Eigen::Index’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   40 |   for (Eigen::Index k = 0; k < N; ++k) {
      | 
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/deserializer.hpp: In instantiation of ‘auto stan::io::deserializer<T>::read(Eigen::Index, Sizes ...) [with Ret = std::vector<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, std::allocator<Eigen::Matrix<stan::math::var_value<double>, -1, 1> > >; Sizes = {int}; stan::require_std_vector_t<Ret>* <anonymous> = 0; stan::require_not_same_t<typename stan::value_type<S, void>::type, T>* <anonymous> = 0; T = stan::math::var_value<double>; Eigen::Index = long int]’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/deserializer.hpp:441:0:   required from ‘auto stan::io::deserializer<T>::read_constrain_lub(const LB&, const UB&, LP&, Sizes ...) [with Ret = std::vector<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, std::allocator<Eigen::Matrix<stan::math::var_value<double>, -1, 1> > >; bool Jacobian = true; LB = int; UB = double; LP = stan::math::var_value<double>; Sizes = {int, int}; T = stan::math::var_value<double>]’
stanExports_shrinkage.h:291:0:   required from ‘stan::scalar_type_t<T2> model_shrinkage_namespace::model_shrinkage::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector<stan::math::var_value<double>, std::allocator<stan::math::var_value<double> > >; VecI = std::vector<int>; stan::require_vector_like_t<VecR>* <anonymous> = 0; stan::require_vector_like_vt<std::is_integral, VecI>* <anonymous> = 0; stan::scalar_type_t<T2> = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
stanExports_shrinkage.h:884:0:   required from ‘T_ model_shrinkage_namespace::model_shrinkage::log_prob(std::vector<T_l>&, std::vector<int>&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0:   required from ‘double stan::model::log_prob_grad(const M&, std::vector<double>&, std::vector<int>&, std::vector<double>&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_shrinkage_namespace::model_shrinkage; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::grad_log_prob(SEXP, SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:23:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/deserializer.hpp:337: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::Index’ {aka ‘long int’} [-Wsign-compare]
  337 |       for (size_t i = 0; i < m; ++i) {
      | 
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 3>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7:   required from ‘class Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/lb_constrain.hpp:143:0:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/deserializer.hpp:441:0:   required from ‘auto stan::io::deserializer<T>::read_constrain_lub(const LB&, const UB&, LP&, Sizes ...) [with Ret = std::vector<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, std::allocator<Eigen::Matrix<stan::math::var_value<double>, -1, 1> > >; bool Jacobian = true; LB = int; UB = double; LP = stan::math::var_value<double>; Sizes = {int, int}; T = stan::math::var_value<double>]’
stanExports_shrinkage.h:291:0:   required from ‘stan::scalar_type_t<T2> model_shrinkage_namespace::model_shrinkage::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector<stan::math::var_value<double>, std::allocator<stan::math::var_value<double> > >; VecI = std::vector<int>; stan::require_vector_like_t<VecR>* <anonymous> = 0; stan::require_vector_like_vt<std::is_integral, VecI>* <anonymous> = 0; stan::scalar_type_t<T2> = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
stanExports_shrinkage.h:884:0:   required from ‘T_ model_shrinkage_namespace::model_shrinkage::log_prob(std::vector<T_l>&, std::vector<int>&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0:   required from ‘double stan::model::log_prob_grad(const M&, std::vector<double>&, std::vector<int>&, std::vector<double>&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_shrinkage_namespace::model_shrinkage; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::grad_log_prob(SEXP, SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:23:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   56 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_exp_op<double>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/lb_constrain.hpp:143:0:   required from ‘auto stan::math::lb_constrain(const T&, const L&) [with T = Eigen::Matrix<var_value<double>, -1, 1>; L = int; stan::require_matrix_t<T>* <anonymous> = 0; stan::require_stan_scalar_t<V>* <anonymous> = 0; stan::require_any_st_var<Scalar, Mat>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/lub_constrain.hpp:165:0:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/deserializer.hpp:441:0:   required from ‘auto stan::io::deserializer<T>::read_constrain_lub(const LB&, const UB&, LP&, Sizes ...) [with Ret = std::vector<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, std::allocator<Eigen::Matrix<stan::math::var_value<double>, -1, 1> > >; bool Jacobian = true; LB = int; UB = double; LP = stan::math::var_value<double>; Sizes = {int, int}; T = stan::math::var_value<double>]’
stanExports_shrinkage.h:291:0:   required from ‘stan::scalar_type_t<T2> model_shrinkage_namespace::model_shrinkage::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector<stan::math::var_value<double>, std::allocator<stan::math::var_value<double> > >; VecI = std::vector<int>; stan::require_vector_like_t<VecR>* <anonymous> = 0; stan::require_vector_like_vt<std::is_integral, VecI>* <anonymous> = 0; stan::scalar_type_t<T2> = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
stanExports_shrinkage.h:884:0:   required from ‘T_ model_shrinkage_namespace::model_shrinkage::log_prob(std::vector<T_l>&, std::vector<int>&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0:   required from ‘double stan::model::log_prob_grad(const M&, std::vector<double>&, std::vector<int>&, std::vector<double>&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_shrinkage_namespace::model_shrinkage; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::grad_log_prob(SEXP, SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:23:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, int>, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, int>, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, int>, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_sum_op<double, int>, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, int>, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/lb_constrain.hpp:144:0:   required from ‘auto stan::math::lb_constrain(const T&, const L&) [with T = Eigen::Matrix<var_value<double>, -1, 1>; L = int; stan::require_matrix_t<T>* <anonymous> = 0; stan::require_stan_scalar_t<V>* <anonymous> = 0; stan::require_any_st_var<Scalar, Mat>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/lub_constrain.hpp:165:0:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/deserializer.hpp:441:0:   required from ‘auto stan::io::deserializer<T>::read_constrain_lub(const LB&, const UB&, LP&, Sizes ...) [with Ret = std::vector<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, std::allocator<Eigen::Matrix<stan::math::var_value<double>, -1, 1> > >; bool Jacobian = true; LB = int; UB = double; LP = stan::math::var_value<double>; Sizes = {int, int}; T = stan::math::var_value<double>]’
stanExports_shrinkage.h:291:0:   required from ‘stan::scalar_type_t<T2> model_shrinkage_namespace::model_shrinkage::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector<stan::math::var_value<double>, std::allocator<stan::math::var_value<double> > >; VecI = std::vector<int>; stan::require_vector_like_t<VecR>* <anonymous> = 0; stan::require_vector_like_vt<std::is_integral, VecI>* <anonymous> = 0; stan::scalar_type_t<T2> = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
stanExports_shrinkage.h:884:0:   required from ‘T_ model_shrinkage_namespace::model_shrinkage::log_prob(std::vector<T_l>&, std::vector<int>&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0:   required from ‘double stan::model::log_prob_grad(const M&, std::vector<double>&, std::vector<int>&, std::vector<double>&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_shrinkage_namespace::model_shrinkage; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::grad_log_prob(SEXP, SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:23:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 3>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7:   required from ‘class Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/lb_constrain.hpp:147:0:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/deserializer.hpp:441:0:   required from ‘auto stan::io::deserializer<T>::read_constrain_lub(const LB&, const UB&, LP&, Sizes ...) [with Ret = std::vector<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, std::allocator<Eigen::Matrix<stan::math::var_value<double>, -1, 1> > >; bool Jacobian = true; LB = int; UB = double; LP = stan::math::var_value<double>; Sizes = {int, int}; T = stan::math::var_value<double>]’
stanExports_shrinkage.h:291:0:   required from ‘stan::scalar_type_t<T2> model_shrinkage_namespace::model_shrinkage::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector<stan::math::var_value<double>, std::allocator<stan::math::var_value<double> > >; VecI = std::vector<int>; stan::require_vector_like_t<VecR>* <anonymous> = 0; stan::require_vector_like_vt<std::is_integral, VecI>* <anonymous> = 0; stan::scalar_type_t<T2> = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
stanExports_shrinkage.h:884:0:   required from ‘T_ model_shrinkage_namespace::model_shrinkage::log_prob(std::vector<T_l>&, std::vector<int>&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0:   required from ‘double stan::model::log_prob_grad(const M&, std::vector<double>&, std::vector<int>&, std::vector<double>&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_shrinkage_namespace::model_shrinkage; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::grad_log_prob(SEXP, SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:23:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/lb_constrain.hpp:147:0:   required from ‘auto stan::math::lb_constrain(const T&, const L&) [with T = Eigen::Matrix<var_value<double>, -1, 1>; L = int; stan::require_matrix_t<T>* <anonymous> = 0; stan::require_stan_scalar_t<V>* <anonymous> = 0; stan::require_any_st_var<Scalar, Mat>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/lub_constrain.hpp:165:0:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/deserializer.hpp:441:0:   required from ‘auto stan::io::deserializer<T>::read_constrain_lub(const LB&, const UB&, LP&, Sizes ...) [with Ret = std::vector<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, std::allocator<Eigen::Matrix<stan::math::var_value<double>, -1, 1> > >; bool Jacobian = true; LB = int; UB = double; LP = stan::math::var_value<double>; Sizes = {int, int}; T = stan::math::var_value<double>]’
stanExports_shrinkage.h:291:0:   required from ‘stan::scalar_type_t<T2> model_shrinkage_namespace::model_shrinkage::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector<stan::math::var_value<double>, std::allocator<stan::math::var_value<double> > >; VecI = std::vector<int>; stan::require_vector_like_t<VecR>* <anonymous> = 0; stan::require_vector_like_vt<std::is_integral, VecI>* <anonymous> = 0; stan::scalar_type_t<T2> = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
stanExports_shrinkage.h:884:0:   required from ‘T_ model_shrinkage_namespace::model_shrinkage::log_prob(std::vector<T_l>&, std::vector<int>&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0:   required from ‘double stan::model::log_prob_grad(const M&, std::vector<double>&, std::vector<int>&, std::vector<double>&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_shrinkage_namespace::model_shrinkage; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::grad_log_prob(SEXP, SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:23:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<Eigen::CwiseUnaryOp<stan::math::value_of<const Eigen::Matrix<var_value<double>, -1, 1>&>(const Eigen::Matrix<var_value<double>, -1, 1>&)::<lambda(auto:11&)>::<lambda(const auto:12&)>, const Eigen::Matrix<stan::math::var_value<double>, -1, 1> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::ArrayWrapper<Eigen::CwiseUnaryOp<stan::math::value_of<const Eigen::Matrix<var_value<double>, -1, 1>&>(const Eigen::Matrix<var_value<double>, -1, 1>&)::<lambda(auto:11&)>::<lambda(const auto:12&)>, const Eigen::Matrix<stan::math::var_value<double>, -1, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::ArrayWrapper<Eigen::CwiseUnaryOp<stan::math::value_of<const Eigen::Matrix<var_value<double>, -1, 1>&>(const Eigen::Matrix<var_value<double>, -1, 1>&)::<lambda(auto:11&)>::<lambda(const auto:12&)>, const Eigen::Matrix<stan::math::var_value<double>, -1, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7:   required from ‘class Eigen::ArrayWrapper<Eigen::CwiseUnaryOp<stan::math::value_of<const Eigen::Matrix<var_value<double>, -1, 1>&>(const Eigen::Matrix<var_value<double>, -1, 1>&)::<lambda(auto:11&)>::<lambda(const auto:12&)>, const Eigen::Matrix<stan::math::var_value<double>, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/lb_constrain.hpp:160:0:   required from ‘auto stan::math::lb_constrain(const T&, const L&) [with T = Eigen::Matrix<var_value<double>, -1, 1>; L = int; stan::require_matrix_t<T>* <anonymous> = 0; stan::require_stan_scalar_t<V>* <anonymous> = 0; stan::require_any_st_var<Scalar, Mat>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/lub_constrain.hpp:165:0:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/deserializer.hpp:441:0:   required from ‘auto stan::io::deserializer<T>::read_constrain_lub(const LB&, const UB&, LP&, Sizes ...) [with Ret = std::vector<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, std::allocator<Eigen::Matrix<stan::math::var_value<double>, -1, 1> > >; bool Jacobian = true; LB = int; UB = double; LP = stan::math::var_value<double>; Sizes = {int, int}; T = stan::math::var_value<double>]’
stanExports_shrinkage.h:291:0:   required from ‘stan::scalar_type_t<T2> model_shrinkage_namespace::model_shrinkage::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector<stan::math::var_value<double>, std::allocator<stan::math::var_value<double> > >; VecI = std::vector<int>; stan::require_vector_like_t<VecR>* <anonymous> = 0; stan::require_vector_like_vt<std::is_integral, VecI>* <anonymous> = 0; stan::scalar_type_t<T2> = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
stanExports_shrinkage.h:884:0:   required from ‘T_ model_shrinkage_namespace::model_shrinkage::log_prob(std::vector<T_l>&, std::vector<int>&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0:   required from ‘double stan::model::log_prob_grad(const M&, std::vector<double>&, std::vector<int>&, std::vector<double>&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_shrinkage_namespace::model_shrinkage; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::grad_log_prob(SEXP, SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:23:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryOp<stan::math::value_of<const Eigen::Matrix<var_value<double>, -1, 1>&>(const Eigen::Matrix<var_value<double>, -1, 1>&)::<lambda(auto:11&)>::<lambda(const auto:12&)>, const Eigen::Matrix<stan::math::var_value<double>, -1, 1> > > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryOp<stan::math::value_of<const Eigen::Matrix<var_value<double>, -1, 1>&>(const Eigen::Matrix<var_value<double>, -1, 1>&)::<lambda(auto:11&)>::<lambda(const auto:12&)>, const Eigen::Matrix<stan::math::var_value<double>, -1, 1> > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryOp<stan::math::value_of<const Eigen::Matrix<var_value<double>, -1, 1>&>(const Eigen::Matrix<var_value<double>, -1, 1>&)::<lambda(auto:11&)>::<lambda(const auto:12&)>, const Eigen::Matrix<stan::math::var_value<double>, -1, 1> > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_exp_op<double>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryOp<stan::math::value_of<const Eigen::Matrix<var_value<double>, -1, 1>&>(const Eigen::Matrix<var_value<double>, -1, 1>&)::<lambda(auto:11&)>::<lambda(const auto:12&)>, const Eigen::Matrix<stan::math::var_value<double>, -1, 1> > >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryOp<stan::math::value_of<const Eigen::Matrix<var_value<double>, -1, 1>&>(const Eigen::Matrix<var_value<double>, -1, 1>&)::<lambda(auto:11&)>::<lambda(const auto:12&)>, const Eigen::Matrix<stan::math::var_value<double>, -1, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/lb_constrain.hpp:160:0:   required from ‘auto stan::math::lb_constrain(const T&, const L&) [with T = Eigen::Matrix<var_value<double>, -1, 1>; L = int; stan::require_matrix_t<T>* <anonymous> = 0; stan::require_stan_scalar_t<V>* <anonymous> = 0; stan::require_any_st_var<Scalar, Mat>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/lub_constrain.hpp:165:0:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/deserializer.hpp:441:0:   required from ‘auto stan::io::deserializer<T>::read_constrain_lub(const LB&, const UB&, LP&, Sizes ...) [with Ret = std::vector<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, std::allocator<Eigen::Matrix<stan::math::var_value<double>, -1, 1> > >; bool Jacobian = true; LB = int; UB = double; LP = stan::math::var_value<double>; Sizes = {int, int}; T = stan::math::var_value<double>]’
stanExports_shrinkage.h:291:0:   required from ‘stan::scalar_type_t<T2> model_shrinkage_namespace::model_shrinkage::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector<stan::math::var_value<double>, std::allocator<stan::math::var_value<double> > >; VecI = std::vector<int>; stan::require_vector_like_t<VecR>* <anonymous> = 0; stan::require_vector_like_vt<std::is_integral, VecI>* <anonymous> = 0; stan::scalar_type_t<T2> = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
stanExports_shrinkage.h:884:0:   required from ‘T_ model_shrinkage_namespace::model_shrinkage::log_prob(std::vector<T_l>&, std::vector<int>&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0:   required from ‘double stan::model::log_prob_grad(const M&, std::vector<double>&, std::vector<int>&, std::vector<double>&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_shrinkage_namespace::model_shrinkage; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::grad_log_prob(SEXP, SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:23:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, int>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryOp<stan::math::value_of<const Eigen::Matrix<var_value<double>, -1, 1>&>(const Eigen::Matrix<var_value<double>, -1, 1>&)::<lambda(auto:11&)>::<lambda(const auto:12&)>, const Eigen::Matrix<stan::math::var_value<double>, -1, 1> > > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, int>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryOp<stan::math::value_of<const Eigen::Matrix<var_value<double>, -1, 1>&>(const Eigen::Matrix<var_value<double>, -1, 1>&)::<lambda(auto:11&)>::<lambda(const auto:12&)>, const Eigen::Matrix<stan::math::var_value<double>, -1, 1> > > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, int>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryOp<stan::math::value_of<const Eigen::Matrix<var_value<double>, -1, 1>&>(const Eigen::Matrix<var_value<double>, -1, 1>&)::<lambda(auto:11&)>::<lambda(const auto:12&)>, const Eigen::Matrix<stan::math::var_value<double>, -1, 1> > > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_sum_op<double, int>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryOp<stan::math::value_of<const Eigen::Matrix<var_value<double>, -1, 1>&>(const Eigen::Matrix<var_value<double>, -1, 1>&)::<lambda(auto:11&)>::<lambda(const auto:12&)>, const Eigen::Matrix<stan::math::var_value<double>, -1, 1> > > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, int>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryOp<stan::math::value_of<const Eigen::Matrix<var_value<double>, -1, 1>&>(const Eigen::Matrix<var_value<double>, -1, 1>&)::<lambda(auto:11&)>::<lambda(const auto:12&)>, const Eigen::Matrix<stan::math::var_value<double>, -1, 1> > > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/lb_constrain.hpp:160:0:   required from ‘auto stan::math::lb_constrain(const T&, const L&) [with T = Eigen::Matrix<var_value<double>, -1, 1>; L = int; stan::require_matrix_t<T>* <anonymous> = 0; stan::require_stan_scalar_t<V>* <anonymous> = 0; stan::require_any_st_var<Scalar, Mat>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/lub_constrain.hpp:165:0:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/deserializer.hpp:441:0:   required from ‘auto stan::io::deserializer<T>::read_constrain_lub(const LB&, const UB&, LP&, Sizes ...) [with Ret = std::vector<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, std::allocator<Eigen::Matrix<stan::math::var_value<double>, -1, 1> > >; bool Jacobian = true; LB = int; UB = double; LP = stan::math::var_value<double>; Sizes = {int, int}; T = stan::math::var_value<double>]’
stanExports_shrinkage.h:291:0:   required from ‘stan::scalar_type_t<T2> model_shrinkage_namespace::model_shrinkage::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector<stan::math::var_value<double>, std::allocator<stan::math::var_value<double> > >; VecI = std::vector<int>; stan::require_vector_like_t<VecR>* <anonymous> = 0; stan::require_vector_like_vt<std::is_integral, VecI>* <anonymous> = 0; stan::scalar_type_t<T2> = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
stanExports_shrinkage.h:884:0:   required from ‘T_ model_shrinkage_namespace::model_shrinkage::log_prob(std::vector<T_l>&, std::vector<int>&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0:   required from ‘double stan::model::log_prob_grad(const M&, std::vector<double>&, std::vector<int>&, std::vector<double>&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_shrinkage_namespace::model_shrinkage; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::grad_log_prob(SEXP, SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:23:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > > > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/ub_constrain.hpp:146:0:   required from ‘auto stan::math::ub_constrain(const T&, const U&) [with T = Eigen::Matrix<var_value<double>, -1, 1>; U = double; stan::require_matrix_t<T>* <anonymous> = 0; stan::require_stan_scalar_t<V>* <anonymous> = 0; stan::require_any_st_var<Scalar, Mat>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/lub_constrain.hpp:167:0:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/deserializer.hpp:441:0:   required from ‘auto stan::io::deserializer<T>::read_constrain_lub(const LB&, const UB&, LP&, Sizes ...) [with Ret = std::vector<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, std::allocator<Eigen::Matrix<stan::math::var_value<double>, -1, 1> > >; bool Jacobian = true; LB = int; UB = double; LP = stan::math::var_value<double>; Sizes = {int, int}; T = stan::math::var_value<double>]’
stanExports_shrinkage.h:291:0:   required from ‘stan::scalar_type_t<T2> model_shrinkage_namespace::model_shrinkage::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector<stan::math::var_value<double>, std::allocator<stan::math::var_value<double> > >; VecI = std::vector<int>; stan::require_vector_like_t<VecR>* <anonymous> = 0; stan::require_vector_like_vt<std::is_integral, VecI>* <anonymous> = 0; stan::scalar_type_t<T2> = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
stanExports_shrinkage.h:884:0:   required from ‘T_ model_shrinkage_namespace::model_shrinkage::log_prob(std::vector<T_l>&, std::vector<int>&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0:   required from ‘double stan::model::log_prob_grad(const M&, std::vector<double>&, std::vector<int>&, std::vector<double>&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_shrinkage_namespace::model_shrinkage; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::grad_log_prob(SEXP, SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:23:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/ub_constrain.hpp:147:0:   required from ‘auto stan::math::ub_constrain(const T&, const U&) [with T = Eigen::Matrix<var_value<double>, -1, 1>; U = double; stan::require_matrix_t<T>* <anonymous> = 0; stan::require_stan_scalar_t<V>* <anonymous> = 0; stan::require_any_st_var<Scalar, Mat>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/lub_constrain.hpp:167:0:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/deserializer.hpp:441:0:   required from ‘auto stan::io::deserializer<T>::read_constrain_lub(const LB&, const UB&, LP&, Sizes ...) [with Ret = std::vector<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, std::allocator<Eigen::Matrix<stan::math::var_value<double>, -1, 1> > >; bool Jacobian = true; LB = int; UB = double; LP = stan::math::var_value<double>; Sizes = {int, int}; T = stan::math::var_value<double>]’
stanExports_shrinkage.h:291:0:   required from ‘stan::scalar_type_t<T2> model_shrinkage_namespace::model_shrinkage::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector<stan::math::var_value<double>, std::allocator<stan::math::var_value<double> > >; VecI = std::vector<int>; stan::require_vector_like_t<VecR>* <anonymous> = 0; stan::require_vector_like_vt<std::is_integral, VecI>* <anonymous> = 0; stan::scalar_type_t<T2> = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
stanExports_shrinkage.h:884:0:   required from ‘T_ model_shrinkage_namespace::model_shrinkage::log_prob(std::vector<T_l>&, std::vector<int>&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0:   required from ‘double stan::model::log_prob_grad(const M&, std::vector<double>&, std::vector<int>&, std::vector<double>&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_shrinkage_namespace::model_shrinkage; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::grad_log_prob(SEXP, SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:23:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryOp<stan::math::value_of<const Eigen::Matrix<var_value<double>, -1, 1>&>(const Eigen::Matrix<var_value<double>, -1, 1>&)::<lambda(auto:11&)>::<lambda(const auto:12&)>, const Eigen::Matrix<stan::math::var_value<double>, -1, 1> > > > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryOp<stan::math::value_of<const Eigen::Matrix<var_value<double>, -1, 1>&>(const Eigen::Matrix<var_value<double>, -1, 1>&)::<lambda(auto:11&)>::<lambda(const auto:12&)>, const Eigen::Matrix<stan::math::var_value<double>, -1, 1> > > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryOp<stan::math::value_of<const Eigen::Matrix<var_value<double>, -1, 1>&>(const Eigen::Matrix<var_value<double>, -1, 1>&)::<lambda(auto:11&)>::<lambda(const auto:12&)>, const Eigen::Matrix<stan::math::var_value<double>, -1, 1> > > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryOp<stan::math::value_of<const Eigen::Matrix<var_value<double>, -1, 1>&>(const Eigen::Matrix<var_value<double>, -1, 1>&)::<lambda(auto:11&)>::<lambda(const auto:12&)>, const Eigen::Matrix<stan::math::var_value<double>, -1, 1> > > >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryOp<stan::math::value_of<const Eigen::Matrix<var_value<double>, -1, 1>&>(const Eigen::Matrix<var_value<double>, -1, 1>&)::<lambda(auto:11&)>::<lambda(const auto:12&)>, const Eigen::Matrix<stan::math::var_value<double>, -1, 1> > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/ub_constrain.hpp:163:0:   required from ‘auto stan::math::ub_constrain(const T&, const U&) [with T = Eigen::Matrix<var_value<double>, -1, 1>; U = double; stan::require_matrix_t<T>* <anonymous> = 0; stan::require_stan_scalar_t<V>* <anonymous> = 0; stan::require_any_st_var<Scalar, Mat>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/lub_constrain.hpp:167:0:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/deserializer.hpp:441:0:   required from ‘auto stan::io::deserializer<T>::read_constrain_lub(const LB&, const UB&, LP&, Sizes ...) [with Ret = std::vector<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, std::allocator<Eigen::Matrix<stan::math::var_value<double>, -1, 1> > >; bool Jacobian = true; LB = int; UB = double; LP = stan::math::var_value<double>; Sizes = {int, int}; T = stan::math::var_value<double>]’
stanExports_shrinkage.h:291:0:   required from ‘stan::scalar_type_t<T2> model_shrinkage_namespace::model_shrinkage::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector<stan::math::var_value<double>, std::allocator<stan::math::var_value<double> > >; VecI = std::vector<int>; stan::require_vector_like_t<VecR>* <anonymous> = 0; stan::require_vector_like_vt<std::is_integral, VecI>* <anonymous> = 0; stan::scalar_type_t<T2> = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
stanExports_shrinkage.h:884:0:   required from ‘T_ model_shrinkage_namespace::model_shrinkage::log_prob(std::vector<T_l>&, std::vector<int>&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0:   required from ‘double stan::model::log_prob_grad(const M&, std::vector<double>&, std::vector<int>&, std::vector<double>&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_shrinkage_namespace::model_shrinkage; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::grad_log_prob(SEXP, SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:23:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<stan::math::apply_scalar_unary<stan::math::inv_logit_fun, Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >, void>::apply(const Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >&)::<lambda(auto:3&&)>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryOp<stan::math::apply_scalar_unary<stan::math::inv_logit_fun, Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >, void>::apply(const Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >&)::<lambda(auto:3&&)>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseUnaryOp<stan::math::apply_scalar_unary<stan::math::inv_logit_fun, Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >, void>::apply(const Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >&)::<lambda(auto:3&&)>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl<stan::math::apply_scalar_unary<stan::math::inv_logit_fun, Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >, void>::apply(const Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >&)::<lambda(auto:3&&)>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp<stan::math::apply_scalar_unary<stan::math::inv_logit_fun, Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >, void>::apply(const Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >&)::<lambda(auto:3&&)>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:62:23:   required from ‘static auto stan::math::apply_scalar_unary<F, T, typename std::enable_if<stan::is_eigen<typename std::decay<_Tp2>::type>::value, void>::type>::apply(const T&) [with F = stan::math::inv_logit_fun; T = Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:72:38:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/deserializer.hpp:441:0:   required from ‘auto stan::io::deserializer<T>::read_constrain_lub(const LB&, const UB&, LP&, Sizes ...) [with Ret = std::vector<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, std::allocator<Eigen::Matrix<stan::math::var_value<double>, -1, 1> > >; bool Jacobian = true; LB = int; UB = double; LP = stan::math::var_value<double>; Sizes = {int, int}; T = stan::math::var_value<double>]’
stanExports_shrinkage.h:291:0:   required from ‘stan::scalar_type_t<T2> model_shrinkage_namespace::model_shrinkage::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector<stan::math::var_value<double>, std::allocator<stan::math::var_value<double> > >; VecI = std::vector<int>; stan::require_vector_like_t<VecR>* <anonymous> = 0; stan::require_vector_like_vt<std::is_integral, VecI>* <anonymous> = 0; stan::scalar_type_t<T2> = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
stanExports_shrinkage.h:884:0:   required from ‘T_ model_shrinkage_namespace::model_shrinkage::log_prob(std::vector<T_l>&, std::vector<int>&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0:   required from ‘double stan::model::log_prob_grad(const M&, std::vector<double>&, std::vector<int>&, std::vector<double>&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_shrinkage_namespace::model_shrinkage; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::grad_log_prob(SEXP, SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:23:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/lub_constrain.hpp:173:0:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/deserializer.hpp:441:0:   required from ‘auto stan::io::deserializer<T>::read_constrain_lub(const LB&, const UB&, LP&, Sizes ...) [with Ret = std::vector<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, std::allocator<Eigen::Matrix<stan::math::var_value<double>, -1, 1> > >; bool Jacobian = true; LB = int; UB = double; LP = stan::math::var_value<double>; Sizes = {int, int}; T = stan::math::var_value<double>]’
stanExports_shrinkage.h:291:0:   required from ‘stan::scalar_type_t<T2> model_shrinkage_namespace::model_shrinkage::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector<stan::math::var_value<double>, std::allocator<stan::math::var_value<double> > >; VecI = std::vector<int>; stan::require_vector_like_t<VecR>* <anonymous> = 0; stan::require_vector_like_vt<std::is_integral, VecI>* <anonymous> = 0; stan::scalar_type_t<T2> = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
stanExports_shrinkage.h:884:0:   required from ‘T_ model_shrinkage_namespace::model_shrinkage::log_prob(std::vector<T_l>&, std::vector<int>&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0:   required from ‘double stan::model::log_prob_grad(const M&, std::vector<double>&, std::vector<int>&, std::vector<double>&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_shrinkage_namespace::model_shrinkage; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::grad_log_prob(SEXP, SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:23:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, int>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, int>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, int>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_sum_op<double, int>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, int>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/lub_constrain.hpp:173:0:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/deserializer.hpp:441:0:   required from ‘auto stan::io::deserializer<T>::read_constrain_lub(const LB&, const UB&, LP&, Sizes ...) [with Ret = std::vector<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, std::allocator<Eigen::Matrix<stan::math::var_value<double>, -1, 1> > >; bool Jacobian = true; LB = int; UB = double; LP = stan::math::var_value<double>; Sizes = {int, int}; T = stan::math::var_value<double>]’
stanExports_shrinkage.h:291:0:   required from ‘stan::scalar_type_t<T2> model_shrinkage_namespace::model_shrinkage::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector<stan::math::var_value<double>, std::allocator<stan::math::var_value<double> > >; VecI = std::vector<int>; stan::require_vector_like_t<VecR>* <anonymous> = 0; stan::require_vector_like_vt<std::is_integral, VecI>* <anonymous> = 0; stan::scalar_type_t<T2> = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
stanExports_shrinkage.h:884:0:   required from ‘T_ model_shrinkage_namespace::model_shrinkage::log_prob(std::vector<T_l>&, std::vector<int>&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0:   required from ‘double stan::model::log_prob_grad(const M&, std::vector<double>&, std::vector<int>&, std::vector<double>&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_shrinkage_namespace::model_shrinkage; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::grad_log_prob(SEXP, SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:23:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/lub_constrain.hpp:178:0:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/deserializer.hpp:441:0:   required from ‘auto stan::io::deserializer<T>::read_constrain_lub(const LB&, const UB&, LP&, Sizes ...) [with Ret = std::vector<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, std::allocator<Eigen::Matrix<stan::math::var_value<double>, -1, 1> > >; bool Jacobian = true; LB = int; UB = double; LP = stan::math::var_value<double>; Sizes = {int, int}; T = stan::math::var_value<double>]’
stanExports_shrinkage.h:291:0:   required from ‘stan::scalar_type_t<T2> model_shrinkage_namespace::model_shrinkage::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector<stan::math::var_value<double>, std::allocator<stan::math::var_value<double> > >; VecI = std::vector<int>; stan::require_vector_like_t<VecR>* <anonymous> = 0; stan::require_vector_like_vt<std::is_integral, VecI>* <anonymous> = 0; stan::scalar_type_t<T2> = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
stanExports_shrinkage.h:884:0:   required from ‘T_ model_shrinkage_namespace::model_shrinkage::log_prob(std::vector<T_l>&, std::vector<int>&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0:   required from ‘double stan::model::log_prob_grad(const M&, std::vector<double>&, std::vector<int>&, std::vector<double>&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_shrinkage_namespace::model_shrinkage; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::grad_log_prob(SEXP, SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:23:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/lub_constrain.hpp:178:0:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/deserializer.hpp:441:0:   required from ‘auto stan::io::deserializer<T>::read_constrain_lub(const LB&, const UB&, LP&, Sizes ...) [with Ret = std::vector<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, std::allocator<Eigen::Matrix<stan::math::var_value<double>, -1, 1> > >; bool Jacobian = true; LB = int; UB = double; LP = stan::math::var_value<double>; Sizes = {int, int}; T = stan::math::var_value<double>]’
stanExports_shrinkage.h:291:0:   required from ‘stan::scalar_type_t<T2> model_shrinkage_namespace::model_shrinkage::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector<stan::math::var_value<double>, std::allocator<stan::math::var_value<double> > >; VecI = std::vector<int>; stan::require_vector_like_t<VecR>* <anonymous> = 0; stan::require_vector_like_vt<std::is_integral, VecI>* <anonymous> = 0; stan::scalar_type_t<T2> = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
stanExports_shrinkage.h:884:0:   required from ‘T_ model_shrinkage_namespace::model_shrinkage::log_prob(std::vector<T_l>&, std::vector<int>&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0:   required from ‘double stan::model::log_prob_grad(const M&, std::vector<double>&, std::vector<int>&, std::vector<double>&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_shrinkage_namespace::model_shrinkage; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::grad_log_prob(SEXP, SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:23:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/lub_constrain.hpp:178:0:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/deserializer.hpp:441:0:   required from ‘auto stan::io::deserializer<T>::read_constrain_lub(const LB&, const UB&, LP&, Sizes ...) [with Ret = std::vector<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, std::allocator<Eigen::Matrix<stan::math::var_value<double>, -1, 1> > >; bool Jacobian = true; LB = int; UB = double; LP = stan::math::var_value<double>; Sizes = {int, int}; T = stan::math::var_value<double>]’
stanExports_shrinkage.h:291:0:   required from ‘stan::scalar_type_t<T2> model_shrinkage_namespace::model_shrinkage::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector<stan::math::var_value<double>, std::allocator<stan::math::var_value<double> > >; VecI = std::vector<int>; stan::require_vector_like_t<VecR>* <anonymous> = 0; stan::require_vector_like_vt<std::is_integral, VecI>* <anonymous> = 0; stan::scalar_type_t<T2> = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
stanExports_shrinkage.h:884:0:   required from ‘T_ model_shrinkage_namespace::model_shrinkage::log_prob(std::vector<T_l>&, std::vector<int>&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0:   required from ‘double stan::model::log_prob_grad(const M&, std::vector<double>&, std::vector<int>&, std::vector<double>&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_shrinkage_namespace::model_shrinkage; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::grad_log_prob(SEXP, SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:23:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/lub_constrain.hpp:178:0:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/deserializer.hpp:441:0:   required from ‘auto stan::io::deserializer<T>::read_constrain_lub(const LB&, const UB&, LP&, Sizes ...) [with Ret = std::vector<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, std::allocator<Eigen::Matrix<stan::math::var_value<double>, -1, 1> > >; bool Jacobian = true; LB = int; UB = double; LP = stan::math::var_value<double>; Sizes = {int, int}; T = stan::math::var_value<double>]’
stanExports_shrinkage.h:291:0:   required from ‘stan::scalar_type_t<T2> model_shrinkage_namespace::model_shrinkage::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector<stan::math::var_value<double>, std::allocator<stan::math::var_value<double> > >; VecI = std::vector<int>; stan::require_vector_like_t<VecR>* <anonymous> = 0; stan::require_vector_like_vt<std::is_integral, VecI>* <anonymous> = 0; stan::scalar_type_t<T2> = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
stanExports_shrinkage.h:884:0:   required from ‘T_ model_shrinkage_namespace::model_shrinkage::log_prob(std::vector<T_l>&, std::vector<int>&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0:   required from ‘double stan::model::log_prob_grad(const M&, std::vector<double>&, std::vector<int>&, std::vector<double>&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_shrinkage_namespace::model_shrinkage; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::grad_log_prob(SEXP, SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:23:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/lub_constrain.hpp:182:0:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/deserializer.hpp:441:0:   required from ‘auto stan::io::deserializer<T>::read_constrain_lub(const LB&, const UB&, LP&, Sizes ...) [with Ret = std::vector<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, std::allocator<Eigen::Matrix<stan::math::var_value<double>, -1, 1> > >; bool Jacobian = true; LB = int; UB = double; LP = stan::math::var_value<double>; Sizes = {int, int}; T = stan::math::var_value<double>]’
stanExports_shrinkage.h:291:0:   required from ‘stan::scalar_type_t<T2> model_shrinkage_namespace::model_shrinkage::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector<stan::math::var_value<double>, std::allocator<stan::math::var_value<double> > >; VecI = std::vector<int>; stan::require_vector_like_t<VecR>* <anonymous> = 0; stan::require_vector_like_vt<std::is_integral, VecI>* <anonymous> = 0; stan::scalar_type_t<T2> = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
stanExports_shrinkage.h:884:0:   required from ‘T_ model_shrinkage_namespace::model_shrinkage::log_prob(std::vector<T_l>&, std::vector<int>&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0:   required from ‘double stan::model::log_prob_grad(const M&, std::vector<double>&, std::vector<int>&, std::vector<double>&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_shrinkage_namespace::model_shrinkage; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::grad_log_prob(SEXP, SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:23:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/lb_constrain.hpp:197:0:   required from ‘auto stan::math::lb_constrain(const T&, const L&, stan::return_type_t<T1, T2>&) [with T = Eigen::Matrix<var_value<double>, -1, 1>; L = int; stan::require_matrix_t<T>* <anonymous> = 0; stan::require_stan_scalar_t<V>* <anonymous> = 0; stan::require_any_st_var<Scalar, Mat>* <anonymous> = 0; stan::return_type_t<T1, T2> = var_value<double>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/lub_constrain.hpp:209:0:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/deserializer.hpp:441:0:   required from ‘auto stan::io::deserializer<T>::read_constrain_lub(const LB&, const UB&, LP&, Sizes ...) [with Ret = std::vector<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, std::allocator<Eigen::Matrix<stan::math::var_value<double>, -1, 1> > >; bool Jacobian = true; LB = int; UB = double; LP = stan::math::var_value<double>; Sizes = {int, int}; T = stan::math::var_value<double>]’
stanExports_shrinkage.h:291:0:   required from ‘stan::scalar_type_t<T2> model_shrinkage_namespace::model_shrinkage::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector<stan::math::var_value<double>, std::allocator<stan::math::var_value<double> > >; VecI = std::vector<int>; stan::require_vector_like_t<VecR>* <anonymous> = 0; stan::require_vector_like_vt<std::is_integral, VecI>* <anonymous> = 0; stan::scalar_type_t<T2> = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
stanExports_shrinkage.h:884:0:   required from ‘T_ model_shrinkage_namespace::model_shrinkage::log_prob(std::vector<T_l>&, std::vector<int>&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0:   required from ‘double stan::model::log_prob_grad(const M&, std::vector<double>&, std::vector<int>&, std::vector<double>&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_shrinkage_namespace::model_shrinkage; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::grad_log_prob(SEXP, SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:23:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_exp_op<double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/ub_constrain.hpp:215:0:   required from ‘auto stan::math::ub_constrain(const T&, const U&, stan::return_type_t<T1, T2>&) [with T = Eigen::Matrix<var_value<double>, -1, 1>; U = double; stan::require_matrix_t<T>* <anonymous> = 0; stan::require_stan_scalar_t<V>* <anonymous> = 0; stan::require_any_st_var<Scalar, Mat>* <anonymous> = 0; stan::return_type_t<T1, T2> = var_value<double>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/lub_constrain.hpp:211:0:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/deserializer.hpp:441:0:   required from ‘auto stan::io::deserializer<T>::read_constrain_lub(const LB&, const UB&, LP&, Sizes ...) [with Ret = std::vector<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, std::allocator<Eigen::Matrix<stan::math::var_value<double>, -1, 1> > >; bool Jacobian = true; LB = int; UB = double; LP = stan::math::var_value<double>; Sizes = {int, int}; T = stan::math::var_value<double>]’
stanExports_shrinkage.h:291:0:   required from ‘stan::scalar_type_t<T2> model_shrinkage_namespace::model_shrinkage::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector<stan::math::var_value<double>, std::allocator<stan::math::var_value<double> > >; VecI = std::vector<int>; stan::require_vector_like_t<VecR>* <anonymous> = 0; stan::require_vector_like_vt<std::is_integral, VecI>* <anonymous> = 0; stan::scalar_type_t<T2> = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
stanExports_shrinkage.h:884:0:   required from ‘T_ model_shrinkage_namespace::model_shrinkage::log_prob(std::vector<T_l>&, std::vector<int>&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0:   required from ‘double stan::model::log_prob_grad(const M&, std::vector<double>&, std::vector<int>&, std::vector<double>&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_shrinkage_namespace::model_shrinkage; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::grad_log_prob(SEXP, SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:23:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/ub_constrain.hpp:215:0:   required from ‘auto stan::math::ub_constrain(const T&, const U&, stan::return_type_t<T1, T2>&) [with T = Eigen::Matrix<var_value<double>, -1, 1>; U = double; stan::require_matrix_t<T>* <anonymous> = 0; stan::require_stan_scalar_t<V>* <anonymous> = 0; stan::require_any_st_var<Scalar, Mat>* <anonymous> = 0; stan::return_type_t<T1, T2> = var_value<double>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/lub_constrain.hpp:211:0:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/deserializer.hpp:441:0:   required from ‘auto stan::io::deserializer<T>::read_constrain_lub(const LB&, const UB&, LP&, Sizes ...) [with Ret = std::vector<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, std::allocator<Eigen::Matrix<stan::math::var_value<double>, -1, 1> > >; bool Jacobian = true; LB = int; UB = double; LP = stan::math::var_value<double>; Sizes = {int, int}; T = stan::math::var_value<double>]’
stanExports_shrinkage.h:291:0:   required from ‘stan::scalar_type_t<T2> model_shrinkage_namespace::model_shrinkage::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector<stan::math::var_value<double>, std::allocator<stan::math::var_value<double> > >; VecI = std::vector<int>; stan::require_vector_like_t<VecR>* <anonymous> = 0; stan::require_vector_like_vt<std::is_integral, VecI>* <anonymous> = 0; stan::scalar_type_t<T2> = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
stanExports_shrinkage.h:884:0:   required from ‘T_ model_shrinkage_namespace::model_shrinkage::log_prob(std::vector<T_l>&, std::vector<int>&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0:   required from ‘double stan::model::log_prob_grad(const M&, std::vector<double>&, std::vector<int>&, std::vector<double>&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_shrinkage_namespace::model_shrinkage; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::grad_log_prob(SEXP, SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:23:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<stan::math::value_of<arena_matrix<Eigen::Matrix<var_value<double>, -1, 1> >&>(arena_matrix<Eigen::Matrix<var_value<double>, -1, 1> >&)::<lambda(auto:11&)>::<lambda(const auto:12&)>, const Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryOp<stan::math::value_of<arena_matrix<Eigen::Matrix<var_value<double>, -1, 1> >&>(arena_matrix<Eigen::Matrix<var_value<double>, -1, 1> >&)::<lambda(auto:11&)>::<lambda(const auto:12&)>, const Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseUnaryOp<stan::math::value_of<arena_matrix<Eigen::Matrix<var_value<double>, -1, 1> >&>(arena_matrix<Eigen::Matrix<var_value<double>, -1, 1> >&)::<lambda(auto:11&)>::<lambda(const auto:12&)>, const Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl<stan::math::value_of<arena_matrix<Eigen::Matrix<var_value<double>, -1, 1> >&>(arena_matrix<Eigen::Matrix<var_value<double>, -1, 1> >&)::<lambda(auto:11&)>::<lambda(const auto:12&)>, const Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp<stan::math::value_of<arena_matrix<Eigen::Matrix<var_value<double>, -1, 1> >&>(arena_matrix<Eigen::Matrix<var_value<double>, -1, 1> >&)::<lambda(auto:11&)>::<lambda(const auto:12&)>, const Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/value_of.hpp:75:75:   required from ‘stan::math::value_of<arena_matrix<Eigen::Matrix<var_value<double>, -1, 1> >&>(arena_matrix<Eigen::Matrix<var_value<double>, -1, 1> >&)::<lambda(auto:11&)> [with auto:11 = stan::math::arena_matrix<Eigen::Matrix<stan::math::var_value<double>, -1, 1> >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/holder.hpp:370:41:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/deserializer.hpp:441:0:   required from ‘auto stan::io::deserializer<T>::read_constrain_lub(const LB&, const UB&, LP&, Sizes ...) [with Ret = std::vector<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, std::allocator<Eigen::Matrix<stan::math::var_value<double>, -1, 1> > >; bool Jacobian = true; LB = int; UB = double; LP = stan::math::var_value<double>; Sizes = {int, int}; T = stan::math::var_value<double>]’
stanExports_shrinkage.h:291:0:   required from ‘stan::scalar_type_t<T2> model_shrinkage_namespace::model_shrinkage::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector<stan::math::var_value<double>, std::allocator<stan::math::var_value<double> > >; VecI = std::vector<int>; stan::require_vector_like_t<VecR>* <anonymous> = 0; stan::require_vector_like_vt<std::is_integral, VecI>* <anonymous> = 0; stan::scalar_type_t<T2> = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
stanExports_shrinkage.h:884:0:   required from ‘T_ model_shrinkage_namespace::model_shrinkage::log_prob(std::vector<T_l>&, std::vector<int>&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0:   required from ‘double stan::model::log_prob_grad(const M&, std::vector<double>&, std::vector<int>&, std::vector<double>&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_shrinkage_namespace::model_shrinkage; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::grad_log_prob(SEXP, SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:23:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<Eigen::CwiseUnaryOp<stan::math::value_of<arena_matrix<Eigen::Matrix<var_value<double>, -1, 1> >&>(arena_matrix<Eigen::Matrix<var_value<double>, -1, 1> >&)::<lambda(auto:11&)>::<lambda(const auto:12&)>, const Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::ArrayWrapper<Eigen::CwiseUnaryOp<stan::math::value_of<arena_matrix<Eigen::Matrix<var_value<double>, -1, 1> >&>(arena_matrix<Eigen::Matrix<var_value<double>, -1, 1> >&)::<lambda(auto:11&)>::<lambda(const auto:12&)>, const Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::ArrayWrapper<Eigen::CwiseUnaryOp<stan::math::value_of<arena_matrix<Eigen::Matrix<var_value<double>, -1, 1> >&>(arena_matrix<Eigen::Matrix<var_value<double>, -1, 1> >&)::<lambda(auto:11&)>::<lambda(const auto:12&)>, const Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7:   required from ‘class Eigen::ArrayWrapper<Eigen::CwiseUnaryOp<stan::math::value_of<arena_matrix<Eigen::Matrix<var_value<double>, -1, 1> >&>(arena_matrix<Eigen::Matrix<var_value<double>, -1, 1> >&)::<lambda(auto:11&)>::<lambda(const auto:12&)>, const Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/lub_constrain.hpp:215:0:   required from ‘auto stan::math::lub_constrain(const T&, const L&, const U&, stan::return_type_t<T_x, T_sigma, T_l>&) [with T = Eigen::Matrix<var_value<double>, -1, 1>; L = int; U = double; stan::require_matrix_t<T>* <anonymous> = 0; stan::require_all_stan_scalar_t<L, U>* <anonymous> = 0; stan::require_var_t<typename stan::return_type<T_x, T_sigma, T_l>::type>* <anonymous> = 0; stan::return_type_t<T_x, T_sigma, T_l> = var_value<double>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/lub_constrain.hpp:266:27:   required from ‘auto stan::math::lub_constrain(const std::vector<T>&, const L&, const U&, stan::return_type_t<T_x, T_sigma, T_l>&) [with T = Eigen::Matrix<var_value<double>, -1, 1>; L = int; U = double; stan::require_all_not_std_vector_t<L, U>* <anonymous> = 0; stan::return_type_t<T_x, T_sigma, T_l> = var_value<double>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/deserializer.hpp:441:0:   required from ‘auto stan::io::deserializer<T>::read_constrain_lub(const LB&, const UB&, LP&, Sizes ...) [with Ret = std::vector<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, std::allocator<Eigen::Matrix<stan::math::var_value<double>, -1, 1> > >; bool Jacobian = true; LB = int; UB = double; LP = stan::math::var_value<double>; Sizes = {int, int}; T = stan::math::var_value<double>]’
stanExports_shrinkage.h:291:0:   required from ‘stan::scalar_type_t<T2> model_shrinkage_namespace::model_shrinkage::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector<stan::math::var_value<double>, std::allocator<stan::math::var_value<double> > >; VecI = std::vector<int>; stan::require_vector_like_t<VecR>* <anonymous> = 0; stan::require_vector_like_vt<std::is_integral, VecI>* <anonymous> = 0; stan::scalar_type_t<T2> = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
stanExports_shrinkage.h:884:0:   required from ‘T_ model_shrinkage_namespace::model_shrinkage::log_prob(std::vector<T_l>&, std::vector<int>&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0:   required from ‘double stan::model::log_prob_grad(const M&, std::vector<double>&, std::vector<int>&, std::vector<double>&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_shrinkage_namespace::model_shrinkage; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::grad_log_prob(SEXP, SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:23:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryOp<stan::math::value_of<arena_matrix<Eigen::Matrix<var_value<double>, -1, 1> >&>(arena_matrix<Eigen::Matrix<var_value<double>, -1, 1> >&)::<lambda(auto:11&)>::<lambda(const auto:12&)>, const Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryOp<stan::math::value_of<arena_matrix<Eigen::Matrix<var_value<double>, -1, 1> >&>(arena_matrix<Eigen::Matrix<var_value<double>, -1, 1> >&)::<lambda(auto:11&)>::<lambda(const auto:12&)>, const Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryOp<stan::math::value_of<arena_matrix<Eigen::Matrix<var_value<double>, -1, 1> >&>(arena_matrix<Eigen::Matrix<var_value<double>, -1, 1> >&)::<lambda(auto:11&)>::<lambda(const auto:12&)>, const Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_abs_op<double>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryOp<stan::math::value_of<arena_matrix<Eigen::Matrix<var_value<double>, -1, 1> >&>(arena_matrix<Eigen::Matrix<var_value<double>, -1, 1> >&)::<lambda(auto:11&)>::<lambda(const auto:12&)>, const Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryOp<stan::math::value_of<arena_matrix<Eigen::Matrix<var_value<double>, -1, 1> >&>(arena_matrix<Eigen::Matrix<var_value<double>, -1, 1> >&)::<lambda(auto:11&)>::<lambda(const auto:12&)>, const Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/lub_constrain.hpp:215:0:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/deserializer.hpp:441:0:   required from ‘auto stan::io::deserializer<T>::read_constrain_lub(const LB&, const UB&, LP&, Sizes ...) [with Ret = std::vector<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, std::allocator<Eigen::Matrix<stan::math::var_value<double>, -1, 1> > >; bool Jacobian = true; LB = int; UB = double; LP = stan::math::var_value<double>; Sizes = {int, int}; T = stan::math::var_value<double>]’
stanExports_shrinkage.h:291:0:   required from ‘stan::scalar_type_t<T2> model_shrinkage_namespace::model_shrinkage::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector<stan::math::var_value<double>, std::allocator<stan::math::var_value<double> > >; VecI = std::vector<int>; stan::require_vector_like_t<VecR>* <anonymous> = 0; stan::require_vector_like_vt<std::is_integral, VecI>* <anonymous> = 0; stan::scalar_type_t<T2> = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
stanExports_shrinkage.h:884:0:   required from ‘T_ model_shrinkage_namespace::model_shrinkage::log_prob(std::vector<T_l>&, std::vector<int>&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0:   required from ‘double stan::model::log_prob_grad(const M&, std::vector<double>&, std::vector<int>&, std::vector<double>&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_shrinkage_namespace::model_shrinkage; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::grad_log_prob(SEXP, SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:23:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryOp<stan::math::value_of<arena_matrix<Eigen::Matrix<var_value<double>, -1, 1> >&>(arena_matrix<Eigen::Matrix<var_value<double>, -1, 1> >&)::<lambda(auto:11&)>::<lambda(const auto:12&)>, const Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > > > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryOp<stan::math::value_of<arena_matrix<Eigen::Matrix<var_value<double>, -1, 1> >&>(arena_matrix<Eigen::Matrix<var_value<double>, -1, 1> >&)::<lambda(auto:11&)>::<lambda(const auto:12&)>, const Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryOp<stan::math::value_of<arena_matrix<Eigen::Matrix<var_value<double>, -1, 1> >&>(arena_matrix<Eigen::Matrix<var_value<double>, -1, 1> >&)::<lambda(auto:11&)>::<lambda(const auto:12&)>, const Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryOp<stan::math::value_of<arena_matrix<Eigen::Matrix<var_value<double>, -1, 1> >&>(arena_matrix<Eigen::Matrix<var_value<double>, -1, 1> >&)::<lambda(auto:11&)>::<lambda(const auto:12&)>, const Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryOp<stan::math::value_of<arena_matrix<Eigen::Matrix<var_value<double>, -1, 1> >&>(arena_matrix<Eigen::Matrix<var_value<double>, -1, 1> >&)::<lambda(auto:11&)>::<lambda(const auto:12&)>, const Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/lub_constrain.hpp:215:0:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/deserializer.hpp:441:0:   required from ‘auto stan::io::deserializer<T>::read_constrain_lub(const LB&, const UB&, LP&, Sizes ...) [with Ret = std::vector<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, std::allocator<Eigen::Matrix<stan::math::var_value<double>, -1, 1> > >; bool Jacobian = true; LB = int; UB = double; LP = stan::math::var_value<double>; Sizes = {int, int}; T = stan::math::var_value<double>]’
stanExports_shrinkage.h:291:0:   required from ‘stan::scalar_type_t<T2> model_shrinkage_namespace::model_shrinkage::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector<stan::math::var_value<double>, std::allocator<stan::math::var_value<double> > >; VecI = std::vector<int>; stan::require_vector_like_t<VecR>* <anonymous> = 0; stan::require_vector_like_vt<std::is_integral, VecI>* <anonymous> = 0; stan::scalar_type_t<T2> = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
stanExports_shrinkage.h:884:0:   required from ‘T_ model_shrinkage_namespace::model_shrinkage::log_prob(std::vector<T_l>&, std::vector<int>&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0:   required from ‘double stan::model::log_prob_grad(const M&, std::vector<double>&, std::vector<int>&, std::vector<double>&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_shrinkage_namespace::model_shrinkage; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::grad_log_prob(SEXP, SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:23:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<stan::math::apply_scalar_unary<stan::math::log1p_exp_fun, stan::math::arena_matrix<Eigen::Array<double, -1, 1>, void>, void>::apply(const stan::math::arena_matrix<Eigen::Array<double, -1, 1>, void>&)::<lambda(auto:3&&)>, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryOp<stan::math::apply_scalar_unary<stan::math::log1p_exp_fun, stan::math::arena_matrix<Eigen::Array<double, -1, 1>, void>, void>::apply(const stan::math::arena_matrix<Eigen::Array<double, -1, 1>, void>&)::<lambda(auto:3&&)>, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseUnaryOp<stan::math::apply_scalar_unary<stan::math::log1p_exp_fun, stan::math::arena_matrix<Eigen::Array<double, -1, 1>, void>, void>::apply(const stan::math::arena_matrix<Eigen::Array<double, -1, 1>, void>&)::<lambda(auto:3&&)>, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl<stan::math::apply_scalar_unary<stan::math::log1p_exp_fun, stan::math::arena_matrix<Eigen::Array<double, -1, 1>, void>, void>::apply(const stan::math::arena_matrix<Eigen::Array<double, -1, 1>, void>&)::<lambda(auto:3&&)>, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp<stan::math::apply_scalar_unary<stan::math::log1p_exp_fun, stan::math::arena_matrix<Eigen::Array<double, -1, 1>, void>, void>::apply(const stan::math::arena_matrix<Eigen::Array<double, -1, 1>, void>&)::<lambda(auto:3&&)>, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:62:23:   required from ‘static auto stan::math::apply_scalar_unary<F, T, typename std::enable_if<stan::is_eigen<typename std::decay<_Tp2>::type>::value, void>::type>::apply(const T&) [with F = stan::math::log1p_exp_fun; T = stan::math::arena_matrix<Eigen::Array<double, -1, 1>, void>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:72:38:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/deserializer.hpp:441:0:   required from ‘auto stan::io::deserializer<T>::read_constrain_lub(const LB&, const UB&, LP&, Sizes ...) [with Ret = std::vector<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, std::allocator<Eigen::Matrix<stan::math::var_value<double>, -1, 1> > >; bool Jacobian = true; LB = int; UB = double; LP = stan::math::var_value<double>; Sizes = {int, int}; T = stan::math::var_value<double>]’
stanExports_shrinkage.h:291:0:   required from ‘stan::scalar_type_t<T2> model_shrinkage_namespace::model_shrinkage::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector<stan::math::var_value<double>, std::allocator<stan::math::var_value<double> > >; VecI = std::vector<int>; stan::require_vector_like_t<VecR>* <anonymous> = 0; stan::require_vector_like_vt<std::is_integral, VecI>* <anonymous> = 0; stan::scalar_type_t<T2> = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
stanExports_shrinkage.h:884:0:   required from ‘T_ model_shrinkage_namespace::model_shrinkage::log_prob(std::vector<T_l>&, std::vector<int>&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0:   required from ‘double stan::model::log_prob_grad(const M&, std::vector<double>&, std::vector<int>&, std::vector<double>&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_shrinkage_namespace::model_shrinkage; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::grad_log_prob(SEXP, SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:23:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseUnaryOp<stan::math::apply_scalar_unary<stan::math::log1p_exp_fun, stan::math::arena_matrix<Eigen::Array<double, -1, 1>, void>, void>::apply(const stan::math::arena_matrix<Eigen::Array<double, -1, 1>, void>&)::<lambda(auto:3&&)>, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseUnaryOp<stan::math::apply_scalar_unary<stan::math::log1p_exp_fun, stan::math::arena_matrix<Eigen::Array<double, -1, 1>, void>, void>::apply(const stan::math::arena_matrix<Eigen::Array<double, -1, 1>, void>&)::<lambda(auto:3&&)>, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseUnaryOp<stan::math::apply_scalar_unary<stan::math::log1p_exp_fun, stan::math::arena_matrix<Eigen::Array<double, -1, 1>, void>, void>::apply(const stan::math::arena_matrix<Eigen::Array<double, -1, 1>, void>&)::<lambda(auto:3&&)>, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseUnaryOp<stan::math::apply_scalar_unary<stan::math::log1p_exp_fun, stan::math::arena_matrix<Eigen::Array<double, -1, 1>, void>, void>::apply(const stan::math::arena_matrix<Eigen::Array<double, -1, 1>, void>&)::<lambda(auto:3&&)>, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseUnaryOp<stan::math::apply_scalar_unary<stan::math::log1p_exp_fun, stan::math::arena_matrix<Eigen::Array<double, -1, 1>, void>, void>::apply(const stan::math::arena_matrix<Eigen::Array<double, -1, 1>, void>&)::<lambda(auto:3&&)>, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/lub_constrain.hpp:217:0:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/deserializer.hpp:441:0:   required from ‘auto stan::io::deserializer<T>::read_constrain_lub(const LB&, const UB&, LP&, Sizes ...) [with Ret = std::vector<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, std::allocator<Eigen::Matrix<stan::math::var_value<double>, -1, 1> > >; bool Jacobian = true; LB = int; UB = double; LP = stan::math::var_value<double>; Sizes = {int, int}; T = stan::math::var_value<double>]’
stanExports_shrinkage.h:291:0:   required from ‘stan::scalar_type_t<T2> model_shrinkage_namespace::model_shrinkage::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector<stan::math::var_value<double>, std::allocator<stan::math::var_value<double> > >; VecI = std::vector<int>; stan::require_vector_like_t<VecR>* <anonymous> = 0; stan::require_vector_like_vt<std::is_integral, VecI>* <anonymous> = 0; stan::scalar_type_t<T2> = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
stanExports_shrinkage.h:884:0:   required from ‘T_ model_shrinkage_namespace::model_shrinkage::log_prob(std::vector<T_l>&, std::vector<int>&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0:   required from ‘double stan::model::log_prob_grad(const M&, std::vector<double>&, std::vector<int>&, std::vector<double>&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_shrinkage_namespace::model_shrinkage; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::grad_log_prob(SEXP, SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:23:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseUnaryOp<stan::math::apply_scalar_unary<stan::math::log1p_exp_fun, stan::math::arena_matrix<Eigen::Array<double, -1, 1>, void>, void>::apply(const stan::math::arena_matrix<Eigen::Array<double, -1, 1>, void>&)::<lambda(auto:3&&)>, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseUnaryOp<stan::math::apply_scalar_unary<stan::math::log1p_exp_fun, stan::math::arena_matrix<Eigen::Array<double, -1, 1>, void>, void>::apply(const stan::math::arena_matrix<Eigen::Array<double, -1, 1>, void>&)::<lambda(auto:3&&)>, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseUnaryOp<stan::math::apply_scalar_unary<stan::math::log1p_exp_fun, stan::math::arena_matrix<Eigen::Array<double, -1, 1>, void>, void>::apply(const stan::math::arena_matrix<Eigen::Array<double, -1, 1>, void>&)::<lambda(auto:3&&)>, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseUnaryOp<stan::math::apply_scalar_unary<stan::math::log1p_exp_fun, stan::math::arena_matrix<Eigen::Array<double, -1, 1>, void>, void>::apply(const stan::math::arena_matrix<Eigen::Array<double, -1, 1>, void>&)::<lambda(auto:3&&)>, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseUnaryOp<stan::math::apply_scalar_unary<stan::math::log1p_exp_fun, stan::math::arena_matrix<Eigen::Array<double, -1, 1>, void>, void>::apply(const stan::math::arena_matrix<Eigen::Array<double, -1, 1>, void>&)::<lambda(auto:3&&)>, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/lub_constrain.hpp:217:0:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/deserializer.hpp:441:0:   required from ‘auto stan::io::deserializer<T>::read_constrain_lub(const LB&, const UB&, LP&, Sizes ...) [with Ret = std::vector<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, std::allocator<Eigen::Matrix<stan::math::var_value<double>, -1, 1> > >; bool Jacobian = true; LB = int; UB = double; LP = stan::math::var_value<double>; Sizes = {int, int}; T = stan::math::var_value<double>]’
stanExports_shrinkage.h:291:0:   required from ‘stan::scalar_type_t<T2> model_shrinkage_namespace::model_shrinkage::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector<stan::math::var_value<double>, std::allocator<stan::math::var_value<double> > >; VecI = std::vector<int>; stan::require_vector_like_t<VecR>* <anonymous> = 0; stan::require_vector_like_vt<std::is_integral, VecI>* <anonymous> = 0; stan::scalar_type_t<T2> = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
stanExports_shrinkage.h:884:0:   required from ‘T_ model_shrinkage_namespace::model_shrinkage::log_prob(std::vector<T_l>&, std::vector<int>&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0:   required from ‘double stan::model::log_prob_grad(const M&, std::vector<double>&, std::vector<int>&, std::vector<double>&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_shrinkage_namespace::model_shrinkage; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::grad_log_prob(SEXP, SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:23:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseUnaryOp<stan::math::apply_scalar_unary<stan::math::log1p_exp_fun, stan::math::arena_matrix<Eigen::Array<double, -1, 1>, void>, void>::apply(const stan::math::arena_matrix<Eigen::Array<double, -1, 1>, void>&)::<lambda(auto:3&&)>, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > > > > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseUnaryOp<stan::math::apply_scalar_unary<stan::math::log1p_exp_fun, stan::math::arena_matrix<Eigen::Array<double, -1, 1>, void>, void>::apply(const stan::math::arena_matrix<Eigen::Array<double, -1, 1>, void>&)::<lambda(auto:3&&)>, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > > > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseUnaryOp<stan::math::apply_scalar_unary<stan::math::log1p_exp_fun, stan::math::arena_matrix<Eigen::Array<double, -1, 1>, void>, void>::apply(const stan::math::arena_matrix<Eigen::Array<double, -1, 1>, void>&)::<lambda(auto:3&&)>, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > > > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseUnaryOp<stan::math::apply_scalar_unary<stan::math::log1p_exp_fun, stan::math::arena_matrix<Eigen::Array<double, -1, 1>, void>, void>::apply(const stan::math::arena_matrix<Eigen::Array<double, -1, 1>, void>&)::<lambda(auto:3&&)>, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseUnaryOp<stan::math::apply_scalar_unary<stan::math::log1p_exp_fun, stan::math::arena_matrix<Eigen::Array<double, -1, 1>, void>, void>::apply(const stan::math::arena_matrix<Eigen::Array<double, -1, 1>, void>&)::<lambda(auto:3&&)>, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/lub_constrain.hpp:217:0:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/deserializer.hpp:441:0:   required from ‘auto stan::io::deserializer<T>::read_constrain_lub(const LB&, const UB&, LP&, Sizes ...) [with Ret = std::vector<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, std::allocator<Eigen::Matrix<stan::math::var_value<double>, -1, 1> > >; bool Jacobian = true; LB = int; UB = double; LP = stan::math::var_value<double>; Sizes = {int, int}; T = stan::math::var_value<double>]’
stanExports_shrinkage.h:291:0:   required from ‘stan::scalar_type_t<T2> model_shrinkage_namespace::model_shrinkage::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector<stan::math::var_value<double>, std::allocator<stan::math::var_value<double> > >; VecI = std::vector<int>; stan::require_vector_like_t<VecR>* <anonymous> = 0; stan::require_vector_like_vt<std::is_integral, VecI>* <anonymous> = 0; stan::scalar_type_t<T2> = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
stanExports_shrinkage.h:884:0:   required from ‘T_ model_shrinkage_namespace::model_shrinkage::log_prob(std::vector<T_l>&, std::vector<int>&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0:   required from ‘double stan::model::log_prob_grad(const M&, std::vector<double>&, std::vector<int>&, std::vector<double>&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_shrinkage_namespace::model_shrinkage; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::grad_log_prob(SEXP, SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:23:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<stan::math::apply_scalar_unary<stan::math::inv_logit_fun, Eigen::ArrayWrapper<Eigen::CwiseUnaryOp<stan::math::value_of<arena_matrix<Eigen::Matrix<var_value<double>, -1, 1> >&>(arena_matrix<Eigen::Matrix<var_value<double>, -1, 1> >&)::<lambda(auto:11&)>::<lambda(const auto:12&)>, const Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >, void>::apply(const Eigen::ArrayWrapper<Eigen::CwiseUnaryOp<stan::math::value_of<arena_matrix<Eigen::Matrix<var_value<double>, -1, 1> >&>(arena_matrix<Eigen::Matrix<var_value<double>, -1, 1> >&)::<lambda(auto:11&)>::<lambda(const auto:12&)>, const Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >&)::<lambda(auto:3&&)>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryOp<stan::math::value_of<arena_matrix<Eigen::Matrix<var_value<double>, -1, 1> >&>(arena_matrix<Eigen::Matrix<var_value<double>, -1, 1> >&)::<lambda(auto:11&)>::<lambda(const auto:12&)>, const Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryOp<stan::math::apply_scalar_unary<stan::math::inv_logit_fun, Eigen::ArrayWrapper<Eigen::CwiseUnaryOp<stan::math::value_of<arena_matrix<Eigen::Matrix<var_value<double>, -1, 1> >&>(arena_matrix<Eigen::Matrix<var_value<double>, -1, 1> >&)::<lambda(auto:11&)>::<lambda(const auto:12&)>, const Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >, void>::apply(const Eigen::ArrayWrapper<Eigen::CwiseUnaryOp<stan::math::value_of<arena_matrix<Eigen::Matrix<var_value<double>, -1, 1> >&>(arena_matrix<Eigen::Matrix<var_value<double>, -1, 1> >&)::<lambda(auto:11&)>::<lambda(const auto:12&)>, const Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >&)::<lambda(auto:3&&)>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryOp<stan::math::value_of<arena_matrix<Eigen::Matrix<var_value<double>, -1, 1> >&>(arena_matrix<Eigen::Matrix<var_value<double>, -1, 1> >&)::<lambda(auto:11&)>::<lambda(const auto:12&)>, const Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseUnaryOp<stan::math::apply_scalar_unary<stan::math::inv_logit_fun, Eigen::ArrayWrapper<Eigen::CwiseUnaryOp<stan::math::value_of<arena_matrix<Eigen::Matrix<var_value<double>, -1, 1> >&>(arena_matrix<Eigen::Matrix<var_value<double>, -1, 1> >&)::<lambda(auto:11&)>::<lambda(const auto:12&)>, const Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >, void>::apply(const Eigen::ArrayWrapper<Eigen::CwiseUnaryOp<stan::math::value_of<arena_matrix<Eigen::Matrix<var_value<double>, -1, 1> >&>(arena_matrix<Eigen::Matrix<var_value<double>, -1, 1> >&)::<lambda(auto:11&)>::<lambda(const auto:12&)>, const Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >&)::<lambda(auto:3&&)>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryOp<stan::math::value_of<arena_matrix<Eigen::Matrix<var_value<double>, -1, 1> >&>(arena_matrix<Eigen::Matrix<var_value<double>, -1, 1> >&)::<lambda(auto:11&)>::<lambda(const auto:12&)>, const Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl<stan::math::apply_scalar_unary<stan::math::inv_logit_fun, Eigen::ArrayWrapper<Eigen::CwiseUnaryOp<stan::math::value_of<arena_matrix<Eigen::Matrix<var_value<double>, -1, 1> >&>(arena_matrix<Eigen::Matrix<var_value<double>, -1, 1> >&)::<lambda(auto:11&)>::<lambda(const auto:12&)>, const Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >, void>::apply(const Eigen::ArrayWrapper<Eigen::CwiseUnaryOp<stan::math::value_of<arena_matrix<Eigen::Matrix<var_value<double>, -1, 1> >&>(arena_matrix<Eigen::Matrix<var_value<double>, -1, 1> >&)::<lambda(auto:11&)>::<lambda(const auto:12&)>, const Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >&)::<lambda(auto:3&&)>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryOp<stan::math::value_of<arena_matrix<Eigen::Matrix<var_value<double>, -1, 1> >&>(arena_matrix<Eigen::Matrix<var_value<double>, -1, 1> >&)::<lambda(auto:11&)>::<lambda(const auto:12&)>, const Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp<stan::math::apply_scalar_unary<stan::math::inv_logit_fun, Eigen::ArrayWrapper<Eigen::CwiseUnaryOp<stan::math::value_of<arena_matrix<Eigen::Matrix<var_value<double>, -1, 1> >&>(arena_matrix<Eigen::Matrix<var_value<double>, -1, 1> >&)::<lambda(auto:11&)>::<lambda(const auto:12&)>, const Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >, void>::apply(const Eigen::ArrayWrapper<Eigen::CwiseUnaryOp<stan::math::value_of<arena_matrix<Eigen::Matrix<var_value<double>, -1, 1> >&>(arena_matrix<Eigen::Matrix<var_value<double>, -1, 1> >&)::<lambda(auto:11&)>::<lambda(const auto:12&)>, const Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >&)::<lambda(auto:3&&)>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryOp<stan::math::value_of<arena_matrix<Eigen::Matrix<var_value<double>, -1, 1> >&>(arena_matrix<Eigen::Matrix<var_value<double>, -1, 1> >&)::<lambda(auto:11&)>::<lambda(const auto:12&)>, const Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:62:23:   required from ‘static auto stan::math::apply_scalar_unary<F, T, typename std::enable_if<stan::is_eigen<typename std::decay<_Tp2>::type>::value, void>::type>::apply(const T&) [with F = stan::math::inv_logit_fun; T = Eigen::ArrayWrapper<Eigen::CwiseUnaryOp<stan::math::value_of<arena_matrix<Eigen::Matrix<var_value<double>, -1, 1> >&>(arena_matrix<Eigen::Matrix<var_value<double>, -1, 1> >&)::<lambda(auto:11&)>::<lambda(const auto:12&)>, const Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/apply_scalar_unary.hpp:72:38:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/deserializer.hpp:441:0:   required from ‘auto stan::io::deserializer<T>::read_constrain_lub(const LB&, const UB&, LP&, Sizes ...) [with Ret = std::vector<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, std::allocator<Eigen::Matrix<stan::math::var_value<double>, -1, 1> > >; bool Jacobian = true; LB = int; UB = double; LP = stan::math::var_value<double>; Sizes = {int, int}; T = stan::math::var_value<double>]’
stanExports_shrinkage.h:291:0:   required from ‘stan::scalar_type_t<T2> model_shrinkage_namespace::model_shrinkage::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector<stan::math::var_value<double>, std::allocator<stan::math::var_value<double> > >; VecI = std::vector<int>; stan::require_vector_like_t<VecR>* <anonymous> = 0; stan::require_vector_like_vt<std::is_integral, VecI>* <anonymous> = 0; stan::scalar_type_t<T2> = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
stanExports_shrinkage.h:884:0:   required from ‘T_ model_shrinkage_namespace::model_shrinkage::log_prob(std::vector<T_l>&, std::vector<int>&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0:   required from ‘double stan::model::log_prob_grad(const M&, std::vector<double>&, std::vector<int>&, std::vector<double>&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_shrinkage_namespace::model_shrinkage; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::grad_log_prob(SEXP, SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:23:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/lub_constrain.hpp:225:0:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/deserializer.hpp:441:0:   required from ‘auto stan::io::deserializer<T>::read_constrain_lub(const LB&, const UB&, LP&, Sizes ...) [with Ret = std::vector<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, std::allocator<Eigen::Matrix<stan::math::var_value<double>, -1, 1> > >; bool Jacobian = true; LB = int; UB = double; LP = stan::math::var_value<double>; Sizes = {int, int}; T = stan::math::var_value<double>]’
stanExports_shrinkage.h:291:0:   required from ‘stan::scalar_type_t<T2> model_shrinkage_namespace::model_shrinkage::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector<stan::math::var_value<double>, std::allocator<stan::math::var_value<double> > >; VecI = std::vector<int>; stan::require_vector_like_t<VecR>* <anonymous> = 0; stan::require_vector_like_vt<std::is_integral, VecI>* <anonymous> = 0; stan::scalar_type_t<T2> = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
stanExports_shrinkage.h:884:0:   required from ‘T_ model_shrinkage_namespace::model_shrinkage::log_prob(std::vector<T_l>&, std::vector<int>&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0:   required from ‘double stan::model::log_prob_grad(const M&, std::vector<double>&, std::vector<int>&, std::vector<double>&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_shrinkage_namespace::model_shrinkage; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::grad_log_prob(SEXP, SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:23:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > > >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/lub_constrain.hpp:225:0:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/deserializer.hpp:441:0:   required from ‘auto stan::io::deserializer<T>::read_constrain_lub(const LB&, const UB&, LP&, Sizes ...) [with Ret = std::vector<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, std::allocator<Eigen::Matrix<stan::math::var_value<double>, -1, 1> > >; bool Jacobian = true; LB = int; UB = double; LP = stan::math::var_value<double>; Sizes = {int, int}; T = stan::math::var_value<double>]’
stanExports_shrinkage.h:291:0:   required from ‘stan::scalar_type_t<T2> model_shrinkage_namespace::model_shrinkage::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector<stan::math::var_value<double>, std::allocator<stan::math::var_value<double> > >; VecI = std::vector<int>; stan::require_vector_like_t<VecR>* <anonymous> = 0; stan::require_vector_like_vt<std::is_integral, VecI>* <anonymous> = 0; stan::scalar_type_t<T2> = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
stanExports_shrinkage.h:884:0:   required from ‘T_ model_shrinkage_namespace::model_shrinkage::log_prob(std::vector<T_l>&, std::vector<int>&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0:   required from ‘double stan::model::log_prob_grad(const M&, std::vector<double>&, std::vector<int>&, std::vector<double>&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_shrinkage_namespace::model_shrinkage; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::grad_log_prob(SEXP, SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:23:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > > > > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > > > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > > > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/lub_constrain.hpp:225:0:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/deserializer.hpp:441:0:   required from ‘auto stan::io::deserializer<T>::read_constrain_lub(const LB&, const UB&, LP&, Sizes ...) [with Ret = std::vector<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, std::allocator<Eigen::Matrix<stan::math::var_value<double>, -1, 1> > >; bool Jacobian = true; LB = int; UB = double; LP = stan::math::var_value<double>; Sizes = {int, int}; T = stan::math::var_value<double>]’
stanExports_shrinkage.h:291:0:   required from ‘stan::scalar_type_t<T2> model_shrinkage_namespace::model_shrinkage::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector<stan::math::var_value<double>, std::allocator<stan::math::var_value<double> > >; VecI = std::vector<int>; stan::require_vector_like_t<VecR>* <anonymous> = 0; stan::require_vector_like_vt<std::is_integral, VecI>* <anonymous> = 0; stan::scalar_type_t<T2> = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
stanExports_shrinkage.h:884:0:   required from ‘T_ model_shrinkage_namespace::model_shrinkage::log_prob(std::vector<T_l>&, std::vector<int>&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0:   required from ‘double stan::model::log_prob_grad(const M&, std::vector<double>&, std::vector<int>&, std::vector<double>&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_shrinkage_namespace::model_shrinkage; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::grad_log_prob(SEXP, SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:23:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_sum_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/ub_constrain.hpp:147:0:   required from ‘auto stan::math::ub_constrain(const T&, const U&) [with T = Eigen::Matrix<var_value<double>, -1, 1>; U = int; stan::require_matrix_t<T>* <anonymous> = 0; stan::require_stan_scalar_t<V>* <anonymous> = 0; stan::require_any_st_var<Scalar, Mat>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/lub_constrain.hpp:167:0:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/deserializer.hpp:441:0:   required from ‘auto stan::io::deserializer<T>::read_constrain_lub(const LB&, const UB&, LP&, Sizes ...) [with Ret = std::vector<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, std::allocator<Eigen::Matrix<stan::math::var_value<double>, -1, 1> > >; bool Jacobian = true; LB = int; UB = int; LP = stan::math::var_value<double>; Sizes = {int, int}; T = stan::math::var_value<double>]’
stanExports_shrinkage.h:298:0:   required from ‘stan::scalar_type_t<T2> model_shrinkage_namespace::model_shrinkage::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector<stan::math::var_value<double>, std::allocator<stan::math::var_value<double> > >; VecI = std::vector<int>; stan::require_vector_like_t<VecR>* <anonymous> = 0; stan::require_vector_like_vt<std::is_integral, VecI>* <anonymous> = 0; stan::scalar_type_t<T2> = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
stanExports_shrinkage.h:884:0:   required from ‘T_ model_shrinkage_namespace::model_shrinkage::log_prob(std::vector<T_l>&, std::vector<int>&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0:   required from ‘double stan::model::log_prob_grad(const M&, std::vector<double>&, std::vector<int>&, std::vector<double>&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_shrinkage_namespace::model_shrinkage; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::grad_log_prob(SEXP, SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:23:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryOp<stan::math::value_of<const Eigen::Matrix<var_value<double>, -1, 1>&>(const Eigen::Matrix<var_value<double>, -1, 1>&)::<lambda(auto:11&)>::<lambda(const auto:12&)>, const Eigen::Matrix<stan::math::var_value<double>, -1, 1> > > > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryOp<stan::math::value_of<const Eigen::Matrix<var_value<double>, -1, 1>&>(const Eigen::Matrix<var_value<double>, -1, 1>&)::<lambda(auto:11&)>::<lambda(const auto:12&)>, const Eigen::Matrix<stan::math::var_value<double>, -1, 1> > > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryOp<stan::math::value_of<const Eigen::Matrix<var_value<double>, -1, 1>&>(const Eigen::Matrix<var_value<double>, -1, 1>&)::<lambda(auto:11&)>::<lambda(const auto:12&)>, const Eigen::Matrix<stan::math::var_value<double>, -1, 1> > > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryOp<stan::math::value_of<const Eigen::Matrix<var_value<double>, -1, 1>&>(const Eigen::Matrix<var_value<double>, -1, 1>&)::<lambda(auto:11&)>::<lambda(const auto:12&)>, const Eigen::Matrix<stan::math::var_value<double>, -1, 1> > > >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryOp<stan::math::value_of<const Eigen::Matrix<var_value<double>, -1, 1>&>(const Eigen::Matrix<var_value<double>, -1, 1>&)::<lambda(auto:11&)>::<lambda(const auto:12&)>, const Eigen::Matrix<stan::math::var_value<double>, -1, 1> > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/ub_constrain.hpp:163:0:   required from ‘auto stan::math::ub_constrain(const T&, const U&) [with T = Eigen::Matrix<var_value<double>, -1, 1>; U = int; stan::require_matrix_t<T>* <anonymous> = 0; stan::require_stan_scalar_t<V>* <anonymous> = 0; stan::require_any_st_var<Scalar, Mat>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/lub_constrain.hpp:167:0:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/deserializer.hpp:441:0:   required from ‘auto stan::io::deserializer<T>::read_constrain_lub(const LB&, const UB&, LP&, Sizes ...) [with Ret = std::vector<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, std::allocator<Eigen::Matrix<stan::math::var_value<double>, -1, 1> > >; bool Jacobian = true; LB = int; UB = int; LP = stan::math::var_value<double>; Sizes = {int, int}; T = stan::math::var_value<double>]’
stanExports_shrinkage.h:298:0:   required from ‘stan::scalar_type_t<T2> model_shrinkage_namespace::model_shrinkage::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector<stan::math::var_value<double>, std::allocator<stan::math::var_value<double> > >; VecI = std::vector<int>; stan::require_vector_like_t<VecR>* <anonymous> = 0; stan::require_vector_like_vt<std::is_integral, VecI>* <anonymous> = 0; stan::scalar_type_t<T2> = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
stanExports_shrinkage.h:884:0:   required from ‘T_ model_shrinkage_namespace::model_shrinkage::log_prob(std::vector<T_l>&, std::vector<int>&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0:   required from ‘double stan::model::log_prob_grad(const M&, std::vector<double>&, std::vector<int>&, std::vector<double>&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_shrinkage_namespace::model_shrinkage; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::grad_log_prob(SEXP, SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:23:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/lub_constrain.hpp:173:0:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/deserializer.hpp:441:0:   required from ‘auto stan::io::deserializer<T>::read_constrain_lub(const LB&, const UB&, LP&, Sizes ...) [with Ret = std::vector<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, std::allocator<Eigen::Matrix<stan::math::var_value<double>, -1, 1> > >; bool Jacobian = true; LB = int; UB = int; LP = stan::math::var_value<double>; Sizes = {int, int}; T = stan::math::var_value<double>]’
stanExports_shrinkage.h:298:0:   required from ‘stan::scalar_type_t<T2> model_shrinkage_namespace::model_shrinkage::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector<stan::math::var_value<double>, std::allocator<stan::math::var_value<double> > >; VecI = std::vector<int>; stan::require_vector_like_t<VecR>* <anonymous> = 0; stan::require_vector_like_vt<std::is_integral, VecI>* <anonymous> = 0; stan::scalar_type_t<T2> = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
stanExports_shrinkage.h:884:0:   required from ‘T_ model_shrinkage_namespace::model_shrinkage::log_prob(std::vector<T_l>&, std::vector<int>&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0:   required from ‘double stan::model::log_prob_grad(const M&, std::vector<double>&, std::vector<int>&, std::vector<double>&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_shrinkage_namespace::model_shrinkage; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::grad_log_prob(SEXP, SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:23:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, int>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, int>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, int>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_sum_op<double, int>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, int>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/lub_constrain.hpp:173:0:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/deserializer.hpp:441:0:   required from ‘auto stan::io::deserializer<T>::read_constrain_lub(const LB&, const UB&, LP&, Sizes ...) [with Ret = std::vector<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, std::allocator<Eigen::Matrix<stan::math::var_value<double>, -1, 1> > >; bool Jacobian = true; LB = int; UB = int; LP = stan::math::var_value<double>; Sizes = {int, int}; T = stan::math::var_value<double>]’
stanExports_shrinkage.h:298:0:   required from ‘stan::scalar_type_t<T2> model_shrinkage_namespace::model_shrinkage::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector<stan::math::var_value<double>, std::allocator<stan::math::var_value<double> > >; VecI = std::vector<int>; stan::require_vector_like_t<VecR>* <anonymous> = 0; stan::require_vector_like_vt<std::is_integral, VecI>* <anonymous> = 0; stan::scalar_type_t<T2> = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
stanExports_shrinkage.h:884:0:   required from ‘T_ model_shrinkage_namespace::model_shrinkage::log_prob(std::vector<T_l>&, std::vector<int>&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0:   required from ‘double stan::model::log_prob_grad(const M&, std::vector<double>&, std::vector<int>&, std::vector<double>&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_shrinkage_namespace::model_shrinkage; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::grad_log_prob(SEXP, SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:23:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, int>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, int>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, int>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, int>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, int>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/lub_constrain.hpp:178:0:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/deserializer.hpp:441:0:   required from ‘auto stan::io::deserializer<T>::read_constrain_lub(const LB&, const UB&, LP&, Sizes ...) [with Ret = std::vector<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, std::allocator<Eigen::Matrix<stan::math::var_value<double>, -1, 1> > >; bool Jacobian = true; LB = int; UB = int; LP = stan::math::var_value<double>; Sizes = {int, int}; T = stan::math::var_value<double>]’
stanExports_shrinkage.h:298:0:   required from ‘stan::scalar_type_t<T2> model_shrinkage_namespace::model_shrinkage::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector<stan::math::var_value<double>, std::allocator<stan::math::var_value<double> > >; VecI = std::vector<int>; stan::require_vector_like_t<VecR>* <anonymous> = 0; stan::require_vector_like_vt<std::is_integral, VecI>* <anonymous> = 0; stan::scalar_type_t<T2> = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
stanExports_shrinkage.h:884:0:   required from ‘T_ model_shrinkage_namespace::model_shrinkage::log_prob(std::vector<T_l>&, std::vector<int>&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0:   required from ‘double stan::model::log_prob_grad(const M&, std::vector<double>&, std::vector<int>&, std::vector<double>&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_shrinkage_namespace::model_shrinkage; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::grad_log_prob(SEXP, SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:23:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, int>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, int>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, int>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, int>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, int>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/lub_constrain.hpp:178:0:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/deserializer.hpp:441:0:   required from ‘auto stan::io::deserializer<T>::read_constrain_lub(const LB&, const UB&, LP&, Sizes ...) [with Ret = std::vector<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, std::allocator<Eigen::Matrix<stan::math::var_value<double>, -1, 1> > >; bool Jacobian = true; LB = int; UB = int; LP = stan::math::var_value<double>; Sizes = {int, int}; T = stan::math::var_value<double>]’
stanExports_shrinkage.h:298:0:   required from ‘stan::scalar_type_t<T2> model_shrinkage_namespace::model_shrinkage::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector<stan::math::var_value<double>, std::allocator<stan::math::var_value<double> > >; VecI = std::vector<int>; stan::require_vector_like_t<VecR>* <anonymous> = 0; stan::require_vector_like_vt<std::is_integral, VecI>* <anonymous> = 0; stan::scalar_type_t<T2> = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
stanExports_shrinkage.h:884:0:   required from ‘T_ model_shrinkage_namespace::model_shrinkage::log_prob(std::vector<T_l>&, std::vector<int>&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0:   required from ‘double stan::model::log_prob_grad(const M&, std::vector<double>&, std::vector<int>&, std::vector<double>&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_shrinkage_namespace::model_shrinkage; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::grad_log_prob(SEXP, SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:23:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, int>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, int>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, int>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, int>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, int>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/lub_constrain.hpp:178:0:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/deserializer.hpp:441:0:   required from ‘auto stan::io::deserializer<T>::read_constrain_lub(const LB&, const UB&, LP&, Sizes ...) [with Ret = std::vector<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, std::allocator<Eigen::Matrix<stan::math::var_value<double>, -1, 1> > >; bool Jacobian = true; LB = int; UB = int; LP = stan::math::var_value<double>; Sizes = {int, int}; T = stan::math::var_value<double>]’
stanExports_shrinkage.h:298:0:   required from ‘stan::scalar_type_t<T2> model_shrinkage_namespace::model_shrinkage::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector<stan::math::var_value<double>, std::allocator<stan::math::var_value<double> > >; VecI = std::vector<int>; stan::require_vector_like_t<VecR>* <anonymous> = 0; stan::require_vector_like_vt<std::is_integral, VecI>* <anonymous> = 0; stan::scalar_type_t<T2> = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
stanExports_shrinkage.h:884:0:   required from ‘T_ model_shrinkage_namespace::model_shrinkage::log_prob(std::vector<T_l>&, std::vector<int>&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0:   required from ‘double stan::model::log_prob_grad(const M&, std::vector<double>&, std::vector<int>&, std::vector<double>&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_shrinkage_namespace::model_shrinkage; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::grad_log_prob(SEXP, SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:23:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<int, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/ub_constrain.hpp:215:0:   required from ‘auto stan::math::ub_constrain(const T&, const U&, stan::return_type_t<T1, T2>&) [with T = Eigen::Matrix<var_value<double>, -1, 1>; U = int; stan::require_matrix_t<T>* <anonymous> = 0; stan::require_stan_scalar_t<V>* <anonymous> = 0; stan::require_any_st_var<Scalar, Mat>* <anonymous> = 0; stan::return_type_t<T1, T2> = var_value<double>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/lub_constrain.hpp:211:0:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/deserializer.hpp:441:0:   required from ‘auto stan::io::deserializer<T>::read_constrain_lub(const LB&, const UB&, LP&, Sizes ...) [with Ret = std::vector<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, std::allocator<Eigen::Matrix<stan::math::var_value<double>, -1, 1> > >; bool Jacobian = true; LB = int; UB = int; LP = stan::math::var_value<double>; Sizes = {int, int}; T = stan::math::var_value<double>]’
stanExports_shrinkage.h:298:0:   required from ‘stan::scalar_type_t<T2> model_shrinkage_namespace::model_shrinkage::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector<stan::math::var_value<double>, std::allocator<stan::math::var_value<double> > >; VecI = std::vector<int>; stan::require_vector_like_t<VecR>* <anonymous> = 0; stan::require_vector_like_vt<std::is_integral, VecI>* <anonymous> = 0; stan::scalar_type_t<T2> = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
stanExports_shrinkage.h:884:0:   required from ‘T_ model_shrinkage_namespace::model_shrinkage::log_prob(std::vector<T_l>&, std::vector<int>&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0:   required from ‘double stan::model::log_prob_grad(const M&, std::vector<double>&, std::vector<int>&, std::vector<double>&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_shrinkage_namespace::model_shrinkage; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::grad_log_prob(SEXP, SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:23:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, int>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > > > > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, int>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > > > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, int>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > > > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, int>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, int>, const Eigen::ArrayWrapper<Eigen::CwiseUnaryView<Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<int>, const Eigen::Array<int, -1, 1> > >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > > >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Map<Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> > > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/lub_constrain.hpp:225:0:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/deserializer.hpp:441:0:   required from ‘auto stan::io::deserializer<T>::read_constrain_lub(const LB&, const UB&, LP&, Sizes ...) [with Ret = std::vector<Eigen::Matrix<stan::math::var_value<double>, -1, 1>, std::allocator<Eigen::Matrix<stan::math::var_value<double>, -1, 1> > >; bool Jacobian = true; LB = int; UB = int; LP = stan::math::var_value<double>; Sizes = {int, int}; T = stan::math::var_value<double>]’
stanExports_shrinkage.h:298:0:   required from ‘stan::scalar_type_t<T2> model_shrinkage_namespace::model_shrinkage::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector<stan::math::var_value<double>, std::allocator<stan::math::var_value<double> > >; VecI = std::vector<int>; stan::require_vector_like_t<VecR>* <anonymous> = 0; stan::require_vector_like_vt<std::is_integral, VecI>* <anonymous> = 0; stan::scalar_type_t<T2> = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
stanExports_shrinkage.h:884:0:   required from ‘T_ model_shrinkage_namespace::model_shrinkage::log_prob(std::vector<T_l>&, std::vector<int>&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0:   required from ‘double stan::model::log_prob_grad(const M&, std::vector<double>&, std::vector<int>&, std::vector<double>&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_shrinkage_namespace::model_shrinkage; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::grad_log_prob(SEXP, SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:23:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp: In instantiation of ‘void stan::math::elementwise_check(const F&, const char*, const char*, const T&, const char*, const Indexings& ...) [with F = check_finite<Eigen::Matrix<double, 2, 1> >(const char*, const char*, const Eigen::Matrix<double, 2, 1>&)::<lambda(double)>; T = Eigen::Matrix<double, 2, 1>; Indexings = {}; stan::require_eigen_t<T>* <anonymous> = 0; std::enable_if_t<((Eigen::internal::traits<_Rhs>::Flags & Eigen::LinearAccessBit) || T::IsVectorAtCompileTime)>* <anonymous> = 0]’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_finite.hpp:29:20:   required from ‘void stan::math::check_finite(const char*, const char*, const T_y&) [with T_y = Eigen::Matrix<double, 2, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_pFq.hpp:35:15:   required from ‘stan::return_type_t<T_x, T_sigma, T_l> stan::math::hypergeometric_pFq(const Ta&, const Tb&, const Tz&) [with Ta = Eigen::Matrix<double, 2, 1>; Tb = Eigen::Matrix<double, 1, 1, 0, 1, 1>; Tz = double; stan::require_all_eigen_st<std::is_arithmetic, Ta, Tb>* <anonymous> = 0; stan::require_arithmetic_t<Tz>* <anonymous> = 0; stan::return_type_t<T_x, T_sigma, T_l> = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_2F1.hpp:189:30:   required from ‘stan::return_type_t<Ta1, Ta1, Tb, Tz> stan::math::hypergeometric_2F1(const Ta1&, const Ta2&, const Tb&, const Tz&) [with Ta1 = double; Ta2 = double; Tb = double; Tz = double; ScalarT = double; OptT = boost::optional<double>; stan::require_all_arithmetic_t<Ta1, Ta2, Tb, Tz>* <anonymous> = 0; stan::return_type_t<Ta1, Ta1, Tb, Tz> = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:190:39:   required from ‘TupleT stan::math::internal::grad_2F1_impl(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool calc_a1 = true; bool calc_a2 = true; bool calc_b1 = true; bool calc_z = true; T1 = double; T2 = double; T3 = double; T_z = double; ScalarT = double; TupleT = std::tuple<double, double, double, double>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:306:57:   required from ‘auto stan::math::grad_2F1(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool ReturnSameT = true; T1 = double; T2 = double; T3 = double; T_z = double; stan::require_t<std::integral_constant<bool, __v> >* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/grad_inc_beta.hpp:37:25:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:153:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase<Eigen::Matrix<double, 2, 1> >::Index’ {aka ‘long int’} [-Wsign-compare]
  153 |   for (size_t i = 0; i < x.size(); i++) {
      |                      ~~^~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp: In instantiation of ‘void stan::math::elementwise_check(const F&, const char*, const char*, const T&, const char*, const Indexings& ...) [with F = check_finite<Eigen::Matrix<double, 1, 1, 0, 1, 1> >(const char*, const char*, const Eigen::Matrix<double, 1, 1, 0, 1, 1>&)::<lambda(double)>; T = Eigen::Matrix<double, 1, 1, 0, 1, 1>; Indexings = {}; stan::require_eigen_t<T>* <anonymous> = 0; std::enable_if_t<((Eigen::internal::traits<_Rhs>::Flags & Eigen::LinearAccessBit) || T::IsVectorAtCompileTime)>* <anonymous> = 0]’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_finite.hpp:29:20:   required from ‘void stan::math::check_finite(const char*, const char*, const T_y&) [with T_y = Eigen::Matrix<double, 1, 1, 0, 1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_pFq.hpp:36:15:   required from ‘stan::return_type_t<T_x, T_sigma, T_l> stan::math::hypergeometric_pFq(const Ta&, const Tb&, const Tz&) [with Ta = Eigen::Matrix<double, 2, 1>; Tb = Eigen::Matrix<double, 1, 1, 0, 1, 1>; Tz = double; stan::require_all_eigen_st<std::is_arithmetic, Ta, Tb>* <anonymous> = 0; stan::require_arithmetic_t<Tz>* <anonymous> = 0; stan::return_type_t<T_x, T_sigma, T_l> = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_2F1.hpp:189:30:   required from ‘stan::return_type_t<Ta1, Ta1, Tb, Tz> stan::math::hypergeometric_2F1(const Ta1&, const Ta2&, const Tb&, const Tz&) [with Ta1 = double; Ta2 = double; Tb = double; Tz = double; ScalarT = double; OptT = boost::optional<double>; stan::require_all_arithmetic_t<Ta1, Ta2, Tb, Tz>* <anonymous> = 0; stan::return_type_t<Ta1, Ta1, Tb, Tz> = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:190:39:   required from ‘TupleT stan::math::internal::grad_2F1_impl(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool calc_a1 = true; bool calc_a2 = true; bool calc_b1 = true; bool calc_z = true; T1 = double; T2 = double; T3 = double; T_z = double; ScalarT = double; TupleT = std::tuple<double, double, double, double>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:306:57:   required from ‘auto stan::math::grad_2F1(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool ReturnSameT = true; T1 = double; T2 = double; T3 = double; T_z = double; stan::require_t<std::integral_constant<bool, __v> >* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/grad_inc_beta.hpp:37:25:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:153:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase<Eigen::Matrix<double, 1, 1, 0, 1, 1> >::Index’ {aka ‘long int’} [-Wsign-compare]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp: In instantiation of ‘void stan::math::elementwise_check(const F&, const char*, const char*, const T&, const char*, const Indexings& ...) [with F = check_not_nan<Eigen::Matrix<double, 2, 1> >(const char*, const char*, const Eigen::Matrix<double, 2, 1>&)::<lambda(double)>; T = Eigen::Matrix<double, 2, 1>; Indexings = {}; stan::require_eigen_t<T>* <anonymous> = 0; std::enable_if_t<((Eigen::internal::traits<_Rhs>::Flags & Eigen::LinearAccessBit) || T::IsVectorAtCompileTime)>* <anonymous> = 0]’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_not_nan.hpp:28:20:   required from ‘void stan::math::check_not_nan(const char*, const char*, const T_y&) [with T_y = Eigen::Matrix<double, 2, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_pFq.hpp:39:16:   required from ‘stan::return_type_t<T_x, T_sigma, T_l> stan::math::hypergeometric_pFq(const Ta&, const Tb&, const Tz&) [with Ta = Eigen::Matrix<double, 2, 1>; Tb = Eigen::Matrix<double, 1, 1, 0, 1, 1>; Tz = double; stan::require_all_eigen_st<std::is_arithmetic, Ta, Tb>* <anonymous> = 0; stan::require_arithmetic_t<Tz>* <anonymous> = 0; stan::return_type_t<T_x, T_sigma, T_l> = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_2F1.hpp:189:30:   required from ‘stan::return_type_t<Ta1, Ta1, Tb, Tz> stan::math::hypergeometric_2F1(const Ta1&, const Ta2&, const Tb&, const Tz&) [with Ta1 = double; Ta2 = double; Tb = double; Tz = double; ScalarT = double; OptT = boost::optional<double>; stan::require_all_arithmetic_t<Ta1, Ta2, Tb, Tz>* <anonymous> = 0; stan::return_type_t<Ta1, Ta1, Tb, Tz> = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:190:39:   required from ‘TupleT stan::math::internal::grad_2F1_impl(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool calc_a1 = true; bool calc_a2 = true; bool calc_b1 = true; bool calc_z = true; T1 = double; T2 = double; T3 = double; T_z = double; ScalarT = double; TupleT = std::tuple<double, double, double, double>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:306:57:   required from ‘auto stan::math::grad_2F1(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool ReturnSameT = true; T1 = double; T2 = double; T3 = double; T_z = double; stan::require_t<std::integral_constant<bool, __v> >* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/grad_inc_beta.hpp:37:25:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:153:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase<Eigen::Matrix<double, 2, 1> >::Index’ {aka ‘long int’} [-Wsign-compare]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp: In instantiation of ‘void stan::math::elementwise_check(const F&, const char*, const char*, const T&, const char*, const Indexings& ...) [with F = check_not_nan<Eigen::Matrix<double, 1, 1, 0, 1, 1> >(const char*, const char*, const Eigen::Matrix<double, 1, 1, 0, 1, 1>&)::<lambda(double)>; T = Eigen::Matrix<double, 1, 1, 0, 1, 1>; Indexings = {}; stan::require_eigen_t<T>* <anonymous> = 0; std::enable_if_t<((Eigen::internal::traits<_Rhs>::Flags & Eigen::LinearAccessBit) || T::IsVectorAtCompileTime)>* <anonymous> = 0]’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_not_nan.hpp:28:20:   required from ‘void stan::math::check_not_nan(const char*, const char*, const T_y&) [with T_y = Eigen::Matrix<double, 1, 1, 0, 1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_pFq.hpp:40:16:   required from ‘stan::return_type_t<T_x, T_sigma, T_l> stan::math::hypergeometric_pFq(const Ta&, const Tb&, const Tz&) [with Ta = Eigen::Matrix<double, 2, 1>; Tb = Eigen::Matrix<double, 1, 1, 0, 1, 1>; Tz = double; stan::require_all_eigen_st<std::is_arithmetic, Ta, Tb>* <anonymous> = 0; stan::require_arithmetic_t<Tz>* <anonymous> = 0; stan::return_type_t<T_x, T_sigma, T_l> = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_2F1.hpp:189:30:   required from ‘stan::return_type_t<Ta1, Ta1, Tb, Tz> stan::math::hypergeometric_2F1(const Ta1&, const Ta2&, const Tb&, const Tz&) [with Ta1 = double; Ta2 = double; Tb = double; Tz = double; ScalarT = double; OptT = boost::optional<double>; stan::require_all_arithmetic_t<Ta1, Ta2, Tb, Tz>* <anonymous> = 0; stan::return_type_t<Ta1, Ta1, Tb, Tz> = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:190:39:   required from ‘TupleT stan::math::internal::grad_2F1_impl(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool calc_a1 = true; bool calc_a2 = true; bool calc_b1 = true; bool calc_z = true; T1 = double; T2 = double; T3 = double; T_z = double; ScalarT = double; TupleT = std::tuple<double, double, double, double>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:306:57:   required from ‘auto stan::math::grad_2F1(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool ReturnSameT = true; T1 = double; T2 = double; T3 = double; T_z = double; stan::require_t<std::integral_constant<bool, __v> >* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/grad_inc_beta.hpp:37:25:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:153:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase<Eigen::Matrix<double, 1, 1, 0, 1, 1> >::Index’ {aka ‘long int’} [-Wsign-compare]
In file included from /home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/math/special_functions/beta.hpp:1721,
                 from /home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/math/special_functions/binomial.hpp:15,
                 from /home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/choose.hpp:7,
                 from /home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun.hpp:46:
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp: In instantiation of ‘boost::math::detail::temme_root_finder<T>::temme_root_finder(T, T) [with T = double]’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:304:7:   required from ‘T boost::math::detail::temme_method_2_ibeta_inverse(T, T, T, T, T, const Policy&) [with T = double; Policy = boost::math::policies::policy<boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_float<false>, boost::math::policies::promote_double<false>, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:615:48:   required from ‘T boost::math::detail::ibeta_inv_imp(T, T, T, T, const Policy&, T*) [with T = double; Policy = boost::math::policies::policy<boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_float<false>, boost::math::policies::promote_double<false>, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:992:30:   required from ‘boost::math::tools::promote_args_t<T1, T2, T3, T4> boost::math::ibeta_inv(T1, T2, T3, T4*, const Policy&) [with T1 = double; T2 = double; T3 = double; T4 = double; Policy = policies::policy<policies::overflow_error<boost::math::policies::errno_on_error>, policies::pole_error<boost::math::policies::errno_on_error>, policies::promote_double<false>, policies::digits2<0>, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy>; tools::promote_args_t<T1, T2, T3, T4> = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:1023:20:   required from ‘boost::math::tools::promote_args_t<RT1, RT2, A> boost::math::ibeta_inv(RT1, RT2, RT3, const Policy&) [with RT1 = double; RT2 = double; RT3 = double; Policy = policies::policy<policies::overflow_error<boost::math::policies::errno_on_error>, policies::pole_error<boost::math::policies::errno_on_error>, policies::promote_double<false>, policies::digits2<0>, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy>; tools::promote_args_t<RT1, RT2, A> = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/inv_inc_beta.hpp:32:32:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:29:15: warning: unused variable ‘x_extrema’ [-Wunused-variable]
   29 |       const T x_extrema = 1 / (1 + a);
      |               ^~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase<Derived>&) [with Derived = Eigen::PartialReduxExpr<const Eigen::CwiseUnaryOp<scalar_abs_op<double>, const Eigen::Matrix<double, -1, -1> >, member_sum<double, double>, 1>; Eigen::Index = long int]’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63:   required from ‘static Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::Scalar Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::PartialReduxExpr<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Matrix<double, -1, -1> >, Eigen::internal::member_sum<double, double>, 1>; Func = Eigen::internal::scalar_max_op<double, double, 0>; Evaluator = Eigen::internal::redux_evaluator<Eigen::PartialReduxExpr<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Matrix<double, -1, -1> >, Eigen::internal::member_sum<double, double>, 1> >; Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56:   required from ‘typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_max_op<double, double, 0>; Derived = Eigen::PartialReduxExpr<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Matrix<double, -1, -1> >, Eigen::internal::member_sum<double, double>, 1>; typename Eigen::internal::traits<T>::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:448:25:   required from ‘typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::maxCoeff() const [with int NaNPropagation = 0; Derived = Eigen::PartialReduxExpr<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Matrix<double, -1, -1> >, Eigen::internal::member_sum<double, double>, 1>; typename Eigen::internal::traits<T>::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:466:37:   required from ‘typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::maxCoeff() const [with Derived = Eigen::PartialReduxExpr<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Matrix<double, -1, -1> >, Eigen::internal::member_sum<double, double>, 1>; typename Eigen::internal::traits<T>::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/matrix_exp_action_handler.hpp:106:49:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
  654 |   return internal::first_aligned<int(unpacket_traits<DefaultPacketType>::alignment),Derived>(m);
      |                                                                          ^~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Matrix<double, -1, -1> >, 2, -1, true>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Block<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Matrix<double, -1, -1> >, 2, -1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Block<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Matrix<double, -1, -1> >, 2, -1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:172:103:   required from ‘class Eigen::internal::BlockImpl_dense<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Matrix<double, -1, -1> >, 2, -1, true, false>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   required from ‘class Eigen::BlockImpl<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Matrix<double, -1, -1> >, 2, -1, true, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81:   required from ‘class Eigen::Block<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Matrix<double, -1, -1> >, 2, -1, true>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PartialReduxEvaluator.h:203:15:   required from ‘PacketType Eigen::internal::evaluator<Eigen::PartialReduxExpr<MatrixType, MemberOp, Direction> >::packet(Eigen::Index) const [with int LoadMode = 0; PacketType = __vector(2) double; ArgType = const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Matrix<double, -1, -1> >; MemberOp = Eigen::internal::member_sum<double, double>; int Direction = 1; Eigen::Index = long int]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:251:78:   required from ‘static Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::Scalar Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::PartialReduxExpr<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Matrix<double, -1, -1> >, Eigen::internal::member_sum<double, double>, 1>; Func = Eigen::internal::scalar_max_op<double, double, 0>; Evaluator = Eigen::internal::redux_evaluator<Eigen::PartialReduxExpr<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Matrix<double, -1, -1> >, Eigen::internal::member_sum<double, double>, 1> >; Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56:   required from ‘typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_max_op<double, double, 0>; Derived = Eigen::PartialReduxExpr<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Matrix<double, -1, -1> >, Eigen::internal::member_sum<double, double>, 1>; typename Eigen::internal::traits<T>::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:448:25:   required from ‘typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::maxCoeff() const [with int NaNPropagation = 0; Derived = Eigen::PartialReduxExpr<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Matrix<double, -1, -1> >, Eigen::internal::member_sum<double, double>, 1>; typename Eigen::internal::traits<T>::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:466:37:   required from ‘typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::maxCoeff() const [with Derived = Eigen::PartialReduxExpr<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Matrix<double, -1, -1> >, Eigen::internal::member_sum<double, double>, 1>; typename Eigen::internal::traits<T>::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/matrix_exp_action_handler.hpp:106:49:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   56 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
In file included from /home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/Core:277:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator<Eigen::Block<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Matrix<double, -1, -1> >, 2, -1, true> >’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7:   required from ‘class Eigen::internal::redux_evaluator<Eigen::Block<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Matrix<double, -1, -1> >, 2, -1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PartialReduxEvaluator.h:217:20:   required from ‘PacketType Eigen::internal::evaluator<Eigen::PartialReduxExpr<MatrixType, MemberOp, Direction> >::packet(Eigen::Index) const [with int LoadMode = 0; PacketType = __vector(2) double; ArgType = const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Matrix<double, -1, -1> >; MemberOp = Eigen::internal::member_sum<double, double>; int Direction = 1; Eigen::Index = long int]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:251:78:   required from ‘static Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::Scalar Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::PartialReduxExpr<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Matrix<double, -1, -1> >, Eigen::internal::member_sum<double, double>, 1>; Func = Eigen::internal::scalar_max_op<double, double, 0>; Evaluator = Eigen::internal::redux_evaluator<Eigen::PartialReduxExpr<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Matrix<double, -1, -1> >, Eigen::internal::member_sum<double, double>, 1> >; Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56:   required from ‘typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_max_op<double, double, 0>; Derived = Eigen::PartialReduxExpr<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Matrix<double, -1, -1> >, Eigen::internal::member_sum<double, double>, 1>; typename Eigen::internal::traits<T>::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:448:25:   required from ‘typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::maxCoeff() const [with int NaNPropagation = 0; Derived = Eigen::PartialReduxExpr<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Matrix<double, -1, -1> >, Eigen::internal::member_sum<double, double>, 1>; typename Eigen::internal::traits<T>::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:466:37:   required from ‘typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::maxCoeff() const [with Derived = Eigen::PartialReduxExpr<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Matrix<double, -1, -1> >, Eigen::internal::member_sum<double, double>, 1>; typename Eigen::internal::traits<T>::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/matrix_exp_action_handler.hpp:106:49:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
 1071 |     PacketAlignment = unpacket_traits<PacketScalar>::alignment,
      |                                                      ^~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Matrix<double, -1, -1> >, 1, -1, false>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Block<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Matrix<double, -1, -1> >, 1, -1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Block<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Matrix<double, -1, -1> >, 1, -1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:172:103:   required from ‘class Eigen::internal::BlockImpl_dense<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Matrix<double, -1, -1> >, 1, -1, false, false>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   required from ‘class Eigen::BlockImpl<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Matrix<double, -1, -1> >, 1, -1, false, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81:   required from ‘class Eigen::Block<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Matrix<double, -1, -1> >, 1, -1, false>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PartialReduxEvaluator.h:183:72:   required from ‘const Eigen::internal::evaluator<Eigen::PartialReduxExpr<MatrixType, MemberOp, Direction> >::Scalar Eigen::internal::evaluator<Eigen::PartialReduxExpr<MatrixType, MemberOp, Direction> >::coeff(Eigen::Index) const [with ArgType = const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Matrix<double, -1, -1> >; MemberOp = Eigen::internal::member_sum<double, double>; int Direction = 1; Scalar = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:268:34:   required from ‘static Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::Scalar Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::PartialReduxExpr<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Matrix<double, -1, -1> >, Eigen::internal::member_sum<double, double>, 1>; Func = Eigen::internal::scalar_max_op<double, double, 0>; Evaluator = Eigen::internal::redux_evaluator<Eigen::PartialReduxExpr<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Matrix<double, -1, -1> >, Eigen::internal::member_sum<double, double>, 1> >; Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56:   required from ‘typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_max_op<double, double, 0>; Derived = Eigen::PartialReduxExpr<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Matrix<double, -1, -1> >, Eigen::internal::member_sum<double, double>, 1>; typename Eigen::internal::traits<T>::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:448:25:   required from ‘typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::maxCoeff() const [with int NaNPropagation = 0; Derived = Eigen::PartialReduxExpr<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Matrix<double, -1, -1> >, Eigen::internal::member_sum<double, double>, 1>; typename Eigen::internal::traits<T>::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:466:37:   required from ‘typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::maxCoeff() const [with Derived = Eigen::PartialReduxExpr<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Matrix<double, -1, -1> >, Eigen::internal::member_sum<double, double>, 1>; typename Eigen::internal::traits<T>::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/matrix_exp_action_handler.hpp:106:49:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   56 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h: In instantiation of ‘void Eigen::internal::gemm_pack_rhs<Scalar, Index, DataMapper, nr, 0, Conjugate, PanelMode>::operator()(Scalar*, const DataMapper&, Index, Index, Index, Index) [with Scalar = double; Index = long int; DataMapper = Eigen::internal::const_blas_data_mapper<double, long int, 0>; int nr = 4; bool Conjugate = false; bool PanelMode = false]’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h:100:15:   required from ‘static void Eigen::internal::general_matrix_matrix_triangular_product<Index, LhsScalar, LhsStorageOrder, ConjugateLhs, RhsScalar, RhsStorageOrder, ConjugateRhs, 0, ResInnerStride, UpLo, Version>::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, Index, const ResScalar&, Eigen::internal::level3_blocking<LhsScalar, RhsScalar>&) [with Index = long int; LhsScalar = double; int LhsStorageOrder = 1; bool ConjugateLhs = false; RhsScalar = double; int RhsStorageOrder = 0; bool ConjugateRhs = false; int ResInnerStride = 1; int UpLo = 2; int Version = 0; ResScalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointProduct.h:113:12:   required from ‘static void Eigen::selfadjoint_product_selector<MatrixType, OtherType, UpLo, false>::run(MatrixType&, const OtherType&, const typename MatrixType::Scalar&) [with MatrixType = Eigen::Matrix<double, -1, -1>; OtherType = Eigen::Matrix<double, -1, -1, 1, -1, -1>; int UpLo = 2; typename MatrixType::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointProduct.h:126:62:   required from ‘Eigen::SelfAdjointView<MatrixType, UpLo>& Eigen::SelfAdjointView<MatrixType, Mode>::rankUpdate(const Eigen::MatrixBase<OtherDerived>&, const Scalar&) [with DerivedU = Eigen::Matrix<double, -1, -1, 1, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>; unsigned int UpLo = 2; Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:33:78:   required from ‘Eigen::Matrix<typename stan::value_type<T>::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0> >; stan::require_eigen_vt<std::is_arithmetic, T>* <anonymous> = 0; typename stan::value_type<T>::type = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20:   required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0>; stan::require_eigen_t<T_desired>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2459:62: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
 2459 |           PacketBlock<Packet,(PacketSize%4)==0?4:PacketSize> kernel;
      |                                                              ^~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h: In instantiation of ‘void Eigen::internal::gemm_pack_lhs<Scalar, Index, DataMapper, Pack1, Pack2, Packet, 1, Conjugate, PanelMode>::operator()(Scalar*, const DataMapper&, Index, Index, Index, Index) [with Scalar = double; Index = long int; DataMapper = Eigen::internal::const_blas_data_mapper<double, long int, 1>; int Pack1 = 4; int Pack2 = 2; Packet = __vector(2) double; bool Conjugate = false; bool PanelMode = false]’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h:106:17:   required from ‘static void Eigen::internal::general_matrix_matrix_triangular_product<Index, LhsScalar, LhsStorageOrder, ConjugateLhs, RhsScalar, RhsStorageOrder, ConjugateRhs, 0, ResInnerStride, UpLo, Version>::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, Index, const ResScalar&, Eigen::internal::level3_blocking<LhsScalar, RhsScalar>&) [with Index = long int; LhsScalar = double; int LhsStorageOrder = 1; bool ConjugateLhs = false; RhsScalar = double; int RhsStorageOrder = 0; bool ConjugateRhs = false; int ResInnerStride = 1; int UpLo = 2; int Version = 0; ResScalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointProduct.h:113:12:   required from ‘static void Eigen::selfadjoint_product_selector<MatrixType, OtherType, UpLo, false>::run(MatrixType&, const OtherType&, const typename MatrixType::Scalar&) [with MatrixType = Eigen::Matrix<double, -1, -1>; OtherType = Eigen::Matrix<double, -1, -1, 1, -1, -1>; int UpLo = 2; typename MatrixType::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointProduct.h:126:62:   required from ‘Eigen::SelfAdjointView<MatrixType, UpLo>& Eigen::SelfAdjointView<MatrixType, Mode>::rankUpdate(const Eigen::MatrixBase<OtherDerived>&, const Scalar&) [with DerivedU = Eigen::Matrix<double, -1, -1, 1, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>; unsigned int UpLo = 2; Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:33:78:   required from ‘Eigen::Matrix<typename stan::value_type<T>::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0> >; stan::require_eigen_vt<std::is_arithmetic, T>* <anonymous> = 0; typename stan::value_type<T>::type = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20:   required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0>; stan::require_eigen_t<T_desired>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2256:82: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
 2256 |   typedef typename unpacket_traits<typename unpacket_traits<Packet>::half>::half QuarterPacket;
      |                                                                                  ^~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2258:56: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
 2258 |          HalfPacketSize = unpacket_traits<HalfPacket>::size,
      |                                                        ^~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2259:62: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
 2259 |          QuarterPacketSize = unpacket_traits<QuarterPacket>::size,
      |                                                              ^~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2259:62: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2298:39: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
 2298 |               PacketBlock<HalfPacket> kernel_half;
      |                                       ^~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2298:39: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2304:42: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
 2304 |               PacketBlock<QuarterPacket> kernel_quarter;
      |                                          ^~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2304:42: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2304:42: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2304:42: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h: In instantiation of ‘void Eigen::internal::gebp_kernel<LhsScalar, RhsScalar, Index, DataMapper, mr, nr, ConjugateLhs, ConjugateRhs>::operator()(const DataMapper&, const LhsScalar*, const RhsScalar*, Index, Index, Index, ResScalar, Index, Index, Index, Index) [with LhsScalar = double; RhsScalar = double; Index = long int; DataMapper = Eigen::internal::blas_data_mapper<double, long int, 0, 0, 1>; int mr = 4; int nr = 4; bool ConjugateLhs = false; bool ConjugateRhs = false; ResScalar = double]’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h:113:15:   required from ‘static void Eigen::internal::general_matrix_matrix_triangular_product<Index, LhsScalar, LhsStorageOrder, ConjugateLhs, RhsScalar, RhsStorageOrder, ConjugateRhs, 0, ResInnerStride, UpLo, Version>::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, Index, const ResScalar&, Eigen::internal::level3_blocking<LhsScalar, RhsScalar>&) [with Index = long int; LhsScalar = double; int LhsStorageOrder = 1; bool ConjugateLhs = false; RhsScalar = double; int RhsStorageOrder = 0; bool ConjugateRhs = false; int ResInnerStride = 1; int UpLo = 2; int Version = 0; ResScalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointProduct.h:113:12:   required from ‘static void Eigen::selfadjoint_product_selector<MatrixType, OtherType, UpLo, false>::run(MatrixType&, const OtherType&, const typename MatrixType::Scalar&) [with MatrixType = Eigen::Matrix<double, -1, -1>; OtherType = Eigen::Matrix<double, -1, -1, 1, -1, -1>; int UpLo = 2; typename MatrixType::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointProduct.h:126:62:   required from ‘Eigen::SelfAdjointView<MatrixType, UpLo>& Eigen::SelfAdjointView<MatrixType, Mode>::rankUpdate(const Eigen::MatrixBase<OtherDerived>&, const Scalar&) [with DerivedU = Eigen::Matrix<double, -1, -1, 1, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>; unsigned int UpLo = 2; Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:33:78:   required from ‘Eigen::Matrix<typename stan::value_type<T>::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0> >; stan::require_eigen_vt<std::is_arithmetic, T>* <anonymous> = 0; typename stan::value_type<T>::type = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20:   required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0>; stan::require_eigen_t<T_desired>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1920:103: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
 1920 |           const int SResPacketHalfSize = unpacket_traits<typename unpacket_traits<SResPacket>::half>::size;
      |                                                                                                       ^~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1921:138: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
 1921 |           const int SResPacketQuarterSize = unpacket_traits<typename unpacket_traits<typename unpacket_traits<SResPacket>::half>::half>::size;
      |                                                                                                                                          ^~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1921:138: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1977:135: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
 1977 |               typedef typename conditional<SwappedTraits::LhsProgress>=8,typename unpacket_traits<SResPacket>::half,SResPacket>::type SResPacketHalf;
      |                                                                                                                                       ^~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1978:135: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
 1978 |               typedef typename conditional<SwappedTraits::LhsProgress>=8,typename unpacket_traits<SLhsPacket>::half,SLhsPacket>::type SLhsPacketHalf;
      |                                                                                                                                       ^~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1979:135: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
 1979 |               typedef typename conditional<SwappedTraits::LhsProgress>=8,typename unpacket_traits<SRhsPacket>::half,SRhsPacket>::type SRhsPacketHalf;
      |                                                                                                                                       ^~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1980:135: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
 1980 |               typedef typename conditional<SwappedTraits::LhsProgress>=8,typename unpacket_traits<SAccPacket>::half,SAccPacket>::type SAccPacketHalf;
      |                                                                                                                                       ^~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet<double, 16>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57:   required from ‘struct Eigen::internal::traits<Eigen::Matrix<double, 4, 4> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<double, 4, 4> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from ‘class Eigen::Matrix<double, 4, 4>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h:155:52:   required from ‘void Eigen::internal::tribb_kernel<LhsScalar, RhsScalar, Index, mr, nr, ConjLhs, ConjRhs, ResInnerStride, UpLo>::operator()(ResScalar*, Index, Index, const LhsScalar*, const RhsScalar*, Index, Index, const ResScalar&) [with LhsScalar = double; RhsScalar = double; Index = long int; int mr = 4; int nr = 4; bool ConjLhs = false; bool ConjRhs = false; int ResInnerStride = 1; int UpLo = 2; ResScalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h:116:13:   required from ‘static void Eigen::internal::general_matrix_matrix_triangular_product<Index, LhsScalar, LhsStorageOrder, ConjugateLhs, RhsScalar, RhsStorageOrder, ConjugateRhs, 0, ResInnerStride, UpLo, Version>::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, Index, const ResScalar&, Eigen::internal::level3_blocking<LhsScalar, RhsScalar>&) [with Index = long int; LhsScalar = double; int LhsStorageOrder = 1; bool ConjugateLhs = false; RhsScalar = double; int RhsStorageOrder = 0; bool ConjugateRhs = false; int ResInnerStride = 1; int UpLo = 2; int Version = 0; ResScalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointProduct.h:113:12:   required from ‘static void Eigen::selfadjoint_product_selector<MatrixType, OtherType, UpLo, false>::run(MatrixType&, const OtherType&, const typename MatrixType::Scalar&) [with MatrixType = Eigen::Matrix<double, -1, -1>; OtherType = Eigen::Matrix<double, -1, -1, 1, -1, -1>; int UpLo = 2; typename MatrixType::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointProduct.h:126:62:   required from ‘Eigen::SelfAdjointView<MatrixType, UpLo>& Eigen::SelfAdjointView<MatrixType, Mode>::rankUpdate(const Eigen::MatrixBase<OtherDerived>&, const Scalar&) [with DerivedU = Eigen::Matrix<double, -1, -1, 1, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>; unsigned int UpLo = 2; Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:33:78:   required from ‘Eigen::Matrix<typename stan::value_type<T>::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0> >; stan::require_eigen_vt<std::is_arithmetic, T>* <anonymous> = 0; typename stan::value_type<T>::type = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20:   required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0>; stan::require_eigen_t<T_desired>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
  190 |          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
      |                                       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
  190 |          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
      |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
  208 |   typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
      |                                                                                        ^~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 4>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 4>, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 4>, 3>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Matrix<double, 4, 4> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Matrix<double, 4, 4> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<double, 4, 4> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h:116:13:   required from ‘static void Eigen::internal::general_matrix_matrix_triangular_product<Index, LhsScalar, LhsStorageOrder, ConjugateLhs, RhsScalar, RhsStorageOrder, ConjugateRhs, 0, ResInnerStride, UpLo, Version>::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, Index, const ResScalar&, Eigen::internal::level3_blocking<LhsScalar, RhsScalar>&) [with Index = long int; LhsScalar = double; int LhsStorageOrder = 1; bool ConjugateLhs = false; RhsScalar = double; int RhsStorageOrder = 0; bool ConjugateRhs = false; int ResInnerStride = 1; int UpLo = 2; int Version = 0; ResScalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointProduct.h:113:12:   required from ‘static void Eigen::selfadjoint_product_selector<MatrixType, OtherType, UpLo, false>::run(MatrixType&, const OtherType&, const typename MatrixType::Scalar&) [with MatrixType = Eigen::Matrix<double, -1, -1>; OtherType = Eigen::Matrix<double, -1, -1, 1, -1, -1>; int UpLo = 2; typename MatrixType::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointProduct.h:126:62:   required from ‘Eigen::SelfAdjointView<MatrixType, UpLo>& Eigen::SelfAdjointView<MatrixType, Mode>::rankUpdate(const Eigen::MatrixBase<OtherDerived>&, const Scalar&) [with DerivedU = Eigen::Matrix<double, -1, -1, 1, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>; unsigned int UpLo = 2; Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:33:78:   required from ‘Eigen::Matrix<typename stan::value_type<T>::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0> >; stan::require_eigen_vt<std::is_arithmetic, T>* <anonymous> = 0; typename stan::value_type<T>::type = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20:   required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0>; stan::require_eigen_t<T_desired>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   56 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase<Derived>&) [with Derived = Eigen::CwiseUnaryOp<scalar_abs2_op<double>, const Eigen::Matrix<double, -1, 1> >; Eigen::Index = long int]’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63:   required from ‘static Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::Scalar Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Matrix<double, -1, 1> >; Func = Eigen::internal::scalar_sum_op<double, double>; Evaluator = Eigen::internal::redux_evaluator<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Matrix<double, -1, 1> > >; Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56:   required from ‘typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Matrix<double, -1, 1> >; typename Eigen::internal::traits<T>::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25:   required from ‘typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::sum() const [with Derived = Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Matrix<double, -1, 1> >; typename Eigen::internal::traits<T>::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:98:46:   required from ‘typename Eigen::NumTraits<typename Eigen::internal::traits<T>::Scalar>::Real Eigen::MatrixBase<Derived>::squaredNorm() const [with Derived = Eigen::Matrix<double, -1, 1>; typename Eigen::NumTraits<typename Eigen::internal::traits<T>::Scalar>::Real = double; typename Eigen::internal::traits<T>::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/variance.hpp:28:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
  654 |   return internal::first_aligned<int(unpacket_traits<DefaultPacketType>::alignment),Derived>(m);
      |                                                                          ^~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:370:46:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, CoeffVectorType&) [with MatrixType = Eigen::Matrix<double, -1, -1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:449:31:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   56 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Product<Eigen::SelfAdjointView<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >, 0>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Product<Eigen::SelfAdjointView<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Product<Eigen::SelfAdjointView<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7:   required from ‘class Eigen::internal::dense_product_base<Eigen::SelfAdjointView<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >, 0, 7>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7:   required from ‘class Eigen::ProductImpl<Eigen::SelfAdjointView<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product<Eigen::SelfAdjointView<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:370:35:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, CoeffVectorType&) [with MatrixType = Eigen::Matrix<double, -1, -1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:449:31:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Diagonal<Eigen::Matrix<double, -1, -1>, 0>, -1, 1, false>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Diagonal<Eigen::Matrix<double, -1, -1>, 0>, -1, 1, false>, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Diagonal<Eigen::Matrix<double, -1, -1>, 0>, -1, 1, false>, 3>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Block<Eigen::Diagonal<Eigen::Matrix<double, -1, -1>, 0>, -1, 1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Block<Eigen::Diagonal<Eigen::Matrix<double, -1, -1>, 0>, -1, 1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Block<Eigen::Diagonal<Eigen::Matrix<double, -1, -1>, 0>, -1, 1, false>, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:325:26:   required from ‘static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix<double, -1, -1>; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:526:51:   required from ‘Eigen::LDLT<_MatrixType, _UpLo>& Eigen::LDLT<MatrixType, UpLo>::compute(const Eigen::EigenBase<OtherDerived>&) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>; int _UpLo = 1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:120:14:   required from ‘Eigen::LDLT<MatrixType, UpLo>::LDLT(const Eigen::EigenBase<OtherDerived>&) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>; int _UpLo = 1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:683:10:   required from ‘const Eigen::LDLT<typename Eigen::DenseBase<Derived>::PlainObject> Eigen::MatrixBase<Derived>::ldlt() const [with Derived = Eigen::Matrix<double, -1, -1>; typename Eigen::DenseBase<Derived>::PlainObject = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:45:67:   required from ‘void stan::math::check_pos_definite(const char*, const char*, const EigMat&) [with EigMat = Eigen::Matrix<double, -1, -1>; stan::require_matrix_t<T>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:21:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Block<Eigen::Diagonal<Eigen::Matrix<double, -1, -1>, 0>, -1, 1, false> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Block<Eigen::Diagonal<Eigen::Matrix<double, -1, -1>, 0>, -1, 1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Block<Eigen::Diagonal<Eigen::Matrix<double, -1, -1>, 0>, -1, 1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_abs_op<double>, const Eigen::Block<Eigen::Diagonal<Eigen::Matrix<double, -1, -1>, 0>, -1, 1, false>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Block<Eigen::Diagonal<Eigen::Matrix<double, -1, -1>, 0>, -1, 1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:325:43:   required from ‘static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix<double, -1, -1>; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:526:51:   required from ‘Eigen::LDLT<_MatrixType, _UpLo>& Eigen::LDLT<MatrixType, UpLo>::compute(const Eigen::EigenBase<OtherDerived>&) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>; int _UpLo = 1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:120:14:   required from ‘Eigen::LDLT<MatrixType, UpLo>::LDLT(const Eigen::EigenBase<OtherDerived>&) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>; int _UpLo = 1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:683:10:   required from ‘const Eigen::LDLT<typename Eigen::DenseBase<Derived>::PlainObject> Eigen::MatrixBase<Derived>::ldlt() const [with Derived = Eigen::Matrix<double, -1, -1>; typename Eigen::DenseBase<Derived>::PlainObject = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:45:67:   required from ‘void stan::math::check_pos_definite(const char*, const char*, const EigMat&) [with EigMat = Eigen::Matrix<double, -1, -1>; stan::require_matrix_t<T>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:21:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, false>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, false>, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, false>, 3>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, false>, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:352:35:   required from ‘static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix<double, -1, -1>; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:526:51:   required from ‘Eigen::LDLT<_MatrixType, _UpLo>& Eigen::LDLT<MatrixType, UpLo>::compute(const Eigen::EigenBase<OtherDerived>&) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>; int _UpLo = 1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:120:14:   required from ‘Eigen::LDLT<MatrixType, UpLo>::LDLT(const Eigen::EigenBase<OtherDerived>&) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>; int _UpLo = 1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:683:10:   required from ‘const Eigen::LDLT<typename Eigen::DenseBase<Derived>::PlainObject> Eigen::MatrixBase<Derived>::ldlt() const [with Derived = Eigen::Matrix<double, -1, -1>; typename Eigen::DenseBase<Derived>::PlainObject = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:45:67:   required from ‘void stan::math::check_pos_definite(const char*, const char*, const EigMat&) [with EigMat = Eigen::Matrix<double, -1, -1>; stan::require_matrix_t<T>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:21:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false> >, 2>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37:   required from ‘class Eigen::TransposeImpl<const Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   required from ‘class Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:358:80:   required from ‘static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix<double, -1, -1>; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:526:51:   required from ‘Eigen::LDLT<_MatrixType, _UpLo>& Eigen::LDLT<MatrixType, UpLo>::compute(const Eigen::EigenBase<OtherDerived>&) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>; int _UpLo = 1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:120:14:   required from ‘Eigen::LDLT<MatrixType, UpLo>::LDLT(const Eigen::EigenBase<OtherDerived>&) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>; int _UpLo = 1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:683:10:   required from ‘const Eigen::LDLT<typename Eigen::DenseBase<Derived>::PlainObject> Eigen::MatrixBase<Derived>::ldlt() const [with Derived = Eigen::Matrix<double, -1, -1>; typename Eigen::DenseBase<Derived>::PlainObject = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:45:67:   required from ‘void stan::math::check_pos_definite(const char*, const char*, const EigMat&) [with EigMat = Eigen::Matrix<double, -1, -1>; stan::require_matrix_t<T>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:21:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Product<Eigen::DiagonalWrapper<const Eigen::Block<Eigen::Diagonal<Eigen::Matrix<double, -1, -1>, 0>, -1, 1, false> >, Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false> >, 1>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Product<Eigen::DiagonalWrapper<const Eigen::Block<Eigen::Diagonal<Eigen::Matrix<double, -1, -1>, 0>, -1, 1, false> >, Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false> >, 1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Product<Eigen::DiagonalWrapper<const Eigen::Block<Eigen::Diagonal<Eigen::Matrix<double, -1, -1>, 0>, -1, 1, false> >, Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false> >, 1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7:   required from ‘class Eigen::internal::dense_product_base<Eigen::DiagonalWrapper<const Eigen::Block<Eigen::Diagonal<Eigen::Matrix<double, -1, -1>, 0>, -1, 1, false> >, Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false> >, 1, 7>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7:   required from ‘class Eigen::ProductImpl<Eigen::DiagonalWrapper<const Eigen::Block<Eigen::Diagonal<Eigen::Matrix<double, -1, -1>, 0>, -1, 1, false> >, Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false> >, 1, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product<Eigen::DiagonalWrapper<const Eigen::Block<Eigen::Diagonal<Eigen::Matrix<double, -1, -1>, 0>, -1, 1, false> >, Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false> >, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:358:67:   required from ‘static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix<double, -1, -1>; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:526:51:   required from ‘Eigen::LDLT<_MatrixType, _UpLo>& Eigen::LDLT<MatrixType, UpLo>::compute(const Eigen::EigenBase<OtherDerived>&) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>; int _UpLo = 1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:120:14:   required from ‘Eigen::LDLT<MatrixType, UpLo>::LDLT(const Eigen::EigenBase<OtherDerived>&) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>; int _UpLo = 1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:683:10:   required from ‘const Eigen::LDLT<typename Eigen::DenseBase<Derived>::PlainObject> Eigen::MatrixBase<Derived>::ldlt() const [with Derived = Eigen::Matrix<double, -1, -1>; typename Eigen::DenseBase<Derived>::PlainObject = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:45:67:   required from ‘void stan::math::check_pos_definite(const char*, const char*, const EigMat&) [with EigMat = Eigen::Matrix<double, -1, -1>; stan::require_matrix_t<T>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:21:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Product<Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>, Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>, 0>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Product<Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>, Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Product<Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>, Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:126:7:   required from ‘class Eigen::internal::dense_product_base<Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>, Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>, 0, 6>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7:   required from ‘class Eigen::ProductImpl<Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>, Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product<Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>, Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:359:35:   required from ‘static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix<double, -1, -1>; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:526:51:   required from ‘Eigen::LDLT<_MatrixType, _UpLo>& Eigen::LDLT<MatrixType, UpLo>::compute(const Eigen::EigenBase<OtherDerived>&) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>; int _UpLo = 1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:120:14:   required from ‘Eigen::LDLT<MatrixType, UpLo>::LDLT(const Eigen::EigenBase<OtherDerived>&) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>; int _UpLo = 1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:683:10:   required from ‘const Eigen::LDLT<typename Eigen::DenseBase<Derived>::PlainObject> Eigen::MatrixBase<Derived>::ldlt() const [with Derived = Eigen::Matrix<double, -1, -1>; typename Eigen::DenseBase<Derived>::PlainObject = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:45:67:   required from ‘void stan::math::check_pos_definite(const char*, const char*, const EigMat&) [with EigMat = Eigen::Matrix<double, -1, -1>; stan::require_matrix_t<T>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:21:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Product<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>, 0>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Product<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Product<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7:   required from ‘class Eigen::internal::dense_product_base<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>, 0, 7>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7:   required from ‘class Eigen::ProductImpl<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:361:32:   required from ‘static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix<double, -1, -1>; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:526:51:   required from ‘Eigen::LDLT<_MatrixType, _UpLo>& Eigen::LDLT<MatrixType, UpLo>::compute(const Eigen::EigenBase<OtherDerived>&) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>; int _UpLo = 1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:120:14:   required from ‘Eigen::LDLT<MatrixType, UpLo>::LDLT(const Eigen::EigenBase<OtherDerived>&) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>; int _UpLo = 1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:683:10:   required from ‘const Eigen::LDLT<typename Eigen::DenseBase<Derived>::PlainObject> Eigen::MatrixBase<Derived>::ldlt() const [with Derived = Eigen::Matrix<double, -1, -1>; typename Eigen::DenseBase<Derived>::PlainObject = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:45:67:   required from ‘void stan::math::check_pos_definite(const char*, const char*, const EigMat&) [with EigMat = Eigen::Matrix<double, -1, -1>; stan::require_matrix_t<T>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:21:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >, 3>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::ArrayWrapper<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::ArrayWrapper<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7:   required from ‘class Eigen::ArrayWrapper<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:379:56:   required from ‘static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix<double, -1, -1>; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:526:51:   required from ‘Eigen::LDLT<_MatrixType, _UpLo>& Eigen::LDLT<MatrixType, UpLo>::compute(const Eigen::EigenBase<OtherDerived>&) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>; int _UpLo = 1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:120:14:   required from ‘Eigen::LDLT<MatrixType, UpLo>::LDLT(const Eigen::EigenBase<OtherDerived>&) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>; int _UpLo = 1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:683:10:   required from ‘const Eigen::LDLT<typename Eigen::DenseBase<Derived>::PlainObject> Eigen::MatrixBase<Derived>::ldlt() const [with Derived = Eigen::Matrix<double, -1, -1>; typename Eigen::DenseBase<Derived>::PlainObject = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:45:67:   required from ‘void stan::math::check_pos_definite(const char*, const char*, const EigMat&) [with EigMat = Eigen::Matrix<double, -1, -1>; stan::require_matrix_t<T>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:21:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, false> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, false> >, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, false> >, 3>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::ArrayWrapper<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::ArrayWrapper<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7:   required from ‘class Eigen::ArrayWrapper<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:387:32:   required from ‘static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix<double, -1, -1>; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:526:51:   required from ‘Eigen::LDLT<_MatrixType, _UpLo>& Eigen::LDLT<MatrixType, UpLo>::compute(const Eigen::EigenBase<OtherDerived>&) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>; int _UpLo = 1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:120:14:   required from ‘Eigen::LDLT<MatrixType, UpLo>::LDLT(const Eigen::EigenBase<OtherDerived>&) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>; int _UpLo = 1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:683:10:   required from ‘const Eigen::LDLT<typename Eigen::DenseBase<Derived>::PlainObject> Eigen::MatrixBase<Derived>::ldlt() const [with Derived = Eigen::Matrix<double, -1, -1>; typename Eigen::DenseBase<Derived>::PlainObject = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:45:67:   required from ‘void stan::math::check_pos_definite(const char*, const char*, const EigMat&) [with EigMat = Eigen::Matrix<double, -1, -1>; stan::require_matrix_t<T>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:21:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase<Derived>&) [with Derived = Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >; Eigen::Index = long int]’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63:   required from ‘static Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::Scalar Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >; Func = Eigen::internal::scalar_sum_op<double, double>; Evaluator = Eigen::internal::redux_evaluator<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > >; Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56:   required from ‘typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >; typename Eigen::internal::traits<T>::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25:   required from ‘typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::sum() const [with Derived = Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >; typename Eigen::internal::traits<T>::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_simplex.hpp:38:33:   required from ‘void stan::math::check_simplex(const char*, const char*, const T&) [with T = Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >; stan::require_matrix_t<T>* <anonymous> = 0]’
stanExports_shrinkage.h:217:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
  654 |   return internal::first_aligned<int(unpacket_traits<DefaultPacketType>::alignment),Derived>(m);
      |                                                                          ^~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Matrix<double, -1, 1> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Matrix<double, -1, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Matrix<double, -1, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Matrix<double, -1, 1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_linesearch.hpp:247:0:   required from ‘int stan::optimization::WolfeLineSearch(FunctorType&, Scalar&, XType&, Scalar&, XType&, const XType&, const XType&, const Scalar&, const XType&, const Scalar&, const Scalar&, const Scalar&, const Scalar&, const Scalar&) [with FunctorType = ModelAdaptor<model_shrinkage_namespace::model_shrinkage, false>; Scalar = double; XType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:209:0:   required from ‘int stan::optimization::BFGSMinimizer<FunctorType, QNUpdateType, Scalar, DimAtCompile>::step() [with FunctorType = stan::optimization::ModelAdaptor<model_shrinkage_namespace::model_shrinkage, false>; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0:   required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage; bool jacobian = false]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:15:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   56 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Matrix<double, -1, 1> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Matrix<double, -1, 1> >, 2>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Transpose<const Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Transpose<const Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37:   required from ‘class Eigen::TransposeImpl<const Eigen::Matrix<double, -1, 1>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   required from ‘class Eigen::Transpose<const Eigen::Matrix<double, -1, 1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:34:0:   required from ‘Scalar stan::optimization::BFGSUpdate_HInv<Scalar, DimAtCompile>::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0:   required from ‘int stan::optimization::BFGSMinimizer<FunctorType, QNUpdateType, Scalar, DimAtCompile>::step() [with FunctorType = stan::optimization::ModelAdaptor<model_shrinkage_namespace::model_shrinkage, false>; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0:   required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage; bool jacobian = false]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:15:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Matrix<double, -1, 1> >, Eigen::Transpose<const Eigen::Matrix<double, -1, 1> >, 0>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Matrix<double, -1, 1> >, Eigen::Transpose<const Eigen::Matrix<double, -1, 1> >, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Matrix<double, -1, 1> >, Eigen::Transpose<const Eigen::Matrix<double, -1, 1> >, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7:   required from ‘class Eigen::internal::dense_product_base<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Matrix<double, -1, 1> >, Eigen::Transpose<const Eigen::Matrix<double, -1, 1> >, 0, 5>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7:   required from ‘class Eigen::ProductImpl<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Matrix<double, -1, 1> >, Eigen::Transpose<const Eigen::Matrix<double, -1, 1> >, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Matrix<double, -1, 1> >, Eigen::Transpose<const Eigen::Matrix<double, -1, 1> >, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:34:0:   required from ‘Scalar stan::optimization::BFGSUpdate_HInv<Scalar, DimAtCompile>::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0:   required from ‘int stan::optimization::BFGSMinimizer<FunctorType, QNUpdateType, Scalar, DimAtCompile>::step() [with FunctorType = stan::optimization::ModelAdaptor<model_shrinkage_namespace::model_shrinkage, false>; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0:   required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage; bool jacobian = false]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:15:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_identity_op<double>, Eigen::Matrix<double, -1, -1> >, const Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Matrix<double, -1, 1> >, Eigen::Transpose<const Eigen::Matrix<double, -1, 1> >, 0> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_identity_op<double>, Eigen::Matrix<double, -1, -1> >, const Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Matrix<double, -1, 1> >, Eigen::Transpose<const Eigen::Matrix<double, -1, 1> >, 0> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_identity_op<double>, Eigen::Matrix<double, -1, -1> >, const Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Matrix<double, -1, 1> >, Eigen::Transpose<const Eigen::Matrix<double, -1, 1> >, 0> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_identity_op<double>, Eigen::Matrix<double, -1, -1> >, const Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Matrix<double, -1, 1> >, Eigen::Transpose<const Eigen::Matrix<double, -1, 1> >, 0>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_identity_op<double>, Eigen::Matrix<double, -1, -1> >, const Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Matrix<double, -1, 1> >, Eigen::Transpose<const Eigen::Matrix<double, -1, 1> >, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:34:0:   required from ‘Scalar stan::optimization::BFGSUpdate_HInv<Scalar, DimAtCompile>::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0:   required from ‘int stan::optimization::BFGSMinimizer<FunctorType, QNUpdateType, Scalar, DimAtCompile>::step() [with FunctorType = stan::optimization::ModelAdaptor<model_shrinkage_namespace::model_shrinkage, false>; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0:   required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage; bool jacobian = false]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:15:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, 0>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7:   required from ‘class Eigen::internal::dense_product_base<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, 0, 8>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7:   required from ‘class Eigen::ProductImpl<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:37:0:   required from ‘Scalar stan::optimization::BFGSUpdate_HInv<Scalar, DimAtCompile>::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0:   required from ‘int stan::optimization::BFGSMinimizer<FunctorType, QNUpdateType, Scalar, DimAtCompile>::step() [with FunctorType = stan::optimization::ModelAdaptor<model_shrinkage_namespace::model_shrinkage, false>; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0:   required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage; bool jacobian = false]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:15:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Product<Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, -1>, 0>, Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, 0>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Product<Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, -1>, 0>, Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Product<Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, -1>, 0>, Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7:   required from ‘class Eigen::internal::dense_product_base<Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, -1>, 0>, Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, 0, 8>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7:   required from ‘class Eigen::ProductImpl<Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, -1>, 0>, Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product<Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, -1>, 0>, Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:40:0:   required from ‘Scalar stan::optimization::BFGSUpdate_HInv<Scalar, DimAtCompile>::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0:   required from ‘int stan::optimization::BFGSMinimizer<FunctorType, QNUpdateType, Scalar, DimAtCompile>::step() [with FunctorType = stan::optimization::ModelAdaptor<model_shrinkage_namespace::model_shrinkage, false>; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0:   required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage; bool jacobian = false]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:15:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 0> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 0> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 0> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_opposite_op<double>, const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 0>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:55:0:   required from ‘void stan::optimization::BFGSUpdate_HInv<Scalar, DimAtCompile>::search_direction(VectorT&, const VectorT&) const [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:254:0:   required from ‘int stan::optimization::BFGSMinimizer<FunctorType, QNUpdateType, Scalar, DimAtCompile>::step() [with FunctorType = stan::optimization::ModelAdaptor<model_shrinkage_namespace::model_shrinkage, false>; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0:   required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage; bool jacobian = false]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:15:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<stan::math::value_of<Eigen::ArrayWrapper<const Eigen::Matrix<var_value<double>, -1, 1> > >(Eigen::ArrayWrapper<const Eigen::Matrix<var_value<double>, -1, 1> >&&)::<lambda(auto:11&)>::<lambda(const auto:12&)>, const Eigen::ArrayWrapper<const Eigen::Matrix<stan::math::var_value<double>, -1, 1> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryOp<stan::math::value_of<Eigen::ArrayWrapper<const Eigen::Matrix<var_value<double>, -1, 1> > >(Eigen::ArrayWrapper<const Eigen::Matrix<var_value<double>, -1, 1> >&&)::<lambda(auto:11&)>::<lambda(const auto:12&)>, const Eigen::ArrayWrapper<const Eigen::Matrix<stan::math::var_value<double>, -1, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseUnaryOp<stan::math::value_of<Eigen::ArrayWrapper<const Eigen::Matrix<var_value<double>, -1, 1> > >(Eigen::ArrayWrapper<const Eigen::Matrix<var_value<double>, -1, 1> >&&)::<lambda(auto:11&)>::<lambda(const auto:12&)>, const Eigen::ArrayWrapper<const Eigen::Matrix<stan::math::var_value<double>, -1, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl<stan::math::value_of<Eigen::ArrayWrapper<const Eigen::Matrix<var_value<double>, -1, 1> > >(Eigen::ArrayWrapper<const Eigen::Matrix<var_value<double>, -1, 1> >&&)::<lambda(auto:11&)>::<lambda(const auto:12&)>, const Eigen::ArrayWrapper<const Eigen::Matrix<stan::math::var_value<double>, -1, 1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp<stan::math::value_of<Eigen::ArrayWrapper<const Eigen::Matrix<var_value<double>, -1, 1> > >(Eigen::ArrayWrapper<const Eigen::Matrix<var_value<double>, -1, 1> >&&)::<lambda(auto:11&)>::<lambda(const auto:12&)>, const Eigen::ArrayWrapper<const Eigen::Matrix<stan::math::var_value<double>, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/value_of.hpp:75:75:   required from ‘stan::math::value_of<Eigen::ArrayWrapper<const Eigen::Matrix<var_value<double>, -1, 1> > >(Eigen::ArrayWrapper<const Eigen::Matrix<var_value<double>, -1, 1> >&&)::<lambda(auto:11&)> [with auto:11 = Eigen::ArrayWrapper<const Eigen::Matrix<stan::math::var_value<double>, -1, 1> >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/meta/holder.hpp:370:41:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:58:64:   required from ‘stan::return_type_t<T, L, U> stan::math::normal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = true; T_y = Eigen::Matrix<var_value<double>, -1, 1>; T_loc = var_value<double>; T_scale = var_value<double>; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t<T_y, T_scale_succ, T_scale_fail>* <anonymous> = 0; stan::return_type_t<T, L, U> = var_value<double>]’
stanExports_shrinkage.h:328:0:   required from ‘stan::scalar_type_t<T2> model_shrinkage_namespace::model_shrinkage::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector<stan::math::var_value<double>, std::allocator<stan::math::var_value<double> > >; VecI = std::vector<int>; stan::require_vector_like_t<VecR>* <anonymous> = 0; stan::require_vector_like_vt<std::is_integral, VecI>* <anonymous> = 0; stan::scalar_type_t<T2> = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
stanExports_shrinkage.h:884:0:   required from ‘T_ model_shrinkage_namespace::model_shrinkage::log_prob(std::vector<T_l>&, std::vector<int>&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0:   required from ‘double stan::model::log_prob_grad(const M&, std::vector<double>&, std::vector<int>&, std::vector<double>&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_shrinkage_namespace::model_shrinkage; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::grad_log_prob(SEXP, SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:23:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:77:40:   required from ‘stan::return_type_t<T, L, U> stan::math::normal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = true; T_y = Eigen::Matrix<var_value<double>, -1, 1>; T_loc = var_value<double>; T_scale = var_value<double>; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t<T_y, T_scale_succ, T_scale_fail>* <anonymous> = 0; stan::return_type_t<T, L, U> = var_value<double>]’
stanExports_shrinkage.h:328:0:   required from ‘stan::scalar_type_t<T2> model_shrinkage_namespace::model_shrinkage::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector<stan::math::var_value<double>, std::allocator<stan::math::var_value<double> > >; VecI = std::vector<int>; stan::require_vector_like_t<VecR>* <anonymous> = 0; stan::require_vector_like_vt<std::is_integral, VecI>* <anonymous> = 0; stan::scalar_type_t<T2> = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
stanExports_shrinkage.h:884:0:   required from ‘T_ model_shrinkage_namespace::model_shrinkage::log_prob(std::vector<T_l>&, std::vector<int>&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0:   required from ‘double stan::model::log_prob_grad(const M&, std::vector<double>&, std::vector<int>&, std::vector<double>&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_shrinkage_namespace::model_shrinkage; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::grad_log_prob(SEXP, SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:23:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:77:50:   required from ‘stan::return_type_t<T, L, U> stan::math::normal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = true; T_y = Eigen::Matrix<var_value<double>, -1, 1>; T_loc = var_value<double>; T_scale = var_value<double>; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t<T_y, T_scale_succ, T_scale_fail>* <anonymous> = 0; stan::return_type_t<T, L, U> = var_value<double>]’
stanExports_shrinkage.h:328:0:   required from ‘stan::scalar_type_t<T2> model_shrinkage_namespace::model_shrinkage::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector<stan::math::var_value<double>, std::allocator<stan::math::var_value<double> > >; VecI = std::vector<int>; stan::require_vector_like_t<VecR>* <anonymous> = 0; stan::require_vector_like_vt<std::is_integral, VecI>* <anonymous> = 0; stan::scalar_type_t<T2> = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
stanExports_shrinkage.h:884:0:   required from ‘T_ model_shrinkage_namespace::model_shrinkage::log_prob(std::vector<T_l>&, std::vector<int>&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0:   required from ‘double stan::model::log_prob_grad(const M&, std::vector<double>&, std::vector<int>&, std::vector<double>&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_shrinkage_namespace::model_shrinkage; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::grad_log_prob(SEXP, SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:23:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:79:62:   required from ‘stan::return_type_t<T, L, U> stan::math::normal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = true; T_y = Eigen::Matrix<var_value<double>, -1, 1>; T_loc = var_value<double>; T_scale = var_value<double>; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t<T_y, T_scale_succ, T_scale_fail>* <anonymous> = 0; stan::return_type_t<T, L, U> = var_value<double>]’
stanExports_shrinkage.h:328:0:   required from ‘stan::scalar_type_t<T2> model_shrinkage_namespace::model_shrinkage::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector<stan::math::var_value<double>, std::allocator<stan::math::var_value<double> > >; VecI = std::vector<int>; stan::require_vector_like_t<VecR>* <anonymous> = 0; stan::require_vector_like_vt<std::is_integral, VecI>* <anonymous> = 0; stan::scalar_type_t<T2> = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
stanExports_shrinkage.h:884:0:   required from ‘T_ model_shrinkage_namespace::model_shrinkage::log_prob(std::vector<T_l>&, std::vector<int>&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0:   required from ‘double stan::model::log_prob_grad(const M&, std::vector<double>&, std::vector<int>&, std::vector<double>&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_shrinkage_namespace::model_shrinkage; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::grad_log_prob(SEXP, SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:23:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Array<double, -1, 1> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Array<double, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Array<double, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Array<double, -1, 1>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Array<double, -1, 1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:94:50:   required from ‘stan::return_type_t<T, L, U> stan::math::normal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = true; T_y = Eigen::Matrix<var_value<double>, -1, 1>; T_loc = var_value<double>; T_scale = var_value<double>; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t<T_y, T_scale_succ, T_scale_fail>* <anonymous> = 0; stan::return_type_t<T, L, U> = var_value<double>]’
stanExports_shrinkage.h:328:0:   required from ‘stan::scalar_type_t<T2> model_shrinkage_namespace::model_shrinkage::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector<stan::math::var_value<double>, std::allocator<stan::math::var_value<double> > >; VecI = std::vector<int>; stan::require_vector_like_t<VecR>* <anonymous> = 0; stan::require_vector_like_vt<std::is_integral, VecI>* <anonymous> = 0; stan::scalar_type_t<T2> = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
stanExports_shrinkage.h:884:0:   required from ‘T_ model_shrinkage_namespace::model_shrinkage::log_prob(std::vector<T_l>&, std::vector<int>&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0:   required from ‘double stan::model::log_prob_grad(const M&, std::vector<double>&, std::vector<int>&, std::vector<double>&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_shrinkage_namespace::model_shrinkage; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::grad_log_prob(SEXP, SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:23:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Array<double, -1, 1> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Array<double, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Array<double, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_opposite_op<double>, const Eigen::Array<double, -1, 1>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Array<double, -1, 1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:96:35:   required from ‘stan::return_type_t<T, L, U> stan::math::normal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = true; T_y = Eigen::Matrix<var_value<double>, -1, 1>; T_loc = var_value<double>; T_scale = var_value<double>; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t<T_y, T_scale_succ, T_scale_fail>* <anonymous> = 0; stan::return_type_t<T, L, U> = var_value<double>]’
stanExports_shrinkage.h:328:0:   required from ‘stan::scalar_type_t<T2> model_shrinkage_namespace::model_shrinkage::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector<stan::math::var_value<double>, std::allocator<stan::math::var_value<double> > >; VecI = std::vector<int>; stan::require_vector_like_t<VecR>* <anonymous> = 0; stan::require_vector_like_vt<std::is_integral, VecI>* <anonymous> = 0; stan::scalar_type_t<T2> = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
stanExports_shrinkage.h:884:0:   required from ‘T_ model_shrinkage_namespace::model_shrinkage::log_prob(std::vector<T_l>&, std::vector<int>&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0:   required from ‘double stan::model::log_prob_grad(const M&, std::vector<double>&, std::vector<int>&, std::vector<double>&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_shrinkage_namespace::model_shrinkage; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::grad_log_prob(SEXP, SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:23:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:99:59:   required from ‘stan::return_type_t<T, L, U> stan::math::normal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = true; T_y = Eigen::Matrix<var_value<double>, -1, 1>; T_loc = var_value<double>; T_scale = var_value<double>; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t<T_y, T_scale_succ, T_scale_fail>* <anonymous> = 0; stan::return_type_t<T, L, U> = var_value<double>]’
stanExports_shrinkage.h:328:0:   required from ‘stan::scalar_type_t<T2> model_shrinkage_namespace::model_shrinkage::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector<stan::math::var_value<double>, std::allocator<stan::math::var_value<double> > >; VecI = std::vector<int>; stan::require_vector_like_t<VecR>* <anonymous> = 0; stan::require_vector_like_vt<std::is_integral, VecI>* <anonymous> = 0; stan::scalar_type_t<T2> = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
stanExports_shrinkage.h:884:0:   required from ‘T_ model_shrinkage_namespace::model_shrinkage::log_prob(std::vector<T_l>&, std::vector<int>&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0:   required from ‘double stan::model::log_prob_grad(const M&, std::vector<double>&, std::vector<int>&, std::vector<double>&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_shrinkage_namespace::model_shrinkage; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::grad_log_prob(SEXP, SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:23:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, -1, 1, false>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, -1, 1, false>, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, -1, 1, false>, 3>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Block<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, -1, 1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Block<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, -1, 1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Block<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, -1, 1, false>, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:363:59:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, CoeffVectorType&) [with MatrixType = Eigen::Matrix<double, -1, -1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:449:31:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true> >’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:268:7:   required from ‘Eigen::MapBase<Derived, 1>::ScalarWithConstIfNotLvalue& Eigen::MapBase<Derived, 1>::coeffRef(Eigen::Index) [with Derived = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>; ScalarWithConstIfNotLvalue = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:367:25:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, CoeffVectorType&) [with MatrixType = Eigen::Matrix<double, -1, -1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:449:31:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
 1071 |     PacketAlignment = unpacket_traits<PacketScalar>::alignment,
      |                                                      ^~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator<Eigen::Block<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, 1, true> >’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Jacobi/Jacobi.h:475:5:   required from ‘void Eigen::internal::apply_rotation_in_the_plane(Eigen::DenseBase<Derived>&, Eigen::DenseBase<Derived>&, const Eigen::JacobiRotation<OtherScalar>&) [with VectorX = Eigen::Block<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, 1, true>; VectorY = Eigen::Block<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, 1, true>; OtherScalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Jacobi/Jacobi.h:315:40:   required from ‘void Eigen::MatrixBase<Derived>::applyOnTheRight(Eigen::Index, Eigen::Index, const Eigen::JacobiRotation<OtherScalar>&) [with OtherScalar = double; Derived = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; Eigen::Index = long int]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:895:24:   required from ‘void Eigen::internal::tridiagonal_qr_step(RealScalar*, RealScalar*, Index, Index, Scalar*, Index) [with int StorageOrder = 0; RealScalar = double; Scalar = double; Index = long int]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:548:87:   required from ‘Eigen::ComputationInfo Eigen::internal::computeFromTridiagonal_impl(DiagType&, SubDiagType&, Eigen::Index, bool, MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagType = Eigen::Matrix<double, -1, 1>; SubDiagType = Eigen::Matrix<double, -1, 1>; Eigen::Index = long int]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:460:49:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator<Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false> >’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Visitor.h:79:51:   required from ‘class Eigen::internal::visitor_evaluator<Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Visitor.h:123:17:   required from ‘void Eigen::DenseBase<Derived>::visit(Visitor&) const [with Visitor = Eigen::internal::min_coeff_visitor<Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>, 0>; Derived = Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Visitor.h:323:14:   required from ‘typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::minCoeff(IndexType*) const [with int NaNPropagation = 0; IndexType = long int; Derived = Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>; typename Eigen::internal::traits<T>::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:496:37:   required from ‘typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::minCoeff(IndexType*) const [with IndexType = long int; Derived = Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>; typename Eigen::internal::traits<T>::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:563:35:   required from ‘Eigen::ComputationInfo Eigen::internal::computeFromTridiagonal_impl(DiagType&, SubDiagType&, Eigen::Index, bool, MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagType = Eigen::Matrix<double, -1, 1>; SubDiagType = Eigen::Matrix<double, -1, 1>; Eigen::Index = long int]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:460:49:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_abs_op<double>, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:221:22:   required from ‘static typename Eigen::NumTraits<typename Eigen::internal::traits<T>::Scalar>::Real Eigen::internal::lpNorm_selector<Derived, 1>::run(const Eigen::MatrixBase<Derived>&) [with Derived = Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>; typename Eigen::NumTraits<typename Eigen::internal::traits<T>::Scalar>::Real = double; typename Eigen::internal::traits<T>::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:269:52:   required from ‘typename Eigen::NumTraits<typename Eigen::internal::traits<T>::Scalar>::Real Eigen::MatrixBase<Derived>::lpNorm() const [with int p = 1; Derived = Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>; typename Eigen::NumTraits<typename Eigen::internal::traits<T>::Scalar>::Real = double; typename Eigen::internal::traits<T>::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:514:74:   required from ‘Eigen::LDLT<_MatrixType, _UpLo>& Eigen::LDLT<MatrixType, UpLo>::compute(const Eigen::EigenBase<OtherDerived>&) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>; int _UpLo = 1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:120:14:   required from ‘Eigen::LDLT<MatrixType, UpLo>::LDLT(const Eigen::EigenBase<OtherDerived>&) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>; int _UpLo = 1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:683:10:   required from ‘const Eigen::LDLT<typename Eigen::DenseBase<Derived>::PlainObject> Eigen::MatrixBase<Derived>::ldlt() const [with Derived = Eigen::Matrix<double, -1, -1>; typename Eigen::DenseBase<Derived>::PlainObject = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:45:67:   required from ‘void stan::math::check_pos_definite(const char*, const char*, const EigMat&) [with EigMat = Eigen::Matrix<double, -1, -1>; stan::require_matrix_t<T>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:21:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   56 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>, 1, -1, false> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>, 1, -1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>, 1, -1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_abs_op<double>, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>, 1, -1, false>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>, 1, -1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:221:22:   required from ‘static typename Eigen::NumTraits<typename Eigen::internal::traits<T>::Scalar>::Real Eigen::internal::lpNorm_selector<Derived, 1>::run(const Eigen::MatrixBase<Derived>&) [with Derived = Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>, 1, -1, false>; typename Eigen::NumTraits<typename Eigen::internal::traits<T>::Scalar>::Real = double; typename Eigen::internal::traits<T>::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:269:52:   required from ‘typename Eigen::NumTraits<typename Eigen::internal::traits<T>::Scalar>::Real Eigen::MatrixBase<Derived>::lpNorm() const [with int p = 1; Derived = Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>, 1, -1, false>; typename Eigen::NumTraits<typename Eigen::internal::traits<T>::Scalar>::Real = double; typename Eigen::internal::traits<T>::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:514:125:   required from ‘Eigen::LDLT<_MatrixType, _UpLo>& Eigen::LDLT<MatrixType, UpLo>::compute(const Eigen::EigenBase<OtherDerived>&) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>; int _UpLo = 1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:120:14:   required from ‘Eigen::LDLT<MatrixType, UpLo>::LDLT(const Eigen::EigenBase<OtherDerived>&) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>; int _UpLo = 1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:683:10:   required from ‘const Eigen::LDLT<typename Eigen::DenseBase<Derived>::PlainObject> Eigen::MatrixBase<Derived>::ldlt() const [with Derived = Eigen::Matrix<double, -1, -1>; typename Eigen::DenseBase<Derived>::PlainObject = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:45:67:   required from ‘void stan::math::check_pos_definite(const char*, const char*, const EigMat&) [with EigMat = Eigen::Matrix<double, -1, -1>; stan::require_matrix_t<T>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:21:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1384:41:   required from ‘struct Eigen::internal::evaluator_wrapper_base<Eigen::ArrayWrapper<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1464:8:   required from ‘struct Eigen::internal::unary_evaluator<Eigen::ArrayWrapper<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >, Eigen::internal::IndexBased, double>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8:   required from ‘struct Eigen::internal::evaluator<Eigen::ArrayWrapper<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8:   required from ‘struct Eigen::internal::evaluator<const Eigen::ArrayWrapper<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:41:   required from ‘struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_EQ>, const Eigen::ArrayWrapper<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:379:74:   required from ‘static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix<double, -1, -1>; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:526:51:   required from ‘Eigen::LDLT<_MatrixType, _UpLo>& Eigen::LDLT<MatrixType, UpLo>::compute(const Eigen::EigenBase<OtherDerived>&) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>; int _UpLo = 1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:120:14:   required from ‘Eigen::LDLT<MatrixType, UpLo>::LDLT(const Eigen::EigenBase<OtherDerived>&) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>; int _UpLo = 1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:683:10:   required from ‘const Eigen::LDLT<typename Eigen::DenseBase<Derived>::PlainObject> Eigen::MatrixBase<Derived>::ldlt() const [with Derived = Eigen::Matrix<double, -1, -1>; typename Eigen::DenseBase<Derived>::PlainObject = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:45:67:   required from ‘void stan::math::check_pos_definite(const char*, const char*, const EigMat&) [with EigMat = Eigen::Matrix<double, -1, -1>; stan::require_matrix_t<T>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:21:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
 1071 |     PacketAlignment = unpacket_traits<PacketScalar>::alignment,
      |                                                      ^~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, false> >’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1384:41:   required from ‘struct Eigen::internal::evaluator_wrapper_base<Eigen::ArrayWrapper<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1464:8:   required from ‘struct Eigen::internal::unary_evaluator<Eigen::ArrayWrapper<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, false> >, Eigen::internal::IndexBased, double>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8:   required from ‘struct Eigen::internal::evaluator<Eigen::ArrayWrapper<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8:   required from ‘struct Eigen::internal::evaluator<const Eigen::ArrayWrapper<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:41:   required from ‘struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_EQ>, const Eigen::ArrayWrapper<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, false> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:387:50:   required from ‘static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix<double, -1, -1>; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:526:51:   required from ‘Eigen::LDLT<_MatrixType, _UpLo>& Eigen::LDLT<MatrixType, UpLo>::compute(const Eigen::EigenBase<OtherDerived>&) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>; int _UpLo = 1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:120:14:   required from ‘Eigen::LDLT<MatrixType, UpLo>::LDLT(const Eigen::EigenBase<OtherDerived>&) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>; int _UpLo = 1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:683:10:   required from ‘const Eigen::LDLT<typename Eigen::DenseBase<Derived>::PlainObject> Eigen::MatrixBase<Derived>::ldlt() const [with Derived = Eigen::Matrix<double, -1, -1>; typename Eigen::DenseBase<Derived>::PlainObject = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:45:67:   required from ‘void stan::math::check_pos_definite(const char*, const char*, const EigMat&) [with EigMat = Eigen::Matrix<double, -1, -1>; stan::require_matrix_t<T>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:21:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:77:50:   required from ‘stan::return_type_t<T, L, U> stan::math::normal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = false; T_y = Eigen::Matrix<double, -1, 1>; T_loc = double; T_scale = double; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t<T_y, T_scale_succ, T_scale_fail>* <anonymous> = 0; stan::return_type_t<T, L, U> = double]’
stanExports_shrinkage.h:328:0:   required from ‘stan::scalar_type_t<T2> model_shrinkage_namespace::model_shrinkage::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector<double>; VecI = std::vector<int>; stan::require_vector_like_t<VecR>* <anonymous> = 0; stan::require_vector_like_vt<std::is_integral, VecI>* <anonymous> = 0; stan::scalar_type_t<T2> = double; std::ostream = std::basic_ostream<char>]’
stanExports_shrinkage.h:884:0:   required from ‘T_ model_shrinkage_namespace::model_shrinkage::log_prob(std::vector<T_l>&, std::vector<int>&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0:   required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage; bool jacobian = false]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:15:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   56 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Array<double, -1, 1> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Array<double, -1, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Array<double, -1, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Array<double, -1, 1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Array<double, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:96:35:   required from ‘stan::return_type_t<T, L, U> stan::math::normal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = false; T_y = Eigen::Matrix<double, -1, 1>; T_loc = double; T_scale = double; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t<T_y, T_scale_succ, T_scale_fail>* <anonymous> = 0; stan::return_type_t<T, L, U> = double]’
stanExports_shrinkage.h:328:0:   required from ‘stan::scalar_type_t<T2> model_shrinkage_namespace::model_shrinkage::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector<double>; VecI = std::vector<int>; stan::require_vector_like_t<VecR>* <anonymous> = 0; stan::require_vector_like_vt<std::is_integral, VecI>* <anonymous> = 0; stan::scalar_type_t<T2> = double; std::ostream = std::basic_ostream<char>]’
stanExports_shrinkage.h:884:0:   required from ‘T_ model_shrinkage_namespace::model_shrinkage::log_prob(std::vector<T_l>&, std::vector<int>&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0:   required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage; bool jacobian = false]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:15:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:99:45:   required from ‘stan::return_type_t<T, L, U> stan::math::normal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = false; T_y = Eigen::Matrix<double, -1, 1>; T_loc = double; T_scale = double; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t<T_y, T_scale_succ, T_scale_fail>* <anonymous> = 0; stan::return_type_t<T, L, U> = double]’
stanExports_shrinkage.h:328:0:   required from ‘stan::scalar_type_t<T2> model_shrinkage_namespace::model_shrinkage::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector<double>; VecI = std::vector<int>; stan::require_vector_like_t<VecR>* <anonymous> = 0; stan::require_vector_like_vt<std::is_integral, VecI>* <anonymous> = 0; stan::scalar_type_t<T2> = double; std::ostream = std::basic_ostream<char>]’
stanExports_shrinkage.h:884:0:   required from ‘T_ model_shrinkage_namespace::model_shrinkage::log_prob(std::vector<T_l>&, std::vector<int>&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0:   required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage; bool jacobian = false]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:15:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:99:59:   required from ‘stan::return_type_t<T, L, U> stan::math::normal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = false; T_y = Eigen::Matrix<double, -1, 1>; T_loc = double; T_scale = double; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t<T_y, T_scale_succ, T_scale_fail>* <anonymous> = 0; stan::return_type_t<T, L, U> = double]’
stanExports_shrinkage.h:328:0:   required from ‘stan::scalar_type_t<T2> model_shrinkage_namespace::model_shrinkage::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector<double>; VecI = std::vector<int>; stan::require_vector_like_t<VecR>* <anonymous> = 0; stan::require_vector_like_vt<std::is_integral, VecI>* <anonymous> = 0; stan::scalar_type_t<T2> = double; std::ostream = std::basic_ostream<char>]’
stanExports_shrinkage.h:884:0:   required from ‘T_ model_shrinkage_namespace::model_shrinkage::log_prob(std::vector<T_l>&, std::vector<int>&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0:   required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage; bool jacobian = false]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:15:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:37:44:   required from ‘static Eigen::internal::dot_nocheck<T, U, NeedToTranspose>::ResScalar Eigen::internal::dot_nocheck<T, U, NeedToTranspose>::run(const Eigen::MatrixBase<Derived>&, const Eigen::MatrixBase<U>&) [with T = Eigen::Matrix<double, -1, 1>; U = Eigen::Matrix<double, -1, 1>; bool NeedToTranspose = false; ResScalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58:   required from ‘typename Eigen::ScalarBinaryOpTraits<typename Eigen::internal::traits<T>::Scalar, typename Eigen::internal::traits<OtherDerived>::Scalar>::ReturnType Eigen::MatrixBase<Derived>::dot(const Eigen::MatrixBase<OtherDerived>&) const [with OtherDerived = Eigen::Matrix<double, -1, 1>; Derived = Eigen::Matrix<double, -1, 1>; typename Eigen::ScalarBinaryOpTraits<typename Eigen::internal::traits<T>::Scalar, typename Eigen::internal::traits<OtherDerived>::Scalar>::ReturnType = double; typename Eigen::internal::traits<T>::Scalar = double; typename Eigen::internal::traits<OtherDerived>::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:199:0:   required from ‘int stan::optimization::BFGSMinimizer<FunctorType, QNUpdateType, Scalar, DimAtCompile>::step() [with FunctorType = stan::optimization::ModelAdaptor<model_shrinkage_namespace::model_shrinkage, false>; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0:   required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage; bool jacobian = false]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:15:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryView<Eigen::ArrayBase<Eigen::Map<Eigen::Array<stan::math::var_value<double>, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map<Eigen::Array<stan::math::var_value<double>, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryView<Eigen::ArrayBase<Eigen::Map<Eigen::Array<stan::math::var_value<double>, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map<Eigen::Array<stan::math::var_value<double>, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryView<Eigen::ArrayBase<Eigen::Map<Eigen::Array<stan::math::var_value<double>, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map<Eigen::Array<stan::math::var_value<double>, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 3>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryView<Eigen::ArrayBase<Eigen::Map<Eigen::Array<stan::math::var_value<double>, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map<Eigen::Array<stan::math::var_value<double>, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseUnaryView<Eigen::ArrayBase<Eigen::Map<Eigen::Array<stan::math::var_value<double>, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map<Eigen::Array<stan::math::var_value<double>, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:103:7:   required from ‘class Eigen::CwiseUnaryViewImpl<Eigen::ArrayBase<Eigen::Map<Eigen::Array<stan::math::var_value<double>, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::val_Op, Eigen::Map<Eigen::Array<stan::math::var_value<double>, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:58:7:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/accumulator.hpp:135:50:   required from ‘stan::math::var stan::math::accumulator<T, typename std::enable_if<stan::is_var<typename std::decay<_Tp>::type>::value, void>::type>::sum() const [with T = stan::math::var_value<double>; typename std::enable_if<stan::is_var<typename std::decay<_Tp>::type>::value, void>::type = void; typename std::decay<_Tp>::type = stan::math::var_value<double>; stan::math::var = stan::math::var_value<double>]’
stanExports_shrinkage.h:391:0:   required from ‘stan::scalar_type_t<T2> model_shrinkage_namespace::model_shrinkage::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector<stan::math::var_value<double>, std::allocator<stan::math::var_value<double> > >; VecI = std::vector<int>; stan::require_vector_like_t<VecR>* <anonymous> = 0; stan::require_vector_like_vt<std::is_integral, VecI>* <anonymous> = 0; stan::scalar_type_t<T2> = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
stanExports_shrinkage.h:884:0:   required from ‘T_ model_shrinkage_namespace::model_shrinkage::log_prob(std::vector<T_l>&, std::vector<int>&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0:   required from ‘double stan::model::log_prob_grad(const M&, std::vector<double>&, std::vector<int>&, std::vector<double>&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_shrinkage_namespace::model_shrinkage; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::grad_log_prob(SEXP, SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:23:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > >, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > >, 3>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37:   required from ‘class Eigen::TransposeImpl<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing<Src>::value), void*>::type) [with Dst = Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >; Src = Eigen::Block<const Eigen::Matrix<double, -1, -1>, 1, -1, false>; Func = assign_op<double, double>; typename enable_if<(! evaluator_assume_aliasing<Src>::value), void*>::type = void*; typename evaluator_traits<SrcXprType>::Shape = Eigen::DenseShape]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:18:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >; Src = Eigen::Block<const Eigen::Matrix<double, -1, -1>, 1, -1, false>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Assign.h:66:28:   required from ‘Derived& Eigen::MatrixBase<Derived>::operator=(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Block<const Eigen::Matrix<double, -1, -1>, 1, -1, false>; Derived = Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/standalone_gqs.hpp:72:0:   required from ‘int stan::services::standalone_generate(const Model&, const Eigen::MatrixXd&, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage; Eigen::MatrixXd = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1253:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::standalone_gqs(SEXP, SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:30:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 4, 4> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 4, 4> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 4, 4> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7:   required from ‘class Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 4, 4> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:347:30:   required from ‘Derived& Eigen::DenseBase<Derived>::setConstant(const Scalar&) [with Derived = Eigen::Matrix<double, 4, 4>; Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:548:10:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h:116:13:   required from ‘static void Eigen::internal::general_matrix_matrix_triangular_product<Index, LhsScalar, LhsStorageOrder, ConjugateLhs, RhsScalar, RhsStorageOrder, ConjugateRhs, 0, ResInnerStride, UpLo, Version>::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, Index, const ResScalar&, Eigen::internal::level3_blocking<LhsScalar, RhsScalar>&) [with Index = long int; LhsScalar = double; int LhsStorageOrder = 1; bool ConjugateLhs = false; RhsScalar = double; int RhsStorageOrder = 0; bool ConjugateRhs = false; int ResInnerStride = 1; int UpLo = 2; int Version = 0; ResScalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointProduct.h:113:12:   required from ‘static void Eigen::selfadjoint_product_selector<MatrixType, OtherType, UpLo, false>::run(MatrixType&, const OtherType&, const typename MatrixType::Scalar&) [with MatrixType = Eigen::Matrix<double, -1, -1>; OtherType = Eigen::Matrix<double, -1, -1, 1, -1, -1>; int UpLo = 2; typename MatrixType::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointProduct.h:126:62:   required from ‘Eigen::SelfAdjointView<MatrixType, UpLo>& Eigen::SelfAdjointView<MatrixType, Mode>::rankUpdate(const Eigen::MatrixBase<OtherDerived>&, const Scalar&) [with DerivedU = Eigen::Matrix<double, -1, -1, 1, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>; unsigned int UpLo = 2; Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:33:78:   required from ‘Eigen::Matrix<typename stan::value_type<T>::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0> >; stan::require_eigen_vt<std::is_arithmetic, T>* <anonymous> = 0; typename stan::value_type<T>::type = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20:   required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0>; stan::require_eigen_t<T_desired>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase<Derived>&) [with Derived = Eigen::CwiseUnaryOp<scalar_abs_op<double>, const Eigen::Matrix<double, -1, -1> >; Eigen::Index = long int]’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63:   required from ‘static Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::Scalar Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Matrix<double, -1, -1> >; Func = Eigen::internal::scalar_max_op<double, double, 0>; Evaluator = Eigen::internal::redux_evaluator<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Matrix<double, -1, -1> > >; Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56:   required from ‘typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_max_op<double, double, 0>; Derived = Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Matrix<double, -1, -1> >; typename Eigen::internal::traits<T>::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:448:25:   required from ‘typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::maxCoeff() const [with int NaNPropagation = 0; Derived = Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Matrix<double, -1, -1> >; typename Eigen::internal::traits<T>::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:466:37:   required from ‘typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::maxCoeff() const [with Derived = Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Matrix<double, -1, -1> >; typename Eigen::internal::traits<T>::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:453:45:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
  654 |   return internal::first_aligned<int(unpacket_traits<DefaultPacketType>::alignment),Derived>(m);
      |                                                                          ^~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, -1, 1, false>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, -1, 1, false>, 2>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, -1, 1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, -1, 1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, -1, 1, false>, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7:   required from ‘class Eigen::internal::BlockImpl_dense<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, -1, 1, false, true>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:363:59:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, CoeffVectorType&) [with MatrixType = Eigen::Matrix<double, -1, -1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:449:31:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   56 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, -1, 1, false>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, -1, 1, false>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, -1, 1, false>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, -1, 1, false>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, -1, 1, false>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Householder/Householder.h:93:22:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:363:59:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, CoeffVectorType&) [with MatrixType = Eigen::Matrix<double, -1, -1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:449:31:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:37:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:372:86:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, CoeffVectorType&) [with MatrixType = Eigen::Matrix<double, -1, -1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:449:31:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>, -1, 1, false>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>, -1, 1, false>, 2>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>, -1, 1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>, -1, 1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>, -1, 1, false>, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7:   required from ‘class Eigen::internal::BlockImpl_dense<const Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>, -1, 1, false, true>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:375:18:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, CoeffVectorType&) [with MatrixType = Eigen::Matrix<double, -1, -1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:449:31:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>, -1, 1, false> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>, -1, 1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>, -1, 1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>, -1, 1, false>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>, -1, 1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointRank2Update.h:34:74:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:375:18:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, CoeffVectorType&) [with MatrixType = Eigen::Matrix<double, -1, -1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:449:31:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, -1, 1, false> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, -1, 1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, -1, 1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, -1, 1, false>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, -1, 1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointRank2Update.h:35:60:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:375:18:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, CoeffVectorType&) [with MatrixType = Eigen::Matrix<double, -1, -1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:449:31:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>, -1, 1, false> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, -1, 1, false> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>, -1, 1, false> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, -1, 1, false> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>, -1, 1, false> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, -1, 1, false> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>, -1, 1, false> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, -1, 1, false> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>, -1, 1, false> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, -1, 1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointRank2Update.h:35:23:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:375:18:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, CoeffVectorType&) [with MatrixType = Eigen::Matrix<double, -1, -1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:449:31:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, Eigen::Matrix<double, -1, 1> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Solve.h:86:7:   required from ‘class Eigen::SolveImpl<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, Eigen::Matrix<double, -1, 1>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Solve.h:62:7:   required from ‘class Eigen::Solve<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, Eigen::Matrix<double, -1, 1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:53:0:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/run_adaptive_sampler.hpp:57:0:   required from ‘void stan::services::util::run_adaptive_sampler(Sampler&, Model&, std::vector<double>&, int, int, int, int, bool, RNG&, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, size_t, size_t) [with Sampler = stan::mcmc::adapt_dense_e_nuts<model_shrinkage_namespace::model_shrinkage, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> > >; Model = model_shrinkage_namespace::model_shrinkage; RNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; size_t = long unsigned int]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:97:0:   required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:150:0:   required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:638:0:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:15:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_exp_op<double>, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/variational/families/normal_meanfield.hpp:388:0:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/variational/advi.hpp:223:0:   required from ‘double stan::variational::advi<Model, Q, BaseRNG>::adapt_eta(Q&, int, stan::callbacks::logger&) const [with Model = model_shrinkage_namespace::model_shrinkage; Q = stan::variational::normal_meanfield; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/variational/advi.hpp:468:0:   required from ‘int stan::variational::advi<Model, Q, BaseRNG>::run(double, bool, int, double, int, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) const [with Model = model_shrinkage_namespace::model_shrinkage; Q = stan::variational::normal_meanfield; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/experimental/advi/meanfield.hpp:82:0:   required from ‘int stan::services::experimental::advi::meanfield(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, double, double, bool, int, int, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:900:0:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:15:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp: In instantiation of ‘void stan::math::elementwise_check(const F&, const char*, const char*, const T&, const char*, const Indexings& ...) [with F = check_not_nan<Eigen::Array<double, -1, 1> >(const char*, const char*, const Eigen::Array<double, -1, 1>&)::<lambda(double)>; T = Eigen::Array<double, -1, 1>; Indexings = {}; stan::require_eigen_t<T>* <anonymous> = 0; std::enable_if_t<((Eigen::internal::traits<_Rhs>::Flags & Eigen::LinearAccessBit) || T::IsVectorAtCompileTime)>* <anonymous> = 0]’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_not_nan.hpp:28:20:   required from ‘void stan::math::check_not_nan(const char*, const char*, const T_y&) [with T_y = Eigen::Array<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:62:16:   required from ‘stan::return_type_t<T, L, U> stan::math::normal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = true; T_y = Eigen::Matrix<var_value<double>, -1, 1>; T_loc = var_value<double>; T_scale = var_value<double>; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t<T_y, T_scale_succ, T_scale_fail>* <anonymous> = 0; stan::return_type_t<T, L, U> = var_value<double>]’
stanExports_shrinkage.h:328:0:   required from ‘stan::scalar_type_t<T2> model_shrinkage_namespace::model_shrinkage::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector<stan::math::var_value<double>, std::allocator<stan::math::var_value<double> > >; VecI = std::vector<int>; stan::require_vector_like_t<VecR>* <anonymous> = 0; stan::require_vector_like_vt<std::is_integral, VecI>* <anonymous> = 0; stan::scalar_type_t<T2> = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
stanExports_shrinkage.h:884:0:   required from ‘T_ model_shrinkage_namespace::model_shrinkage::log_prob(std::vector<T_l>&, std::vector<int>&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0:   required from ‘double stan::model::log_prob_grad(const M&, std::vector<double>&, std::vector<int>&, std::vector<double>&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_shrinkage_namespace::model_shrinkage; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::grad_log_prob(SEXP, SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:23:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:153:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase<Eigen::Array<double, -1, 1> >::Index’ {aka ‘long int’} [-Wsign-compare]
  153 |   for (size_t i = 0; i < x.size(); i++) {
      |                      ~~^~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > >, 2>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::ArrayWrapper<const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::ArrayWrapper<const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7:   required from ‘class Eigen::ArrayWrapper<const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/functor/operands_and_partials.hpp:67:0:   required from ‘void stan::math::internal::update_adjoints(Matrix1&, const Matrix2&, const stan::math::var&) [with Matrix1 = stan::math::arena_matrix<Eigen::Matrix<stan::math::var_value<double>, -1, 1> >; Matrix2 = stan::math::arena_matrix<Eigen::Matrix<double, -1, 1> >; stan::require_rev_matrix_t<T>* <anonymous> = 0; stan::require_st_arithmetic<Op>* <anonymous> = 0; stan::math::var = stan::math::var_value<double>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:91:0:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:105:28:   required from ‘stan::return_type_t<T, L, U> stan::math::normal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = true; T_y = Eigen::Matrix<var_value<double>, -1, 1>; T_loc = var_value<double>; T_scale = var_value<double>; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t<T_y, T_scale_succ, T_scale_fail>* <anonymous> = 0; stan::return_type_t<T, L, U> = var_value<double>]’
stanExports_shrinkage.h:328:0:   required from ‘stan::scalar_type_t<T2> model_shrinkage_namespace::model_shrinkage::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector<stan::math::var_value<double>, std::allocator<stan::math::var_value<double> > >; VecI = std::vector<int>; stan::require_vector_like_t<VecR>* <anonymous> = 0; stan::require_vector_like_vt<std::is_integral, VecI>* <anonymous> = 0; stan::scalar_type_t<T2> = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
stanExports_shrinkage.h:884:0:   required from ‘T_ model_shrinkage_namespace::model_shrinkage::log_prob(std::vector<T_l>&, std::vector<int>&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0:   required from ‘double stan::model::log_prob_grad(const M&, std::vector<double>&, std::vector<int>&, std::vector<double>&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_shrinkage_namespace::model_shrinkage; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::grad_log_prob(SEXP, SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:23:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   56 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/functor/operands_and_partials.hpp:67:0:   required from ‘void stan::math::internal::update_adjoints(Matrix1&, const Matrix2&, const stan::math::var&) [with Matrix1 = stan::math::arena_matrix<Eigen::Matrix<stan::math::var_value<double>, -1, 1> >; Matrix2 = stan::math::arena_matrix<Eigen::Matrix<double, -1, 1> >; stan::require_rev_matrix_t<T>* <anonymous> = 0; stan::require_st_arithmetic<Op>* <anonymous> = 0; stan::math::var = stan::math::var_value<double>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/functor/partials_propagator.hpp:91:0:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:105:28:   required from ‘stan::return_type_t<T, L, U> stan::math::normal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = true; T_y = Eigen::Matrix<var_value<double>, -1, 1>; T_loc = var_value<double>; T_scale = var_value<double>; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t<T_y, T_scale_succ, T_scale_fail>* <anonymous> = 0; stan::return_type_t<T, L, U> = var_value<double>]’
stanExports_shrinkage.h:328:0:   required from ‘stan::scalar_type_t<T2> model_shrinkage_namespace::model_shrinkage::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector<stan::math::var_value<double>, std::allocator<stan::math::var_value<double> > >; VecI = std::vector<int>; stan::require_vector_like_t<VecR>* <anonymous> = 0; stan::require_vector_like_vt<std::is_integral, VecI>* <anonymous> = 0; stan::scalar_type_t<T2> = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
stanExports_shrinkage.h:884:0:   required from ‘T_ model_shrinkage_namespace::model_shrinkage::log_prob(std::vector<T_l>&, std::vector<int>&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0:   required from ‘double stan::model::log_prob_grad(const M&, std::vector<double>&, std::vector<int>&, std::vector<double>&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_shrinkage_namespace::model_shrinkage; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::grad_log_prob(SEXP, SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:23:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator<Eigen::Block<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Matrix<double, -1, -1> >, 1, -1, false> >’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7:   required from ‘class Eigen::internal::redux_evaluator<Eigen::Block<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Matrix<double, -1, -1> >, 1, -1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:414:17:   required from ‘typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::Block<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Matrix<double, -1, -1> >, 1, -1, false>; typename Eigen::internal::traits<T>::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25:   required from ‘typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::sum() const [with Derived = Eigen::Block<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Matrix<double, -1, -1> >, 1, -1, false>; typename Eigen::internal::traits<T>::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/VectorwiseOp.h:114:1:   required from ‘ResultType Eigen::internal::member_sum<ResultType, Scalar>::operator()(const XprType&) const [with XprType = Eigen::Block<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Matrix<double, -1, -1> >, 1, -1, false>; ResultType = double; Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PartialReduxEvaluator.h:183:21:   required from ‘const Eigen::internal::evaluator<Eigen::PartialReduxExpr<MatrixType, MemberOp, Direction> >::Scalar Eigen::internal::evaluator<Eigen::PartialReduxExpr<MatrixType, MemberOp, Direction> >::coeff(Eigen::Index) const [with ArgType = const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Matrix<double, -1, -1> >; MemberOp = Eigen::internal::member_sum<double, double>; int Direction = 1; Scalar = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:268:34:   required from ‘static Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::Scalar Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::PartialReduxExpr<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Matrix<double, -1, -1> >, Eigen::internal::member_sum<double, double>, 1>; Func = Eigen::internal::scalar_max_op<double, double, 0>; Evaluator = Eigen::internal::redux_evaluator<Eigen::PartialReduxExpr<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Matrix<double, -1, -1> >, Eigen::internal::member_sum<double, double>, 1> >; Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56:   required from ‘typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_max_op<double, double, 0>; Derived = Eigen::PartialReduxExpr<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Matrix<double, -1, -1> >, Eigen::internal::member_sum<double, double>, 1>; typename Eigen::internal::traits<T>::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:448:25:   required from ‘typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::maxCoeff() const [with int NaNPropagation = 0; Derived = Eigen::PartialReduxExpr<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Matrix<double, -1, -1> >, Eigen::internal::member_sum<double, double>, 1>; typename Eigen::internal::traits<T>::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:466:37:   required from ‘typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::maxCoeff() const [with Derived = Eigen::PartialReduxExpr<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Matrix<double, -1, -1> >, Eigen::internal::member_sum<double, double>, 1>; typename Eigen::internal::traits<T>::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/matrix_exp_action_handler.hpp:106:49:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
 1071 |     PacketAlignment = unpacket_traits<PacketScalar>::alignment,
      |                                                      ^~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Product<Eigen::Matrix<double, -1, -1, 1, -1, -1>, const Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, -1, 1, true>, 0>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Product<Eigen::Matrix<double, -1, -1, 1, -1, -1>, const Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, -1, 1, true>, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Product<Eigen::Matrix<double, -1, -1, 1, -1, -1>, const Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, -1, 1, true>, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7:   required from ‘class Eigen::internal::dense_product_base<Eigen::Matrix<double, -1, -1, 1, -1, -1>, const Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, -1, 1, true>, 0, 7>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7:   required from ‘class Eigen::ProductImpl<Eigen::Matrix<double, -1, -1, 1, -1, -1>, const Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, -1, 1, true>, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product<Eigen::Matrix<double, -1, -1, 1, -1, -1>, const Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, -1, 1, true>, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:345:45:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41:   required from ‘Derived& Eigen::PlainObjectBase<Derived>::_set_noalias(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Matrix<double, -1, -1, 1, -1, -1>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 0>; Derived = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19:   required from ‘Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Matrix<double, -1, -1, 1, -1, -1>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 0>; Derived = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Matrix<double, -1, -1, 1, -1, -1>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:29:18:   required from ‘Eigen::Matrix<typename stan::value_type<T>::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0> >; stan::require_eigen_vt<std::is_arithmetic, T>* <anonymous> = 0; typename stan::value_type<T>::type = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20:   required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0>; stan::require_eigen_t<T_desired>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   56 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, -1, 1, true>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, -1, 1, true>, 2>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, -1, 1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, -1, 1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, -1, 1, true>, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7:   required from ‘class Eigen::internal::BlockImpl_dense<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, -1, 1, true, true>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41:   required from ‘Derived& Eigen::PlainObjectBase<Derived>::_set_noalias(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Matrix<double, -1, -1, 1, -1, -1>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 0>; Derived = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19:   required from ‘Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Matrix<double, -1, -1, 1, -1, -1>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 0>; Derived = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Matrix<double, -1, -1, 1, -1, -1>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:29:18:   required from ‘Eigen::Matrix<typename stan::value_type<T>::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0> >; stan::require_eigen_vt<std::is_arithmetic, T>* <anonymous> = 0; typename stan::value_type<T>::type = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20:   required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0>; stan::require_eigen_t<T_desired>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator<Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, -1, 1, true> >’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8:   required from ‘struct Eigen::internal::evaluator<const Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, -1, 1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:372:102:   required from ‘struct Eigen::internal::plain_object_eval<const Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, -1, 1, true>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:370:45:   required from ‘struct Eigen::internal::generic_product_impl<Eigen::Matrix<double, -1, -1, 1, -1, -1>, const Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, -1, 1, true>, Eigen::DenseShape, Eigen::DenseShape, 7>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:479:24:   required from ‘static void Eigen::internal::generic_product_impl<Lhs, Rhs, Eigen::DenseShape, Eigen::DenseShape, 8>::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Matrix<double, -1, -1>; Lhs = Eigen::Matrix<double, -1, -1, 1, -1, -1>; Rhs = Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >; Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:445:20:   required from ‘static void Eigen::internal::generic_product_impl<Lhs, Rhs, Eigen::DenseShape, Eigen::DenseShape, 8>::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix<double, -1, -1>; Lhs = Eigen::Matrix<double, -1, -1, 1, -1, -1>; Rhs = Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41:   required from ‘Derived& Eigen::PlainObjectBase<Derived>::_set_noalias(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Matrix<double, -1, -1, 1, -1, -1>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 0>; Derived = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19:   required from ‘Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Matrix<double, -1, -1, 1, -1, -1>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 0>; Derived = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Matrix<double, -1, -1, 1, -1, -1>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:29:18:   required from ‘Eigen::Matrix<typename stan::value_type<T>::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0> >; stan::require_eigen_vt<std::is_arithmetic, T>* <anonymous> = 0; typename stan::value_type<T>::type = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20:   required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0>; stan::require_eigen_t<T_desired>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
 1071 |     PacketAlignment = unpacket_traits<PacketScalar>::alignment,
      |                                                      ^~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Product<const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 0>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Product<const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Product<const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7:   required from ‘class Eigen::internal::dense_product_base<const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 0, 7>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7:   required from ‘class Eigen::ProductImpl<const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product<const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:345:45:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41:   required from ‘Derived& Eigen::PlainObjectBase<Derived>::_set_noalias(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Matrix<double, -1, -1, 1, -1, -1>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 0>; Derived = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19:   required from ‘Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Matrix<double, -1, -1, 1, -1, -1>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 0>; Derived = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Matrix<double, -1, -1, 1, -1, -1>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:29:18:   required from ‘Eigen::Matrix<typename stan::value_type<T>::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0> >; stan::require_eigen_vt<std::is_arithmetic, T>* <anonymous> = 0; typename stan::value_type<T>::type = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20:   required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0>; stan::require_eigen_t<T_desired>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   56 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 2>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7:   required from ‘class Eigen::internal::BlockImpl_dense<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true, true>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41:   required from ‘Derived& Eigen::PlainObjectBase<Derived>::_set_noalias(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Matrix<double, -1, -1, 1, -1, -1>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 0>; Derived = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19:   required from ‘Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Matrix<double, -1, -1, 1, -1, -1>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 0>; Derived = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Matrix<double, -1, -1, 1, -1, -1>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:29:18:   required from ‘Eigen::Matrix<typename stan::value_type<T>::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0> >; stan::require_eigen_vt<std::is_arithmetic, T>* <anonymous> = 0; typename stan::value_type<T>::type = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20:   required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0>; stan::require_eigen_t<T_desired>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator<Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true> >’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8:   required from ‘struct Eigen::internal::evaluator<const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:372:102:   required from ‘struct Eigen::internal::plain_object_eval<const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:369:45:   required from ‘struct Eigen::internal::generic_product_impl<const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, Eigen::DenseShape, Eigen::DenseShape, 7>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:486:24:   required from ‘static void Eigen::internal::generic_product_impl<Lhs, Rhs, Eigen::DenseShape, Eigen::DenseShape, 8>::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Matrix<double, -1, -1>; Lhs = Eigen::Matrix<double, -1, -1, 1, -1, -1>; Rhs = Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >; Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:445:20:   required from ‘static void Eigen::internal::generic_product_impl<Lhs, Rhs, Eigen::DenseShape, Eigen::DenseShape, 8>::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix<double, -1, -1>; Lhs = Eigen::Matrix<double, -1, -1, 1, -1, -1>; Rhs = Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41:   required from ‘Derived& Eigen::PlainObjectBase<Derived>::_set_noalias(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Matrix<double, -1, -1, 1, -1, -1>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 0>; Derived = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19:   required from ‘Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Matrix<double, -1, -1, 1, -1, -1>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 0>; Derived = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Matrix<double, -1, -1, 1, -1, -1>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:29:18:   required from ‘Eigen::Matrix<typename stan::value_type<T>::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0> >; stan::require_eigen_vt<std::is_arithmetic, T>* <anonymous> = 0; typename stan::value_type<T>::type = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20:   required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0>; stan::require_eigen_t<T_desired>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
 1071 |     PacketAlignment = unpacket_traits<PacketScalar>::alignment,
      |                                                      ^~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, -1, 1, false> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, -1, 1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, -1, 1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_abs2_op<double>, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, -1, 1, false>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, -1, 1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:98:40:   required from ‘typename Eigen::NumTraits<typename Eigen::internal::traits<T>::Scalar>::Real Eigen::MatrixBase<Derived>::squaredNorm() const [with Derived = Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, -1, 1, false>; typename Eigen::NumTraits<typename Eigen::internal::traits<T>::Scalar>::Real = double; typename Eigen::internal::traits<T>::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Householder/Householder.h:78:71:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:363:59:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, CoeffVectorType&) [with MatrixType = Eigen::Matrix<double, -1, -1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:449:31:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   56 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, 1, -1, true>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, 1, -1, true>, 2>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Block<const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, 1, -1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Block<const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, 1, -1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Block<const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, 1, -1, true>, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7:   required from ‘class Eigen::internal::BlockImpl_dense<const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, 1, -1, true, true>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43:   required from ‘static void Eigen::internal::Assignment<DstXprType, Eigen::Product<Lhs, Rhs, Options>, Eigen::internal::assign_op<Scalar, Scalar>, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op<Scalar, Scalar>&) [with DstXprType = Eigen::Matrix<double, -1, 1>; Lhs = Eigen::Transpose<Eigen::Matrix<double, -1, -1> >; Rhs = Eigen::Matrix<double, -1, 1>; int Options = 0; Scalar = double; SrcXprType = Eigen::Product<Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, Eigen::Matrix<double, -1, 1>, 0>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix<double, -1, 1>; Src = Eigen::Product<Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, Eigen::Matrix<double, -1, 1>, 0>; Func = assign_op<double, double>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41:   required from ‘Derived& Eigen::PlainObjectBase<Derived>::_set_noalias(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, Eigen::Matrix<double, -1, 1>, 0>; Derived = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19:   required from ‘Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, Eigen::Matrix<double, -1, 1>, 0>; Derived = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, Eigen::Matrix<double, -1, 1>, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:22:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Matrix<double, -1, 1>, -1, 1, true>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Matrix<double, -1, 1>, -1, 1, true>, 2>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Block<const Eigen::Matrix<double, -1, 1>, -1, 1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Block<const Eigen::Matrix<double, -1, 1>, -1, 1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Block<const Eigen::Matrix<double, -1, 1>, -1, 1, true>, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7:   required from ‘class Eigen::internal::BlockImpl_dense<const Eigen::Matrix<double, -1, 1>, -1, 1, true, true>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43:   required from ‘static void Eigen::internal::Assignment<DstXprType, Eigen::Product<Lhs, Rhs, Options>, Eigen::internal::assign_op<Scalar, Scalar>, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op<Scalar, Scalar>&) [with DstXprType = Eigen::Matrix<double, -1, 1>; Lhs = Eigen::Transpose<Eigen::Matrix<double, -1, -1> >; Rhs = Eigen::Matrix<double, -1, 1>; int Options = 0; Scalar = double; SrcXprType = Eigen::Product<Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, Eigen::Matrix<double, -1, 1>, 0>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix<double, -1, 1>; Src = Eigen::Product<Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, Eigen::Matrix<double, -1, 1>, 0>; Func = assign_op<double, double>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41:   required from ‘Derived& Eigen::PlainObjectBase<Derived>::_set_noalias(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, Eigen::Matrix<double, -1, 1>, 0>; Derived = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19:   required from ‘Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, Eigen::Matrix<double, -1, 1>, 0>; Derived = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, Eigen::Matrix<double, -1, 1>, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:22:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator<Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false> >’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1043:41:   required from ‘struct Eigen::internal::evaluator<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>, 1, -1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8:   required from ‘struct Eigen::internal::evaluator<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>, 1, -1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:564:45:   required from ‘struct Eigen::internal::unary_evaluator<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>, 1, -1, false> >, Eigen::internal::IndexBased, double>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8:   required from ‘struct Eigen::internal::evaluator<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>, 1, -1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7:   required from ‘class Eigen::internal::redux_evaluator<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>, 1, -1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:414:17:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:269:52:   required from ‘typename Eigen::NumTraits<typename Eigen::internal::traits<T>::Scalar>::Real Eigen::MatrixBase<Derived>::lpNorm() const [with int p = 1; Derived = Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>, 1, -1, false>; typename Eigen::NumTraits<typename Eigen::internal::traits<T>::Scalar>::Real = double; typename Eigen::internal::traits<T>::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:514:125:   required from ‘Eigen::LDLT<_MatrixType, _UpLo>& Eigen::LDLT<MatrixType, UpLo>::compute(const Eigen::EigenBase<OtherDerived>&) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>; int _UpLo = 1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:120:14:   required from ‘Eigen::LDLT<MatrixType, UpLo>::LDLT(const Eigen::EigenBase<OtherDerived>&) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>; int _UpLo = 1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:683:10:   required from ‘const Eigen::LDLT<typename Eigen::DenseBase<Derived>::PlainObject> Eigen::MatrixBase<Derived>::ldlt() const [with Derived = Eigen::Matrix<double, -1, -1>; typename Eigen::DenseBase<Derived>::PlainObject = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:45:67:   required from ‘void stan::math::check_pos_definite(const char*, const char*, const EigMat&) [with EigMat = Eigen::Matrix<double, -1, -1>; stan::require_matrix_t<T>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:21:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
 1071 |     PacketAlignment = unpacket_traits<PacketScalar>::alignment,
      |                                                      ^~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>, 1, -1, false> >’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8:   required from ‘struct Eigen::internal::evaluator<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>, 1, -1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:564:45:   required from ‘struct Eigen::internal::unary_evaluator<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>, 1, -1, false> >, Eigen::internal::IndexBased, double>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8:   required from ‘struct Eigen::internal::evaluator<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>, 1, -1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7:   required from ‘class Eigen::internal::redux_evaluator<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>, 1, -1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:414:17:   required from ‘typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>, 1, -1, false> >; typename Eigen::internal::traits<T>::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:269:52:   required from ‘typename Eigen::NumTraits<typename Eigen::internal::traits<T>::Scalar>::Real Eigen::MatrixBase<Derived>::lpNorm() const [with int p = 1; Derived = Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>, 1, -1, false>; typename Eigen::NumTraits<typename Eigen::internal::traits<T>::Scalar>::Real = double; typename Eigen::internal::traits<T>::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:514:125:   required from ‘Eigen::LDLT<_MatrixType, _UpLo>& Eigen::LDLT<MatrixType, UpLo>::compute(const Eigen::EigenBase<OtherDerived>&) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>; int _UpLo = 1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:120:14:   required from ‘Eigen::LDLT<MatrixType, UpLo>::LDLT(const Eigen::EigenBase<OtherDerived>&) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>; int _UpLo = 1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:683:10:   required from ‘const Eigen::LDLT<typename Eigen::DenseBase<Derived>::PlainObject> Eigen::MatrixBase<Derived>::ldlt() const [with Derived = Eigen::Matrix<double, -1, -1>; typename Eigen::DenseBase<Derived>::PlainObject = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:45:67:   required from ‘void stan::math::check_pos_definite(const char*, const char*, const EigMat&) [with EigMat = Eigen::Matrix<double, -1, -1>; stan::require_matrix_t<T>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:21:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator<Eigen::Block<Eigen::Diagonal<Eigen::Matrix<double, -1, -1>, 0>, -1, 1, false> >’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8:   required from ‘struct Eigen::internal::evaluator<const Eigen::Block<Eigen::Diagonal<Eigen::Matrix<double, -1, -1>, 0>, -1, 1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:564:45:   required from ‘struct Eigen::internal::unary_evaluator<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Block<Eigen::Diagonal<Eigen::Matrix<double, -1, -1>, 0>, -1, 1, false> >, Eigen::internal::IndexBased, double>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8:   required from ‘struct Eigen::internal::evaluator<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Block<Eigen::Diagonal<Eigen::Matrix<double, -1, -1>, 0>, -1, 1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Visitor.h:79:51:   required from ‘class Eigen::internal::visitor_evaluator<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Block<Eigen::Diagonal<Eigen::Matrix<double, -1, -1>, 0>, -1, 1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Visitor.h:123:17:   required from ‘void Eigen::DenseBase<Derived>::visit(Visitor&) const [with Visitor = Eigen::internal::max_coeff_visitor<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Block<Eigen::Diagonal<Eigen::Matrix<double, -1, -1>, 0>, -1, 1, false> >, 0>; Derived = Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Block<Eigen::Diagonal<Eigen::Matrix<double, -1, -1>, 0>, -1, 1, false> >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Visitor.h:374:14:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:325:54:   required from ‘static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix<double, -1, -1>; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:526:51:   required from ‘Eigen::LDLT<_MatrixType, _UpLo>& Eigen::LDLT<MatrixType, UpLo>::compute(const Eigen::EigenBase<OtherDerived>&) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>; int _UpLo = 1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:120:14:   required from ‘Eigen::LDLT<MatrixType, UpLo>::LDLT(const Eigen::EigenBase<OtherDerived>&) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>; int _UpLo = 1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:683:10:   required from ‘const Eigen::LDLT<typename Eigen::DenseBase<Derived>::PlainObject> Eigen::MatrixBase<Derived>::ldlt() const [with Derived = Eigen::Matrix<double, -1, -1>; typename Eigen::DenseBase<Derived>::PlainObject = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:45:67:   required from ‘void stan::math::check_pos_definite(const char*, const char*, const EigMat&) [with EigMat = Eigen::Matrix<double, -1, -1>; stan::require_matrix_t<T>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:21:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:372:102:   required from ‘struct Eigen::internal::plain_object_eval<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:369:45:   required from ‘struct Eigen::internal::generic_product_impl<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>, Eigen::DenseShape, Eigen::DenseShape, 7>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:178:42:   required from ‘static void Eigen::internal::Assignment<DstXprType, Eigen::Product<Lhs, Rhs, Options>, Eigen::internal::sub_assign_op<Scalar, Scalar>, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::sub_assign_op<Scalar, Scalar>&) [with DstXprType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, false>; Lhs = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Rhs = Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>; int Options = 0; Scalar = double; SrcXprType = Eigen::Product<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>, 0>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, false>; Src = Eigen::Product<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>, 0>; Func = sub_assign_op<double, double>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/NoAlias.h:59:31:   required from ‘ExpressionType& Eigen::NoAlias<ExpressionType, StorageBase>::operator-=(const StorageBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>, 0>; ExpressionType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, false>; StorageBase = Eigen::MatrixBase]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:361:25:   required from ‘static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix<double, -1, -1>; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:526:51:   required from ‘Eigen::LDLT<_MatrixType, _UpLo>& Eigen::LDLT<MatrixType, UpLo>::compute(const Eigen::EigenBase<OtherDerived>&) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>; int _UpLo = 1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:120:14:   required from ‘Eigen::LDLT<MatrixType, UpLo>::LDLT(const Eigen::EigenBase<OtherDerived>&) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>; int _UpLo = 1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:683:10:   required from ‘const Eigen::LDLT<typename Eigen::DenseBase<Derived>::PlainObject> Eigen::MatrixBase<Derived>::ldlt() const [with Derived = Eigen::Matrix<double, -1, -1>; typename Eigen::DenseBase<Derived>::PlainObject = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:45:67:   required from ‘void stan::math::check_pos_definite(const char*, const char*, const EigMat&) [with EigMat = Eigen::Matrix<double, -1, -1>; stan::require_matrix_t<T>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:21:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp: In instantiation of ‘void stan::math::elementwise_check(const F&, const char*, const char*, const T&, const char*, const Indexings& ...) [with F = check_not_nan<Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > >(const char*, const char*, const Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >&)::<lambda(double)>; T = Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >; Indexings = {}; stan::require_eigen_t<T>* <anonymous> = 0; std::enable_if_t<((Eigen::internal::traits<_Rhs>::Flags & Eigen::LinearAccessBit) || T::IsVectorAtCompileTime)>* <anonymous> = 0]’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_not_nan.hpp:28:20:   required from ‘void stan::math::check_not_nan(const char*, const char*, const T_y&) [with T_y = Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:62:16:   required from ‘stan::return_type_t<T, L, U> stan::math::normal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = false; T_y = Eigen::Matrix<double, -1, 1>; T_loc = double; T_scale = double; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t<T_y, T_scale_succ, T_scale_fail>* <anonymous> = 0; stan::return_type_t<T, L, U> = double]’
stanExports_shrinkage.h:328:0:   required from ‘stan::scalar_type_t<T2> model_shrinkage_namespace::model_shrinkage::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector<double>; VecI = std::vector<int>; stan::require_vector_like_t<VecR>* <anonymous> = 0; stan::require_vector_like_vt<std::is_integral, VecI>* <anonymous> = 0; stan::scalar_type_t<T2> = double; std::ostream = std::basic_ostream<char>]’
stanExports_shrinkage.h:884:0:   required from ‘T_ model_shrinkage_namespace::model_shrinkage::log_prob(std::vector<T_l>&, std::vector<int>&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0:   required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage; bool jacobian = false]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:15:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:153:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase<Eigen::ArrayWrapper<const Eigen::Matrix<double, -1, 1> > >::Index’ {aka ‘long int’} [-Wsign-compare]
  153 |   for (size_t i = 0; i < x.size(); i++) {
      |                      ~~^~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator<Eigen::Block<const Eigen::Matrix<double, -1, -1>, 1, -1, false> >’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:774:20:   required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > >; SrcXprType = Eigen::Block<const Eigen::Matrix<double, -1, -1>, 1, -1, false>; Functor = assign_op<double, double>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31:   required from ‘static void Eigen::internal::Assignment<DstXprType, SrcXprType, Functor, Eigen::internal::Dense2Dense, Weak>::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > >; SrcXprType = Eigen::Block<const Eigen::Matrix<double, -1, -1>, 1, -1, false>; Functor = Eigen::internal::assign_op<double, double>; Weak = void]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >; Src = Eigen::Block<const Eigen::Matrix<double, -1, -1>, 1, -1, false>; Func = assign_op<double, double>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing<Src>::value), void*>::type) [with Dst = Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >; Src = Eigen::Block<const Eigen::Matrix<double, -1, -1>, 1, -1, false>; Func = assign_op<double, double>; typename enable_if<(! evaluator_assume_aliasing<Src>::value), void*>::type = void*; typename evaluator_traits<SrcXprType>::Shape = Eigen::DenseShape]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:18:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >; Src = Eigen::Block<const Eigen::Matrix<double, -1, -1>, 1, -1, false>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Assign.h:66:28:   required from ‘Derived& Eigen::MatrixBase<Derived>::operator=(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Block<const Eigen::Matrix<double, -1, -1>, 1, -1, false>; Derived = Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/standalone_gqs.hpp:72:0:   required from ‘int stan::services::standalone_generate(const Model&, const Eigen::MatrixXd&, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage; Eigen::MatrixXd = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1253:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::standalone_gqs(SEXP, SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:30:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
 1071 |     PacketAlignment = unpacket_traits<PacketScalar>::alignment,
      |                                                      ^~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Matrix<double, -1, 1>, 16, Eigen::Stride<0, 0> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Matrix<double, -1, 1>, 16, Eigen::Stride<0, 0> >, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Matrix<double, -1, 1>, 16, Eigen::Stride<0, 0> >, 3>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Map<Eigen::Matrix<double, -1, 1>, 16, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<double, -1, 1>, 16, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Map<Eigen::Matrix<double, -1, 1>, 16, Eigen::Stride<0, 0> >, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41:   required from ‘Derived& Eigen::PlainObjectBase<Derived>::_set_noalias(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> >, Eigen::Transpose<Eigen::Matrix<double, -1, 1> >, 0>; Derived = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:883:25:   required from ‘void Eigen::PlainObjectBase<Derived>::_init1(const Eigen::DenseBase<ElseDerived>&) [with T = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> >, Eigen::Transpose<Eigen::Matrix<double, -1, 1> >, 0>; OtherDerived = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> >, Eigen::Transpose<Eigen::Matrix<double, -1, 1> >, 0>; Derived = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:332:31:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const T&) [with T = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> >, Eigen::Transpose<Eigen::Matrix<double, -1, 1> >, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:850:41:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<evaluator_assume_aliasing<Src>::value, void*>::type) [with Dst = Eigen::Matrix<double, -1, -1>; Src = Eigen::Product<Eigen::CwiseBinaryOp<scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> >, Eigen::Transpose<Eigen::Matrix<double, -1, 1> >, 0>; Func = add_assign_op<double, double>; typename enable_if<evaluator_assume_aliasing<Src>::value, void*>::type = void*; typename evaluator_traits<SrcXprType>::Shape = Eigen::DenseShape]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:177:18:   required from ‘Derived& Eigen::MatrixBase<Derived>::operator+=(const Eigen::MatrixBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> >, Eigen::Transpose<Eigen::Matrix<double, -1, 1> >, 0>; Derived = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/welford_covar_estimator.hpp:28:39:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   56 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 16, Eigen::Stride<0, 0> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 16, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 16, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 16, Eigen::Stride<0, 0> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 16, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:280:48:   required from ‘void Eigen::internal::outer_product_selector_run(Dst&, const Lhs&, const Rhs&, const Func&, const false_type&) [with Dst = Eigen::Matrix<double, -1, -1>; Lhs = Eigen::CwiseBinaryOp<scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> >; Rhs = Eigen::Transpose<Eigen::Matrix<double, -1, 1> >; Func = generic_product_impl<Eigen::CwiseBinaryOp<scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> >, Eigen::Transpose<Eigen::Matrix<double, -1, 1> >, Eigen::DenseShape, Eigen::DenseShape, 5>::set]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:317:41:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41:   required from ‘Derived& Eigen::PlainObjectBase<Derived>::_set_noalias(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> >, Eigen::Transpose<Eigen::Matrix<double, -1, 1> >, 0>; Derived = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:883:25:   required from ‘void Eigen::PlainObjectBase<Derived>::_init1(const Eigen::DenseBase<ElseDerived>&) [with T = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> >, Eigen::Transpose<Eigen::Matrix<double, -1, 1> >, 0>; OtherDerived = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> >, Eigen::Transpose<Eigen::Matrix<double, -1, 1> >, 0>; Derived = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:332:31:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const T&) [with T = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> >, Eigen::Transpose<Eigen::Matrix<double, -1, 1> >, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:850:41:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<evaluator_assume_aliasing<Src>::value, void*>::type) [with Dst = Eigen::Matrix<double, -1, -1>; Src = Eigen::Product<Eigen::CwiseBinaryOp<scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> >, Eigen::Transpose<Eigen::Matrix<double, -1, 1> >, 0>; Func = add_assign_op<double, double>; typename enable_if<evaluator_assume_aliasing<Src>::value, void*>::type = void*; typename evaluator_traits<SrcXprType>::Shape = Eigen::DenseShape]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:177:18:   required from ‘Derived& Eigen::MatrixBase<Derived>::operator+=(const Eigen::MatrixBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> >, Eigen::Transpose<Eigen::Matrix<double, -1, 1> >, 0>; Derived = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/welford_covar_estimator.hpp:28:39:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Product<Eigen::Matrix<double, -1, -1, 1, -1, -1>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 1>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Product<Eigen::Matrix<double, -1, -1, 1, -1, -1>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Product<Eigen::Matrix<double, -1, -1, 1, -1, -1>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7:   required from ‘class Eigen::internal::dense_product_base<Eigen::Matrix<double, -1, -1, 1, -1, -1>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 1, 8>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7:   required from ‘class Eigen::ProductImpl<Eigen::Matrix<double, -1, -1, 1, -1, -1>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 1, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product<Eigen::Matrix<double, -1, -1, 1, -1, -1>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:462:68:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41:   required from ‘Derived& Eigen::PlainObjectBase<Derived>::_set_noalias(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Matrix<double, -1, -1, 1, -1, -1>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 0>; Derived = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19:   required from ‘Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Matrix<double, -1, -1, 1, -1, -1>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 0>; Derived = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Matrix<double, -1, -1, 1, -1, -1>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:29:18:   required from ‘Eigen::Matrix<typename stan::value_type<T>::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0> >; stan::require_eigen_vt<std::is_arithmetic, T>* <anonymous> = 0; typename stan::value_type<T>::type = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20:   required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0>; stan::require_eigen_t<T_desired>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, -1, 1, true>, -1, 1, true>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, -1, 1, true>, -1, 1, true>, 2>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Block<const Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, -1, 1, true>, -1, 1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Block<const Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, -1, 1, true>, -1, 1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Block<const Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, -1, 1, true>, -1, 1, true>, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7:   required from ‘class Eigen::internal::BlockImpl_dense<const Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, -1, 1, true>, -1, 1, true, true>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41:   required from ‘Derived& Eigen::PlainObjectBase<Derived>::_set_noalias(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Matrix<double, -1, -1, 1, -1, -1>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 0>; Derived = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19:   required from ‘Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Matrix<double, -1, -1, 1, -1, -1>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 0>; Derived = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Matrix<double, -1, -1, 1, -1, -1>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:29:18:   required from ‘Eigen::Matrix<typename stan::value_type<T>::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0> >; stan::require_eigen_vt<std::is_arithmetic, T>* <anonymous> = 0; typename stan::value_type<T>::type = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20:   required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0>; stan::require_eigen_t<T_desired>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, true>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, true>, 2>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Block<const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Block<const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Block<const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, true>, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7:   required from ‘class Eigen::internal::BlockImpl_dense<const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, true, true>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41:   required from ‘Derived& Eigen::PlainObjectBase<Derived>::_set_noalias(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Matrix<double, -1, -1, 1, -1, -1>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 0>; Derived = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19:   required from ‘Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Matrix<double, -1, -1, 1, -1, -1>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 0>; Derived = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Matrix<double, -1, -1, 1, -1, -1>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:29:18:   required from ‘Eigen::Matrix<typename stan::value_type<T>::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0> >; stan::require_eigen_vt<std::is_arithmetic, T>* <anonymous> = 0; typename stan::value_type<T>::type = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20:   required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0>; stan::require_eigen_t<T_desired>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
In file included from /home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/Core:333:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h: In instantiation of ‘class Eigen::internal::gemv_traits<double, double, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:306:38:   required from ‘struct Eigen::internal::general_matrix_vector_product<long int, double, Eigen::internal::const_blas_data_mapper<double, long int, 1>, 1, false, double, Eigen::internal::const_blas_data_mapper<double, long int, 0>, false, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:347:132:   required from ‘static void Eigen::internal::gemv_dense_selector<2, 1, true>::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose<Eigen::Matrix<double, -1, -1> >; Rhs = Eigen::Matrix<double, -1, 1>; Dest = Eigen::Matrix<double, -1, 1>; typename Dest::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:388:34:   required from ‘static void Eigen::internal::generic_product_impl<Lhs, Rhs, Eigen::DenseShape, Eigen::DenseShape, 7>::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Matrix<double, -1, 1>; Lhs = Eigen::Transpose<Eigen::Matrix<double, -1, -1> >; Rhs = Eigen::Matrix<double, -1, 1>; Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361:27:   required from ‘static void Eigen::internal::generic_product_impl_base<Lhs, Rhs, Derived>::scaleAndAddTo(Dst&, const Lhs&, const Rhs&, const Scalar&) [with Dst = Eigen::Matrix<double, -1, 1>; Lhs = Eigen::Transpose<Eigen::Matrix<double, -1, -1> >; Rhs = Eigen::Matrix<double, -1, 1>; Derived = Eigen::internal::generic_product_impl<Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, Eigen::Matrix<double, -1, 1>, Eigen::DenseShape, Eigen::DenseShape, 7>; Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349:33:   required from ‘static void Eigen::internal::generic_product_impl_base<Lhs, Rhs, Derived>::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix<double, -1, 1>; Lhs = Eigen::Transpose<Eigen::Matrix<double, -1, -1> >; Rhs = Eigen::Matrix<double, -1, 1>; Derived = Eigen::internal::generic_product_impl<Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, Eigen::Matrix<double, -1, 1>, Eigen::DenseShape, Eigen::DenseShape, 7>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43:   required from ‘static void Eigen::internal::Assignment<DstXprType, Eigen::Product<Lhs, Rhs, Options>, Eigen::internal::assign_op<Scalar, Scalar>, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op<Scalar, Scalar>&) [with DstXprType = Eigen::Matrix<double, -1, 1>; Lhs = Eigen::Transpose<Eigen::Matrix<double, -1, -1> >; Rhs = Eigen::Matrix<double, -1, 1>; int Options = 0; Scalar = double; SrcXprType = Eigen::Product<Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, Eigen::Matrix<double, -1, 1>, 0>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix<double, -1, 1>; Src = Eigen::Product<Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, Eigen::Matrix<double, -1, 1>, 0>; Func = assign_op<double, double>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41:   required from ‘Derived& Eigen::PlainObjectBase<Derived>::_set_noalias(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, Eigen::Matrix<double, -1, 1>, 0>; Derived = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19:   required from ‘Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, Eigen::Matrix<double, -1, 1>, 0>; Derived = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, Eigen::Matrix<double, -1, 1>, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:22:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
   44 |   PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize);
      |                           ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’
   42 |   prefix ## name ## Packet
      |   ^~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   44 |   PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize);
      |                           ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’
   42 |   prefix ## name ## Packet
      |   ^~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
   44 |   PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize);
      |                           ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’
   42 |   prefix ## name ## Packet
      |   ^~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
   44 |   PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize);
      |                           ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’
   42 |   prefix ## name ## Packet
      |   ^~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
   45 |   PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize);
      |                           ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’
   42 |   prefix ## name ## Packet
      |   ^~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   45 |   PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize);
      |                           ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’
   42 |   prefix ## name ## Packet
      |   ^~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
   45 |   PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize);
      |                           ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’
   42 |   prefix ## name ## Packet
      |   ^~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
   45 |   PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize);
      |                           ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’
   42 |   prefix ## name ## Packet
      |   ^~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
   46 |   PACKET_DECL_COND_PREFIX(_, Res, _PacketSize);
      |                           ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’
   42 |   prefix ## name ## Packet
      |   ^~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   46 |   PACKET_DECL_COND_PREFIX(_, Res, _PacketSize);
      |                           ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’
   42 |   prefix ## name ## Packet
      |   ^~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
   46 |   PACKET_DECL_COND_PREFIX(_, Res, _PacketSize);
      |                           ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’
   42 |   prefix ## name ## Packet
      |   ^~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
   46 |   PACKET_DECL_COND_PREFIX(_, Res, _PacketSize);
      |                           ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’
   42 |   prefix ## name ## Packet
      |   ^~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
   51 |         Vectorizable = unpacket_traits<_LhsPacket>::vectorizable &&
      |                                                     ^~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
   52 |         unpacket_traits<_RhsPacket>::vectorizable &&
      |                                      ^~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
   53 |         int(unpacket_traits<_LhsPacket>::size)==int(unpacket_traits<_RhsPacket>::size),
      |                                          ^~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
   53 |         int(unpacket_traits<_LhsPacket>::size)==int(unpacket_traits<_RhsPacket>::size),
      |                                                                                  ^~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
   54 |         LhsPacketSize = Vectorizable ? unpacket_traits<_LhsPacket>::size : 1,
      |                                                                     ^~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
   55 |         RhsPacketSize = Vectorizable ? unpacket_traits<_RhsPacket>::size : 1,
      |                                                                     ^~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
   56 |         ResPacketSize = Vectorizable ? unpacket_traits<_ResPacket>::size : 1
      |                                                                     ^~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
   59 |   typedef typename conditional<Vectorizable,_LhsPacket,LhsScalar>::type LhsPacket;
      |                                                                         ^~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
   60 |   typedef typename conditional<Vectorizable,_RhsPacket,RhsScalar>::type RhsPacket;
      |                                                                         ^~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
   61 |   typedef typename conditional<Vectorizable,_ResPacket,ResScalar>::type ResPacket;
      |                                                                         ^~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h: In instantiation of ‘class Eigen::internal::gemv_traits<double, double, 1>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:310:42:   required from ‘struct Eigen::internal::general_matrix_vector_product<long int, double, Eigen::internal::const_blas_data_mapper<double, long int, 1>, 1, false, double, Eigen::internal::const_blas_data_mapper<double, long int, 0>, false, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:347:132:   required from ‘static void Eigen::internal::gemv_dense_selector<2, 1, true>::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose<Eigen::Matrix<double, -1, -1> >; Rhs = Eigen::Matrix<double, -1, 1>; Dest = Eigen::Matrix<double, -1, 1>; typename Dest::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:388:34:   required from ‘static void Eigen::internal::generic_product_impl<Lhs, Rhs, Eigen::DenseShape, Eigen::DenseShape, 7>::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Matrix<double, -1, 1>; Lhs = Eigen::Transpose<Eigen::Matrix<double, -1, -1> >; Rhs = Eigen::Matrix<double, -1, 1>; Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361:27:   required from ‘static void Eigen::internal::generic_product_impl_base<Lhs, Rhs, Derived>::scaleAndAddTo(Dst&, const Lhs&, const Rhs&, const Scalar&) [with Dst = Eigen::Matrix<double, -1, 1>; Lhs = Eigen::Transpose<Eigen::Matrix<double, -1, -1> >; Rhs = Eigen::Matrix<double, -1, 1>; Derived = Eigen::internal::generic_product_impl<Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, Eigen::Matrix<double, -1, 1>, Eigen::DenseShape, Eigen::DenseShape, 7>; Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349:33:   required from ‘static void Eigen::internal::generic_product_impl_base<Lhs, Rhs, Derived>::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix<double, -1, 1>; Lhs = Eigen::Transpose<Eigen::Matrix<double, -1, -1> >; Rhs = Eigen::Matrix<double, -1, 1>; Derived = Eigen::internal::generic_product_impl<Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, Eigen::Matrix<double, -1, 1>, Eigen::DenseShape, Eigen::DenseShape, 7>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43:   required from ‘static void Eigen::internal::Assignment<DstXprType, Eigen::Product<Lhs, Rhs, Options>, Eigen::internal::assign_op<Scalar, Scalar>, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op<Scalar, Scalar>&) [with DstXprType = Eigen::Matrix<double, -1, 1>; Lhs = Eigen::Transpose<Eigen::Matrix<double, -1, -1> >; Rhs = Eigen::Matrix<double, -1, 1>; int Options = 0; Scalar = double; SrcXprType = Eigen::Product<Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, Eigen::Matrix<double, -1, 1>, 0>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix<double, -1, 1>; Src = Eigen::Product<Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, Eigen::Matrix<double, -1, 1>, 0>; Func = assign_op<double, double>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41:   required from ‘Derived& Eigen::PlainObjectBase<Derived>::_set_noalias(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, Eigen::Matrix<double, -1, 1>, 0>; Derived = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19:   required from ‘Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, Eigen::Matrix<double, -1, 1>, 0>; Derived = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, Eigen::Matrix<double, -1, 1>, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:22:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
   44 |   PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize);
      |                           ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’
   42 |   prefix ## name ## Packet
      |   ^~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   44 |   PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize);
      |                           ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’
   42 |   prefix ## name ## Packet
      |   ^~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
   44 |   PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize);
      |                           ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’
   42 |   prefix ## name ## Packet
      |   ^~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
   44 |   PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize);
      |                           ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’
   42 |   prefix ## name ## Packet
      |   ^~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
   45 |   PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize);
      |                           ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’
   42 |   prefix ## name ## Packet
      |   ^~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   45 |   PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize);
      |                           ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’
   42 |   prefix ## name ## Packet
      |   ^~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
   45 |   PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize);
      |                           ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’
   42 |   prefix ## name ## Packet
      |   ^~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
   45 |   PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize);
      |                           ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’
   42 |   prefix ## name ## Packet
      |   ^~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
   46 |   PACKET_DECL_COND_PREFIX(_, Res, _PacketSize);
      |                           ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’
   42 |   prefix ## name ## Packet
      |   ^~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   46 |   PACKET_DECL_COND_PREFIX(_, Res, _PacketSize);
      |                           ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’
   42 |   prefix ## name ## Packet
      |   ^~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
   46 |   PACKET_DECL_COND_PREFIX(_, Res, _PacketSize);
      |                           ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’
   42 |   prefix ## name ## Packet
      |   ^~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
   46 |   PACKET_DECL_COND_PREFIX(_, Res, _PacketSize);
      |                           ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’
   42 |   prefix ## name ## Packet
      |   ^~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
   51 |         Vectorizable = unpacket_traits<_LhsPacket>::vectorizable &&
      |                                                     ^~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
   52 |         unpacket_traits<_RhsPacket>::vectorizable &&
      |                                      ^~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
   53 |         int(unpacket_traits<_LhsPacket>::size)==int(unpacket_traits<_RhsPacket>::size),
      |                                          ^~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
   53 |         int(unpacket_traits<_LhsPacket>::size)==int(unpacket_traits<_RhsPacket>::size),
      |                                                                                  ^~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
   54 |         LhsPacketSize = Vectorizable ? unpacket_traits<_LhsPacket>::size : 1,
      |                                                                     ^~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
   55 |         RhsPacketSize = Vectorizable ? unpacket_traits<_RhsPacket>::size : 1,
      |                                                                     ^~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
   56 |         ResPacketSize = Vectorizable ? unpacket_traits<_ResPacket>::size : 1
      |                                                                     ^~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
   59 |   typedef typename conditional<Vectorizable,_LhsPacket,LhsScalar>::type LhsPacket;
      |                                                                         ^~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
   60 |   typedef typename conditional<Vectorizable,_RhsPacket,RhsScalar>::type RhsPacket;
      |                                                                         ^~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
   61 |   typedef typename conditional<Vectorizable,_ResPacket,ResScalar>::type ResPacket;
      |                                                                         ^~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h: In instantiation of ‘class Eigen::internal::gemv_traits<double, double, 2>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:314:45:   required from ‘struct Eigen::internal::general_matrix_vector_product<long int, double, Eigen::internal::const_blas_data_mapper<double, long int, 1>, 1, false, double, Eigen::internal::const_blas_data_mapper<double, long int, 0>, false, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:347:132:   required from ‘static void Eigen::internal::gemv_dense_selector<2, 1, true>::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose<Eigen::Matrix<double, -1, -1> >; Rhs = Eigen::Matrix<double, -1, 1>; Dest = Eigen::Matrix<double, -1, 1>; typename Dest::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:388:34:   required from ‘static void Eigen::internal::generic_product_impl<Lhs, Rhs, Eigen::DenseShape, Eigen::DenseShape, 7>::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Matrix<double, -1, 1>; Lhs = Eigen::Transpose<Eigen::Matrix<double, -1, -1> >; Rhs = Eigen::Matrix<double, -1, 1>; Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361:27:   required from ‘static void Eigen::internal::generic_product_impl_base<Lhs, Rhs, Derived>::scaleAndAddTo(Dst&, const Lhs&, const Rhs&, const Scalar&) [with Dst = Eigen::Matrix<double, -1, 1>; Lhs = Eigen::Transpose<Eigen::Matrix<double, -1, -1> >; Rhs = Eigen::Matrix<double, -1, 1>; Derived = Eigen::internal::generic_product_impl<Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, Eigen::Matrix<double, -1, 1>, Eigen::DenseShape, Eigen::DenseShape, 7>; Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349:33:   required from ‘static void Eigen::internal::generic_product_impl_base<Lhs, Rhs, Derived>::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix<double, -1, 1>; Lhs = Eigen::Transpose<Eigen::Matrix<double, -1, -1> >; Rhs = Eigen::Matrix<double, -1, 1>; Derived = Eigen::internal::generic_product_impl<Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, Eigen::Matrix<double, -1, 1>, Eigen::DenseShape, Eigen::DenseShape, 7>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43:   required from ‘static void Eigen::internal::Assignment<DstXprType, Eigen::Product<Lhs, Rhs, Options>, Eigen::internal::assign_op<Scalar, Scalar>, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op<Scalar, Scalar>&) [with DstXprType = Eigen::Matrix<double, -1, 1>; Lhs = Eigen::Transpose<Eigen::Matrix<double, -1, -1> >; Rhs = Eigen::Matrix<double, -1, 1>; int Options = 0; Scalar = double; SrcXprType = Eigen::Product<Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, Eigen::Matrix<double, -1, 1>, 0>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix<double, -1, 1>; Src = Eigen::Product<Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, Eigen::Matrix<double, -1, 1>, 0>; Func = assign_op<double, double>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41:   required from ‘Derived& Eigen::PlainObjectBase<Derived>::_set_noalias(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, Eigen::Matrix<double, -1, 1>, 0>; Derived = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19:   required from ‘Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, Eigen::Matrix<double, -1, 1>, 0>; Derived = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, Eigen::Matrix<double, -1, 1>, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:22:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
   44 |   PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize);
      |                           ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’
   42 |   prefix ## name ## Packet
      |   ^~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   44 |   PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize);
      |                           ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’
   42 |   prefix ## name ## Packet
      |   ^~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
   44 |   PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize);
      |                           ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’
   42 |   prefix ## name ## Packet
      |   ^~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
   44 |   PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize);
      |                           ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’
   42 |   prefix ## name ## Packet
      |   ^~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
   45 |   PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize);
      |                           ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’
   42 |   prefix ## name ## Packet
      |   ^~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   45 |   PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize);
      |                           ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’
   42 |   prefix ## name ## Packet
      |   ^~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
   45 |   PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize);
      |                           ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’
   42 |   prefix ## name ## Packet
      |   ^~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
   45 |   PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize);
      |                           ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’
   42 |   prefix ## name ## Packet
      |   ^~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
   46 |   PACKET_DECL_COND_PREFIX(_, Res, _PacketSize);
      |                           ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’
   42 |   prefix ## name ## Packet
      |   ^~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   46 |   PACKET_DECL_COND_PREFIX(_, Res, _PacketSize);
      |                           ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’
   42 |   prefix ## name ## Packet
      |   ^~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
   46 |   PACKET_DECL_COND_PREFIX(_, Res, _PacketSize);
      |                           ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’
   42 |   prefix ## name ## Packet
      |   ^~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
   46 |   PACKET_DECL_COND_PREFIX(_, Res, _PacketSize);
      |                           ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’
   42 |   prefix ## name ## Packet
      |   ^~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
   51 |         Vectorizable = unpacket_traits<_LhsPacket>::vectorizable &&
      |                                                     ^~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
   52 |         unpacket_traits<_RhsPacket>::vectorizable &&
      |                                      ^~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
   53 |         int(unpacket_traits<_LhsPacket>::size)==int(unpacket_traits<_RhsPacket>::size),
      |                                          ^~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
   53 |         int(unpacket_traits<_LhsPacket>::size)==int(unpacket_traits<_RhsPacket>::size),
      |                                                                                  ^~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
   54 |         LhsPacketSize = Vectorizable ? unpacket_traits<_LhsPacket>::size : 1,
      |                                                                     ^~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
   55 |         RhsPacketSize = Vectorizable ? unpacket_traits<_RhsPacket>::size : 1,
      |                                                                     ^~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
   56 |         ResPacketSize = Vectorizable ? unpacket_traits<_ResPacket>::size : 1
      |                                                                     ^~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
   59 |   typedef typename conditional<Vectorizable,_LhsPacket,LhsScalar>::type LhsPacket;
      |                                                                         ^~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
   60 |   typedef typename conditional<Vectorizable,_RhsPacket,RhsScalar>::type RhsPacket;
      |                                                                         ^~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
   61 |   typedef typename conditional<Vectorizable,_ResPacket,ResScalar>::type ResPacket;
      |                                                                         ^~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, true>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, true>, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, true>, 3>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, true>, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43:   required from ‘static void Eigen::internal::Assignment<DstXprType, Eigen::Product<Lhs, Rhs, Options>, Eigen::internal::assign_op<Scalar, Scalar>, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op<Scalar, Scalar>&) [with DstXprType = Eigen::Matrix<double, -1, 1>; Lhs = Eigen::Transpose<Eigen::Matrix<double, -1, -1> >; Rhs = Eigen::Matrix<double, -1, 1>; int Options = 0; Scalar = double; SrcXprType = Eigen::Product<Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, Eigen::Matrix<double, -1, 1>, 0>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix<double, -1, 1>; Src = Eigen::Product<Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, Eigen::Matrix<double, -1, 1>, 0>; Func = assign_op<double, double>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41:   required from ‘Derived& Eigen::PlainObjectBase<Derived>::_set_noalias(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, Eigen::Matrix<double, -1, 1>, 0>; Derived = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19:   required from ‘Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, Eigen::Matrix<double, -1, 1>, 0>; Derived = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, Eigen::Matrix<double, -1, 1>, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:22:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   56 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, true>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, true>, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, true>, 3>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, true>, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41:   required from ‘Derived& Eigen::PlainObjectBase<Derived>::_set_noalias(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Matrix<double, -1, -1, 1, -1, -1>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 0>; Derived = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19:   required from ‘Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Matrix<double, -1, -1, 1, -1, -1>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 0>; Derived = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Matrix<double, -1, -1, 1, -1, -1>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:29:18:   required from ‘Eigen::Matrix<typename stan::value_type<T>::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0> >; stan::require_eigen_vt<std::is_arithmetic, T>* <anonymous> = 0; typename stan::value_type<T>::type = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20:   required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0>; stan::require_eigen_t<T_desired>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false> >, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false> >, 3>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37:   required from ‘class Eigen::TransposeImpl<Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41:   required from ‘Derived& Eigen::PlainObjectBase<Derived>::_set_noalias(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Matrix<double, -1, -1, 1, -1, -1>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 0>; Derived = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19:   required from ‘Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Matrix<double, -1, -1, 1, -1, -1>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 0>; Derived = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Matrix<double, -1, -1, 1, -1, -1>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:29:18:   required from ‘Eigen::Matrix<typename stan::value_type<T>::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0> >; stan::require_eigen_vt<std::is_arithmetic, T>* <anonymous> = 0; typename stan::value_type<T>::type = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20:   required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0>; stan::require_eigen_t<T_desired>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> > >, 2>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Transpose<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Transpose<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37:   required from ‘class Eigen::TransposeImpl<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   required from ‘class Eigen::Transpose<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:207:26:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41:   required from ‘Derived& Eigen::PlainObjectBase<Derived>::_set_noalias(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Matrix<double, -1, -1, 1, -1, -1>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 0>; Derived = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19:   required from ‘Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Matrix<double, -1, -1, 1, -1, -1>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 0>; Derived = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Matrix<double, -1, -1, 1, -1, -1>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:29:18:   required from ‘Eigen::Matrix<typename stan::value_type<T>::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0> >; stan::require_eigen_vt<std::is_arithmetic, T>* <anonymous> = 0; typename stan::value_type<T>::type = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20:   required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0>; stan::require_eigen_t<T_desired>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true> >, 2>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37:   required from ‘class Eigen::TransposeImpl<const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   required from ‘class Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:207:43:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41:   required from ‘Derived& Eigen::PlainObjectBase<Derived>::_set_noalias(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Matrix<double, -1, -1, 1, -1, -1>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 0>; Derived = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19:   required from ‘Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Matrix<double, -1, -1, 1, -1, -1>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 0>; Derived = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Matrix<double, -1, -1, 1, -1, -1>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:29:18:   required from ‘Eigen::Matrix<typename stan::value_type<T>::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0> >; stan::require_eigen_vt<std::is_arithmetic, T>* <anonymous> = 0; typename stan::value_type<T>::type = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20:   required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0>; stan::require_eigen_t<T_desired>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator<Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, -1, false> >’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:780:20:   required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, -1, false>; SrcXprType = Eigen::Map<const Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> >; Functor = assign_op<double, double>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31:   required from ‘static void Eigen::internal::Assignment<DstXprType, SrcXprType, Functor, Eigen::internal::Dense2Dense, Weak>::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, -1, false>; SrcXprType = Eigen::Map<const Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> >; Functor = Eigen::internal::assign_op<double, double>; Weak = void]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, -1, false>; Src = Eigen::Map<const Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> >; Func = assign_op<double, double>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing<Src>::value), void*>::type) [with Dst = Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, -1, false>; Src = Eigen::Map<const Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> >; Func = assign_op<double, double>; typename enable_if<(! evaluator_assume_aliasing<Src>::value), void*>::type = void*; typename evaluator_traits<SrcXprType>::Shape = Eigen::DenseShape]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:18:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, -1, false>; Src = Eigen::Map<const Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Assign.h:66:28:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CommaInitializer.h:159:10:   required from ‘Eigen::CommaInitializer<Derived> Eigen::DenseBase<Derived>::operator<<(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Map<const Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> >; Derived = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/append_row.hpp:102:10:   required from ‘Eigen::Matrix<typename stan::return_type<T1, T2>::type, -1, 1> stan::math::append_row(const ColVec&, const Scal&) [with ColVec = Eigen::Map<const Eigen::Array<double, -1, 1>, 0, Eigen::Stride<0, 0> >; Scal = double; stan::require_t<stan::is_eigen_col_vector<T> >* <anonymous> = 0; stan::require_stan_scalar_t<V>* <anonymous> = 0; typename stan::return_type<T1, T2>::type = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:29:31:   required from ‘T_return stan::math::internal::hypergeometric_3F2_infsum(const Ta&, const Tb&, const Tz&, double, int) [with Ta = std::vector<double>; Tb = std::vector<double>; Tz = double; T_return = double; ArrayAT = Eigen::Array<double, 3, 1>; ArrayBT = Eigen::Array<double, 3, 1>; stan::require_all_vector_t<T_y, T_high>* <anonymous> = 0; stan::require_stan_scalar_t<T2>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:123:47:   required from ‘auto stan::math::hypergeometric_3F2(const Ta&, const Tb&, const Tz&) [with Ta = std::vector<double>; Tb = std::vector<double>; Tz = double; stan::require_all_vector_t<T_y, T_high>* <anonymous> = 0; stan::require_stan_scalar_t<T2>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:148:28:   required from ‘auto stan::math::hypergeometric_3F2(const std::initializer_list<_Tp>&, const std::initializer_list<_Value>&, const Tz&) [with Ta = double; Tb = double; Tz = double; stan::require_all_stan_scalar_t<Ta, Tb, Tz>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/inv_inc_beta.hpp:77:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
 1071 |     PacketAlignment = unpacket_traits<PacketScalar>::alignment,
      |                                                      ^~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator<Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, -1, 1, false> >’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8:   required from ‘struct Eigen::internal::evaluator<const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, -1, 1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:564:45:   required from ‘struct Eigen::internal::unary_evaluator<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, -1, 1, false> >, Eigen::internal::IndexBased, double>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8:   required from ‘struct Eigen::internal::evaluator<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, -1, 1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7:   required from ‘class Eigen::internal::redux_evaluator<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, -1, 1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:414:17:   required from ‘typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, -1, 1, false> >; typename Eigen::internal::traits<T>::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:363:59:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, CoeffVectorType&) [with MatrixType = Eigen::Matrix<double, -1, -1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:449:31:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, 1, -1, true> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, 1, -1, true> >, 2>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, 1, -1, true> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, 1, -1, true> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37:   required from ‘class Eigen::TransposeImpl<const Eigen::Block<const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, 1, -1, true>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   required from ‘class Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, 1, -1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:23:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43:   required from ‘static void Eigen::internal::Assignment<DstXprType, Eigen::Product<Lhs, Rhs, Options>, Eigen::internal::assign_op<Scalar, Scalar>, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op<Scalar, Scalar>&) [with DstXprType = Eigen::Matrix<double, -1, 1>; Lhs = Eigen::Transpose<Eigen::Matrix<double, -1, -1> >; Rhs = Eigen::Matrix<double, -1, 1>; int Options = 0; Scalar = double; SrcXprType = Eigen::Product<Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, Eigen::Matrix<double, -1, 1>, 0>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix<double, -1, 1>; Src = Eigen::Product<Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, Eigen::Matrix<double, -1, 1>, 0>; Func = assign_op<double, double>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41:   required from ‘Derived& Eigen::PlainObjectBase<Derived>::_set_noalias(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, Eigen::Matrix<double, -1, 1>, 0>; Derived = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19:   required from ‘Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, Eigen::Matrix<double, -1, 1>, 0>; Derived = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, Eigen::Matrix<double, -1, 1>, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:22:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   56 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, 1, -1, true> >, const Eigen::Block<const Eigen::Matrix<double, -1, 1>, -1, 1, true> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, 1, -1, true> >, const Eigen::Block<const Eigen::Matrix<double, -1, 1>, -1, 1, true> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, 1, -1, true> >, const Eigen::Block<const Eigen::Matrix<double, -1, 1>, -1, 1, true> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, 1, -1, true> >, const Eigen::Block<const Eigen::Matrix<double, -1, 1>, -1, 1, true>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, 1, -1, true> >, const Eigen::Block<const Eigen::Matrix<double, -1, 1>, -1, 1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:56:   required from ‘static Eigen::internal::dot_nocheck<T, U, true>::ResScalar Eigen::internal::dot_nocheck<T, U, true>::run(const Eigen::MatrixBase<Derived>&, const Eigen::MatrixBase<U>&) [with T = Eigen::Block<const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, 1, -1, true>; U = Eigen::Block<const Eigen::Matrix<double, -1, 1>, -1, 1, true>; ResScalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43:   required from ‘static void Eigen::internal::Assignment<DstXprType, Eigen::Product<Lhs, Rhs, Options>, Eigen::internal::assign_op<Scalar, Scalar>, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op<Scalar, Scalar>&) [with DstXprType = Eigen::Matrix<double, -1, 1>; Lhs = Eigen::Transpose<Eigen::Matrix<double, -1, -1> >; Rhs = Eigen::Matrix<double, -1, 1>; int Options = 0; Scalar = double; SrcXprType = Eigen::Product<Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, Eigen::Matrix<double, -1, 1>, 0>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix<double, -1, 1>; Src = Eigen::Product<Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, Eigen::Matrix<double, -1, 1>, 0>; Func = assign_op<double, double>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41:   required from ‘Derived& Eigen::PlainObjectBase<Derived>::_set_noalias(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, Eigen::Matrix<double, -1, 1>, 0>; Derived = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19:   required from ‘Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, Eigen::Matrix<double, -1, 1>, 0>; Derived = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, Eigen::Matrix<double, -1, 1>, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:22:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase<Derived>&) [with Derived = Eigen::CwiseUnaryOp<scalar_abs_op<double>, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >; Eigen::Index = long int]’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63:   required from ‘static Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::Scalar Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >; Func = Eigen::internal::scalar_sum_op<double, double>; Evaluator = Eigen::internal::redux_evaluator<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> > >; Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56:   required from ‘typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >; typename Eigen::internal::traits<T>::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25:   required from ‘typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::sum() const [with Derived = Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >; typename Eigen::internal::traits<T>::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:221:28:   required from ‘static typename Eigen::NumTraits<typename Eigen::internal::traits<T>::Scalar>::Real Eigen::internal::lpNorm_selector<Derived, 1>::run(const Eigen::MatrixBase<Derived>&) [with Derived = Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>; typename Eigen::NumTraits<typename Eigen::internal::traits<T>::Scalar>::Real = double; typename Eigen::internal::traits<T>::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:269:52:   required from ‘typename Eigen::NumTraits<typename Eigen::internal::traits<T>::Scalar>::Real Eigen::MatrixBase<Derived>::lpNorm() const [with int p = 1; Derived = Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>; typename Eigen::NumTraits<typename Eigen::internal::traits<T>::Scalar>::Real = double; typename Eigen::internal::traits<T>::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:514:74:   required from ‘Eigen::LDLT<_MatrixType, _UpLo>& Eigen::LDLT<MatrixType, UpLo>::compute(const Eigen::EigenBase<OtherDerived>&) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>; int _UpLo = 1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:120:14:   required from ‘Eigen::LDLT<MatrixType, UpLo>::LDLT(const Eigen::EigenBase<OtherDerived>&) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>; int _UpLo = 1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:683:10:   required from ‘const Eigen::LDLT<typename Eigen::DenseBase<Derived>::PlainObject> Eigen::MatrixBase<Derived>::ldlt() const [with Derived = Eigen::Matrix<double, -1, -1>; typename Eigen::DenseBase<Derived>::PlainObject = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:45:67:   required from ‘void stan::math::check_pos_definite(const char*, const char*, const EigMat&) [with EigMat = Eigen::Matrix<double, -1, -1>; stan::require_matrix_t<T>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:21:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
  654 |   return internal::first_aligned<int(unpacket_traits<DefaultPacketType>::alignment),Derived>(m);
      |                                                                          ^~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false> >, const Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false> >, const Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false> >, const Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false> >, const Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false> >, const Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:251:54:   required from ‘static void Eigen::internal::generic_product_impl<Lhs, Rhs, Eigen::DenseShape, Eigen::DenseShape, 6>::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix<double, 1, 1, 0, 1, 1>; Lhs = Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>; Rhs = Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:124:75:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:359:56:   required from ‘static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix<double, -1, -1>; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:526:51:   required from ‘Eigen::LDLT<_MatrixType, _UpLo>& Eigen::LDLT<MatrixType, UpLo>::compute(const Eigen::EigenBase<OtherDerived>&) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>; int _UpLo = 1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:120:14:   required from ‘Eigen::LDLT<MatrixType, UpLo>::LDLT(const Eigen::EigenBase<OtherDerived>&) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>; int _UpLo = 1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:683:10:   required from ‘const Eigen::LDLT<typename Eigen::DenseBase<Derived>::PlainObject> Eigen::MatrixBase<Derived>::ldlt() const [with Derived = Eigen::Matrix<double, -1, -1>; typename Eigen::DenseBase<Derived>::PlainObject = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:45:67:   required from ‘void stan::math::check_pos_definite(const char*, const char*, const EigMat&) [with EigMat = Eigen::Matrix<double, -1, -1>; stan::require_matrix_t<T>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:21:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   56 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase<Derived>&) [with Derived = Eigen::CwiseBinaryOp<scalar_conj_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> >; Eigen::Index = long int]’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63:   required from ‘static Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::Scalar Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> >; Func = Eigen::internal::scalar_sum_op<double, double>; Evaluator = Eigen::internal::redux_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> > >; Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56:   required from ‘typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> >; typename Eigen::internal::traits<T>::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25:   required from ‘typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::sum() const [with Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> >; typename Eigen::internal::traits<T>::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:37:51:   required from ‘static Eigen::internal::dot_nocheck<T, U, NeedToTranspose>::ResScalar Eigen::internal::dot_nocheck<T, U, NeedToTranspose>::run(const Eigen::MatrixBase<Derived>&, const Eigen::MatrixBase<U>&) [with T = Eigen::Matrix<double, -1, 1>; U = Eigen::Matrix<double, -1, 1>; bool NeedToTranspose = false; ResScalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58:   required from ‘typename Eigen::ScalarBinaryOpTraits<typename Eigen::internal::traits<T>::Scalar, typename Eigen::internal::traits<OtherDerived>::Scalar>::ReturnType Eigen::MatrixBase<Derived>::dot(const Eigen::MatrixBase<OtherDerived>&) const [with OtherDerived = Eigen::Matrix<double, -1, 1>; Derived = Eigen::Matrix<double, -1, 1>; typename Eigen::ScalarBinaryOpTraits<typename Eigen::internal::traits<T>::Scalar, typename Eigen::internal::traits<OtherDerived>::Scalar>::ReturnType = double; typename Eigen::internal::traits<T>::Scalar = double; typename Eigen::internal::traits<OtherDerived>::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:199:0:   required from ‘int stan::optimization::BFGSMinimizer<FunctorType, QNUpdateType, Scalar, DimAtCompile>::step() [with FunctorType = stan::optimization::ModelAdaptor<model_shrinkage_namespace::model_shrinkage, false>; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0:   required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage; bool jacobian = false]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:15:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
  654 |   return internal::first_aligned<int(unpacket_traits<DefaultPacketType>::alignment),Derived>(m);
      |                                                                          ^~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, const Eigen::Block<const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, -1, 1, false>, 0>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, const Eigen::Block<const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, -1, 1, false>, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, const Eigen::Block<const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, -1, 1, false>, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7:   required from ‘class Eigen::internal::dense_product_base<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, const Eigen::Block<const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, -1, 1, false>, 0, 7>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7:   required from ‘class Eigen::ProductImpl<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, const Eigen::Block<const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, -1, 1, false>, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, const Eigen::Block<const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, -1, 1, false>, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:345:45:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:37:0:   required from ‘Scalar stan::optimization::BFGSUpdate_HInv<Scalar, DimAtCompile>::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0:   required from ‘int stan::optimization::BFGSMinimizer<FunctorType, QNUpdateType, Scalar, DimAtCompile>::step() [with FunctorType = stan::optimization::ModelAdaptor<model_shrinkage_namespace::model_shrinkage, false>; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0:   required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage; bool jacobian = false]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:15:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   56 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, -1, 1, false>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, -1, 1, false>, 2>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Block<const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, -1, 1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Block<const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, -1, 1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Block<const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, -1, 1, false>, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7:   required from ‘class Eigen::internal::BlockImpl_dense<const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, -1, 1, false, true>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:37:0:   required from ‘Scalar stan::optimization::BFGSUpdate_HInv<Scalar, DimAtCompile>::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0:   required from ‘int stan::optimization::BFGSMinimizer<FunctorType, QNUpdateType, Scalar, DimAtCompile>::step() [with FunctorType = stan::optimization::ModelAdaptor<model_shrinkage_namespace::model_shrinkage, false>; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0:   required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage; bool jacobian = false]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:15:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator<Eigen::Block<const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, -1, 1, false> >’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8:   required from ‘struct Eigen::internal::evaluator<const Eigen::Block<const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, -1, 1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:372:102:   required from ‘struct Eigen::internal::plain_object_eval<const Eigen::Block<const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, -1, 1, false>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:370:45:   required from ‘struct Eigen::internal::generic_product_impl<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, const Eigen::Block<const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, -1, 1, false>, Eigen::DenseShape, Eigen::DenseShape, 7>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:479:24:   required from ‘static void Eigen::internal::generic_product_impl<Lhs, Rhs, Eigen::DenseShape, Eigen::DenseShape, 8>::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Matrix<double, -1, -1>; Lhs = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >; Rhs = Eigen::Transpose<Eigen::Matrix<double, -1, -1> >; Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:445:20:   required from ‘static void Eigen::internal::generic_product_impl<Lhs, Rhs, Eigen::DenseShape, Eigen::DenseShape, 8>::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix<double, -1, -1>; Lhs = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >; Rhs = Eigen::Transpose<Eigen::Matrix<double, -1, -1> >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:37:0:   required from ‘Scalar stan::optimization::BFGSUpdate_HInv<Scalar, DimAtCompile>::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0:   required from ‘int stan::optimization::BFGSMinimizer<FunctorType, QNUpdateType, Scalar, DimAtCompile>::step() [with FunctorType = stan::optimization::ModelAdaptor<model_shrinkage_namespace::model_shrinkage, false>; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0:   required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage; bool jacobian = false]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:15:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
 1071 |     PacketAlignment = unpacket_traits<PacketScalar>::alignment,
      |                                                      ^~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Product<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, 1, -1, false>, Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, 0>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Product<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, 1, -1, false>, Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Product<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, 1, -1, false>, Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7:   required from ‘class Eigen::internal::dense_product_base<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, 1, -1, false>, Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, 0, 7>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7:   required from ‘class Eigen::ProductImpl<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, 1, -1, false>, Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, 1, -1, false>, Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:345:45:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:37:0:   required from ‘Scalar stan::optimization::BFGSUpdate_HInv<Scalar, DimAtCompile>::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0:   required from ‘int stan::optimization::BFGSMinimizer<FunctorType, QNUpdateType, Scalar, DimAtCompile>::step() [with FunctorType = stan::optimization::ModelAdaptor<model_shrinkage_namespace::model_shrinkage, false>; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0:   required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage; bool jacobian = false]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:15:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   56 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, 1, -1, false>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, 1, -1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, 1, -1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:172:103:   required from ‘class Eigen::internal::BlockImpl_dense<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, 1, -1, false, false>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   required from ‘class Eigen::BlockImpl<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, 1, -1, false, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81:   required from ‘class Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, 1, -1, false>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:113:15:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:37:0:   required from ‘Scalar stan::optimization::BFGSUpdate_HInv<Scalar, DimAtCompile>::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0:   required from ‘int stan::optimization::BFGSMinimizer<FunctorType, QNUpdateType, Scalar, DimAtCompile>::step() [with FunctorType = stan::optimization::ModelAdaptor<model_shrinkage_namespace::model_shrinkage, false>; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0:   required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage; bool jacobian = false]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:15:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator<Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, 1, -1, false> >’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8:   required from ‘struct Eigen::internal::evaluator<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, 1, -1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:372:102:   required from ‘struct Eigen::internal::plain_object_eval<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, 1, -1, false>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:369:45:   required from ‘struct Eigen::internal::generic_product_impl<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, 1, -1, false>, Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, Eigen::DenseShape, Eigen::DenseShape, 7>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:486:24:   required from ‘static void Eigen::internal::generic_product_impl<Lhs, Rhs, Eigen::DenseShape, Eigen::DenseShape, 8>::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Matrix<double, -1, -1>; Lhs = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >; Rhs = Eigen::Transpose<Eigen::Matrix<double, -1, -1> >; Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:445:20:   required from ‘static void Eigen::internal::generic_product_impl<Lhs, Rhs, Eigen::DenseShape, Eigen::DenseShape, 8>::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix<double, -1, -1>; Lhs = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >; Rhs = Eigen::Transpose<Eigen::Matrix<double, -1, -1> >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:37:0:   required from ‘Scalar stan::optimization::BFGSUpdate_HInv<Scalar, DimAtCompile>::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0:   required from ‘int stan::optimization::BFGSMinimizer<FunctorType, QNUpdateType, Scalar, DimAtCompile>::step() [with FunctorType = stan::optimization::ModelAdaptor<model_shrinkage_namespace::model_shrinkage, false>; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0:   required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage; bool jacobian = false]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:15:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
 1071 |     PacketAlignment = unpacket_traits<PacketScalar>::alignment,
      |                                                      ^~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase<Derived>&) [with Derived = Eigen::Array<double, -1, 1>; Eigen::Index = long int]’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63:   required from ‘static Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::Scalar Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::Array<double, -1, 1>; Func = Eigen::internal::scalar_sum_op<double, double>; Evaluator = Eigen::internal::redux_evaluator<Eigen::Array<double, -1, 1> >; Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56:   required from ‘typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::Array<double, -1, 1>; typename Eigen::internal::traits<T>::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25:   required from ‘typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::sum() const [with Derived = Eigen::Array<double, -1, 1>; typename Eigen::internal::traits<T>::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/sum.hpp:47:15:   required from ‘stan::value_type_t<T> stan::math::sum(const T&) [with T = Eigen::Array<double, -1, 1>; stan::require_eigen_vt<std::is_arithmetic, T>* <anonymous> = 0; stan::value_type_t<T> = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:82:38:   required from ‘stan::return_type_t<T, L, U> stan::math::normal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = true; T_y = Eigen::Matrix<var_value<double>, -1, 1>; T_loc = var_value<double>; T_scale = var_value<double>; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t<T_y, T_scale_succ, T_scale_fail>* <anonymous> = 0; stan::return_type_t<T, L, U> = var_value<double>]’
stanExports_shrinkage.h:328:0:   required from ‘stan::scalar_type_t<T2> model_shrinkage_namespace::model_shrinkage::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector<stan::math::var_value<double>, std::allocator<stan::math::var_value<double> > >; VecI = std::vector<int>; stan::require_vector_like_t<VecR>* <anonymous> = 0; stan::require_vector_like_vt<std::is_integral, VecI>* <anonymous> = 0; stan::scalar_type_t<T2> = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
stanExports_shrinkage.h:884:0:   required from ‘T_ model_shrinkage_namespace::model_shrinkage::log_prob(std::vector<T_l>&, std::vector<int>&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0:   required from ‘double stan::model::log_prob_grad(const M&, std::vector<double>&, std::vector<int>&, std::vector<double>&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_shrinkage_namespace::model_shrinkage; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::grad_log_prob(SEXP, SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:23:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
  654 |   return internal::first_aligned<int(unpacket_traits<DefaultPacketType>::alignment),Derived>(m);
      |                                                                          ^~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true> >, const Eigen::Block<const Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, -1, 1, true>, -1, 1, true> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true> >, const Eigen::Block<const Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, -1, 1, true>, -1, 1, true> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true> >, const Eigen::Block<const Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, -1, 1, true>, -1, 1, true> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true> >, const Eigen::Block<const Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, -1, 1, true>, -1, 1, true>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true> >, const Eigen::Block<const Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, -1, 1, true>, -1, 1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:56:   required from ‘static Eigen::internal::dot_nocheck<T, U, true>::ResScalar Eigen::internal::dot_nocheck<T, U, true>::run(const Eigen::MatrixBase<Derived>&, const Eigen::MatrixBase<U>&) [with T = Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>; U = Eigen::Block<const Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, -1, 1, true>, -1, 1, true>; ResScalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41:   required from ‘Derived& Eigen::PlainObjectBase<Derived>::_set_noalias(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Matrix<double, -1, -1, 1, -1, -1>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 0>; Derived = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19:   required from ‘Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Matrix<double, -1, -1, 1, -1, -1>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 0>; Derived = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Matrix<double, -1, -1, 1, -1, -1>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:29:18:   required from ‘Eigen::Matrix<typename stan::value_type<T>::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0> >; stan::require_eigen_vt<std::is_arithmetic, T>* <anonymous> = 0; typename stan::value_type<T>::type = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20:   required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0>; stan::require_eigen_t<T_desired>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   56 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, true> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, true> >, 2>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, true> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, true> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37:   required from ‘class Eigen::TransposeImpl<const Eigen::Block<const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, true>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   required from ‘class Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:23:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41:   required from ‘Derived& Eigen::PlainObjectBase<Derived>::_set_noalias(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Matrix<double, -1, -1, 1, -1, -1>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 0>; Derived = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19:   required from ‘Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Matrix<double, -1, -1, 1, -1, -1>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 0>; Derived = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Matrix<double, -1, -1, 1, -1, -1>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:29:18:   required from ‘Eigen::Matrix<typename stan::value_type<T>::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0> >; stan::require_eigen_vt<std::is_arithmetic, T>* <anonymous> = 0; typename stan::value_type<T>::type = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20:   required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0>; stan::require_eigen_t<T_desired>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, true> >, const Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, -1, 1, true> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, true> >, const Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, -1, 1, true> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, true> >, const Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, -1, 1, true> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, true> >, const Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, -1, 1, true>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, true> >, const Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, -1, 1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:56:   required from ‘static Eigen::internal::dot_nocheck<T, U, true>::ResScalar Eigen::internal::dot_nocheck<T, U, true>::run(const Eigen::MatrixBase<Derived>&, const Eigen::MatrixBase<U>&) [with T = Eigen::Block<const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, true>; U = Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, -1, 1, true>; ResScalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41:   required from ‘Derived& Eigen::PlainObjectBase<Derived>::_set_noalias(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Matrix<double, -1, -1, 1, -1, -1>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 0>; Derived = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19:   required from ‘Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Matrix<double, -1, -1, 1, -1, -1>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 0>; Derived = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Matrix<double, -1, -1, 1, -1, -1>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:29:18:   required from ‘Eigen::Matrix<typename stan::value_type<T>::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0> >; stan::require_eigen_vt<std::is_arithmetic, T>* <anonymous> = 0; typename stan::value_type<T>::type = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20:   required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0>; stan::require_eigen_t<T_desired>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false> >, -1, 1, true>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false> >, -1, 1, true>, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false> >, -1, 1, true>, 3>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Block<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false> >, -1, 1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Block<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false> >, -1, 1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Block<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false> >, -1, 1, true>, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34:   [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41:   required from ‘Derived& Eigen::PlainObjectBase<Derived>::_set_noalias(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Matrix<double, -1, -1, 1, -1, -1>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 0>; Derived = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19:   required from ‘Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Matrix<double, -1, -1, 1, -1, -1>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 0>; Derived = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Matrix<double, -1, -1, 1, -1, -1>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:29:18:   required from ‘Eigen::Matrix<typename stan::value_type<T>::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0> >; stan::require_eigen_vt<std::is_arithmetic, T>* <anonymous> = 0; typename stan::value_type<T>::type = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20:   required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0>; stan::require_eigen_t<T_desired>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Product<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >, 0>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Product<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Product<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7:   required from ‘class Eigen::internal::dense_product_base<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >, 0, 7>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7:   required from ‘class Eigen::ProductImpl<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointMatrixVector.h:166:45:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:369:35:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, CoeffVectorType&) [with MatrixType = Eigen::Matrix<double, -1, -1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:449:31:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase<Derived>&) [with Derived = Eigen::CwiseBinaryOp<scalar_conj_product_op<double, double>, const Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >; Eigen::Index = long int]’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63:   required from ‘static Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::Scalar Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >; Func = Eigen::internal::scalar_sum_op<double, double>; Evaluator = Eigen::internal::redux_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> > >; Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56:   required from ‘typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >; typename Eigen::internal::traits<T>::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25:   required from ‘typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::sum() const [with Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >; typename Eigen::internal::traits<T>::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:37:51:   required from ‘static Eigen::internal::dot_nocheck<T, U, NeedToTranspose>::ResScalar Eigen::internal::dot_nocheck<T, U, NeedToTranspose>::run(const Eigen::MatrixBase<Derived>&, const Eigen::MatrixBase<U>&) [with T = Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>; U = Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>; bool NeedToTranspose = false; ResScalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58:   required from ‘typename Eigen::ScalarBinaryOpTraits<typename Eigen::internal::traits<T>::Scalar, typename Eigen::internal::traits<OtherDerived>::Scalar>::ReturnType Eigen::MatrixBase<Derived>::dot(const Eigen::MatrixBase<OtherDerived>&) const [with OtherDerived = Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>; Derived = Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>; typename Eigen::ScalarBinaryOpTraits<typename Eigen::internal::traits<T>::Scalar, typename Eigen::internal::traits<OtherDerived>::Scalar>::ReturnType = double; typename Eigen::internal::traits<T>::Scalar = double; typename Eigen::internal::traits<OtherDerived>::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:372:86:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, CoeffVectorType&) [with MatrixType = Eigen::Matrix<double, -1, -1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:449:31:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
  654 |   return internal::first_aligned<int(unpacket_traits<DefaultPacketType>::alignment),Derived>(m);
      |                                                                          ^~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false>, 2>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false>, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7:   required from ‘class Eigen::internal::BlockImpl_dense<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false, true>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:361:25:   required from ‘static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix<double, -1, -1>; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:526:51:   required from ‘Eigen::LDLT<_MatrixType, _UpLo>& Eigen::LDLT<MatrixType, UpLo>::compute(const Eigen::EigenBase<OtherDerived>&) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>; int _UpLo = 1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:120:14:   required from ‘Eigen::LDLT<MatrixType, UpLo>::LDLT(const Eigen::EigenBase<OtherDerived>&) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>; int _UpLo = 1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:683:10:   required from ‘const Eigen::LDLT<typename Eigen::DenseBase<Derived>::PlainObject> Eigen::MatrixBase<Derived>::ldlt() const [with Derived = Eigen::Matrix<double, -1, -1>; typename Eigen::DenseBase<Derived>::PlainObject = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:45:67:   required from ‘void stan::math::check_pos_definite(const char*, const char*, const EigMat&) [with EigMat = Eigen::Matrix<double, -1, -1>; stan::require_matrix_t<T>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:21:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   56 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>, -1, 1, true>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>, -1, 1, true>, 2>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>, -1, 1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>, -1, 1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>, -1, 1, true>, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7:   required from ‘class Eigen::internal::BlockImpl_dense<const Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>, -1, 1, true, true>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:361:25:   required from ‘static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix<double, -1, -1>; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:526:51:   required from ‘Eigen::LDLT<_MatrixType, _UpLo>& Eigen::LDLT<MatrixType, UpLo>::compute(const Eigen::EigenBase<OtherDerived>&) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>; int _UpLo = 1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:120:14:   required from ‘Eigen::LDLT<MatrixType, UpLo>::LDLT(const Eigen::EigenBase<OtherDerived>&) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>; int _UpLo = 1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:683:10:   required from ‘const Eigen::LDLT<typename Eigen::DenseBase<Derived>::PlainObject> Eigen::MatrixBase<Derived>::ldlt() const [with Derived = Eigen::Matrix<double, -1, -1>; typename Eigen::DenseBase<Derived>::PlainObject = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:45:67:   required from ‘void stan::math::check_pos_definite(const char*, const char*, const EigMat&) [with EigMat = Eigen::Matrix<double, -1, -1>; stan::require_matrix_t<T>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:21:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase<Derived>&) [with Derived = Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >; Eigen::Index = long int]’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63:   required from ‘static Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::Scalar Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >; Func = Eigen::internal::scalar_sum_op<double, double>; Evaluator = Eigen::internal::redux_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> > >; Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56:   required from ‘typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >; typename Eigen::internal::traits<T>::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25:   required from ‘typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::sum() const [with Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >; typename Eigen::internal::traits<T>::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/sum.hpp:47:15:   required from ‘stan::value_type_t<T> stan::math::sum(const T&) [with T = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Array<double, -1, 1>, const Eigen::Array<double, -1, 1> >; stan::require_eigen_vt<std::is_arithmetic, T>* <anonymous> = 0; stan::value_type_t<T> = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:82:38:   required from ‘stan::return_type_t<T, L, U> stan::math::normal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = false; T_y = Eigen::Matrix<double, -1, 1>; T_loc = double; T_scale = double; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t<T_y, T_scale_succ, T_scale_fail>* <anonymous> = 0; stan::return_type_t<T, L, U> = double]’
stanExports_shrinkage.h:328:0:   required from ‘stan::scalar_type_t<T2> model_shrinkage_namespace::model_shrinkage::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; VecR = std::vector<double>; VecI = std::vector<int>; stan::require_vector_like_t<VecR>* <anonymous> = 0; stan::require_vector_like_vt<std::is_integral, VecI>* <anonymous> = 0; stan::scalar_type_t<T2> = double; std::ostream = std::basic_ostream<char>]’
stanExports_shrinkage.h:884:0:   required from ‘T_ model_shrinkage_namespace::model_shrinkage::log_prob(std::vector<T_l>&, std::vector<int>&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T_ = double; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:56:0:   required from ‘int stan::services::optimize::newton(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage; bool jacobian = false]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:502:0:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:15:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
  654 |   return internal::first_aligned<int(unpacket_traits<DefaultPacketType>::alignment),Derived>(m);
      |                                                                          ^~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 1>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7:   required from ‘class Eigen::internal::dense_product_base<Eigen::Matrix<double, -1, -1>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 1, 8>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7:   required from ‘class Eigen::ProductImpl<Eigen::Matrix<double, -1, -1>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 1, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:469:72:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:37:0:   required from ‘Scalar stan::optimization::BFGSUpdate_HInv<Scalar, DimAtCompile>::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0:   required from ‘int stan::optimization::BFGSMinimizer<FunctorType, QNUpdateType, Scalar, DimAtCompile>::step() [with FunctorType = stan::optimization::ModelAdaptor<model_shrinkage_namespace::model_shrinkage, false>; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0:   required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage; bool jacobian = false]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:15:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   56 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 1> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 1>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:469:55:   required from ‘static void Eigen::internal::generic_product_impl<Lhs, Rhs, Eigen::DenseShape, Eigen::DenseShape, 3>::eval_dynamic_impl(Dst&, const LhsT&, const RhsT&, const Func&, const Scalar&, Eigen::internal::true_type) [with Dst = Eigen::Matrix<double, -1, -1>; LhsT = Eigen::Matrix<double, -1, -1>; RhsT = Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >; Func = Eigen::internal::assign_op<double, double>; Scalar = double; Lhs = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >; Rhs = Eigen::Transpose<Eigen::Matrix<double, -1, -1> >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:446:22:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:37:0:   required from ‘Scalar stan::optimization::BFGSUpdate_HInv<Scalar, DimAtCompile>::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0:   required from ‘int stan::optimization::BFGSMinimizer<FunctorType, QNUpdateType, Scalar, DimAtCompile>::step() [with FunctorType = stan::optimization::ModelAdaptor<model_shrinkage_namespace::model_shrinkage, false>; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0:   required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage; bool jacobian = false]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:15:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Block<const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, -1, 1, false>, -1, 1, true>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Block<const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, -1, 1, false>, -1, 1, true>, 2>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Block<const Eigen::Block<const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, -1, 1, false>, -1, 1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Block<const Eigen::Block<const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, -1, 1, false>, -1, 1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Block<const Eigen::Block<const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, -1, 1, false>, -1, 1, true>, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7:   required from ‘class Eigen::internal::BlockImpl_dense<const Eigen::Block<const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, -1, 1, false>, -1, 1, true, true>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:37:0:   required from ‘Scalar stan::optimization::BFGSUpdate_HInv<Scalar, DimAtCompile>::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0:   required from ‘int stan::optimization::BFGSMinimizer<FunctorType, QNUpdateType, Scalar, DimAtCompile>::step() [with FunctorType = stan::optimization::ModelAdaptor<model_shrinkage_namespace::model_shrinkage, false>; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0:   required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage; bool jacobian = false]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:15:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, 1, -1, false>, 1, -1, true>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Block<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, 1, -1, false>, 1, -1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Block<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, 1, -1, false>, 1, -1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:172:103:   required from ‘class Eigen::internal::BlockImpl_dense<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, 1, -1, false>, 1, -1, true, false>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   required from ‘class Eigen::BlockImpl<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, 1, -1, false>, 1, -1, true, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81:   required from ‘class Eigen::Block<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, 1, -1, false>, 1, -1, true>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:380:43:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:37:0:   required from ‘Scalar stan::optimization::BFGSUpdate_HInv<Scalar, DimAtCompile>::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0:   required from ‘int stan::optimization::BFGSMinimizer<FunctorType, QNUpdateType, Scalar, DimAtCompile>::step() [with FunctorType = stan::optimization::ModelAdaptor<model_shrinkage_namespace::model_shrinkage, false>; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0:   required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage; bool jacobian = false]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:15:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase<Derived>&) [with Derived = Eigen::CwiseBinaryOp<scalar_difference_op<double, double>, const Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >; Eigen::Index = long int]’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63:   required from ‘static Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::Scalar Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >; Func = Eigen::internal::scalar_sum_op<double, double>; Evaluator = Eigen::internal::redux_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >; Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56:   required from ‘typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >; typename Eigen::internal::traits<T>::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25:   required from ‘typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::sum() const [with Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >; typename Eigen::internal::traits<T>::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/sum.hpp:47:15:   required from ‘stan::value_type_t<T> stan::math::sum(const T&) [with T = Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >; stan::require_eigen_vt<std::is_arithmetic, T>* <anonymous> = 0; stan::value_type_t<T> = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/functor/broadcast_array.hpp:32:16:   required from ‘void stan::math::internal::broadcast_array<T>::operator=(const Y&) [with Y = Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >; T = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/normal_lpdf.hpp:99:33:   required from ‘stan::return_type_t<T, L, U> stan::math::normal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = true; T_y = Eigen::Matrix<var_value<double>, -1, 1>; T_loc = var_value<double>; T_scale = var_value<double>; stan::require_all_not_nonscalar_prim_or_rev_kernel_expression_t<T_y, T_scale_succ, T_scale_fail>* <anonymous> = 0; stan::return_type_t<T, L, U> = var_value<double>]’
stanExports_shrinkage.h:328:0:   required from ‘stan::scalar_type_t<T2> model_shrinkage_namespace::model_shrinkage::log_prob_impl(VecR&, VecI&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; VecR = std::vector<stan::math::var_value<double>, std::allocator<stan::math::var_value<double> > >; VecI = std::vector<int>; stan::require_vector_like_t<VecR>* <anonymous> = 0; stan::require_vector_like_vt<std::is_integral, VecI>* <anonymous> = 0; stan::scalar_type_t<T2> = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
stanExports_shrinkage.h:884:0:   required from ‘T_ model_shrinkage_namespace::model_shrinkage::log_prob(std::vector<T_l>&, std::vector<int>&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T_ = stan::math::var_value<double>; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:0:   required from ‘double stan::model::log_prob_grad(const M&, std::vector<double>&, std::vector<int>&, std::vector<double>&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_shrinkage_namespace::model_shrinkage; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1183:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::grad_log_prob(SEXP, SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:23:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
  654 |   return internal::first_aligned<int(unpacket_traits<DefaultPacketType>::alignment),Derived>(m);
      |                                                                          ^~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase<Derived>&) [with Derived = Eigen::CwiseUnaryOp<scalar_abs2_op<double>, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, -1, 1, false> >; Eigen::Index = long int]’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63:   required from ‘static Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::Scalar Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, -1, 1, false> >; Func = Eigen::internal::scalar_sum_op<double, double>; Evaluator = Eigen::internal::redux_evaluator<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, -1, 1, false> > >; Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56:   required from ‘typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, -1, 1, false> >; typename Eigen::internal::traits<T>::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25:   required from ‘typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::sum() const [with Derived = Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, -1, 1, false> >; typename Eigen::internal::traits<T>::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:98:46:   required from ‘typename Eigen::NumTraits<typename Eigen::internal::traits<T>::Scalar>::Real Eigen::MatrixBase<Derived>::squaredNorm() const [with Derived = Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, -1, 1, false>; typename Eigen::NumTraits<typename Eigen::internal::traits<T>::Scalar>::Real = double; typename Eigen::internal::traits<T>::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Householder/Householder.h:78:71:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:363:59:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, CoeffVectorType&) [with MatrixType = Eigen::Matrix<double, -1, -1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:449:31:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Matrix<double, -1, 1>, 2, Eigen::Stride<0, 0> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Matrix<double, -1, 1>, 2, Eigen::Stride<0, 0> >, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Matrix<double, -1, 1>, 2, Eigen::Stride<0, 0> >, 3>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Map<Eigen::Matrix<double, -1, 1>, 2, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<double, -1, 1>, 2, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Map<Eigen::Matrix<double, -1, 1>, 2, Eigen::Stride<0, 0> >, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:369:35:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, CoeffVectorType&) [with MatrixType = Eigen::Matrix<double, -1, -1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:449:31:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   56 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator<Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>, -1, 1, false> >’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8:   required from ‘struct Eigen::internal::evaluator<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>, -1, 1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78:   required from ‘struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>, -1, 1, false> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8:   required from ‘struct Eigen::internal::evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>, -1, 1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8:   required from ‘struct Eigen::internal::evaluator<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>, -1, 1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:41:   required from ‘struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>, -1, 1, false> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, -1, 1, false> > >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:375:18:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, CoeffVectorType&) [with MatrixType = Eigen::Matrix<double, -1, -1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:449:31:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
 1071 |     PacketAlignment = unpacket_traits<PacketScalar>::alignment,
      |                                                      ^~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator<Eigen::Block<const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, 1, -1, true> >’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8:   required from ‘struct Eigen::internal::evaluator<const Eigen::Block<const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, 1, -1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:311:41:   required from ‘struct Eigen::internal::unary_evaluator<Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, 1, -1, true> >, Eigen::internal::IndexBased, double>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8:   required from ‘struct Eigen::internal::evaluator<Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, 1, -1, true> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8:   required from ‘struct Eigen::internal::evaluator<const Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, 1, -1, true> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:41:   required from ‘struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, 1, -1, true> >, const Eigen::Block<const Eigen::Matrix<double, -1, 1>, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43:   required from ‘static void Eigen::internal::Assignment<DstXprType, Eigen::Product<Lhs, Rhs, Options>, Eigen::internal::assign_op<Scalar, Scalar>, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op<Scalar, Scalar>&) [with DstXprType = Eigen::Matrix<double, -1, 1>; Lhs = Eigen::Transpose<Eigen::Matrix<double, -1, -1> >; Rhs = Eigen::Matrix<double, -1, 1>; int Options = 0; Scalar = double; SrcXprType = Eigen::Product<Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, Eigen::Matrix<double, -1, 1>, 0>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix<double, -1, 1>; Src = Eigen::Product<Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, Eigen::Matrix<double, -1, 1>, 0>; Func = assign_op<double, double>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41:   required from ‘Derived& Eigen::PlainObjectBase<Derived>::_set_noalias(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, Eigen::Matrix<double, -1, 1>, 0>; Derived = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19:   required from ‘Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, Eigen::Matrix<double, -1, 1>, 0>; Derived = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, Eigen::Matrix<double, -1, 1>, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:22:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator<Eigen::Block<const Eigen::Matrix<double, -1, 1>, -1, 1, true> >’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8:   required from ‘struct Eigen::internal::evaluator<const Eigen::Block<const Eigen::Matrix<double, -1, 1>, -1, 1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78:   required from ‘struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, 1, -1, true> >, const Eigen::Block<const Eigen::Matrix<double, -1, 1>, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8:   required from ‘struct Eigen::internal::evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, 1, -1, true> >, const Eigen::Block<const Eigen::Matrix<double, -1, 1>, -1, 1, true> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7:   required from ‘class Eigen::internal::redux_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, 1, -1, true> >, const Eigen::Block<const Eigen::Matrix<double, -1, 1>, -1, 1, true> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:414:17:   required from ‘typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, 1, -1, true> >, const Eigen::Block<const Eigen::Matrix<double, -1, 1>, -1, 1, true> >; typename Eigen::internal::traits<T>::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43:   required from ‘static void Eigen::internal::Assignment<DstXprType, Eigen::Product<Lhs, Rhs, Options>, Eigen::internal::assign_op<Scalar, Scalar>, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op<Scalar, Scalar>&) [with DstXprType = Eigen::Matrix<double, -1, 1>; Lhs = Eigen::Transpose<Eigen::Matrix<double, -1, -1> >; Rhs = Eigen::Matrix<double, -1, 1>; int Options = 0; Scalar = double; SrcXprType = Eigen::Product<Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, Eigen::Matrix<double, -1, 1>, 0>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix<double, -1, 1>; Src = Eigen::Product<Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, Eigen::Matrix<double, -1, 1>, 0>; Func = assign_op<double, double>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41:   required from ‘Derived& Eigen::PlainObjectBase<Derived>::_set_noalias(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, Eigen::Matrix<double, -1, 1>, 0>; Derived = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19:   required from ‘Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, Eigen::Matrix<double, -1, 1>, 0>; Derived = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, Eigen::Matrix<double, -1, 1>, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:22:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 2, Eigen::Stride<0, 0> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 2, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 2, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 2, Eigen::Stride<0, 0> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 2, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:296:40:   required from ‘static void Eigen::internal::gemv_dense_selector<2, 0, true>::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Rhs = Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>; Dest = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, false>; typename Dest::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:388:34:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:361:25:   required from ‘static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix<double, -1, -1>; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:526:51:   required from ‘Eigen::LDLT<_MatrixType, _UpLo>& Eigen::LDLT<MatrixType, UpLo>::compute(const Eigen::EigenBase<OtherDerived>&) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>; int _UpLo = 1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:120:14:   required from ‘Eigen::LDLT<MatrixType, UpLo>::LDLT(const Eigen::EigenBase<OtherDerived>&) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>; int _UpLo = 1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:683:10:   required from ‘const Eigen::LDLT<typename Eigen::DenseBase<Derived>::PlainObject> Eigen::MatrixBase<Derived>::ldlt() const [with Derived = Eigen::Matrix<double, -1, -1>; typename Eigen::DenseBase<Derived>::PlainObject = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:45:67:   required from ‘void stan::math::check_pos_definite(const char*, const char*, const EigMat&) [with EigMat = Eigen::Matrix<double, -1, -1>; stan::require_matrix_t<T>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:21:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   56 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Transpose<Eigen::Matrix<double, -1, -1> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Transpose<Eigen::Matrix<double, -1, -1> > >, 2>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Transpose<const Eigen::Transpose<Eigen::Matrix<double, -1, -1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Transpose<const Eigen::Transpose<Eigen::Matrix<double, -1, -1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37:   required from ‘class Eigen::TransposeImpl<const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   required from ‘class Eigen::Transpose<const Eigen::Transpose<Eigen::Matrix<double, -1, -1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:207:26:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:37:0:   required from ‘Scalar stan::optimization::BFGSUpdate_HInv<Scalar, DimAtCompile>::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0:   required from ‘int stan::optimization::BFGSMinimizer<FunctorType, QNUpdateType, Scalar, DimAtCompile>::step() [with FunctorType = stan::optimization::ModelAdaptor<model_shrinkage_namespace::model_shrinkage, false>; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0:   required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage; bool jacobian = false]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:15:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, 1, -1, false> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Transpose<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, 1, -1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Transpose<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, 1, -1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37:   required from ‘class Eigen::TransposeImpl<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, 1, -1, false>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   required from ‘class Eigen::Transpose<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, 1, -1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:207:43:   required from ‘static void Eigen::internal::gemv_dense_selector<1, StorageOrder, BlasCompatible>::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, 1, -1, false>; Rhs = Eigen::Transpose<Eigen::Matrix<double, -1, -1> >; Dest = Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>; int StorageOrder = 1; bool BlasCompatible = true; typename Dest::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:388:34:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:37:0:   required from ‘Scalar stan::optimization::BFGSUpdate_HInv<Scalar, DimAtCompile>::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0:   required from ‘int stan::optimization::BFGSMinimizer<FunctorType, QNUpdateType, Scalar, DimAtCompile>::step() [with FunctorType = stan::optimization::ModelAdaptor<model_shrinkage_namespace::model_shrinkage, false>; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0:   required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage; bool jacobian = false]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:15:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator<Eigen::Block<const Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, -1, 1, true>, -1, 1, true> >’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8:   required from ‘struct Eigen::internal::evaluator<const Eigen::Block<const Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, -1, 1, true>, -1, 1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78:   required from ‘struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true> >, const Eigen::Block<const Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, -1, 1, true>, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8:   required from ‘struct Eigen::internal::evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true> >, const Eigen::Block<const Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, -1, 1, true>, -1, 1, true> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7:   required from ‘class Eigen::internal::redux_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true> >, const Eigen::Block<const Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, -1, 1, true>, -1, 1, true> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:414:17:   required from ‘typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true> >, const Eigen::Block<const Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, -1, 1, true>, -1, 1, true> >; typename Eigen::internal::traits<T>::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41:   required from ‘Derived& Eigen::PlainObjectBase<Derived>::_set_noalias(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Matrix<double, -1, -1, 1, -1, -1>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 0>; Derived = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19:   required from ‘Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Matrix<double, -1, -1, 1, -1, -1>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 0>; Derived = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Matrix<double, -1, -1, 1, -1, -1>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:29:18:   required from ‘Eigen::Matrix<typename stan::value_type<T>::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0> >; stan::require_eigen_vt<std::is_arithmetic, T>* <anonymous> = 0; typename stan::value_type<T>::type = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20:   required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0>; stan::require_eigen_t<T_desired>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
 1071 |     PacketAlignment = unpacket_traits<PacketScalar>::alignment,
      |                                                      ^~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator<Eigen::Block<const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, true> >’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8:   required from ‘struct Eigen::internal::evaluator<const Eigen::Block<const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:311:41:   required from ‘struct Eigen::internal::unary_evaluator<Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, true> >, Eigen::internal::IndexBased, double>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8:   required from ‘struct Eigen::internal::evaluator<Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, true> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8:   required from ‘struct Eigen::internal::evaluator<const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, true> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:41:   required from ‘struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, true> >, const Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8:   [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41:   required from ‘Derived& Eigen::PlainObjectBase<Derived>::_set_noalias(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Matrix<double, -1, -1, 1, -1, -1>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 0>; Derived = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19:   required from ‘Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Matrix<double, -1, -1, 1, -1, -1>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 0>; Derived = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Matrix<double, -1, -1, 1, -1, -1>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:29:18:   required from ‘Eigen::Matrix<typename stan::value_type<T>::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0> >; stan::require_eigen_vt<std::is_arithmetic, T>* <anonymous> = 0; typename stan::value_type<T>::type = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20:   required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0>; stan::require_eigen_t<T_desired>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::requirement<boost::concepts::failed************ Model::************>::failed() [with Model = boost::concepts::usage_requirements<boost::CopyConstructible<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > > >]’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept_check.hpp:167:5:   required from ‘struct boost::CopyConstructible<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/range/concepts.hpp:125:16:   required from ‘struct boost::range_detail::IncrementableIteratorConcept<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/range/concepts.hpp:147:16:   required from ‘struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:32:62:   required by substitution of ‘template<class Model> boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints<Model, (& Model::constraints)>*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:42:5:   required from ‘const bool boost::concepts::not_satisfied<boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > > >::value’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:45:51:   [ skipping 14 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/iterator/iterator_facade.hpp:982:3:   required from ‘typename boost::iterators::detail::enable_if_interoperable<Derived1, Derived2, typename boost::mpl::apply2<boost::iterators::detail::always_bool2, Derived1, Derived2>::type>::type boost::iterators::operator!=(const iterator_facade<Derived1, V1, TC1, Reference1, Difference1>&, const iterator_facade<Derived2, V2, TC2, Reference2, Difference2>&) [with Derived1 = transform_iterator<boost::algorithm::detail::copy_iterator_rangeF<std::__cxx11::basic_string<char>, __gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::use_default, boost::use_default>; V1 = std::__cxx11::basic_string<char>; TC1 = forward_traversal_tag; Reference1 = std::__cxx11::basic_string<char>; Difference1 = long int; Derived2 = transform_iterator<boost::algorithm::detail::copy_iterator_rangeF<std::__cxx11::basic_string<char>, __gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::use_default, boost::use_default>; V2 = std::__cxx11::basic_string<char>; TC2 = forward_traversal_tag; Reference2 = std::__cxx11::basic_string<char>; Difference2 = long int; typename detail::enable_if_interoperable<Derived1, Derived2, typename boost::mpl::apply2<detail::always_bool2, Derived1, Derived2>::type>::type = bool; typename boost::mpl::apply2<detail::always_bool2, Derived1, Derived2>::type = bool]’
/usr/include/c++/13/bits/stl_vector.h:1671:21:   required from ‘void std::vector<_Tp, _Alloc>::_M_range_initialize(_InputIterator, _InputIterator, std::input_iterator_tag) [with _InputIterator = boost::iterators::transform_iterator<boost::algorithm::detail::copy_iterator_rangeF<std::__cxx11::basic_string<char>, __gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::use_default, boost::use_default>; _Tp = std::__cxx11::basic_string<char>; _Alloc = std::allocator<std::__cxx11::basic_string<char> >]’
/usr/include/c++/13/bits/stl_vector.h:711:23:   required from ‘std::vector<_Tp, _Alloc>::vector(_InputIterator, _InputIterator, const allocator_type&) [with _InputIterator = boost::iterators::transform_iterator<boost::algorithm::detail::copy_iterator_rangeF<std::__cxx11::basic_string<char>, __gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::use_default, boost::use_default>; <template-parameter-2-2> = void; _Tp = std::__cxx11::basic_string<char>; _Alloc = std::allocator<std::__cxx11::basic_string<char> >; allocator_type = std::allocator<std::__cxx11::basic_string<char> >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/iter_find.hpp:186:31:   required from ‘SequenceSequenceT& boost::algorithm::iter_split(SequenceSequenceT&, RangeT&&, FinderT) [with SequenceSequenceT = std::vector<std::__cxx11::basic_string<char> >; RangeT = std::__cxx11::basic_string<char>&; FinderT = detail::token_finderF<detail::is_any_ofF<char> >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/split.hpp:158:50:   required from ‘SequenceSequenceT& boost::algorithm::split(SequenceSequenceT&, RangeT&&, PredicateT, token_compress_mode_type) [with SequenceSequenceT = std::vector<std::__cxx11::basic_string<char> >; RangeT = std::__cxx11::basic_string<char>&; PredicateT = detail::is_any_ofF<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/stan_csv_reader.hpp:19:17:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp:50:47: warning: ‘this’ pointer is null [-Wnonnull]
   50 |     static void failed() { ((Model*)0)->~Model(); }
      |                            ~~~~~~~~~~~~~~~~~~~^~
In file included from /home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept_check.hpp:31:
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/usage.hpp:20:5: note: in a call to non-static member function ‘boost::concepts::usage_requirements<Model>::~usage_requirements() [with Model = boost::CopyConstructible<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >]’
   20 |     ~usage_requirements() { ((Model*)0)->~Model(); }
      |     ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::requirement<boost::concepts::failed************ Model::************>::failed() [with Model = boost::concepts::usage_requirements<boost::Convertible<boost::iterators::random_access_traversal_tag, boost::iterators::incrementable_traversal_tag> >]’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept_check.hpp:208:5:   required from ‘struct boost::Convertible<boost::iterators::random_access_traversal_tag, boost::iterators::incrementable_traversal_tag>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:32:62:   required by substitution of ‘template<class Model> boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints<Model, (& Model::constraints)>*) [with Model = boost::Convertible<boost::iterators::random_access_traversal_tag, boost::iterators::incrementable_traversal_tag>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:42:5:   required from ‘const bool boost::concepts::not_satisfied<boost::Convertible<boost::iterators::random_access_traversal_tag, boost::iterators::incrementable_traversal_tag> >::value’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:45:51:   required from ‘struct boost::concepts::not_satisfied<boost::Convertible<boost::iterators::random_access_traversal_tag, boost::iterators::incrementable_traversal_tag> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp:72:8:   required from ‘struct boost::concepts::requirement_<void (*)(boost::Convertible<boost::iterators::random_access_traversal_tag, boost::iterators::incrementable_traversal_tag>)>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/iterator/iterator_concepts.hpp:114:7:   [ skipping 18 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/iterator/iterator_facade.hpp:982:3:   required from ‘typename boost::iterators::detail::enable_if_interoperable<Derived1, Derived2, typename boost::mpl::apply2<boost::iterators::detail::always_bool2, Derived1, Derived2>::type>::type boost::iterators::operator!=(const iterator_facade<Derived1, V1, TC1, Reference1, Difference1>&, const iterator_facade<Derived2, V2, TC2, Reference2, Difference2>&) [with Derived1 = transform_iterator<boost::algorithm::detail::copy_iterator_rangeF<std::__cxx11::basic_string<char>, __gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::use_default, boost::use_default>; V1 = std::__cxx11::basic_string<char>; TC1 = forward_traversal_tag; Reference1 = std::__cxx11::basic_string<char>; Difference1 = long int; Derived2 = transform_iterator<boost::algorithm::detail::copy_iterator_rangeF<std::__cxx11::basic_string<char>, __gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::use_default, boost::use_default>; V2 = std::__cxx11::basic_string<char>; TC2 = forward_traversal_tag; Reference2 = std::__cxx11::basic_string<char>; Difference2 = long int; typename detail::enable_if_interoperable<Derived1, Derived2, typename boost::mpl::apply2<detail::always_bool2, Derived1, Derived2>::type>::type = bool; typename boost::mpl::apply2<detail::always_bool2, Derived1, Derived2>::type = bool]’
/usr/include/c++/13/bits/stl_vector.h:1671:21:   required from ‘void std::vector<_Tp, _Alloc>::_M_range_initialize(_InputIterator, _InputIterator, std::input_iterator_tag) [with _InputIterator = boost::iterators::transform_iterator<boost::algorithm::detail::copy_iterator_rangeF<std::__cxx11::basic_string<char>, __gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::use_default, boost::use_default>; _Tp = std::__cxx11::basic_string<char>; _Alloc = std::allocator<std::__cxx11::basic_string<char> >]’
/usr/include/c++/13/bits/stl_vector.h:711:23:   required from ‘std::vector<_Tp, _Alloc>::vector(_InputIterator, _InputIterator, const allocator_type&) [with _InputIterator = boost::iterators::transform_iterator<boost::algorithm::detail::copy_iterator_rangeF<std::__cxx11::basic_string<char>, __gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::use_default, boost::use_default>; <template-parameter-2-2> = void; _Tp = std::__cxx11::basic_string<char>; _Alloc = std::allocator<std::__cxx11::basic_string<char> >; allocator_type = std::allocator<std::__cxx11::basic_string<char> >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/iter_find.hpp:186:31:   required from ‘SequenceSequenceT& boost::algorithm::iter_split(SequenceSequenceT&, RangeT&&, FinderT) [with SequenceSequenceT = std::vector<std::__cxx11::basic_string<char> >; RangeT = std::__cxx11::basic_string<char>&; FinderT = detail::token_finderF<detail::is_any_ofF<char> >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/split.hpp:158:50:   required from ‘SequenceSequenceT& boost::algorithm::split(SequenceSequenceT&, RangeT&&, PredicateT, token_compress_mode_type) [with SequenceSequenceT = std::vector<std::__cxx11::basic_string<char> >; RangeT = std::__cxx11::basic_string<char>&; PredicateT = detail::is_any_ofF<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/stan_csv_reader.hpp:19:17:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp:50:47: warning: ‘this’ pointer is null [-Wnonnull]
   50 |     static void failed() { ((Model*)0)->~Model(); }
      |                            ~~~~~~~~~~~~~~~~~~~^~
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/usage.hpp:20:5: note: in a call to non-static member function ‘boost::concepts::usage_requirements<Model>::~usage_requirements() [with Model = boost::Convertible<boost::iterators::random_access_traversal_tag, boost::iterators::incrementable_traversal_tag>]’
   20 |     ~usage_requirements() { ((Model*)0)->~Model(); }
      |     ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::requirement<boost::concepts::failed************ Model::************>::failed() [with Model = boost::Convertible<boost::iterators::random_access_traversal_tag, boost::iterators::incrementable_traversal_tag>]’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/iterator/iterator_concepts.hpp:114:7:   required from ‘struct boost::range_detail::IncrementableIteratorConcept<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/range/concepts.hpp:147:16:   required from ‘struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:32:62:   required by substitution of ‘template<class Model> boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints<Model, (& Model::constraints)>*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:42:5:   required from ‘const bool boost::concepts::not_satisfied<boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > > >::value’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:45:51:   required from ‘struct boost::concepts::not_satisfied<boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp:72:8:   [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/iterator/iterator_facade.hpp:982:3:   required from ‘typename boost::iterators::detail::enable_if_interoperable<Derived1, Derived2, typename boost::mpl::apply2<boost::iterators::detail::always_bool2, Derived1, Derived2>::type>::type boost::iterators::operator!=(const iterator_facade<Derived1, V1, TC1, Reference1, Difference1>&, const iterator_facade<Derived2, V2, TC2, Reference2, Difference2>&) [with Derived1 = transform_iterator<boost::algorithm::detail::copy_iterator_rangeF<std::__cxx11::basic_string<char>, __gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::use_default, boost::use_default>; V1 = std::__cxx11::basic_string<char>; TC1 = forward_traversal_tag; Reference1 = std::__cxx11::basic_string<char>; Difference1 = long int; Derived2 = transform_iterator<boost::algorithm::detail::copy_iterator_rangeF<std::__cxx11::basic_string<char>, __gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::use_default, boost::use_default>; V2 = std::__cxx11::basic_string<char>; TC2 = forward_traversal_tag; Reference2 = std::__cxx11::basic_string<char>; Difference2 = long int; typename detail::enable_if_interoperable<Derived1, Derived2, typename boost::mpl::apply2<detail::always_bool2, Derived1, Derived2>::type>::type = bool; typename boost::mpl::apply2<detail::always_bool2, Derived1, Derived2>::type = bool]’
/usr/include/c++/13/bits/stl_vector.h:1671:21:   required from ‘void std::vector<_Tp, _Alloc>::_M_range_initialize(_InputIterator, _InputIterator, std::input_iterator_tag) [with _InputIterator = boost::iterators::transform_iterator<boost::algorithm::detail::copy_iterator_rangeF<std::__cxx11::basic_string<char>, __gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::use_default, boost::use_default>; _Tp = std::__cxx11::basic_string<char>; _Alloc = std::allocator<std::__cxx11::basic_string<char> >]’
/usr/include/c++/13/bits/stl_vector.h:711:23:   required from ‘std::vector<_Tp, _Alloc>::vector(_InputIterator, _InputIterator, const allocator_type&) [with _InputIterator = boost::iterators::transform_iterator<boost::algorithm::detail::copy_iterator_rangeF<std::__cxx11::basic_string<char>, __gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::use_default, boost::use_default>; <template-parameter-2-2> = void; _Tp = std::__cxx11::basic_string<char>; _Alloc = std::allocator<std::__cxx11::basic_string<char> >; allocator_type = std::allocator<std::__cxx11::basic_string<char> >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/iter_find.hpp:186:31:   required from ‘SequenceSequenceT& boost::algorithm::iter_split(SequenceSequenceT&, RangeT&&, FinderT) [with SequenceSequenceT = std::vector<std::__cxx11::basic_string<char> >; RangeT = std::__cxx11::basic_string<char>&; FinderT = detail::token_finderF<detail::is_any_ofF<char> >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/split.hpp:158:50:   required from ‘SequenceSequenceT& boost::algorithm::split(SequenceSequenceT&, RangeT&&, PredicateT, token_compress_mode_type) [with SequenceSequenceT = std::vector<std::__cxx11::basic_string<char> >; RangeT = std::__cxx11::basic_string<char>&; PredicateT = detail::is_any_ofF<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/stan_csv_reader.hpp:19:17:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp:50:47: warning: ‘this’ pointer is null [-Wnonnull]
   50 |     static void failed() { ((Model*)0)->~Model(); }
      |                            ~~~~~~~~~~~~~~~~~~~^~
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function ‘boost::Convertible<X, Y>::~Convertible() [with X = boost::iterators::random_access_traversal_tag; Y = boost::iterators::incrementable_traversal_tag]’
   37 |       ~model()
      |       ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept_check.hpp:208:5: note: in expansion of macro ‘BOOST_CONCEPT_USAGE’
  208 |     BOOST_CONCEPT_USAGE(Convertible) {
      |     ^~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::requirement<boost::concepts::failed************ Model::************>::failed() [with Model = boost::concepts::usage_requirements<boost::range_detail::IncrementableIteratorConcept<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > > >]’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/range/concepts.hpp:136:13:   required from ‘struct boost::range_detail::IncrementableIteratorConcept<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/range/concepts.hpp:147:16:   required from ‘struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:32:62:   required by substitution of ‘template<class Model> boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints<Model, (& Model::constraints)>*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:42:5:   required from ‘const bool boost::concepts::not_satisfied<boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > > >::value’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:45:51:   required from ‘struct boost::concepts::not_satisfied<boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp:72:8:   [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/iterator/iterator_facade.hpp:982:3:   required from ‘typename boost::iterators::detail::enable_if_interoperable<Derived1, Derived2, typename boost::mpl::apply2<boost::iterators::detail::always_bool2, Derived1, Derived2>::type>::type boost::iterators::operator!=(const iterator_facade<Derived1, V1, TC1, Reference1, Difference1>&, const iterator_facade<Derived2, V2, TC2, Reference2, Difference2>&) [with Derived1 = transform_iterator<boost::algorithm::detail::copy_iterator_rangeF<std::__cxx11::basic_string<char>, __gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::use_default, boost::use_default>; V1 = std::__cxx11::basic_string<char>; TC1 = forward_traversal_tag; Reference1 = std::__cxx11::basic_string<char>; Difference1 = long int; Derived2 = transform_iterator<boost::algorithm::detail::copy_iterator_rangeF<std::__cxx11::basic_string<char>, __gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::use_default, boost::use_default>; V2 = std::__cxx11::basic_string<char>; TC2 = forward_traversal_tag; Reference2 = std::__cxx11::basic_string<char>; Difference2 = long int; typename detail::enable_if_interoperable<Derived1, Derived2, typename boost::mpl::apply2<detail::always_bool2, Derived1, Derived2>::type>::type = bool; typename boost::mpl::apply2<detail::always_bool2, Derived1, Derived2>::type = bool]’
/usr/include/c++/13/bits/stl_vector.h:1671:21:   required from ‘void std::vector<_Tp, _Alloc>::_M_range_initialize(_InputIterator, _InputIterator, std::input_iterator_tag) [with _InputIterator = boost::iterators::transform_iterator<boost::algorithm::detail::copy_iterator_rangeF<std::__cxx11::basic_string<char>, __gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::use_default, boost::use_default>; _Tp = std::__cxx11::basic_string<char>; _Alloc = std::allocator<std::__cxx11::basic_string<char> >]’
/usr/include/c++/13/bits/stl_vector.h:711:23:   required from ‘std::vector<_Tp, _Alloc>::vector(_InputIterator, _InputIterator, const allocator_type&) [with _InputIterator = boost::iterators::transform_iterator<boost::algorithm::detail::copy_iterator_rangeF<std::__cxx11::basic_string<char>, __gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::use_default, boost::use_default>; <template-parameter-2-2> = void; _Tp = std::__cxx11::basic_string<char>; _Alloc = std::allocator<std::__cxx11::basic_string<char> >; allocator_type = std::allocator<std::__cxx11::basic_string<char> >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/iter_find.hpp:186:31:   required from ‘SequenceSequenceT& boost::algorithm::iter_split(SequenceSequenceT&, RangeT&&, FinderT) [with SequenceSequenceT = std::vector<std::__cxx11::basic_string<char> >; RangeT = std::__cxx11::basic_string<char>&; FinderT = detail::token_finderF<detail::is_any_ofF<char> >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/split.hpp:158:50:   required from ‘SequenceSequenceT& boost::algorithm::split(SequenceSequenceT&, RangeT&&, PredicateT, token_compress_mode_type) [with SequenceSequenceT = std::vector<std::__cxx11::basic_string<char> >; RangeT = std::__cxx11::basic_string<char>&; PredicateT = detail::is_any_ofF<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/stan_csv_reader.hpp:19:17:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp:50:47: warning: ‘this’ pointer is null [-Wnonnull]
   50 |     static void failed() { ((Model*)0)->~Model(); }
      |                            ~~~~~~~~~~~~~~~~~~~^~
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/usage.hpp:20:5: note: in a call to non-static member function ‘boost::concepts::usage_requirements<Model>::~usage_requirements() [with Model = boost::range_detail::IncrementableIteratorConcept<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >]’
   20 |     ~usage_requirements() { ((Model*)0)->~Model(); }
      |     ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::requirement<boost::concepts::failed************ Model::************>::failed() [with Model = boost::concepts::usage_requirements<boost::EqualityComparable<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > > >]’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept_check.hpp:233:5:   required from ‘struct boost::EqualityComparable<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/range/concepts.hpp:147:16:   required from ‘struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:32:62:   required by substitution of ‘template<class Model> boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints<Model, (& Model::constraints)>*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:42:5:   required from ‘const bool boost::concepts::not_satisfied<boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > > >::value’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:45:51:   required from ‘struct boost::concepts::not_satisfied<boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp:72:8:   [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/iterator/iterator_facade.hpp:982:3:   required from ‘typename boost::iterators::detail::enable_if_interoperable<Derived1, Derived2, typename boost::mpl::apply2<boost::iterators::detail::always_bool2, Derived1, Derived2>::type>::type boost::iterators::operator!=(const iterator_facade<Derived1, V1, TC1, Reference1, Difference1>&, const iterator_facade<Derived2, V2, TC2, Reference2, Difference2>&) [with Derived1 = transform_iterator<boost::algorithm::detail::copy_iterator_rangeF<std::__cxx11::basic_string<char>, __gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::use_default, boost::use_default>; V1 = std::__cxx11::basic_string<char>; TC1 = forward_traversal_tag; Reference1 = std::__cxx11::basic_string<char>; Difference1 = long int; Derived2 = transform_iterator<boost::algorithm::detail::copy_iterator_rangeF<std::__cxx11::basic_string<char>, __gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::use_default, boost::use_default>; V2 = std::__cxx11::basic_string<char>; TC2 = forward_traversal_tag; Reference2 = std::__cxx11::basic_string<char>; Difference2 = long int; typename detail::enable_if_interoperable<Derived1, Derived2, typename boost::mpl::apply2<detail::always_bool2, Derived1, Derived2>::type>::type = bool; typename boost::mpl::apply2<detail::always_bool2, Derived1, Derived2>::type = bool]’
/usr/include/c++/13/bits/stl_vector.h:1671:21:   required from ‘void std::vector<_Tp, _Alloc>::_M_range_initialize(_InputIterator, _InputIterator, std::input_iterator_tag) [with _InputIterator = boost::iterators::transform_iterator<boost::algorithm::detail::copy_iterator_rangeF<std::__cxx11::basic_string<char>, __gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::use_default, boost::use_default>; _Tp = std::__cxx11::basic_string<char>; _Alloc = std::allocator<std::__cxx11::basic_string<char> >]’
/usr/include/c++/13/bits/stl_vector.h:711:23:   required from ‘std::vector<_Tp, _Alloc>::vector(_InputIterator, _InputIterator, const allocator_type&) [with _InputIterator = boost::iterators::transform_iterator<boost::algorithm::detail::copy_iterator_rangeF<std::__cxx11::basic_string<char>, __gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::use_default, boost::use_default>; <template-parameter-2-2> = void; _Tp = std::__cxx11::basic_string<char>; _Alloc = std::allocator<std::__cxx11::basic_string<char> >; allocator_type = std::allocator<std::__cxx11::basic_string<char> >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/iter_find.hpp:186:31:   required from ‘SequenceSequenceT& boost::algorithm::iter_split(SequenceSequenceT&, RangeT&&, FinderT) [with SequenceSequenceT = std::vector<std::__cxx11::basic_string<char> >; RangeT = std::__cxx11::basic_string<char>&; FinderT = detail::token_finderF<detail::is_any_ofF<char> >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/split.hpp:158:50:   required from ‘SequenceSequenceT& boost::algorithm::split(SequenceSequenceT&, RangeT&&, PredicateT, token_compress_mode_type) [with SequenceSequenceT = std::vector<std::__cxx11::basic_string<char> >; RangeT = std::__cxx11::basic_string<char>&; PredicateT = detail::is_any_ofF<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/stan_csv_reader.hpp:19:17:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp:50:47: warning: ‘this’ pointer is null [-Wnonnull]
   50 |     static void failed() { ((Model*)0)->~Model(); }
      |                            ~~~~~~~~~~~~~~~~~~~^~
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/usage.hpp:20:5: note: in a call to non-static member function ‘boost::concepts::usage_requirements<Model>::~usage_requirements() [with Model = boost::EqualityComparable<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >]’
   20 |     ~usage_requirements() { ((Model*)0)->~Model(); }
      |     ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::requirement<boost::concepts::failed************ Model::************>::failed() [with Model = boost::concepts::usage_requirements<boost::Convertible<boost::iterators::random_access_traversal_tag, boost::iterators::single_pass_traversal_tag> >]’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept_check.hpp:208:5:   required from ‘struct boost::Convertible<boost::iterators::random_access_traversal_tag, boost::iterators::single_pass_traversal_tag>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:32:62:   required by substitution of ‘template<class Model> boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints<Model, (& Model::constraints)>*) [with Model = boost::Convertible<boost::iterators::random_access_traversal_tag, boost::iterators::single_pass_traversal_tag>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:42:5:   required from ‘const bool boost::concepts::not_satisfied<boost::Convertible<boost::iterators::random_access_traversal_tag, boost::iterators::single_pass_traversal_tag> >::value’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:45:51:   required from ‘struct boost::concepts::not_satisfied<boost::Convertible<boost::iterators::random_access_traversal_tag, boost::iterators::single_pass_traversal_tag> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp:72:8:   required from ‘struct boost::concepts::requirement_<void (*)(boost::Convertible<boost::iterators::random_access_traversal_tag, boost::iterators::single_pass_traversal_tag>)>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/range/concepts.hpp:152:13:   [ skipping 17 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/iterator/iterator_facade.hpp:982:3:   required from ‘typename boost::iterators::detail::enable_if_interoperable<Derived1, Derived2, typename boost::mpl::apply2<boost::iterators::detail::always_bool2, Derived1, Derived2>::type>::type boost::iterators::operator!=(const iterator_facade<Derived1, V1, TC1, Reference1, Difference1>&, const iterator_facade<Derived2, V2, TC2, Reference2, Difference2>&) [with Derived1 = transform_iterator<boost::algorithm::detail::copy_iterator_rangeF<std::__cxx11::basic_string<char>, __gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::use_default, boost::use_default>; V1 = std::__cxx11::basic_string<char>; TC1 = forward_traversal_tag; Reference1 = std::__cxx11::basic_string<char>; Difference1 = long int; Derived2 = transform_iterator<boost::algorithm::detail::copy_iterator_rangeF<std::__cxx11::basic_string<char>, __gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::use_default, boost::use_default>; V2 = std::__cxx11::basic_string<char>; TC2 = forward_traversal_tag; Reference2 = std::__cxx11::basic_string<char>; Difference2 = long int; typename detail::enable_if_interoperable<Derived1, Derived2, typename boost::mpl::apply2<detail::always_bool2, Derived1, Derived2>::type>::type = bool; typename boost::mpl::apply2<detail::always_bool2, Derived1, Derived2>::type = bool]’
/usr/include/c++/13/bits/stl_vector.h:1671:21:   required from ‘void std::vector<_Tp, _Alloc>::_M_range_initialize(_InputIterator, _InputIterator, std::input_iterator_tag) [with _InputIterator = boost::iterators::transform_iterator<boost::algorithm::detail::copy_iterator_rangeF<std::__cxx11::basic_string<char>, __gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::use_default, boost::use_default>; _Tp = std::__cxx11::basic_string<char>; _Alloc = std::allocator<std::__cxx11::basic_string<char> >]’
/usr/include/c++/13/bits/stl_vector.h:711:23:   required from ‘std::vector<_Tp, _Alloc>::vector(_InputIterator, _InputIterator, const allocator_type&) [with _InputIterator = boost::iterators::transform_iterator<boost::algorithm::detail::copy_iterator_rangeF<std::__cxx11::basic_string<char>, __gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::use_default, boost::use_default>; <template-parameter-2-2> = void; _Tp = std::__cxx11::basic_string<char>; _Alloc = std::allocator<std::__cxx11::basic_string<char> >; allocator_type = std::allocator<std::__cxx11::basic_string<char> >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/iter_find.hpp:186:31:   required from ‘SequenceSequenceT& boost::algorithm::iter_split(SequenceSequenceT&, RangeT&&, FinderT) [with SequenceSequenceT = std::vector<std::__cxx11::basic_string<char> >; RangeT = std::__cxx11::basic_string<char>&; FinderT = detail::token_finderF<detail::is_any_ofF<char> >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/split.hpp:158:50:   required from ‘SequenceSequenceT& boost::algorithm::split(SequenceSequenceT&, RangeT&&, PredicateT, token_compress_mode_type) [with SequenceSequenceT = std::vector<std::__cxx11::basic_string<char> >; RangeT = std::__cxx11::basic_string<char>&; PredicateT = detail::is_any_ofF<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/stan_csv_reader.hpp:19:17:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp:50:47: warning: ‘this’ pointer is null [-Wnonnull]
   50 |     static void failed() { ((Model*)0)->~Model(); }
      |                            ~~~~~~~~~~~~~~~~~~~^~
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/usage.hpp:20:5: note: in a call to non-static member function ‘boost::concepts::usage_requirements<Model>::~usage_requirements() [with Model = boost::Convertible<boost::iterators::random_access_traversal_tag, boost::iterators::single_pass_traversal_tag>]’
   20 |     ~usage_requirements() { ((Model*)0)->~Model(); }
      |     ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::requirement<boost::concepts::failed************ Model::************>::failed() [with Model = boost::Convertible<boost::iterators::random_access_traversal_tag, boost::iterators::single_pass_traversal_tag>]’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/range/concepts.hpp:152:13:   required from ‘struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:32:62:   required by substitution of ‘template<class Model> boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints<Model, (& Model::constraints)>*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:42:5:   required from ‘const bool boost::concepts::not_satisfied<boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > > >::value’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:45:51:   required from ‘struct boost::concepts::not_satisfied<boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp:72:8:   required from ‘struct boost::concepts::requirement_<void (*)(boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >)>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/range/concepts.hpp:278:9:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/iterator/iterator_facade.hpp:982:3:   required from ‘typename boost::iterators::detail::enable_if_interoperable<Derived1, Derived2, typename boost::mpl::apply2<boost::iterators::detail::always_bool2, Derived1, Derived2>::type>::type boost::iterators::operator!=(const iterator_facade<Derived1, V1, TC1, Reference1, Difference1>&, const iterator_facade<Derived2, V2, TC2, Reference2, Difference2>&) [with Derived1 = transform_iterator<boost::algorithm::detail::copy_iterator_rangeF<std::__cxx11::basic_string<char>, __gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::use_default, boost::use_default>; V1 = std::__cxx11::basic_string<char>; TC1 = forward_traversal_tag; Reference1 = std::__cxx11::basic_string<char>; Difference1 = long int; Derived2 = transform_iterator<boost::algorithm::detail::copy_iterator_rangeF<std::__cxx11::basic_string<char>, __gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::use_default, boost::use_default>; V2 = std::__cxx11::basic_string<char>; TC2 = forward_traversal_tag; Reference2 = std::__cxx11::basic_string<char>; Difference2 = long int; typename detail::enable_if_interoperable<Derived1, Derived2, typename boost::mpl::apply2<detail::always_bool2, Derived1, Derived2>::type>::type = bool; typename boost::mpl::apply2<detail::always_bool2, Derived1, Derived2>::type = bool]’
/usr/include/c++/13/bits/stl_vector.h:1671:21:   required from ‘void std::vector<_Tp, _Alloc>::_M_range_initialize(_InputIterator, _InputIterator, std::input_iterator_tag) [with _InputIterator = boost::iterators::transform_iterator<boost::algorithm::detail::copy_iterator_rangeF<std::__cxx11::basic_string<char>, __gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::use_default, boost::use_default>; _Tp = std::__cxx11::basic_string<char>; _Alloc = std::allocator<std::__cxx11::basic_string<char> >]’
/usr/include/c++/13/bits/stl_vector.h:711:23:   required from ‘std::vector<_Tp, _Alloc>::vector(_InputIterator, _InputIterator, const allocator_type&) [with _InputIterator = boost::iterators::transform_iterator<boost::algorithm::detail::copy_iterator_rangeF<std::__cxx11::basic_string<char>, __gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::use_default, boost::use_default>; <template-parameter-2-2> = void; _Tp = std::__cxx11::basic_string<char>; _Alloc = std::allocator<std::__cxx11::basic_string<char> >; allocator_type = std::allocator<std::__cxx11::basic_string<char> >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/iter_find.hpp:186:31:   required from ‘SequenceSequenceT& boost::algorithm::iter_split(SequenceSequenceT&, RangeT&&, FinderT) [with SequenceSequenceT = std::vector<std::__cxx11::basic_string<char> >; RangeT = std::__cxx11::basic_string<char>&; FinderT = detail::token_finderF<detail::is_any_ofF<char> >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/split.hpp:158:50:   required from ‘SequenceSequenceT& boost::algorithm::split(SequenceSequenceT&, RangeT&&, PredicateT, token_compress_mode_type) [with SequenceSequenceT = std::vector<std::__cxx11::basic_string<char> >; RangeT = std::__cxx11::basic_string<char>&; PredicateT = detail::is_any_ofF<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/stan_csv_reader.hpp:19:17:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp:50:47: warning: ‘this’ pointer is null [-Wnonnull]
   50 |     static void failed() { ((Model*)0)->~Model(); }
      |                            ~~~~~~~~~~~~~~~~~~~^~
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function ‘boost::Convertible<X, Y>::~Convertible() [with X = boost::iterators::random_access_traversal_tag; Y = boost::iterators::single_pass_traversal_tag]’
   37 |       ~model()
      |       ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept_check.hpp:208:5: note: in expansion of macro ‘BOOST_CONCEPT_USAGE’
  208 |     BOOST_CONCEPT_USAGE(Convertible) {
      |     ^~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::requirement<boost::concepts::failed************ Model::************>::failed() [with Model = boost::concepts::usage_requirements<boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > > >]’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/range/concepts.hpp:158:13:   required from ‘struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:32:62:   required by substitution of ‘template<class Model> boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints<Model, (& Model::constraints)>*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:42:5:   required from ‘const bool boost::concepts::not_satisfied<boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > > >::value’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:45:51:   required from ‘struct boost::concepts::not_satisfied<boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp:72:8:   required from ‘struct boost::concepts::requirement_<void (*)(boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >)>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/range/concepts.hpp:278:9:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/iterator/iterator_facade.hpp:982:3:   required from ‘typename boost::iterators::detail::enable_if_interoperable<Derived1, Derived2, typename boost::mpl::apply2<boost::iterators::detail::always_bool2, Derived1, Derived2>::type>::type boost::iterators::operator!=(const iterator_facade<Derived1, V1, TC1, Reference1, Difference1>&, const iterator_facade<Derived2, V2, TC2, Reference2, Difference2>&) [with Derived1 = transform_iterator<boost::algorithm::detail::copy_iterator_rangeF<std::__cxx11::basic_string<char>, __gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::use_default, boost::use_default>; V1 = std::__cxx11::basic_string<char>; TC1 = forward_traversal_tag; Reference1 = std::__cxx11::basic_string<char>; Difference1 = long int; Derived2 = transform_iterator<boost::algorithm::detail::copy_iterator_rangeF<std::__cxx11::basic_string<char>, __gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::use_default, boost::use_default>; V2 = std::__cxx11::basic_string<char>; TC2 = forward_traversal_tag; Reference2 = std::__cxx11::basic_string<char>; Difference2 = long int; typename detail::enable_if_interoperable<Derived1, Derived2, typename boost::mpl::apply2<detail::always_bool2, Derived1, Derived2>::type>::type = bool; typename boost::mpl::apply2<detail::always_bool2, Derived1, Derived2>::type = bool]’
/usr/include/c++/13/bits/stl_vector.h:1671:21:   required from ‘void std::vector<_Tp, _Alloc>::_M_range_initialize(_InputIterator, _InputIterator, std::input_iterator_tag) [with _InputIterator = boost::iterators::transform_iterator<boost::algorithm::detail::copy_iterator_rangeF<std::__cxx11::basic_string<char>, __gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::use_default, boost::use_default>; _Tp = std::__cxx11::basic_string<char>; _Alloc = std::allocator<std::__cxx11::basic_string<char> >]’
/usr/include/c++/13/bits/stl_vector.h:711:23:   required from ‘std::vector<_Tp, _Alloc>::vector(_InputIterator, _InputIterator, const allocator_type&) [with _InputIterator = boost::iterators::transform_iterator<boost::algorithm::detail::copy_iterator_rangeF<std::__cxx11::basic_string<char>, __gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::use_default, boost::use_default>; <template-parameter-2-2> = void; _Tp = std::__cxx11::basic_string<char>; _Alloc = std::allocator<std::__cxx11::basic_string<char> >; allocator_type = std::allocator<std::__cxx11::basic_string<char> >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/iter_find.hpp:186:31:   required from ‘SequenceSequenceT& boost::algorithm::iter_split(SequenceSequenceT&, RangeT&&, FinderT) [with SequenceSequenceT = std::vector<std::__cxx11::basic_string<char> >; RangeT = std::__cxx11::basic_string<char>&; FinderT = detail::token_finderF<detail::is_any_ofF<char> >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/split.hpp:158:50:   required from ‘SequenceSequenceT& boost::algorithm::split(SequenceSequenceT&, RangeT&&, PredicateT, token_compress_mode_type) [with SequenceSequenceT = std::vector<std::__cxx11::basic_string<char> >; RangeT = std::__cxx11::basic_string<char>&; PredicateT = detail::is_any_ofF<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/stan_csv_reader.hpp:19:17:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp:50:47: warning: ‘this’ pointer is null [-Wnonnull]
   50 |     static void failed() { ((Model*)0)->~Model(); }
      |                            ~~~~~~~~~~~~~~~~~~~^~
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/usage.hpp:20:5: note: in a call to non-static member function ‘boost::concepts::usage_requirements<Model>::~usage_requirements() [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >]’
   20 |     ~usage_requirements() { ((Model*)0)->~Model(); }
      |     ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::requirement<boost::concepts::failed************ Model::************>::failed() [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >]’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/range/concepts.hpp:278:9:   required from ‘struct boost::SinglePassRangeConcept<const boost::iterator_range<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:32:62:   required by substitution of ‘template<class Model> boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints<Model, (& Model::constraints)>*) [with Model = boost::SinglePassRangeConcept<const boost::iterator_range<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > > >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:42:5:   required from ‘const bool boost::concepts::not_satisfied<boost::SinglePassRangeConcept<const boost::iterator_range<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > > > >::value’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:45:51:   required from ‘struct boost::concepts::not_satisfied<boost::SinglePassRangeConcept<const boost::iterator_range<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp:72:8:   required from ‘struct boost::concepts::requirement_<void (*)(boost::SinglePassRangeConcept<const boost::iterator_range<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > > >)>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/range/algorithm/equal.hpp:174:13:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/iterator/iterator_facade.hpp:982:3:   required from ‘typename boost::iterators::detail::enable_if_interoperable<Derived1, Derived2, typename boost::mpl::apply2<boost::iterators::detail::always_bool2, Derived1, Derived2>::type>::type boost::iterators::operator!=(const iterator_facade<Derived1, V1, TC1, Reference1, Difference1>&, const iterator_facade<Derived2, V2, TC2, Reference2, Difference2>&) [with Derived1 = transform_iterator<boost::algorithm::detail::copy_iterator_rangeF<std::__cxx11::basic_string<char>, __gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::use_default, boost::use_default>; V1 = std::__cxx11::basic_string<char>; TC1 = forward_traversal_tag; Reference1 = std::__cxx11::basic_string<char>; Difference1 = long int; Derived2 = transform_iterator<boost::algorithm::detail::copy_iterator_rangeF<std::__cxx11::basic_string<char>, __gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::use_default, boost::use_default>; V2 = std::__cxx11::basic_string<char>; TC2 = forward_traversal_tag; Reference2 = std::__cxx11::basic_string<char>; Difference2 = long int; typename detail::enable_if_interoperable<Derived1, Derived2, typename boost::mpl::apply2<detail::always_bool2, Derived1, Derived2>::type>::type = bool; typename boost::mpl::apply2<detail::always_bool2, Derived1, Derived2>::type = bool]’
/usr/include/c++/13/bits/stl_vector.h:1671:21:   required from ‘void std::vector<_Tp, _Alloc>::_M_range_initialize(_InputIterator, _InputIterator, std::input_iterator_tag) [with _InputIterator = boost::iterators::transform_iterator<boost::algorithm::detail::copy_iterator_rangeF<std::__cxx11::basic_string<char>, __gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::use_default, boost::use_default>; _Tp = std::__cxx11::basic_string<char>; _Alloc = std::allocator<std::__cxx11::basic_string<char> >]’
/usr/include/c++/13/bits/stl_vector.h:711:23:   required from ‘std::vector<_Tp, _Alloc>::vector(_InputIterator, _InputIterator, const allocator_type&) [with _InputIterator = boost::iterators::transform_iterator<boost::algorithm::detail::copy_iterator_rangeF<std::__cxx11::basic_string<char>, __gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::use_default, boost::use_default>; <template-parameter-2-2> = void; _Tp = std::__cxx11::basic_string<char>; _Alloc = std::allocator<std::__cxx11::basic_string<char> >; allocator_type = std::allocator<std::__cxx11::basic_string<char> >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/iter_find.hpp:186:31:   required from ‘SequenceSequenceT& boost::algorithm::iter_split(SequenceSequenceT&, RangeT&&, FinderT) [with SequenceSequenceT = std::vector<std::__cxx11::basic_string<char> >; RangeT = std::__cxx11::basic_string<char>&; FinderT = detail::token_finderF<detail::is_any_ofF<char> >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/split.hpp:158:50:   required from ‘SequenceSequenceT& boost::algorithm::split(SequenceSequenceT&, RangeT&&, PredicateT, token_compress_mode_type) [with SequenceSequenceT = std::vector<std::__cxx11::basic_string<char> >; RangeT = std::__cxx11::basic_string<char>&; PredicateT = detail::is_any_ofF<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/stan_csv_reader.hpp:19:17:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp:50:47: warning: ‘this’ pointer is null [-Wnonnull]
   50 |     static void failed() { ((Model*)0)->~Model(); }
      |                            ~~~~~~~~~~~~~~~~~~~^~
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function ‘boost::range_detail::SinglePassIteratorConcept<Iterator>::~SinglePassIteratorConcept() [with Iterator = __gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> >]’
   37 |       ~model()
      |       ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/range/concepts.hpp:158:13: note: in expansion of macro ‘BOOST_CONCEPT_USAGE’
  158 |             BOOST_CONCEPT_USAGE(SinglePassIteratorConcept)
      |             ^~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::requirement<boost::concepts::failed************ Model::************>::failed() [with Model = boost::concepts::usage_requirements<boost::SinglePassRangeConcept<const boost::iterator_range<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > > > >]’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/range/concepts.hpp:284:9:   required from ‘struct boost::SinglePassRangeConcept<const boost::iterator_range<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:32:62:   required by substitution of ‘template<class Model> boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints<Model, (& Model::constraints)>*) [with Model = boost::SinglePassRangeConcept<const boost::iterator_range<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > > >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:42:5:   required from ‘const bool boost::concepts::not_satisfied<boost::SinglePassRangeConcept<const boost::iterator_range<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > > > >::value’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:45:51:   required from ‘struct boost::concepts::not_satisfied<boost::SinglePassRangeConcept<const boost::iterator_range<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp:72:8:   required from ‘struct boost::concepts::requirement_<void (*)(boost::SinglePassRangeConcept<const boost::iterator_range<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > > >)>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/range/algorithm/equal.hpp:174:13:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/iterator/iterator_facade.hpp:982:3:   required from ‘typename boost::iterators::detail::enable_if_interoperable<Derived1, Derived2, typename boost::mpl::apply2<boost::iterators::detail::always_bool2, Derived1, Derived2>::type>::type boost::iterators::operator!=(const iterator_facade<Derived1, V1, TC1, Reference1, Difference1>&, const iterator_facade<Derived2, V2, TC2, Reference2, Difference2>&) [with Derived1 = transform_iterator<boost::algorithm::detail::copy_iterator_rangeF<std::__cxx11::basic_string<char>, __gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::use_default, boost::use_default>; V1 = std::__cxx11::basic_string<char>; TC1 = forward_traversal_tag; Reference1 = std::__cxx11::basic_string<char>; Difference1 = long int; Derived2 = transform_iterator<boost::algorithm::detail::copy_iterator_rangeF<std::__cxx11::basic_string<char>, __gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::use_default, boost::use_default>; V2 = std::__cxx11::basic_string<char>; TC2 = forward_traversal_tag; Reference2 = std::__cxx11::basic_string<char>; Difference2 = long int; typename detail::enable_if_interoperable<Derived1, Derived2, typename boost::mpl::apply2<detail::always_bool2, Derived1, Derived2>::type>::type = bool; typename boost::mpl::apply2<detail::always_bool2, Derived1, Derived2>::type = bool]’
/usr/include/c++/13/bits/stl_vector.h:1671:21:   required from ‘void std::vector<_Tp, _Alloc>::_M_range_initialize(_InputIterator, _InputIterator, std::input_iterator_tag) [with _InputIterator = boost::iterators::transform_iterator<boost::algorithm::detail::copy_iterator_rangeF<std::__cxx11::basic_string<char>, __gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::use_default, boost::use_default>; _Tp = std::__cxx11::basic_string<char>; _Alloc = std::allocator<std::__cxx11::basic_string<char> >]’
/usr/include/c++/13/bits/stl_vector.h:711:23:   required from ‘std::vector<_Tp, _Alloc>::vector(_InputIterator, _InputIterator, const allocator_type&) [with _InputIterator = boost::iterators::transform_iterator<boost::algorithm::detail::copy_iterator_rangeF<std::__cxx11::basic_string<char>, __gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::use_default, boost::use_default>; <template-parameter-2-2> = void; _Tp = std::__cxx11::basic_string<char>; _Alloc = std::allocator<std::__cxx11::basic_string<char> >; allocator_type = std::allocator<std::__cxx11::basic_string<char> >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/iter_find.hpp:186:31:   required from ‘SequenceSequenceT& boost::algorithm::iter_split(SequenceSequenceT&, RangeT&&, FinderT) [with SequenceSequenceT = std::vector<std::__cxx11::basic_string<char> >; RangeT = std::__cxx11::basic_string<char>&; FinderT = detail::token_finderF<detail::is_any_ofF<char> >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/split.hpp:158:50:   required from ‘SequenceSequenceT& boost::algorithm::split(SequenceSequenceT&, RangeT&&, PredicateT, token_compress_mode_type) [with SequenceSequenceT = std::vector<std::__cxx11::basic_string<char> >; RangeT = std::__cxx11::basic_string<char>&; PredicateT = detail::is_any_ofF<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/stan_csv_reader.hpp:19:17:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp:50:47: warning: ‘this’ pointer is null [-Wnonnull]
   50 |     static void failed() { ((Model*)0)->~Model(); }
      |                            ~~~~~~~~~~~~~~~~~~~^~
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/usage.hpp:20:5: note: in a call to non-static member function ‘boost::concepts::usage_requirements<Model>::~usage_requirements() [with Model = boost::SinglePassRangeConcept<const boost::iterator_range<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > > >]’
   20 |     ~usage_requirements() { ((Model*)0)->~Model(); }
      |     ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::requirement<boost::concepts::failed************ Model::************>::failed() [with Model = boost::SinglePassRangeConcept<const boost::iterator_range<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > > >]’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/range/algorithm/equal.hpp:174:13:   required from ‘bool boost::range::equal(const SinglePassRange1&, const SinglePassRange2&) [with SinglePassRange1 = boost::iterator_range<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >; SinglePassRange2 = boost::iterator_range<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/range/iterator_range_core.hpp:644:32:   required from ‘bool boost::operator==(const iterator_range<IteratorT>&, const iterator_range<Iterator2T>&) [with Iterator1T = __gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> >; Iterator2T = __gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/find_iterator.hpp:359:32:   required from ‘bool boost::algorithm::split_iterator<IteratorT>::equal(const boost::algorithm::split_iterator<IteratorT>&) const [with IteratorT = __gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/iterator/iterator_facade.hpp:649:26:   required from ‘static bool boost::iterators::iterator_core_access::equal(const Facade1&, const Facade2&, mpl_::true_) [with Facade1 = boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >; Facade2 = boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >; mpl_::true_ = mpl_::bool_<true>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/iterator/iterator_facade.hpp:981:3:   required from ‘typename boost::iterators::detail::enable_if_interoperable<Derived1, Derived2, typename boost::mpl::apply2<boost::iterators::detail::always_bool2, Derived1, Derived2>::type>::type boost::iterators::operator==(const iterator_facade<Derived1, V1, TC1, Reference1, Difference1>&, const iterator_facade<Derived2, V2, TC2, Reference2, Difference2>&) [with Derived1 = boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >; V1 = const boost::iterator_range<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >; TC1 = forward_traversal_tag; Reference1 = const boost::iterator_range<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >&; Difference1 = long int; Derived2 = boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >; V2 = const boost::iterator_range<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >; TC2 = forward_traversal_tag; Reference2 = const boost::iterator_range<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >&; Difference2 = long int; typename detail::enable_if_interoperable<Derived1, Derived2, typename boost::mpl::apply2<detail::always_bool2, Derived1, Derived2>::type>::type = bool; typename boost::mpl::apply2<detail::always_bool2, Derived1, Derived2>::type = bool]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/iterator/iterator_adaptor.hpp:305:29:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/iterator/iterator_facade.hpp:982:3:   required from ‘typename boost::iterators::detail::enable_if_interoperable<Derived1, Derived2, typename boost::mpl::apply2<boost::iterators::detail::always_bool2, Derived1, Derived2>::type>::type boost::iterators::operator!=(const iterator_facade<Derived1, V1, TC1, Reference1, Difference1>&, const iterator_facade<Derived2, V2, TC2, Reference2, Difference2>&) [with Derived1 = transform_iterator<boost::algorithm::detail::copy_iterator_rangeF<std::__cxx11::basic_string<char>, __gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::use_default, boost::use_default>; V1 = std::__cxx11::basic_string<char>; TC1 = forward_traversal_tag; Reference1 = std::__cxx11::basic_string<char>; Difference1 = long int; Derived2 = transform_iterator<boost::algorithm::detail::copy_iterator_rangeF<std::__cxx11::basic_string<char>, __gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::use_default, boost::use_default>; V2 = std::__cxx11::basic_string<char>; TC2 = forward_traversal_tag; Reference2 = std::__cxx11::basic_string<char>; Difference2 = long int; typename detail::enable_if_interoperable<Derived1, Derived2, typename boost::mpl::apply2<detail::always_bool2, Derived1, Derived2>::type>::type = bool; typename boost::mpl::apply2<detail::always_bool2, Derived1, Derived2>::type = bool]’
/usr/include/c++/13/bits/stl_vector.h:1671:21:   required from ‘void std::vector<_Tp, _Alloc>::_M_range_initialize(_InputIterator, _InputIterator, std::input_iterator_tag) [with _InputIterator = boost::iterators::transform_iterator<boost::algorithm::detail::copy_iterator_rangeF<std::__cxx11::basic_string<char>, __gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::use_default, boost::use_default>; _Tp = std::__cxx11::basic_string<char>; _Alloc = std::allocator<std::__cxx11::basic_string<char> >]’
/usr/include/c++/13/bits/stl_vector.h:711:23:   required from ‘std::vector<_Tp, _Alloc>::vector(_InputIterator, _InputIterator, const allocator_type&) [with _InputIterator = boost::iterators::transform_iterator<boost::algorithm::detail::copy_iterator_rangeF<std::__cxx11::basic_string<char>, __gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::use_default, boost::use_default>; <template-parameter-2-2> = void; _Tp = std::__cxx11::basic_string<char>; _Alloc = std::allocator<std::__cxx11::basic_string<char> >; allocator_type = std::allocator<std::__cxx11::basic_string<char> >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/iter_find.hpp:186:31:   required from ‘SequenceSequenceT& boost::algorithm::iter_split(SequenceSequenceT&, RangeT&&, FinderT) [with SequenceSequenceT = std::vector<std::__cxx11::basic_string<char> >; RangeT = std::__cxx11::basic_string<char>&; FinderT = detail::token_finderF<detail::is_any_ofF<char> >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/split.hpp:158:50:   required from ‘SequenceSequenceT& boost::algorithm::split(SequenceSequenceT&, RangeT&&, PredicateT, token_compress_mode_type) [with SequenceSequenceT = std::vector<std::__cxx11::basic_string<char> >; RangeT = std::__cxx11::basic_string<char>&; PredicateT = detail::is_any_ofF<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/stan_csv_reader.hpp:19:17:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp:50:47: warning: ‘this’ pointer is null [-Wnonnull]
   50 |     static void failed() { ((Model*)0)->~Model(); }
      |                            ~~~~~~~~~~~~~~~~~~~^~
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function ‘boost::SinglePassRangeConcept<T>::~SinglePassRangeConcept() [with T = const boost::iterator_range<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >]’
   37 |       ~model()
      |       ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/range/concepts.hpp:284:9: note: in expansion of macro ‘BOOST_CONCEPT_USAGE’
  284 |         BOOST_CONCEPT_USAGE(SinglePassRangeConcept)
      |         ^~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, -1, false>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, -1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, -1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:172:103:   required from ‘class Eigen::internal::BlockImpl_dense<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, -1, false, false>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   required from ‘class Eigen::BlockImpl<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, -1, false, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81:   required from ‘class Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, -1, false>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:457:74:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/TriangularMatrix.h:856:103:   required from ‘static void Eigen::internal::Assignment<DstXprType, SrcXprType, Functor, Eigen::internal::Triangular2Dense>::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; SrcXprType = Eigen::TriangularView<const Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Functor = Eigen::internal::add_assign_op<double, double>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; Src = Eigen::TriangularView<const Eigen::Product<Eigen::CwiseBinaryOp<scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Func = add_assign_op<double, double>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing<Src>::value), void*>::type) [with Dst = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; Src = Eigen::TriangularView<const Eigen::Product<Eigen::CwiseBinaryOp<scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Func = add_assign_op<double, double>; typename enable_if<(! evaluator_assume_aliasing<Src>::value), void*>::type = void*; typename evaluator_traits<SrcXprType>::Shape = Eigen::TriangularShape]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/EigenBase.h:145:18:   required from ‘Derived& Eigen::DenseBase<Derived>::operator+=(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::TriangularView<const Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Derived = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply_lower_tri_self_transpose.hpp:31:0:   required from ‘auto stan::math::multiply_lower_tri_self_transpose(const T&) [with T = var_value<Eigen::Matrix<double, -1, -1> >; stan::require_rev_matrix_t<T>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cov_matrix_constrain.hpp:59:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   56 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true>, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true>, 3>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true>, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34:   [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/TriangularMatrix.h:856:103:   required from ‘static void Eigen::internal::Assignment<DstXprType, SrcXprType, Functor, Eigen::internal::Triangular2Dense>::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; SrcXprType = Eigen::TriangularView<const Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Functor = Eigen::internal::add_assign_op<double, double>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; Src = Eigen::TriangularView<const Eigen::Product<Eigen::CwiseBinaryOp<scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Func = add_assign_op<double, double>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing<Src>::value), void*>::type) [with Dst = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; Src = Eigen::TriangularView<const Eigen::Product<Eigen::CwiseBinaryOp<scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Func = add_assign_op<double, double>; typename enable_if<(! evaluator_assume_aliasing<Src>::value), void*>::type = void*; typename evaluator_traits<SrcXprType>::Shape = Eigen::TriangularShape]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/EigenBase.h:145:18:   required from ‘Derived& Eigen::DenseBase<Derived>::operator+=(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::TriangularView<const Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Derived = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply_lower_tri_self_transpose.hpp:31:0:   required from ‘auto stan::math::multiply_lower_tri_self_transpose(const T&) [with T = var_value<Eigen::Matrix<double, -1, -1> >; stan::require_rev_matrix_t<T>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cov_matrix_constrain.hpp:59:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, -1, false>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, -1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, -1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:172:103:   required from ‘class Eigen::internal::BlockImpl_dense<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, -1, false, false>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   required from ‘class Eigen::BlockImpl<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, -1, false, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81:   required from ‘class Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, -1, false>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:462:74:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/TriangularMatrix.h:856:103:   required from ‘static void Eigen::internal::Assignment<DstXprType, SrcXprType, Functor, Eigen::internal::Triangular2Dense>::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; SrcXprType = Eigen::TriangularView<const Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Functor = Eigen::internal::add_assign_op<double, double>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; Src = Eigen::TriangularView<const Eigen::Product<Eigen::CwiseBinaryOp<scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Func = add_assign_op<double, double>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing<Src>::value), void*>::type) [with Dst = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; Src = Eigen::TriangularView<const Eigen::Product<Eigen::CwiseBinaryOp<scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Func = add_assign_op<double, double>; typename enable_if<(! evaluator_assume_aliasing<Src>::value), void*>::type = void*; typename evaluator_traits<SrcXprType>::Shape = Eigen::TriangularShape]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/EigenBase.h:145:18:   required from ‘Derived& Eigen::DenseBase<Derived>::operator+=(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::TriangularView<const Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Derived = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply_lower_tri_self_transpose.hpp:31:0:   required from ‘auto stan::math::multiply_lower_tri_self_transpose(const T&) [with T = var_value<Eigen::Matrix<double, -1, -1> >; stan::require_rev_matrix_t<T>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cov_matrix_constrain.hpp:59:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, -1, false> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, -1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, -1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, -1, false>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, -1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:462:59:   required from ‘static void Eigen::internal::triangular_product_impl<Mode, LhsIsTriangular, Lhs, false, Rhs, false>::run(Dest&, const Lhs&, const Rhs&, const typename Dest::Scalar&) [with Dest = Eigen::Matrix<double, -1, -1>; int Mode = 1; bool LhsIsTriangular = false; Lhs = Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >; Rhs = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; typename Dest::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:783:113:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/TriangularMatrix.h:856:103:   required from ‘static void Eigen::internal::Assignment<DstXprType, SrcXprType, Functor, Eigen::internal::Triangular2Dense>::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; SrcXprType = Eigen::TriangularView<const Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Functor = Eigen::internal::add_assign_op<double, double>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; Src = Eigen::TriangularView<const Eigen::Product<Eigen::CwiseBinaryOp<scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Func = add_assign_op<double, double>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing<Src>::value), void*>::type) [with Dst = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; Src = Eigen::TriangularView<const Eigen::Product<Eigen::CwiseBinaryOp<scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Func = add_assign_op<double, double>; typename enable_if<(! evaluator_assume_aliasing<Src>::value), void*>::type = void*; typename evaluator_traits<SrcXprType>::Shape = Eigen::TriangularShape]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/EigenBase.h:145:18:   required from ‘Derived& Eigen::DenseBase<Derived>::operator+=(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::TriangularView<const Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Derived = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply_lower_tri_self_transpose.hpp:31:0:   required from ‘auto stan::math::multiply_lower_tri_self_transpose(const T&) [with T = var_value<Eigen::Matrix<double, -1, -1> >; stan::require_rev_matrix_t<T>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cov_matrix_constrain.hpp:59:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator<Eigen::Block<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, -1, 1, false> >’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:780:20:   required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, -1, 1, false>; SrcXprType = Eigen::CwiseBinaryOp<scalar_quotient_op<double, double>, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, -1, 1, false>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > >; Functor = assign_op<double, double>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31:   required from ‘static void Eigen::internal::Assignment<DstXprType, SrcXprType, Functor, Eigen::internal::Dense2Dense, Weak>::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, -1, 1, false>; SrcXprType = Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, -1, 1, false>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > >; Functor = Eigen::internal::assign_op<double, double>; Weak = void]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, -1, 1, false>; Src = Eigen::CwiseBinaryOp<scalar_quotient_op<double, double>, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, -1, 1, false>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > >; Func = assign_op<double, double>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing<Src>::value), void*>::type) [with Dst = Eigen::Block<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, -1, 1, false>; Src = Eigen::CwiseBinaryOp<scalar_quotient_op<double, double>, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, -1, 1, false>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > >; Func = assign_op<double, double>; typename enable_if<(! evaluator_assume_aliasing<Src>::value), void*>::type = void*; typename evaluator_traits<SrcXprType>::Shape = Eigen::DenseShape]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:18:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Block<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, -1, 1, false>; Src = Eigen::CwiseBinaryOp<scalar_quotient_op<double, double>, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, -1, 1, false>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Assign.h:66:28:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:363:59:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, CoeffVectorType&) [with MatrixType = Eigen::Matrix<double, -1, -1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:449:31:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
 1071 |     PacketAlignment = unpacket_traits<PacketScalar>::alignment,
      |                                                      ^~~~~~~~~
In file included from /home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/Core:337:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointMatrixVector.h: In instantiation of ‘static void Eigen::internal::selfadjoint_matrix_vector_product<Scalar, Index, StorageOrder, UpLo, ConjugateLhs, ConjugateRhs, Version>::run(Index, const Scalar*, Index, const Scalar*, Scalar*, Scalar) [with Scalar = double; Index = long int; int StorageOrder = 0; int UpLo = 1; bool ConjugateLhs = false; bool ConjugateRhs = false; int Version = 0]’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointMatrixVector.h:229:7:   required from ‘static void Eigen::internal::selfadjoint_product_impl<Lhs, LhsMode, false, Rhs, 0, true>::run(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>; Lhs = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; int LhsMode = 17; Rhs = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >; Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:805:109:   required from ‘static void Eigen::internal::generic_product_impl<Lhs, Rhs, Eigen::SelfAdjointShape, Eigen::DenseShape, ProductTag>::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>; Lhs = Eigen::SelfAdjointView<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1>; Rhs = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >; int ProductTag = 7; Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361:27:   required from ‘static void Eigen::internal::generic_product_impl_base<Lhs, Rhs, Derived>::scaleAndAddTo(Dst&, const Lhs&, const Rhs&, const Scalar&) [with Dst = Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>; Lhs = Eigen::SelfAdjointView<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1>; Rhs = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >; Derived = Eigen::internal::generic_product_impl<Eigen::SelfAdjointView<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >, Eigen::SelfAdjointShape, Eigen::DenseShape, 7>; Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349:33:   required from ‘static void Eigen::internal::generic_product_impl_base<Lhs, Rhs, Derived>::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>; Lhs = Eigen::SelfAdjointView<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1>; Rhs = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >; Derived = Eigen::internal::generic_product_impl<Eigen::SelfAdjointView<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >, Eigen::SelfAdjointShape, Eigen::DenseShape, 7>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43:   required from ‘static void Eigen::internal::Assignment<DstXprType, Eigen::Product<Lhs, Rhs, Options>, Eigen::internal::assign_op<Scalar, Scalar>, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op<Scalar, Scalar>&) [with DstXprType = Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>; Lhs = Eigen::SelfAdjointView<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1>; Rhs = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >; int Options = 0; Scalar = double; SrcXprType = Eigen::Product<Eigen::SelfAdjointView<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >, 0>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:369:35:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, CoeffVectorType&) [with MatrixType = Eigen::Matrix<double, -1, -1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:449:31:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointMatrixVector.h:62:121: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   62 |   conj_helper<Packet,Packet,NumTraits<Scalar>::IsComplex && EIGEN_LOGICAL_XOR(ConjugateLhs,  IsRowMajor), ConjugateRhs> pcj0;
      |                                                                                                                         ^~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointMatrixVector.h:62:121: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointMatrixVector.h:63:121: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   63 |   conj_helper<Packet,Packet,NumTraits<Scalar>::IsComplex && EIGEN_LOGICAL_XOR(ConjugateLhs, !IsRowMajor), ConjugateRhs> pcj1;
      |                                                                                                                         ^~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointMatrixVector.h:63:121: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>, 2>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7:   required from ‘class Eigen::internal::BlockImpl_dense<const Eigen::Matrix<double, -1, -1>, -1, 1, false, true>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::HouseholderSequence<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   56 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false> >, 2>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37:   required from ‘class Eigen::TransposeImpl<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   required from ‘class Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:23:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:361:25:   required from ‘static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix<double, -1, -1>; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:526:51:   required from ‘Eigen::LDLT<_MatrixType, _UpLo>& Eigen::LDLT<MatrixType, UpLo>::compute(const Eigen::EigenBase<OtherDerived>&) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>; int _UpLo = 1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:120:14:   required from ‘Eigen::LDLT<MatrixType, UpLo>::LDLT(const Eigen::EigenBase<OtherDerived>&) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>; int _UpLo = 1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:683:10:   required from ‘const Eigen::LDLT<typename Eigen::DenseBase<Derived>::PlainObject> Eigen::MatrixBase<Derived>::ldlt() const [with Derived = Eigen::Matrix<double, -1, -1>; typename Eigen::DenseBase<Derived>::PlainObject = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:45:67:   required from ‘void stan::math::check_pos_definite(const char*, const char*, const EigMat&) [with EigMat = Eigen::Matrix<double, -1, -1>; stan::require_matrix_t<T>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:21:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false> >, const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>, -1, 1, true> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false> >, const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>, -1, 1, true> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false> >, const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>, -1, 1, true> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false> >, const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>, -1, 1, true>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false> >, const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>, -1, 1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:56:   required from ‘static Eigen::internal::dot_nocheck<T, U, true>::ResScalar Eigen::internal::dot_nocheck<T, U, true>::run(const Eigen::MatrixBase<Derived>&, const Eigen::MatrixBase<U>&) [with T = Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false>; U = Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>, -1, 1, true>; ResScalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:361:25:   required from ‘static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix<double, -1, -1>; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:526:51:   required from ‘Eigen::LDLT<_MatrixType, _UpLo>& Eigen::LDLT<MatrixType, UpLo>::compute(const Eigen::EigenBase<OtherDerived>&) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>; int _UpLo = 1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:120:14:   required from ‘Eigen::LDLT<MatrixType, UpLo>::LDLT(const Eigen::EigenBase<OtherDerived>&) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>; int _UpLo = 1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:683:10:   required from ‘const Eigen::LDLT<typename Eigen::DenseBase<Derived>::PlainObject> Eigen::MatrixBase<Derived>::ldlt() const [with Derived = Eigen::Matrix<double, -1, -1>; typename Eigen::DenseBase<Derived>::PlainObject = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:45:67:   required from ‘void stan::math::check_pos_definite(const char*, const char*, const EigMat&) [with EigMat = Eigen::Matrix<double, -1, -1>; stan::require_matrix_t<T>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:21:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, 1, -1, false> >, const Eigen::Block<const Eigen::Block<const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, -1, 1, false>, -1, 1, true> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, 1, -1, false> >, const Eigen::Block<const Eigen::Block<const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, -1, 1, false>, -1, 1, true> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, 1, -1, false> >, const Eigen::Block<const Eigen::Block<const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, -1, 1, false>, -1, 1, true> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, 1, -1, false> >, const Eigen::Block<const Eigen::Block<const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, -1, 1, false>, -1, 1, true>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, 1, -1, false> >, const Eigen::Block<const Eigen::Block<const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, -1, 1, false>, -1, 1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:56:   required from ‘static Eigen::internal::dot_nocheck<T, U, true>::ResScalar Eigen::internal::dot_nocheck<T, U, true>::run(const Eigen::MatrixBase<Derived>&, const Eigen::MatrixBase<U>&) [with T = Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, 1, -1, false>; U = Eigen::Block<const Eigen::Block<const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, -1, 1, false>, -1, 1, true>; ResScalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:37:0:   required from ‘Scalar stan::optimization::BFGSUpdate_HInv<Scalar, DimAtCompile>::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0:   required from ‘int stan::optimization::BFGSMinimizer<FunctorType, QNUpdateType, Scalar, DimAtCompile>::step() [with FunctorType = stan::optimization::ModelAdaptor<model_shrinkage_namespace::model_shrinkage, false>; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0:   required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage; bool jacobian = false]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:15:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, 1, -1, false>, 1, -1, true> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, 1, -1, false>, 1, -1, true> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, 1, -1, false>, 1, -1, true> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37:   required from ‘class Eigen::TransposeImpl<const Eigen::Block<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, 1, -1, false>, 1, -1, true>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   required from ‘class Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, 1, -1, false>, 1, -1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:23:   required from ‘static Eigen::internal::dot_nocheck<T, U, true>::ResScalar Eigen::internal::dot_nocheck<T, U, true>::run(const Eigen::MatrixBase<Derived>&, const Eigen::MatrixBase<U>&) [with T = Eigen::Block<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, 1, -1, false>, 1, -1, true>; U = Eigen::Block<const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, -1, 1, false>; ResScalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:37:0:   required from ‘Scalar stan::optimization::BFGSUpdate_HInv<Scalar, DimAtCompile>::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0:   required from ‘int stan::optimization::BFGSMinimizer<FunctorType, QNUpdateType, Scalar, DimAtCompile>::step() [with FunctorType = stan::optimization::ModelAdaptor<model_shrinkage_namespace::model_shrinkage, false>; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0:   required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage; bool jacobian = false]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:15:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, 1, -1, false>, 1, -1, true> >, const Eigen::Block<const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, -1, 1, false> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, 1, -1, false>, 1, -1, true> >, const Eigen::Block<const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, -1, 1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, 1, -1, false>, 1, -1, true> >, const Eigen::Block<const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, -1, 1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, 1, -1, false>, 1, -1, true> >, const Eigen::Block<const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, -1, 1, false>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, 1, -1, false>, 1, -1, true> >, const Eigen::Block<const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, -1, 1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:56:   required from ‘static Eigen::internal::dot_nocheck<T, U, true>::ResScalar Eigen::internal::dot_nocheck<T, U, true>::run(const Eigen::MatrixBase<Derived>&, const Eigen::MatrixBase<U>&) [with T = Eigen::Block<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, 1, -1, false>, 1, -1, true>; U = Eigen::Block<const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, -1, 1, false>; ResScalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:37:0:   required from ‘Scalar stan::optimization::BFGSUpdate_HInv<Scalar, DimAtCompile>::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0:   required from ‘int stan::optimization::BFGSMinimizer<FunctorType, QNUpdateType, Scalar, DimAtCompile>::step() [with FunctorType = stan::optimization::ModelAdaptor<model_shrinkage_namespace::model_shrinkage, false>; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0:   required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage; bool jacobian = false]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:15:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> > >, 2>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Transpose<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Transpose<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37:   required from ‘class Eigen::TransposeImpl<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   required from ‘class Eigen::Transpose<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/BlasUtil.h:506:13:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:37:0:   required from ‘Scalar stan::optimization::BFGSUpdate_HInv<Scalar, DimAtCompile>::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0:   required from ‘int stan::optimization::BFGSMinimizer<FunctorType, QNUpdateType, Scalar, DimAtCompile>::step() [with FunctorType = stan::optimization::ModelAdaptor<model_shrinkage_namespace::model_shrinkage, false>; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0:   required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage; bool jacobian = false]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:15:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h: In instantiation of ‘struct Eigen::internal::gemm_pack_rhs<double, long int, Eigen::internal::const_blas_data_mapper<double, long int, 1>, 4, 1, false, false>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:81:75:   required from ‘static void Eigen::internal::general_matrix_matrix_product<Index, LhsScalar, LhsStorageOrder, ConjugateLhs, RhsScalar, RhsStorageOrder, ConjugateRhs, 0, ResInnerStride>::run(Index, Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, Index, ResScalar, Eigen::internal::level3_blocking<LhsScalar, RhsScalar>&, Eigen::internal::GemmParallelInfo<Index>*) [with Index = long int; LhsScalar = double; int LhsStorageOrder = 0; bool ConjugateLhs = false; RhsScalar = double; int RhsStorageOrder = 1; bool ConjugateRhs = false; int ResInnerStride = 1; ResScalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:230:14:   required from ‘void Eigen::internal::gemm_functor<Scalar, Index, Gemm, Lhs, Rhs, Dest, BlockingType>::operator()(Index, Index, Index, Index, Eigen::internal::GemmParallelInfo<Index>*) const [with Scalar = double; Index = long int; Gemm = Eigen::internal::general_matrix_matrix_product<long int, double, 0, false, double, 1, false, 0, 1>; Lhs = Eigen::Matrix<double, -1, -1>; Rhs = Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >; Dest = Eigen::Matrix<double, -1, -1>; BlockingType = Eigen::internal::gemm_blocking_space<0, double, double, -1, -1, -1, 1, false>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/Parallelizer.h:114:7:   required from ‘void Eigen::internal::parallelize_gemm(const Functor&, Index, Index, Index, bool) [with bool Condition = true; Functor = gemm_functor<double, long int, general_matrix_matrix_product<long int, double, 0, false, double, 1, false, 0, 1>, Eigen::Matrix<double, -1, -1>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, Eigen::Matrix<double, -1, -1>, gemm_blocking_space<0, double, double, -1, -1, -1, 1, false> >; Index = long int]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:509:9:   required from ‘static void Eigen::internal::generic_product_impl<Lhs, Rhs, Eigen::DenseShape, Eigen::DenseShape, 8>::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Matrix<double, -1, -1>; Lhs = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >; Rhs = Eigen::Transpose<Eigen::Matrix<double, -1, -1> >; Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:445:20:   required from ‘static void Eigen::internal::generic_product_impl<Lhs, Rhs, Eigen::DenseShape, Eigen::DenseShape, 8>::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix<double, -1, -1>; Lhs = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >; Rhs = Eigen::Transpose<Eigen::Matrix<double, -1, -1> >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:37:0:   required from ‘Scalar stan::optimization::BFGSUpdate_HInv<Scalar, DimAtCompile>::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0:   required from ‘int stan::optimization::BFGSMinimizer<FunctorType, QNUpdateType, Scalar, DimAtCompile>::step() [with FunctorType = stan::optimization::ModelAdaptor<model_shrinkage_namespace::model_shrinkage, false>; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0:   required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage; bool jacobian = false]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:15:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2504:50: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
 2504 |   typedef typename unpacket_traits<Packet>::half HalfPacket;
      |                                                  ^~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2505:82: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
 2505 |   typedef typename unpacket_traits<typename unpacket_traits<Packet>::half>::half QuarterPacket;
      |                                                                                  ^~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2505:82: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2508:56: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
 2508 |          HalfPacketSize = unpacket_traits<HalfPacket>::size,
      |                                                        ^~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2508:56: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2509:70: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
 2509 |                  QuarterPacketSize = unpacket_traits<QuarterPacket>::size};
      |                                                                      ^~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2509:70: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2509:70: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Product<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false> >, 0>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Product<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false> >, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Product<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false> >, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7:   required from ‘class Eigen::internal::dense_product_base<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false> >, 0, 7>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7:   required from ‘class Eigen::ProductImpl<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false> >, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false> >, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:332:45:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/run_adaptive_sampler.hpp:57:0:   required from ‘void stan::services::util::run_adaptive_sampler(Sampler&, Model&, std::vector<double>&, int, int, int, int, bool, RNG&, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, size_t, size_t) [with Sampler = stan::mcmc::adapt_dense_e_nuts<model_shrinkage_namespace::model_shrinkage, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> > >; Model = model_shrinkage_namespace::model_shrinkage; RNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; size_t = long unsigned int]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:97:0:   required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:150:0:   required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:638:0:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:15:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   56 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, false>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, false>, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, false>, 3>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, false>, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/run_adaptive_sampler.hpp:57:0:   required from ‘void stan::services::util::run_adaptive_sampler(Sampler&, Model&, std::vector<double>&, int, int, int, int, bool, RNG&, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, size_t, size_t) [with Sampler = stan::mcmc::adapt_dense_e_nuts<model_shrinkage_namespace::model_shrinkage, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> > >; Model = model_shrinkage_namespace::model_shrinkage; RNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; size_t = long unsigned int]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:97:0:   required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:150:0:   required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:638:0:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:15:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false>, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false>, 3>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false>, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/run_adaptive_sampler.hpp:57:0:   required from ‘void stan::services::util::run_adaptive_sampler(Sampler&, Model&, std::vector<double>&, int, int, int, int, bool, RNG&, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, size_t, size_t) [with Sampler = stan::mcmc::adapt_dense_e_nuts<model_shrinkage_namespace::model_shrinkage, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> > >; Model = model_shrinkage_namespace::model_shrinkage; RNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; size_t = long unsigned int]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:97:0:   required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:150:0:   required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:638:0:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:15:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 3>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/run_adaptive_sampler.hpp:57:0:   required from ‘void stan::services::util::run_adaptive_sampler(Sampler&, Model&, std::vector<double>&, int, int, int, int, bool, RNG&, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, size_t, size_t) [with Sampler = stan::mcmc::adapt_dense_e_nuts<model_shrinkage_namespace::model_shrinkage, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> > >; Model = model_shrinkage_namespace::model_shrinkage; RNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; size_t = long unsigned int]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:97:0:   required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:150:0:   required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:638:0:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:15:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false> >, 2>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Transpose<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Transpose<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37:   required from ‘class Eigen::TransposeImpl<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   required from ‘class Eigen::Transpose<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:332:58:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/run_adaptive_sampler.hpp:57:0:   required from ‘void stan::services::util::run_adaptive_sampler(Sampler&, Model&, std::vector<double>&, int, int, int, int, bool, RNG&, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, size_t, size_t) [with Sampler = stan::mcmc::adapt_dense_e_nuts<model_shrinkage_namespace::model_shrinkage, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> > >; Model = model_shrinkage_namespace::model_shrinkage; RNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; size_t = long unsigned int]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:97:0:   required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:150:0:   required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:638:0:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:15:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Product<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, Eigen::Transpose<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false> >, 0>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Product<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, Eigen::Transpose<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false> >, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Product<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, Eigen::Transpose<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false> >, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7:   required from ‘class Eigen::internal::dense_product_base<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, Eigen::Transpose<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false> >, 0, 7>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7:   required from ‘class Eigen::ProductImpl<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, Eigen::Transpose<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false> >, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, Eigen::Transpose<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false> >, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:332:45:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/run_adaptive_sampler.hpp:57:0:   required from ‘void stan::services::util::run_adaptive_sampler(Sampler&, Model&, std::vector<double>&, int, int, int, int, bool, RNG&, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, size_t, size_t) [with Sampler = stan::mcmc::adapt_dense_e_nuts<model_shrinkage_namespace::model_shrinkage, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> > >; Model = model_shrinkage_namespace::model_shrinkage; RNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; size_t = long unsigned int]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:97:0:   required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:150:0:   required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:638:0:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:15:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true> >, const Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, -1, 1, true> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true> >, const Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, -1, 1, true> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true> >, const Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, -1, 1, true> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true> >, const Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, -1, 1, true>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true> >, const Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, -1, 1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:606:52:   required from ‘const Eigen::internal::product_evaluator<Eigen::Product<Lhs, Rhs, 1>, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::CoeffReturnType Eigen::internal::product_evaluator<Eigen::Product<Lhs, Rhs, 1>, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::coeff(Eigen::Index, Eigen::Index) const [with Lhs = Eigen::Matrix<double, -1, -1, 1, -1, -1>; Rhs = Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >; int ProductTag = 8; typename Eigen::internal::traits<typename Eigen::Product<Lhs, Rhs, 1>::Lhs>::Scalar = double; typename Eigen::Product<Lhs, Rhs, 1>::Lhs = Eigen::Matrix<double, -1, -1, 1, -1, -1>; typename Eigen::internal::traits<typename Eigen::Product<Lhs, Rhs, 1>::Rhs>::Scalar = double; typename Eigen::Product<Lhs, Rhs, 1>::Rhs = Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >; CoeffReturnType = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:654:63:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41:   required from ‘Derived& Eigen::PlainObjectBase<Derived>::_set_noalias(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Matrix<double, -1, -1, 1, -1, -1>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 0>; Derived = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19:   required from ‘Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Matrix<double, -1, -1, 1, -1, -1>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 0>; Derived = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Matrix<double, -1, -1, 1, -1, -1>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:29:18:   required from ‘Eigen::Matrix<typename stan::value_type<T>::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0> >; stan::require_eigen_vt<std::is_arithmetic, T>* <anonymous> = 0; typename stan::value_type<T>::type = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20:   required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0>; stan::require_eigen_t<T_desired>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/usage.hpp: In instantiation of ‘boost::concepts::usage_requirements<Model>::~usage_requirements() [with Model = boost::CopyConstructible<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >]’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp:50:47:   required from ‘static void boost::concepts::requirement<boost::concepts::failed************ Model::************>::failed() [with Model = boost::concepts::usage_requirements<boost::CopyConstructible<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > > >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept_check.hpp:167:5:   required from ‘struct boost::CopyConstructible<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/range/concepts.hpp:125:16:   required from ‘struct boost::range_detail::IncrementableIteratorConcept<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/range/concepts.hpp:147:16:   required from ‘struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:32:62:   required by substitution of ‘template<class Model> boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints<Model, (& Model::constraints)>*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:42:5:   [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/iterator/iterator_facade.hpp:982:3:   required from ‘typename boost::iterators::detail::enable_if_interoperable<Derived1, Derived2, typename boost::mpl::apply2<boost::iterators::detail::always_bool2, Derived1, Derived2>::type>::type boost::iterators::operator!=(const iterator_facade<Derived1, V1, TC1, Reference1, Difference1>&, const iterator_facade<Derived2, V2, TC2, Reference2, Difference2>&) [with Derived1 = transform_iterator<boost::algorithm::detail::copy_iterator_rangeF<std::__cxx11::basic_string<char>, __gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::use_default, boost::use_default>; V1 = std::__cxx11::basic_string<char>; TC1 = forward_traversal_tag; Reference1 = std::__cxx11::basic_string<char>; Difference1 = long int; Derived2 = transform_iterator<boost::algorithm::detail::copy_iterator_rangeF<std::__cxx11::basic_string<char>, __gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::use_default, boost::use_default>; V2 = std::__cxx11::basic_string<char>; TC2 = forward_traversal_tag; Reference2 = std::__cxx11::basic_string<char>; Difference2 = long int; typename detail::enable_if_interoperable<Derived1, Derived2, typename boost::mpl::apply2<detail::always_bool2, Derived1, Derived2>::type>::type = bool; typename boost::mpl::apply2<detail::always_bool2, Derived1, Derived2>::type = bool]’
/usr/include/c++/13/bits/stl_vector.h:1671:21:   required from ‘void std::vector<_Tp, _Alloc>::_M_range_initialize(_InputIterator, _InputIterator, std::input_iterator_tag) [with _InputIterator = boost::iterators::transform_iterator<boost::algorithm::detail::copy_iterator_rangeF<std::__cxx11::basic_string<char>, __gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::use_default, boost::use_default>; _Tp = std::__cxx11::basic_string<char>; _Alloc = std::allocator<std::__cxx11::basic_string<char> >]’
/usr/include/c++/13/bits/stl_vector.h:711:23:   required from ‘std::vector<_Tp, _Alloc>::vector(_InputIterator, _InputIterator, const allocator_type&) [with _InputIterator = boost::iterators::transform_iterator<boost::algorithm::detail::copy_iterator_rangeF<std::__cxx11::basic_string<char>, __gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::use_default, boost::use_default>; <template-parameter-2-2> = void; _Tp = std::__cxx11::basic_string<char>; _Alloc = std::allocator<std::__cxx11::basic_string<char> >; allocator_type = std::allocator<std::__cxx11::basic_string<char> >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/iter_find.hpp:186:31:   required from ‘SequenceSequenceT& boost::algorithm::iter_split(SequenceSequenceT&, RangeT&&, FinderT) [with SequenceSequenceT = std::vector<std::__cxx11::basic_string<char> >; RangeT = std::__cxx11::basic_string<char>&; FinderT = detail::token_finderF<detail::is_any_ofF<char> >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/split.hpp:158:50:   required from ‘SequenceSequenceT& boost::algorithm::split(SequenceSequenceT&, RangeT&&, PredicateT, token_compress_mode_type) [with SequenceSequenceT = std::vector<std::__cxx11::basic_string<char> >; RangeT = std::__cxx11::basic_string<char>&; PredicateT = detail::is_any_ofF<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/stan_csv_reader.hpp:19:17:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/usage.hpp:20:48: warning: ‘this’ pointer is null [-Wnonnull]
   20 |     ~usage_requirements() { ((Model*)0)->~Model(); }
      |                             ~~~~~~~~~~~~~~~~~~~^~
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function ‘boost::CopyConstructible<TT>::~CopyConstructible() [with TT = __gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> >]’
   37 |       ~model()
      |       ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept_check.hpp:167:5: note: in expansion of macro ‘BOOST_CONCEPT_USAGE’
  167 |     BOOST_CONCEPT_USAGE(CopyConstructible) {
      |     ^~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/usage.hpp: In instantiation of ‘boost::concepts::usage_requirements<Model>::~usage_requirements() [with Model = boost::Convertible<boost::iterators::random_access_traversal_tag, boost::iterators::incrementable_traversal_tag>]’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp:50:47:   required from ‘static void boost::concepts::requirement<boost::concepts::failed************ Model::************>::failed() [with Model = boost::concepts::usage_requirements<boost::Convertible<boost::iterators::random_access_traversal_tag, boost::iterators::incrementable_traversal_tag> >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept_check.hpp:208:5:   required from ‘struct boost::Convertible<boost::iterators::random_access_traversal_tag, boost::iterators::incrementable_traversal_tag>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:32:62:   required by substitution of ‘template<class Model> boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints<Model, (& Model::constraints)>*) [with Model = boost::Convertible<boost::iterators::random_access_traversal_tag, boost::iterators::incrementable_traversal_tag>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:42:5:   required from ‘const bool boost::concepts::not_satisfied<boost::Convertible<boost::iterators::random_access_traversal_tag, boost::iterators::incrementable_traversal_tag> >::value’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:45:51:   required from ‘struct boost::concepts::not_satisfied<boost::Convertible<boost::iterators::random_access_traversal_tag, boost::iterators::incrementable_traversal_tag> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp:72:8:   [ skipping 19 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/iterator/iterator_facade.hpp:982:3:   required from ‘typename boost::iterators::detail::enable_if_interoperable<Derived1, Derived2, typename boost::mpl::apply2<boost::iterators::detail::always_bool2, Derived1, Derived2>::type>::type boost::iterators::operator!=(const iterator_facade<Derived1, V1, TC1, Reference1, Difference1>&, const iterator_facade<Derived2, V2, TC2, Reference2, Difference2>&) [with Derived1 = transform_iterator<boost::algorithm::detail::copy_iterator_rangeF<std::__cxx11::basic_string<char>, __gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::use_default, boost::use_default>; V1 = std::__cxx11::basic_string<char>; TC1 = forward_traversal_tag; Reference1 = std::__cxx11::basic_string<char>; Difference1 = long int; Derived2 = transform_iterator<boost::algorithm::detail::copy_iterator_rangeF<std::__cxx11::basic_string<char>, __gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::use_default, boost::use_default>; V2 = std::__cxx11::basic_string<char>; TC2 = forward_traversal_tag; Reference2 = std::__cxx11::basic_string<char>; Difference2 = long int; typename detail::enable_if_interoperable<Derived1, Derived2, typename boost::mpl::apply2<detail::always_bool2, Derived1, Derived2>::type>::type = bool; typename boost::mpl::apply2<detail::always_bool2, Derived1, Derived2>::type = bool]’
/usr/include/c++/13/bits/stl_vector.h:1671:21:   required from ‘void std::vector<_Tp, _Alloc>::_M_range_initialize(_InputIterator, _InputIterator, std::input_iterator_tag) [with _InputIterator = boost::iterators::transform_iterator<boost::algorithm::detail::copy_iterator_rangeF<std::__cxx11::basic_string<char>, __gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::use_default, boost::use_default>; _Tp = std::__cxx11::basic_string<char>; _Alloc = std::allocator<std::__cxx11::basic_string<char> >]’
/usr/include/c++/13/bits/stl_vector.h:711:23:   required from ‘std::vector<_Tp, _Alloc>::vector(_InputIterator, _InputIterator, const allocator_type&) [with _InputIterator = boost::iterators::transform_iterator<boost::algorithm::detail::copy_iterator_rangeF<std::__cxx11::basic_string<char>, __gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::use_default, boost::use_default>; <template-parameter-2-2> = void; _Tp = std::__cxx11::basic_string<char>; _Alloc = std::allocator<std::__cxx11::basic_string<char> >; allocator_type = std::allocator<std::__cxx11::basic_string<char> >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/iter_find.hpp:186:31:   required from ‘SequenceSequenceT& boost::algorithm::iter_split(SequenceSequenceT&, RangeT&&, FinderT) [with SequenceSequenceT = std::vector<std::__cxx11::basic_string<char> >; RangeT = std::__cxx11::basic_string<char>&; FinderT = detail::token_finderF<detail::is_any_ofF<char> >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/split.hpp:158:50:   required from ‘SequenceSequenceT& boost::algorithm::split(SequenceSequenceT&, RangeT&&, PredicateT, token_compress_mode_type) [with SequenceSequenceT = std::vector<std::__cxx11::basic_string<char> >; RangeT = std::__cxx11::basic_string<char>&; PredicateT = detail::is_any_ofF<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/stan_csv_reader.hpp:19:17:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/usage.hpp:20:48: warning: ‘this’ pointer is null [-Wnonnull]
   20 |     ~usage_requirements() { ((Model*)0)->~Model(); }
      |                             ~~~~~~~~~~~~~~~~~~~^~
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function ‘boost::Convertible<X, Y>::~Convertible() [with X = boost::iterators::random_access_traversal_tag; Y = boost::iterators::incrementable_traversal_tag]’
   37 |       ~model()
      |       ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept_check.hpp:208:5: note: in expansion of macro ‘BOOST_CONCEPT_USAGE’
  208 |     BOOST_CONCEPT_USAGE(Convertible) {
      |     ^~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/usage.hpp: In instantiation of ‘boost::concepts::usage_requirements<Model>::~usage_requirements() [with Model = boost::range_detail::IncrementableIteratorConcept<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >]’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp:50:47:   required from ‘static void boost::concepts::requirement<boost::concepts::failed************ Model::************>::failed() [with Model = boost::concepts::usage_requirements<boost::range_detail::IncrementableIteratorConcept<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > > >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/range/concepts.hpp:136:13:   required from ‘struct boost::range_detail::IncrementableIteratorConcept<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/range/concepts.hpp:147:16:   required from ‘struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:32:62:   required by substitution of ‘template<class Model> boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints<Model, (& Model::constraints)>*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:42:5:   required from ‘const bool boost::concepts::not_satisfied<boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > > >::value’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:45:51:   [ skipping 14 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/iterator/iterator_facade.hpp:982:3:   required from ‘typename boost::iterators::detail::enable_if_interoperable<Derived1, Derived2, typename boost::mpl::apply2<boost::iterators::detail::always_bool2, Derived1, Derived2>::type>::type boost::iterators::operator!=(const iterator_facade<Derived1, V1, TC1, Reference1, Difference1>&, const iterator_facade<Derived2, V2, TC2, Reference2, Difference2>&) [with Derived1 = transform_iterator<boost::algorithm::detail::copy_iterator_rangeF<std::__cxx11::basic_string<char>, __gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::use_default, boost::use_default>; V1 = std::__cxx11::basic_string<char>; TC1 = forward_traversal_tag; Reference1 = std::__cxx11::basic_string<char>; Difference1 = long int; Derived2 = transform_iterator<boost::algorithm::detail::copy_iterator_rangeF<std::__cxx11::basic_string<char>, __gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::use_default, boost::use_default>; V2 = std::__cxx11::basic_string<char>; TC2 = forward_traversal_tag; Reference2 = std::__cxx11::basic_string<char>; Difference2 = long int; typename detail::enable_if_interoperable<Derived1, Derived2, typename boost::mpl::apply2<detail::always_bool2, Derived1, Derived2>::type>::type = bool; typename boost::mpl::apply2<detail::always_bool2, Derived1, Derived2>::type = bool]’
/usr/include/c++/13/bits/stl_vector.h:1671:21:   required from ‘void std::vector<_Tp, _Alloc>::_M_range_initialize(_InputIterator, _InputIterator, std::input_iterator_tag) [with _InputIterator = boost::iterators::transform_iterator<boost::algorithm::detail::copy_iterator_rangeF<std::__cxx11::basic_string<char>, __gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::use_default, boost::use_default>; _Tp = std::__cxx11::basic_string<char>; _Alloc = std::allocator<std::__cxx11::basic_string<char> >]’
/usr/include/c++/13/bits/stl_vector.h:711:23:   required from ‘std::vector<_Tp, _Alloc>::vector(_InputIterator, _InputIterator, const allocator_type&) [with _InputIterator = boost::iterators::transform_iterator<boost::algorithm::detail::copy_iterator_rangeF<std::__cxx11::basic_string<char>, __gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::use_default, boost::use_default>; <template-parameter-2-2> = void; _Tp = std::__cxx11::basic_string<char>; _Alloc = std::allocator<std::__cxx11::basic_string<char> >; allocator_type = std::allocator<std::__cxx11::basic_string<char> >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/iter_find.hpp:186:31:   required from ‘SequenceSequenceT& boost::algorithm::iter_split(SequenceSequenceT&, RangeT&&, FinderT) [with SequenceSequenceT = std::vector<std::__cxx11::basic_string<char> >; RangeT = std::__cxx11::basic_string<char>&; FinderT = detail::token_finderF<detail::is_any_ofF<char> >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/split.hpp:158:50:   required from ‘SequenceSequenceT& boost::algorithm::split(SequenceSequenceT&, RangeT&&, PredicateT, token_compress_mode_type) [with SequenceSequenceT = std::vector<std::__cxx11::basic_string<char> >; RangeT = std::__cxx11::basic_string<char>&; PredicateT = detail::is_any_ofF<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/stan_csv_reader.hpp:19:17:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/usage.hpp:20:48: warning: ‘this’ pointer is null [-Wnonnull]
   20 |     ~usage_requirements() { ((Model*)0)->~Model(); }
      |                             ~~~~~~~~~~~~~~~~~~~^~
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function ‘boost::range_detail::IncrementableIteratorConcept<Iterator>::~IncrementableIteratorConcept() [with Iterator = __gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> >]’
   37 |       ~model()
      |       ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/range/concepts.hpp:136:13: note: in expansion of macro ‘BOOST_CONCEPT_USAGE’
  136 |             BOOST_CONCEPT_USAGE(IncrementableIteratorConcept)
      |             ^~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/usage.hpp: In instantiation of ‘boost::concepts::usage_requirements<Model>::~usage_requirements() [with Model = boost::EqualityComparable<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >]’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp:50:47:   required from ‘static void boost::concepts::requirement<boost::concepts::failed************ Model::************>::failed() [with Model = boost::concepts::usage_requirements<boost::EqualityComparable<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > > >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept_check.hpp:233:5:   required from ‘struct boost::EqualityComparable<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/range/concepts.hpp:147:16:   required from ‘struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:32:62:   required by substitution of ‘template<class Model> boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints<Model, (& Model::constraints)>*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:42:5:   required from ‘const bool boost::concepts::not_satisfied<boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > > >::value’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:45:51:   [ skipping 14 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/iterator/iterator_facade.hpp:982:3:   required from ‘typename boost::iterators::detail::enable_if_interoperable<Derived1, Derived2, typename boost::mpl::apply2<boost::iterators::detail::always_bool2, Derived1, Derived2>::type>::type boost::iterators::operator!=(const iterator_facade<Derived1, V1, TC1, Reference1, Difference1>&, const iterator_facade<Derived2, V2, TC2, Reference2, Difference2>&) [with Derived1 = transform_iterator<boost::algorithm::detail::copy_iterator_rangeF<std::__cxx11::basic_string<char>, __gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::use_default, boost::use_default>; V1 = std::__cxx11::basic_string<char>; TC1 = forward_traversal_tag; Reference1 = std::__cxx11::basic_string<char>; Difference1 = long int; Derived2 = transform_iterator<boost::algorithm::detail::copy_iterator_rangeF<std::__cxx11::basic_string<char>, __gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::use_default, boost::use_default>; V2 = std::__cxx11::basic_string<char>; TC2 = forward_traversal_tag; Reference2 = std::__cxx11::basic_string<char>; Difference2 = long int; typename detail::enable_if_interoperable<Derived1, Derived2, typename boost::mpl::apply2<detail::always_bool2, Derived1, Derived2>::type>::type = bool; typename boost::mpl::apply2<detail::always_bool2, Derived1, Derived2>::type = bool]’
/usr/include/c++/13/bits/stl_vector.h:1671:21:   required from ‘void std::vector<_Tp, _Alloc>::_M_range_initialize(_InputIterator, _InputIterator, std::input_iterator_tag) [with _InputIterator = boost::iterators::transform_iterator<boost::algorithm::detail::copy_iterator_rangeF<std::__cxx11::basic_string<char>, __gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::use_default, boost::use_default>; _Tp = std::__cxx11::basic_string<char>; _Alloc = std::allocator<std::__cxx11::basic_string<char> >]’
/usr/include/c++/13/bits/stl_vector.h:711:23:   required from ‘std::vector<_Tp, _Alloc>::vector(_InputIterator, _InputIterator, const allocator_type&) [with _InputIterator = boost::iterators::transform_iterator<boost::algorithm::detail::copy_iterator_rangeF<std::__cxx11::basic_string<char>, __gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::use_default, boost::use_default>; <template-parameter-2-2> = void; _Tp = std::__cxx11::basic_string<char>; _Alloc = std::allocator<std::__cxx11::basic_string<char> >; allocator_type = std::allocator<std::__cxx11::basic_string<char> >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/iter_find.hpp:186:31:   required from ‘SequenceSequenceT& boost::algorithm::iter_split(SequenceSequenceT&, RangeT&&, FinderT) [with SequenceSequenceT = std::vector<std::__cxx11::basic_string<char> >; RangeT = std::__cxx11::basic_string<char>&; FinderT = detail::token_finderF<detail::is_any_ofF<char> >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/split.hpp:158:50:   required from ‘SequenceSequenceT& boost::algorithm::split(SequenceSequenceT&, RangeT&&, PredicateT, token_compress_mode_type) [with SequenceSequenceT = std::vector<std::__cxx11::basic_string<char> >; RangeT = std::__cxx11::basic_string<char>&; PredicateT = detail::is_any_ofF<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/stan_csv_reader.hpp:19:17:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/usage.hpp:20:48: warning: ‘this’ pointer is null [-Wnonnull]
   20 |     ~usage_requirements() { ((Model*)0)->~Model(); }
      |                             ~~~~~~~~~~~~~~~~~~~^~
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function ‘boost::EqualityComparable<TT>::~EqualityComparable() [with TT = __gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> >]’
   37 |       ~model()
      |       ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept_check.hpp:233:5: note: in expansion of macro ‘BOOST_CONCEPT_USAGE’
  233 |     BOOST_CONCEPT_USAGE(EqualityComparable) {
      |     ^~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/usage.hpp: In instantiation of ‘boost::concepts::usage_requirements<Model>::~usage_requirements() [with Model = boost::Convertible<boost::iterators::random_access_traversal_tag, boost::iterators::single_pass_traversal_tag>]’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp:50:47:   required from ‘static void boost::concepts::requirement<boost::concepts::failed************ Model::************>::failed() [with Model = boost::concepts::usage_requirements<boost::Convertible<boost::iterators::random_access_traversal_tag, boost::iterators::single_pass_traversal_tag> >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept_check.hpp:208:5:   required from ‘struct boost::Convertible<boost::iterators::random_access_traversal_tag, boost::iterators::single_pass_traversal_tag>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:32:62:   required by substitution of ‘template<class Model> boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints<Model, (& Model::constraints)>*) [with Model = boost::Convertible<boost::iterators::random_access_traversal_tag, boost::iterators::single_pass_traversal_tag>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:42:5:   required from ‘const bool boost::concepts::not_satisfied<boost::Convertible<boost::iterators::random_access_traversal_tag, boost::iterators::single_pass_traversal_tag> >::value’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:45:51:   required from ‘struct boost::concepts::not_satisfied<boost::Convertible<boost::iterators::random_access_traversal_tag, boost::iterators::single_pass_traversal_tag> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp:72:8:   [ skipping 18 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/iterator/iterator_facade.hpp:982:3:   required from ‘typename boost::iterators::detail::enable_if_interoperable<Derived1, Derived2, typename boost::mpl::apply2<boost::iterators::detail::always_bool2, Derived1, Derived2>::type>::type boost::iterators::operator!=(const iterator_facade<Derived1, V1, TC1, Reference1, Difference1>&, const iterator_facade<Derived2, V2, TC2, Reference2, Difference2>&) [with Derived1 = transform_iterator<boost::algorithm::detail::copy_iterator_rangeF<std::__cxx11::basic_string<char>, __gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::use_default, boost::use_default>; V1 = std::__cxx11::basic_string<char>; TC1 = forward_traversal_tag; Reference1 = std::__cxx11::basic_string<char>; Difference1 = long int; Derived2 = transform_iterator<boost::algorithm::detail::copy_iterator_rangeF<std::__cxx11::basic_string<char>, __gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::use_default, boost::use_default>; V2 = std::__cxx11::basic_string<char>; TC2 = forward_traversal_tag; Reference2 = std::__cxx11::basic_string<char>; Difference2 = long int; typename detail::enable_if_interoperable<Derived1, Derived2, typename boost::mpl::apply2<detail::always_bool2, Derived1, Derived2>::type>::type = bool; typename boost::mpl::apply2<detail::always_bool2, Derived1, Derived2>::type = bool]’
/usr/include/c++/13/bits/stl_vector.h:1671:21:   required from ‘void std::vector<_Tp, _Alloc>::_M_range_initialize(_InputIterator, _InputIterator, std::input_iterator_tag) [with _InputIterator = boost::iterators::transform_iterator<boost::algorithm::detail::copy_iterator_rangeF<std::__cxx11::basic_string<char>, __gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::use_default, boost::use_default>; _Tp = std::__cxx11::basic_string<char>; _Alloc = std::allocator<std::__cxx11::basic_string<char> >]’
/usr/include/c++/13/bits/stl_vector.h:711:23:   required from ‘std::vector<_Tp, _Alloc>::vector(_InputIterator, _InputIterator, const allocator_type&) [with _InputIterator = boost::iterators::transform_iterator<boost::algorithm::detail::copy_iterator_rangeF<std::__cxx11::basic_string<char>, __gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::use_default, boost::use_default>; <template-parameter-2-2> = void; _Tp = std::__cxx11::basic_string<char>; _Alloc = std::allocator<std::__cxx11::basic_string<char> >; allocator_type = std::allocator<std::__cxx11::basic_string<char> >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/iter_find.hpp:186:31:   required from ‘SequenceSequenceT& boost::algorithm::iter_split(SequenceSequenceT&, RangeT&&, FinderT) [with SequenceSequenceT = std::vector<std::__cxx11::basic_string<char> >; RangeT = std::__cxx11::basic_string<char>&; FinderT = detail::token_finderF<detail::is_any_ofF<char> >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/split.hpp:158:50:   required from ‘SequenceSequenceT& boost::algorithm::split(SequenceSequenceT&, RangeT&&, PredicateT, token_compress_mode_type) [with SequenceSequenceT = std::vector<std::__cxx11::basic_string<char> >; RangeT = std::__cxx11::basic_string<char>&; PredicateT = detail::is_any_ofF<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/stan_csv_reader.hpp:19:17:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/usage.hpp:20:48: warning: ‘this’ pointer is null [-Wnonnull]
   20 |     ~usage_requirements() { ((Model*)0)->~Model(); }
      |                             ~~~~~~~~~~~~~~~~~~~^~
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function ‘boost::Convertible<X, Y>::~Convertible() [with X = boost::iterators::random_access_traversal_tag; Y = boost::iterators::single_pass_traversal_tag]’
   37 |       ~model()
      |       ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept_check.hpp:208:5: note: in expansion of macro ‘BOOST_CONCEPT_USAGE’
  208 |     BOOST_CONCEPT_USAGE(Convertible) {
      |     ^~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/usage.hpp: In instantiation of ‘boost::concepts::usage_requirements<Model>::~usage_requirements() [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >]’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp:50:47:   required from ‘static void boost::concepts::requirement<boost::concepts::failed************ Model::************>::failed() [with Model = boost::concepts::usage_requirements<boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > > >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/range/concepts.hpp:158:13:   required from ‘struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:32:62:   required by substitution of ‘template<class Model> boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints<Model, (& Model::constraints)>*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:42:5:   required from ‘const bool boost::concepts::not_satisfied<boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > > >::value’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:45:51:   required from ‘struct boost::concepts::not_satisfied<boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp:72:8:   [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/iterator/iterator_facade.hpp:982:3:   required from ‘typename boost::iterators::detail::enable_if_interoperable<Derived1, Derived2, typename boost::mpl::apply2<boost::iterators::detail::always_bool2, Derived1, Derived2>::type>::type boost::iterators::operator!=(const iterator_facade<Derived1, V1, TC1, Reference1, Difference1>&, const iterator_facade<Derived2, V2, TC2, Reference2, Difference2>&) [with Derived1 = transform_iterator<boost::algorithm::detail::copy_iterator_rangeF<std::__cxx11::basic_string<char>, __gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::use_default, boost::use_default>; V1 = std::__cxx11::basic_string<char>; TC1 = forward_traversal_tag; Reference1 = std::__cxx11::basic_string<char>; Difference1 = long int; Derived2 = transform_iterator<boost::algorithm::detail::copy_iterator_rangeF<std::__cxx11::basic_string<char>, __gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::use_default, boost::use_default>; V2 = std::__cxx11::basic_string<char>; TC2 = forward_traversal_tag; Reference2 = std::__cxx11::basic_string<char>; Difference2 = long int; typename detail::enable_if_interoperable<Derived1, Derived2, typename boost::mpl::apply2<detail::always_bool2, Derived1, Derived2>::type>::type = bool; typename boost::mpl::apply2<detail::always_bool2, Derived1, Derived2>::type = bool]’
/usr/include/c++/13/bits/stl_vector.h:1671:21:   required from ‘void std::vector<_Tp, _Alloc>::_M_range_initialize(_InputIterator, _InputIterator, std::input_iterator_tag) [with _InputIterator = boost::iterators::transform_iterator<boost::algorithm::detail::copy_iterator_rangeF<std::__cxx11::basic_string<char>, __gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::use_default, boost::use_default>; _Tp = std::__cxx11::basic_string<char>; _Alloc = std::allocator<std::__cxx11::basic_string<char> >]’
/usr/include/c++/13/bits/stl_vector.h:711:23:   required from ‘std::vector<_Tp, _Alloc>::vector(_InputIterator, _InputIterator, const allocator_type&) [with _InputIterator = boost::iterators::transform_iterator<boost::algorithm::detail::copy_iterator_rangeF<std::__cxx11::basic_string<char>, __gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::use_default, boost::use_default>; <template-parameter-2-2> = void; _Tp = std::__cxx11::basic_string<char>; _Alloc = std::allocator<std::__cxx11::basic_string<char> >; allocator_type = std::allocator<std::__cxx11::basic_string<char> >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/iter_find.hpp:186:31:   required from ‘SequenceSequenceT& boost::algorithm::iter_split(SequenceSequenceT&, RangeT&&, FinderT) [with SequenceSequenceT = std::vector<std::__cxx11::basic_string<char> >; RangeT = std::__cxx11::basic_string<char>&; FinderT = detail::token_finderF<detail::is_any_ofF<char> >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/split.hpp:158:50:   required from ‘SequenceSequenceT& boost::algorithm::split(SequenceSequenceT&, RangeT&&, PredicateT, token_compress_mode_type) [with SequenceSequenceT = std::vector<std::__cxx11::basic_string<char> >; RangeT = std::__cxx11::basic_string<char>&; PredicateT = detail::is_any_ofF<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/stan_csv_reader.hpp:19:17:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/usage.hpp:20:48: warning: ‘this’ pointer is null [-Wnonnull]
   20 |     ~usage_requirements() { ((Model*)0)->~Model(); }
      |                             ~~~~~~~~~~~~~~~~~~~^~
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function ‘boost::range_detail::SinglePassIteratorConcept<Iterator>::~SinglePassIteratorConcept() [with Iterator = __gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> >]’
   37 |       ~model()
      |       ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/range/concepts.hpp:158:13: note: in expansion of macro ‘BOOST_CONCEPT_USAGE’
  158 |             BOOST_CONCEPT_USAGE(SinglePassIteratorConcept)
      |             ^~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/usage.hpp: In instantiation of ‘boost::concepts::usage_requirements<Model>::~usage_requirements() [with Model = boost::SinglePassRangeConcept<const boost::iterator_range<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > > >]’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp:50:47:   required from ‘static void boost::concepts::requirement<boost::concepts::failed************ Model::************>::failed() [with Model = boost::concepts::usage_requirements<boost::SinglePassRangeConcept<const boost::iterator_range<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > > > >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/range/concepts.hpp:284:9:   required from ‘struct boost::SinglePassRangeConcept<const boost::iterator_range<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:32:62:   required by substitution of ‘template<class Model> boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints<Model, (& Model::constraints)>*) [with Model = boost::SinglePassRangeConcept<const boost::iterator_range<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > > >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:42:5:   required from ‘const bool boost::concepts::not_satisfied<boost::SinglePassRangeConcept<const boost::iterator_range<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > > > >::value’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/has_constraints.hpp:45:51:   required from ‘struct boost::concepts::not_satisfied<boost::SinglePassRangeConcept<const boost::iterator_range<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/detail/general.hpp:72:8:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/iterator/iterator_facade.hpp:982:3:   required from ‘typename boost::iterators::detail::enable_if_interoperable<Derived1, Derived2, typename boost::mpl::apply2<boost::iterators::detail::always_bool2, Derived1, Derived2>::type>::type boost::iterators::operator!=(const iterator_facade<Derived1, V1, TC1, Reference1, Difference1>&, const iterator_facade<Derived2, V2, TC2, Reference2, Difference2>&) [with Derived1 = transform_iterator<boost::algorithm::detail::copy_iterator_rangeF<std::__cxx11::basic_string<char>, __gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::use_default, boost::use_default>; V1 = std::__cxx11::basic_string<char>; TC1 = forward_traversal_tag; Reference1 = std::__cxx11::basic_string<char>; Difference1 = long int; Derived2 = transform_iterator<boost::algorithm::detail::copy_iterator_rangeF<std::__cxx11::basic_string<char>, __gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::use_default, boost::use_default>; V2 = std::__cxx11::basic_string<char>; TC2 = forward_traversal_tag; Reference2 = std::__cxx11::basic_string<char>; Difference2 = long int; typename detail::enable_if_interoperable<Derived1, Derived2, typename boost::mpl::apply2<detail::always_bool2, Derived1, Derived2>::type>::type = bool; typename boost::mpl::apply2<detail::always_bool2, Derived1, Derived2>::type = bool]’
/usr/include/c++/13/bits/stl_vector.h:1671:21:   required from ‘void std::vector<_Tp, _Alloc>::_M_range_initialize(_InputIterator, _InputIterator, std::input_iterator_tag) [with _InputIterator = boost::iterators::transform_iterator<boost::algorithm::detail::copy_iterator_rangeF<std::__cxx11::basic_string<char>, __gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::use_default, boost::use_default>; _Tp = std::__cxx11::basic_string<char>; _Alloc = std::allocator<std::__cxx11::basic_string<char> >]’
/usr/include/c++/13/bits/stl_vector.h:711:23:   required from ‘std::vector<_Tp, _Alloc>::vector(_InputIterator, _InputIterator, const allocator_type&) [with _InputIterator = boost::iterators::transform_iterator<boost::algorithm::detail::copy_iterator_rangeF<std::__cxx11::basic_string<char>, __gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >, boost::use_default, boost::use_default>; <template-parameter-2-2> = void; _Tp = std::__cxx11::basic_string<char>; _Alloc = std::allocator<std::__cxx11::basic_string<char> >; allocator_type = std::allocator<std::__cxx11::basic_string<char> >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/iter_find.hpp:186:31:   required from ‘SequenceSequenceT& boost::algorithm::iter_split(SequenceSequenceT&, RangeT&&, FinderT) [with SequenceSequenceT = std::vector<std::__cxx11::basic_string<char> >; RangeT = std::__cxx11::basic_string<char>&; FinderT = detail::token_finderF<detail::is_any_ofF<char> >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/algorithm/string/split.hpp:158:50:   required from ‘SequenceSequenceT& boost::algorithm::split(SequenceSequenceT&, RangeT&&, PredicateT, token_compress_mode_type) [with SequenceSequenceT = std::vector<std::__cxx11::basic_string<char> >; RangeT = std::__cxx11::basic_string<char>&; PredicateT = detail::is_any_ofF<char>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/io/stan_csv_reader.hpp:19:17:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/usage.hpp:20:48: warning: ‘this’ pointer is null [-Wnonnull]
   20 |     ~usage_requirements() { ((Model*)0)->~Model(); }
      |                             ~~~~~~~~~~~~~~~~~~~^~
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function ‘boost::SinglePassRangeConcept<T>::~SinglePassRangeConcept() [with T = const boost::iterator_range<__gnu_cxx::__normal_iterator<char*, std::__cxx11::basic_string<char> > >]’
   37 |       ~model()
      |       ^
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/range/concepts.hpp:284:9: note: in expansion of macro ‘BOOST_CONCEPT_USAGE’
  284 |         BOOST_CONCEPT_USAGE(SinglePassRangeConcept)
      |         ^~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Diagonal<Eigen::Matrix<double, 4, 4>, 0>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Diagonal<Eigen::Matrix<double, 4, 4>, 0>, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Diagonal<Eigen::Matrix<double, 4, 4>, 0>, 3>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Diagonal<Eigen::Matrix<double, 4, 4>, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Diagonal<Eigen::Matrix<double, 4, 4>, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Diagonal.h:63:53:   required from ‘class Eigen::Diagonal<Eigen::Matrix<double, 4, 4>, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:303:32:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/TriangularMatrix.h:856:103:   required from ‘static void Eigen::internal::Assignment<DstXprType, SrcXprType, Functor, Eigen::internal::Triangular2Dense>::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; SrcXprType = Eigen::TriangularView<const Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Functor = Eigen::internal::add_assign_op<double, double>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; Src = Eigen::TriangularView<const Eigen::Product<Eigen::CwiseBinaryOp<scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Func = add_assign_op<double, double>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing<Src>::value), void*>::type) [with Dst = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; Src = Eigen::TriangularView<const Eigen::Product<Eigen::CwiseBinaryOp<scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Func = add_assign_op<double, double>; typename enable_if<(! evaluator_assume_aliasing<Src>::value), void*>::type = void*; typename evaluator_traits<SrcXprType>::Shape = Eigen::TriangularShape]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/EigenBase.h:145:18:   required from ‘Derived& Eigen::DenseBase<Derived>::operator+=(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::TriangularView<const Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Derived = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply_lower_tri_self_transpose.hpp:31:0:   required from ‘auto stan::math::multiply_lower_tri_self_transpose(const T&) [with T = var_value<Eigen::Matrix<double, -1, -1> >; stan::require_rev_matrix_t<T>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cov_matrix_constrain.hpp:59:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   56 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
In file included from /home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/Core:166:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/Memory.h: In instantiation of ‘Index Eigen::internal::first_default_aligned(const Scalar*, Index) [with Scalar = double; Index = long int]’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointMatrixVector.h:89:68:   required from ‘static void Eigen::internal::selfadjoint_matrix_vector_product<Scalar, Index, StorageOrder, UpLo, ConjugateLhs, ConjugateRhs, Version>::run(Index, const Scalar*, Index, const Scalar*, Scalar*, Scalar) [with Scalar = double; Index = long int; int StorageOrder = 0; int UpLo = 1; bool ConjugateLhs = false; bool ConjugateRhs = false; int Version = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/SelfadjointMatrixVector.h:229:7:   required from ‘static void Eigen::internal::selfadjoint_product_impl<Lhs, LhsMode, false, Rhs, 0, true>::run(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>; Lhs = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; int LhsMode = 17; Rhs = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >; Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:805:109:   required from ‘static void Eigen::internal::generic_product_impl<Lhs, Rhs, Eigen::SelfAdjointShape, Eigen::DenseShape, ProductTag>::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>; Lhs = Eigen::SelfAdjointView<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1>; Rhs = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >; int ProductTag = 7; Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361:27:   required from ‘static void Eigen::internal::generic_product_impl_base<Lhs, Rhs, Derived>::scaleAndAddTo(Dst&, const Lhs&, const Rhs&, const Scalar&) [with Dst = Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>; Lhs = Eigen::SelfAdjointView<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1>; Rhs = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >; Derived = Eigen::internal::generic_product_impl<Eigen::SelfAdjointView<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >, Eigen::SelfAdjointShape, Eigen::DenseShape, 7>; Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349:33:   required from ‘static void Eigen::internal::generic_product_impl_base<Lhs, Rhs, Derived>::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>; Lhs = Eigen::SelfAdjointView<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1>; Rhs = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >; Derived = Eigen::internal::generic_product_impl<Eigen::SelfAdjointView<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1>, Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >, Eigen::SelfAdjointShape, Eigen::DenseShape, 7>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:369:35:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, CoeffVectorType&) [with MatrixType = Eigen::Matrix<double, -1, -1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:449:31:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/Memory.h:500:60: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
  500 |   return first_aligned<unpacket_traits<DefaultPacketType>::alignment>(array, size);
      |                                                            ^~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Product<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>, 0>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Product<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Product<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7:   required from ‘class Eigen::internal::dense_product_base<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>, 0, 7>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7:   required from ‘class Eigen::ProductImpl<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Householder/Householder.h:167:27:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::HouseholderSequence<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   56 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, 3>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34:   [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::HouseholderSequence<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Householder/Householder.h:169:25:   required from ‘void Eigen::MatrixBase<Derived>::applyHouseholderOnTheRight(const EssentialPart&, const Scalar&, Scalar*) [with EssentialPart = Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>; Derived = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:304:43:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::HouseholderSequence<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, 2>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37:   required from ‘class Eigen::TransposeImpl<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   required from ‘class Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Householder/Householder.h:170:53:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::HouseholderSequence<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, 0>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7:   required from ‘class Eigen::internal::dense_product_base<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, 0, 5>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7:   required from ‘class Eigen::ProductImpl<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Householder/Householder.h:170:34:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::HouseholderSequence<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Product<Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 0>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Product<Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Product<Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7:   required from ‘class Eigen::internal::dense_product_base<Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 0, 7>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7:   required from ‘class Eigen::ProductImpl<Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product<Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Householder/Householder.h:129:41:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::HouseholderSequence<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Map<Eigen::Matrix<double, 1, -1>, 0, Eigen::Stride<0, 0> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Map<Eigen::Matrix<double, 1, -1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Map<Eigen::Matrix<double, 1, -1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Map<Eigen::Matrix<double, 1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Map<Eigen::Matrix<double, 1, -1>, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Householder/Householder.h:131:25:   required from ‘void Eigen::MatrixBase<Derived>::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Scalar*) [with EssentialPart = Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>; Derived = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:307:42:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::HouseholderSequence<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Householder/Householder.h:132:29:   required from ‘void Eigen::MatrixBase<Derived>::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Scalar*) [with EssentialPart = Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>; Derived = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:307:42:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::HouseholderSequence<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, Eigen::Map<Eigen::Matrix<double, 1, -1>, 0, Eigen::Stride<0, 0> >, 0>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, Eigen::Map<Eigen::Matrix<double, 1, -1>, 0, Eigen::Stride<0, 0> >, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, Eigen::Map<Eigen::Matrix<double, 1, -1>, 0, Eigen::Stride<0, 0> >, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7:   required from ‘class Eigen::internal::dense_product_base<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, Eigen::Map<Eigen::Matrix<double, 1, -1>, 0, Eigen::Stride<0, 0> >, 0, 5>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7:   required from ‘class Eigen::ProductImpl<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, Eigen::Map<Eigen::Matrix<double, 1, -1>, 0, Eigen::Stride<0, 0> >, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, Eigen::Map<Eigen::Matrix<double, 1, -1>, 0, Eigen::Stride<0, 0> >, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Householder/Householder.h:132:41:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::HouseholderSequence<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Matrix<double, -1, 1>, -1, 1, false>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Matrix<double, -1, 1>, -1, 1, false>, 2>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Block<const Eigen::Matrix<double, -1, 1>, -1, 1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Block<const Eigen::Matrix<double, -1, 1>, -1, 1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Block<const Eigen::Matrix<double, -1, 1>, -1, 1, false>, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7:   required from ‘class Eigen::internal::BlockImpl_dense<const Eigen::Matrix<double, -1, 1>, -1, 1, false, true>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::HouseholderSequence<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase<Derived>&) [with Derived = Eigen::CwiseBinaryOp<scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, 1, -1, true> >, const Eigen::Block<const Eigen::Matrix<double, -1, 1>, -1, 1, true> >; Eigen::Index = long int]’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63:   required from ‘static Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::Scalar Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, 1, -1, true> >, const Eigen::Block<const Eigen::Matrix<double, -1, 1>, -1, 1, true> >; Func = Eigen::internal::scalar_sum_op<double, double>; Evaluator = Eigen::internal::redux_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, 1, -1, true> >, const Eigen::Block<const Eigen::Matrix<double, -1, 1>, -1, 1, true> > >; Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56:   required from ‘typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, 1, -1, true> >, const Eigen::Block<const Eigen::Matrix<double, -1, 1>, -1, 1, true> >; typename Eigen::internal::traits<T>::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25:   required from ‘typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::sum() const [with Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, 1, -1, true> >, const Eigen::Block<const Eigen::Matrix<double, -1, 1>, -1, 1, true> >; typename Eigen::internal::traits<T>::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:63:   required from ‘static Eigen::internal::dot_nocheck<T, U, true>::ResScalar Eigen::internal::dot_nocheck<T, U, true>::run(const Eigen::MatrixBase<Derived>&, const Eigen::MatrixBase<U>&) [with T = Eigen::Block<const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, 1, -1, true>; U = Eigen::Block<const Eigen::Matrix<double, -1, 1>, -1, 1, true>; ResScalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58:   required from ‘typename Eigen::ScalarBinaryOpTraits<typename Eigen::internal::traits<T>::Scalar, typename Eigen::internal::traits<OtherDerived>::Scalar>::ReturnType Eigen::MatrixBase<Derived>::dot(const Eigen::MatrixBase<OtherDerived>&) const [with OtherDerived = Eigen::Block<const Eigen::Matrix<double, -1, 1>, -1, 1, true>; Derived = Eigen::Block<const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, 1, -1, true>; typename Eigen::ScalarBinaryOpTraits<typename Eigen::internal::traits<T>::Scalar, typename Eigen::internal::traits<OtherDerived>::Scalar>::ReturnType = double; typename Eigen::internal::traits<T>::Scalar = double; typename Eigen::internal::traits<OtherDerived>::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:380:62:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43:   required from ‘static void Eigen::internal::Assignment<DstXprType, Eigen::Product<Lhs, Rhs, Options>, Eigen::internal::assign_op<Scalar, Scalar>, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op<Scalar, Scalar>&) [with DstXprType = Eigen::Matrix<double, -1, 1>; Lhs = Eigen::Transpose<Eigen::Matrix<double, -1, -1> >; Rhs = Eigen::Matrix<double, -1, 1>; int Options = 0; Scalar = double; SrcXprType = Eigen::Product<Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, Eigen::Matrix<double, -1, 1>, 0>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix<double, -1, 1>; Src = Eigen::Product<Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, Eigen::Matrix<double, -1, 1>, 0>; Func = assign_op<double, double>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41:   required from ‘Derived& Eigen::PlainObjectBase<Derived>::_set_noalias(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, Eigen::Matrix<double, -1, 1>, 0>; Derived = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19:   required from ‘Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, Eigen::Matrix<double, -1, 1>, 0>; Derived = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, Eigen::Matrix<double, -1, 1>, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:22:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
  654 |   return internal::first_aligned<int(unpacket_traits<DefaultPacketType>::alignment),Derived>(m);
      |                                                                          ^~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, 1, -1, false> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, 1, -1, false> >, 2>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, 1, -1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, 1, -1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37:   required from ‘class Eigen::TransposeImpl<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, 1, -1, false>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   required from ‘class Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, 1, -1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:23:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:332:31:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const T&) [with T = Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:850:41:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<evaluator_assume_aliasing<Src>::value, void*>::type) [with Dst = Eigen::Matrix<double, -1, 1>; Src = Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 0>; Func = assign_op<double, double>; typename enable_if<evaluator_assume_aliasing<Src>::value, void*>::type = void*; typename evaluator_traits<SrcXprType>::Shape = Eigen::DenseShape]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:18:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix<double, -1, 1>; Src = Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 0>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:779:32:   required from ‘Derived& Eigen::PlainObjectBase<Derived>::_set(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 0>; Derived = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:225:24:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:26:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   56 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, 1, -1, false> >, const Eigen::Block<const Eigen::Matrix<double, -1, 1>, -1, 1, true> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, 1, -1, false> >, const Eigen::Block<const Eigen::Matrix<double, -1, 1>, -1, 1, true> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, 1, -1, false> >, const Eigen::Block<const Eigen::Matrix<double, -1, 1>, -1, 1, true> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, 1, -1, false> >, const Eigen::Block<const Eigen::Matrix<double, -1, 1>, -1, 1, true>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, 1, -1, false> >, const Eigen::Block<const Eigen::Matrix<double, -1, 1>, -1, 1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:56:   required from ‘static Eigen::internal::dot_nocheck<T, U, true>::ResScalar Eigen::internal::dot_nocheck<T, U, true>::run(const Eigen::MatrixBase<Derived>&, const Eigen::MatrixBase<U>&) [with T = Eigen::Block<const Eigen::Matrix<double, -1, -1>, 1, -1, false>; U = Eigen::Block<const Eigen::Matrix<double, -1, 1>, -1, 1, true>; ResScalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:332:31:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const T&) [with T = Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:850:41:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<evaluator_assume_aliasing<Src>::value, void*>::type) [with Dst = Eigen::Matrix<double, -1, 1>; Src = Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 0>; Func = assign_op<double, double>; typename enable_if<evaluator_assume_aliasing<Src>::value, void*>::type = void*; typename evaluator_traits<SrcXprType>::Shape = Eigen::DenseShape]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:18:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix<double, -1, 1>; Src = Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 0>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:779:32:   required from ‘Derived& Eigen::PlainObjectBase<Derived>::_set(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 0>; Derived = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:225:24:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:26:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h: In instantiation of ‘void Eigen::internal::gemm_pack_lhs<Scalar, Index, DataMapper, Pack1, Pack2, Packet, 0, Conjugate, PanelMode>::operator()(Scalar*, const DataMapper&, Index, Index, Index, Index) [with Scalar = double; Index = long int; DataMapper = Eigen::internal::const_blas_data_mapper<double, long int, 0>; int Pack1 = 4; int Pack2 = 2; Packet = __vector(2) double; bool Conjugate = false; bool PanelMode = false]’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:184:17:   required from ‘static void Eigen::internal::general_matrix_matrix_product<Index, LhsScalar, LhsStorageOrder, ConjugateLhs, RhsScalar, RhsStorageOrder, ConjugateRhs, 0, ResInnerStride>::run(Index, Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, Index, ResScalar, Eigen::internal::level3_blocking<LhsScalar, RhsScalar>&, Eigen::internal::GemmParallelInfo<Index>*) [with Index = long int; LhsScalar = double; int LhsStorageOrder = 0; bool ConjugateLhs = false; RhsScalar = double; int RhsStorageOrder = 1; bool ConjugateRhs = false; int ResInnerStride = 1; ResScalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:230:14:   required from ‘void Eigen::internal::gemm_functor<Scalar, Index, Gemm, Lhs, Rhs, Dest, BlockingType>::operator()(Index, Index, Index, Index, Eigen::internal::GemmParallelInfo<Index>*) const [with Scalar = double; Index = long int; Gemm = Eigen::internal::general_matrix_matrix_product<long int, double, 0, false, double, 1, false, 0, 1>; Lhs = Eigen::Matrix<double, -1, -1>; Rhs = Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >; Dest = Eigen::Matrix<double, -1, -1>; BlockingType = Eigen::internal::gemm_blocking_space<0, double, double, -1, -1, -1, 1, false>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/Parallelizer.h:114:7:   required from ‘void Eigen::internal::parallelize_gemm(const Functor&, Index, Index, Index, bool) [with bool Condition = true; Functor = gemm_functor<double, long int, general_matrix_matrix_product<long int, double, 0, false, double, 1, false, 0, 1>, Eigen::Matrix<double, -1, -1>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, Eigen::Matrix<double, -1, -1>, gemm_blocking_space<0, double, double, -1, -1, -1, 1, false> >; Index = long int]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:509:9:   required from ‘static void Eigen::internal::generic_product_impl<Lhs, Rhs, Eigen::DenseShape, Eigen::DenseShape, 8>::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Matrix<double, -1, -1>; Lhs = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >; Rhs = Eigen::Transpose<Eigen::Matrix<double, -1, -1> >; Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:445:20:   required from ‘static void Eigen::internal::generic_product_impl<Lhs, Rhs, Eigen::DenseShape, Eigen::DenseShape, 8>::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix<double, -1, -1>; Lhs = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >; Rhs = Eigen::Transpose<Eigen::Matrix<double, -1, -1> >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:37:0:   required from ‘Scalar stan::optimization::BFGSUpdate_HInv<Scalar, DimAtCompile>::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0:   required from ‘int stan::optimization::BFGSMinimizer<FunctorType, QNUpdateType, Scalar, DimAtCompile>::step() [with FunctorType = stan::optimization::ModelAdaptor<model_shrinkage_namespace::model_shrinkage, false>; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0:   required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage; bool jacobian = false]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:15:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2100:82: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
 2100 |   typedef typename unpacket_traits<typename unpacket_traits<Packet>::half>::half QuarterPacket;
      |                                                                                  ^~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2102:56: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
 2102 |          HalfPacketSize = unpacket_traits<HalfPacket>::size,
      |                                                        ^~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2103:62: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
 2103 |          QuarterPacketSize = unpacket_traits<QuarterPacket>::size,
      |                                                              ^~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2103:62: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_abs2_op<double>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:98:40:   required from ‘typename Eigen::NumTraits<typename Eigen::internal::traits<T>::Scalar>::Real Eigen::MatrixBase<Derived>::squaredNorm() const [with Derived = Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>; typename Eigen::NumTraits<typename Eigen::internal::traits<T>::Scalar>::Real = double; typename Eigen::internal::traits<T>::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:328:36:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/run_adaptive_sampler.hpp:57:0:   required from ‘void stan::services::util::run_adaptive_sampler(Sampler&, Model&, std::vector<double>&, int, int, int, int, bool, RNG&, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, size_t, size_t) [with Sampler = stan::mcmc::adapt_dense_e_nuts<model_shrinkage_namespace::model_shrinkage, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> > >; Model = model_shrinkage_namespace::model_shrinkage; RNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; size_t = long unsigned int]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:97:0:   required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:150:0:   required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:638:0:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:15:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   56 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_abs2_op<double>, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:98:40:   required from ‘typename Eigen::NumTraits<typename Eigen::internal::traits<T>::Scalar>::Real Eigen::MatrixBase<Derived>::squaredNorm() const [with Derived = Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false>; typename Eigen::NumTraits<typename Eigen::internal::traits<T>::Scalar>::Real = double; typename Eigen::internal::traits<T>::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:328:36:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/run_adaptive_sampler.hpp:57:0:   required from ‘void stan::services::util::run_adaptive_sampler(Sampler&, Model&, std::vector<double>&, int, int, int, int, bool, RNG&, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, size_t, size_t) [with Sampler = stan::mcmc::adapt_dense_e_nuts<model_shrinkage_namespace::model_shrinkage, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> > >; Model = model_shrinkage_namespace::model_shrinkage; RNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; size_t = long unsigned int]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:97:0:   required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:150:0:   required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:638:0:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:15:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase<Derived>&) [with Derived = Eigen::CwiseBinaryOp<scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true> >, const Eigen::Block<const Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, -1, 1, true>, -1, 1, true> >; Eigen::Index = long int]’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63:   required from ‘static Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::Scalar Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true> >, const Eigen::Block<const Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, -1, 1, true>, -1, 1, true> >; Func = Eigen::internal::scalar_sum_op<double, double>; Evaluator = Eigen::internal::redux_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true> >, const Eigen::Block<const Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, -1, 1, true>, -1, 1, true> > >; Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56:   required from ‘typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true> >, const Eigen::Block<const Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, -1, 1, true>, -1, 1, true> >; typename Eigen::internal::traits<T>::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25:   required from ‘typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::sum() const [with Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true> >, const Eigen::Block<const Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, -1, 1, true>, -1, 1, true> >; typename Eigen::internal::traits<T>::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:63:   required from ‘static Eigen::internal::dot_nocheck<T, U, true>::ResScalar Eigen::internal::dot_nocheck<T, U, true>::run(const Eigen::MatrixBase<Derived>&, const Eigen::MatrixBase<U>&) [with T = Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>; U = Eigen::Block<const Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, -1, 1, true>, -1, 1, true>; ResScalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58:   required from ‘typename Eigen::ScalarBinaryOpTraits<typename Eigen::internal::traits<T>::Scalar, typename Eigen::internal::traits<OtherDerived>::Scalar>::ReturnType Eigen::MatrixBase<Derived>::dot(const Eigen::MatrixBase<OtherDerived>&) const [with OtherDerived = Eigen::Block<const Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, -1, 1, true>, -1, 1, true>; Derived = Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>; typename Eigen::ScalarBinaryOpTraits<typename Eigen::internal::traits<T>::Scalar, typename Eigen::internal::traits<OtherDerived>::Scalar>::ReturnType = double; typename Eigen::internal::traits<T>::Scalar = double; typename Eigen::internal::traits<OtherDerived>::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:380:62:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41:   required from ‘Derived& Eigen::PlainObjectBase<Derived>::_set_noalias(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Matrix<double, -1, -1, 1, -1, -1>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 0>; Derived = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19:   required from ‘Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Matrix<double, -1, -1, 1, -1, -1>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 0>; Derived = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Matrix<double, -1, -1, 1, -1, -1>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:29:18:   required from ‘Eigen::Matrix<typename stan::value_type<T>::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0> >; stan::require_eigen_vt<std::is_arithmetic, T>* <anonymous> = 0; typename stan::value_type<T>::type = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20:   required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0>; stan::require_eigen_t<T_desired>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
  654 |   return internal::first_aligned<int(unpacket_traits<DefaultPacketType>::alignment),Derived>(m);
      |                                                                          ^~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase<Derived>&) [with Derived = Eigen::CwiseBinaryOp<scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, true> >, const Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, -1, 1, true> >; Eigen::Index = long int]’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63:   required from ‘static Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::Scalar Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, true> >, const Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, -1, 1, true> >; Func = Eigen::internal::scalar_sum_op<double, double>; Evaluator = Eigen::internal::redux_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, true> >, const Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, -1, 1, true> > >; Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56:   required from ‘typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, true> >, const Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, -1, 1, true> >; typename Eigen::internal::traits<T>::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25:   required from ‘typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::sum() const [with Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, true> >, const Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, -1, 1, true> >; typename Eigen::internal::traits<T>::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:63:   required from ‘static Eigen::internal::dot_nocheck<T, U, true>::ResScalar Eigen::internal::dot_nocheck<T, U, true>::run(const Eigen::MatrixBase<Derived>&, const Eigen::MatrixBase<U>&) [with T = Eigen::Block<const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, true>; U = Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, -1, 1, true>; ResScalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58:   required from ‘typename Eigen::ScalarBinaryOpTraits<typename Eigen::internal::traits<T>::Scalar, typename Eigen::internal::traits<OtherDerived>::Scalar>::ReturnType Eigen::MatrixBase<Derived>::dot(const Eigen::MatrixBase<OtherDerived>&) const [with OtherDerived = Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, -1, 1, true>; Derived = Eigen::Block<const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, true>; typename Eigen::ScalarBinaryOpTraits<typename Eigen::internal::traits<T>::Scalar, typename Eigen::internal::traits<OtherDerived>::Scalar>::ReturnType = double; typename Eigen::internal::traits<T>::Scalar = double; typename Eigen::internal::traits<OtherDerived>::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:380:62:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41:   required from ‘Derived& Eigen::PlainObjectBase<Derived>::_set_noalias(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Matrix<double, -1, -1, 1, -1, -1>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 0>; Derived = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19:   required from ‘Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Matrix<double, -1, -1, 1, -1, -1>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 0>; Derived = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Matrix<double, -1, -1, 1, -1, -1>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:29:18:   required from ‘Eigen::Matrix<typename stan::value_type<T>::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0> >; stan::require_eigen_vt<std::is_arithmetic, T>* <anonymous> = 0; typename stan::value_type<T>::type = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20:   required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0>; stan::require_eigen_t<T_desired>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h: In instantiation of ‘void Eigen::internal::gemm_pack_rhs<Scalar, Index, DataMapper, nr, 0, Conjugate, PanelMode>::operator()(Scalar*, const DataMapper&, Index, Index, Index, Index) [with Scalar = double; Index = long int; DataMapper = Eigen::internal::const_blas_data_mapper<double, long int, 0>; int nr = 4; bool Conjugate = false; bool PanelMode = true]’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:346:25:   required from ‘static void Eigen::internal::product_triangular_matrix_matrix<Scalar, Index, Mode, false, LhsStorageOrder, ConjugateLhs, RhsStorageOrder, ConjugateRhs, 0, ResInnerStride, Version>::run(Index, Index, Index, const Scalar*, Index, const Scalar*, Index, Scalar*, Index, Index, const Scalar&, Eigen::internal::level3_blocking<Scalar, Scalar>&) [with Scalar = double; Index = long int; int Mode = 1; int LhsStorageOrder = 1; bool ConjugateLhs = false; int RhsStorageOrder = 0; bool ConjugateRhs = false; int ResInnerStride = 1; int Version = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:443:12:   required from ‘static void Eigen::internal::triangular_product_impl<Mode, LhsIsTriangular, Lhs, false, Rhs, false>::run(Dest&, const Lhs&, const Rhs&, const typename Dest::Scalar&) [with Dest = Eigen::Matrix<double, -1, -1>; int Mode = 1; bool LhsIsTriangular = false; Lhs = Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >; Rhs = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; typename Dest::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:783:113:   required from ‘static void Eigen::internal::generic_product_impl<Lhs, Rhs, Eigen::DenseShape, Eigen::TriangularShape, ProductTag>::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Matrix<double, -1, -1>; Lhs = Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >; Rhs = Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>; int ProductTag = 8; Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361:27:   required from ‘static void Eigen::internal::generic_product_impl_base<Lhs, Rhs, Derived>::scaleAndAddTo(Dst&, const Lhs&, const Rhs&, const Scalar&) [with Dst = Eigen::Matrix<double, -1, -1>; Lhs = Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >; Rhs = Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>; Derived = Eigen::internal::generic_product_impl<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, Eigen::DenseShape, Eigen::TriangularShape, 8>; Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349:33:   required from ‘static void Eigen::internal::generic_product_impl_base<Lhs, Rhs, Derived>::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix<double, -1, -1>; Lhs = Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >; Rhs = Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>; Derived = Eigen::internal::generic_product_impl<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, Eigen::DenseShape, Eigen::TriangularShape, 8>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:124:75:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/TriangularMatrix.h:856:103:   required from ‘static void Eigen::internal::Assignment<DstXprType, SrcXprType, Functor, Eigen::internal::Triangular2Dense>::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; SrcXprType = Eigen::TriangularView<const Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Functor = Eigen::internal::add_assign_op<double, double>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; Src = Eigen::TriangularView<const Eigen::Product<Eigen::CwiseBinaryOp<scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Func = add_assign_op<double, double>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing<Src>::value), void*>::type) [with Dst = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; Src = Eigen::TriangularView<const Eigen::Product<Eigen::CwiseBinaryOp<scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Func = add_assign_op<double, double>; typename enable_if<(! evaluator_assume_aliasing<Src>::value), void*>::type = void*; typename evaluator_traits<SrcXprType>::Shape = Eigen::TriangularShape]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/EigenBase.h:145:18:   required from ‘Derived& Eigen::DenseBase<Derived>::operator+=(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::TriangularView<const Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Derived = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply_lower_tri_self_transpose.hpp:31:0:   required from ‘auto stan::math::multiply_lower_tri_self_transpose(const T&) [with T = var_value<Eigen::Matrix<double, -1, -1> >; stan::require_rev_matrix_t<T>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cov_matrix_constrain.hpp:59:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2459:62: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
 2459 |           PacketBlock<Packet,(PacketSize%4)==0?4:PacketSize> kernel;
      |                                                              ^~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Product<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >, 6>, Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 0>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Product<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >, 6>, Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Product<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >, 6>, Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7:   required from ‘class Eigen::internal::dense_product_base<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >, 6>, Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 0, 8>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7:   required from ‘class Eigen::ProductImpl<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >, 6>, Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >, 6>, Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:99:96:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::HouseholderSequence<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   56 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Product<Eigen::TriangularView<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 2>, Eigen::Matrix<double, -1, -1>, 0>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Product<Eigen::TriangularView<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 2>, Eigen::Matrix<double, -1, -1>, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Product<Eigen::TriangularView<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 2>, Eigen::Matrix<double, -1, -1>, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7:   required from ‘class Eigen::internal::dense_product_base<Eigen::TriangularView<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 2>, Eigen::Matrix<double, -1, -1>, 0, 8>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7:   required from ‘class Eigen::ProductImpl<Eigen::TriangularView<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 2>, Eigen::Matrix<double, -1, -1>, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product<Eigen::TriangularView<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 2>, Eigen::Matrix<double, -1, -1>, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:101:66:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::HouseholderSequence<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Product<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 1>, Eigen::Matrix<double, -1, -1>, 0>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Product<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 1>, Eigen::Matrix<double, -1, -1>, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Product<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 1>, Eigen::Matrix<double, -1, -1>, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7:   required from ‘class Eigen::internal::dense_product_base<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 1>, Eigen::Matrix<double, -1, -1>, 0, 8>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7:   required from ‘class Eigen::ProductImpl<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 1>, Eigen::Matrix<double, -1, -1>, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 1>, Eigen::Matrix<double, -1, -1>, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:102:66:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::HouseholderSequence<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Product<Eigen::TriangularView<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 5>, Eigen::Matrix<double, -1, -1>, 0>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Product<Eigen::TriangularView<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 5>, Eigen::Matrix<double, -1, -1>, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Product<Eigen::TriangularView<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 5>, Eigen::Matrix<double, -1, -1>, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7:   required from ‘class Eigen::internal::dense_product_base<Eigen::TriangularView<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 5>, Eigen::Matrix<double, -1, -1>, 0, 8>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7:   required from ‘class Eigen::ProductImpl<Eigen::TriangularView<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 5>, Eigen::Matrix<double, -1, -1>, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product<Eigen::TriangularView<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 5>, Eigen::Matrix<double, -1, -1>, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:103:22:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::HouseholderSequence<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator<Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false> >’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8:   required from ‘struct Eigen::internal::evaluator<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:311:41:   required from ‘struct Eigen::internal::unary_evaluator<Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false> >, Eigen::internal::IndexBased, double>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8:   required from ‘struct Eigen::internal::evaluator<Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8:   required from ‘struct Eigen::internal::evaluator<const Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:41:   required from ‘struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false> >, const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:361:25:   required from ‘static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix<double, -1, -1>; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:526:51:   required from ‘Eigen::LDLT<_MatrixType, _UpLo>& Eigen::LDLT<MatrixType, UpLo>::compute(const Eigen::EigenBase<OtherDerived>&) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>; int _UpLo = 1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:120:14:   required from ‘Eigen::LDLT<MatrixType, UpLo>::LDLT(const Eigen::EigenBase<OtherDerived>&) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>; int _UpLo = 1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:683:10:   required from ‘const Eigen::LDLT<typename Eigen::DenseBase<Derived>::PlainObject> Eigen::MatrixBase<Derived>::ldlt() const [with Derived = Eigen::Matrix<double, -1, -1>; typename Eigen::DenseBase<Derived>::PlainObject = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:45:67:   required from ‘void stan::math::check_pos_definite(const char*, const char*, const EigMat&) [with EigMat = Eigen::Matrix<double, -1, -1>; stan::require_matrix_t<T>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:21:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
 1071 |     PacketAlignment = unpacket_traits<PacketScalar>::alignment,
      |                                                      ^~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator<Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>, -1, 1, true> >’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8:   required from ‘struct Eigen::internal::evaluator<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>, -1, 1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78:   required from ‘struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false> >, const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8:   required from ‘struct Eigen::internal::evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false> >, const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>, -1, 1, true> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7:   required from ‘class Eigen::internal::redux_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false> >, const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>, -1, 1, true> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:414:17:   required from ‘typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false> >, const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>, -1, 1, true> >; typename Eigen::internal::traits<T>::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:361:25:   required from ‘static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix<double, -1, -1>; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:526:51:   required from ‘Eigen::LDLT<_MatrixType, _UpLo>& Eigen::LDLT<MatrixType, UpLo>::compute(const Eigen::EigenBase<OtherDerived>&) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>; int _UpLo = 1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:120:14:   required from ‘Eigen::LDLT<MatrixType, UpLo>::LDLT(const Eigen::EigenBase<OtherDerived>&) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>; int _UpLo = 1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:683:10:   required from ‘const Eigen::LDLT<typename Eigen::DenseBase<Derived>::PlainObject> Eigen::MatrixBase<Derived>::ldlt() const [with Derived = Eigen::Matrix<double, -1, -1>; typename Eigen::DenseBase<Derived>::PlainObject = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/err/check_pos_definite.hpp:45:67:   required from ‘void stan::math::check_pos_definite(const char*, const char*, const EigMat&) [with EigMat = Eigen::Matrix<double, -1, -1>; stan::require_matrix_t<T>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:21:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator<Eigen::Block<const Eigen::Block<const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, -1, 1, false>, -1, 1, true> >’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8:   required from ‘struct Eigen::internal::evaluator<const Eigen::Block<const Eigen::Block<const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, -1, 1, false>, -1, 1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78:   required from ‘struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, 1, -1, false> >, const Eigen::Block<const Eigen::Block<const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, -1, 1, false>, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8:   required from ‘struct Eigen::internal::evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, 1, -1, false> >, const Eigen::Block<const Eigen::Block<const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, -1, 1, false>, -1, 1, true> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7:   required from ‘class Eigen::internal::redux_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, 1, -1, false> >, const Eigen::Block<const Eigen::Block<const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, -1, 1, false>, -1, 1, true> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:414:17:   required from ‘typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, 1, -1, false> >, const Eigen::Block<const Eigen::Block<const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, -1, 1, false>, -1, 1, true> >; typename Eigen::internal::traits<T>::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:37:0:   required from ‘Scalar stan::optimization::BFGSUpdate_HInv<Scalar, DimAtCompile>::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0:   required from ‘int stan::optimization::BFGSMinimizer<FunctorType, QNUpdateType, Scalar, DimAtCompile>::step() [with FunctorType = stan::optimization::ModelAdaptor<model_shrinkage_namespace::model_shrinkage, false>; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0:   required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage; bool jacobian = false]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:15:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator<Eigen::Block<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, 1, -1, false>, 1, -1, true> >’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8:   required from ‘struct Eigen::internal::evaluator<const Eigen::Block<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, 1, -1, false>, 1, -1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:311:41:   required from ‘struct Eigen::internal::unary_evaluator<Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, 1, -1, false>, 1, -1, true> >, Eigen::internal::IndexBased, double>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8:   required from ‘struct Eigen::internal::evaluator<Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, 1, -1, false>, 1, -1, true> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8:   required from ‘struct Eigen::internal::evaluator<const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, 1, -1, false>, 1, -1, true> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:41:   required from ‘struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, 1, -1, false>, 1, -1, true> >, const Eigen::Block<const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, -1, 1, false> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:37:0:   required from ‘Scalar stan::optimization::BFGSUpdate_HInv<Scalar, DimAtCompile>::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0:   required from ‘int stan::optimization::BFGSMinimizer<FunctorType, QNUpdateType, Scalar, DimAtCompile>::step() [with FunctorType = stan::optimization::ModelAdaptor<model_shrinkage_namespace::model_shrinkage, false>; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0:   required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage; bool jacobian = false]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:15:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h: In instantiation of ‘struct Eigen::internal::gemm_pack_rhs<double, long int, Eigen::internal::const_blas_data_mapper<double, long int, 1>, 4, 1, false, true>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularSolverMatrix.h:233:85:   required from ‘static void Eigen::internal::triangular_solve_matrix<Scalar, Index, 2, Mode, Conjugate, TriStorageOrder, 0, OtherInnerStride>::run(Index, Index, const Scalar*, Index, Scalar*, Index, Index, Eigen::internal::level3_blocking<Scalar, Scalar>&) [with Scalar = double; Index = long int; int Mode = 2; bool Conjugate = false; int TriStorageOrder = 1; int OtherInnerStride = 1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/SolveTriangular.h:102:12:   required from ‘static void Eigen::internal::triangular_solver_selector<Lhs, Rhs, Side, Mode, 0, -1>::run(const Lhs&, Rhs&) [with Lhs = const Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >; Rhs = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; int Side = 2; int Mode = 2]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/SolveTriangular.h:182:21:   required from ‘void Eigen::TriangularViewImpl<_MatrixType, _Mode, Eigen::Dense>::solveInPlace(const Eigen::MatrixBase<OtherDerived>&) const [with int Side = 2; OtherDerived = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; _MatrixType = const Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >; unsigned int _Mode = 2]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:364:96:   required from ‘static Eigen::Index Eigen::internal::llt_inplace<Scalar, 1>::blocked(MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>; Scalar = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:408:68:   required from ‘static bool Eigen::internal::LLT_Traits<MatrixType, 1>::inplace_decomposition(MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:456:42:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/run_adaptive_sampler.hpp:57:0:   required from ‘void stan::services::util::run_adaptive_sampler(Sampler&, Model&, std::vector<double>&, int, int, int, int, bool, RNG&, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, size_t, size_t) [with Sampler = stan::mcmc::adapt_dense_e_nuts<model_shrinkage_namespace::model_shrinkage, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> > >; Model = model_shrinkage_namespace::model_shrinkage; RNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; size_t = long unsigned int]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:97:0:   required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:150:0:   required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:638:0:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:15:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2504:50: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
 2504 |   typedef typename unpacket_traits<Packet>::half HalfPacket;
      |                                                  ^~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2505:82: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
 2505 |   typedef typename unpacket_traits<typename unpacket_traits<Packet>::half>::half QuarterPacket;
      |                                                                                  ^~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2505:82: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2508:56: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
 2508 |          HalfPacketSize = unpacket_traits<HalfPacket>::size,
      |                                                        ^~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2508:56: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2509:70: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
 2509 |                  QuarterPacketSize = unpacket_traits<QuarterPacket>::size};
      |                                                                      ^~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2509:70: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2509:70: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:457:59:   required from ‘static void Eigen::internal::triangular_product_impl<Mode, LhsIsTriangular, Lhs, false, Rhs, false>::run(Dest&, const Lhs&, const Rhs&, const typename Dest::Scalar&) [with Dest = Eigen::Matrix<double, -1, -1>; int Mode = 1; bool LhsIsTriangular = true; Lhs = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; Rhs = Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >; typename Dest::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:770:14:   [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123:20:   required from ‘stan::math::arena_matrix<MatrixType, typename std::enable_if<stan::is_eigen_dense_base<typename std::decay<_Tp>::type>::value, void>::type>& stan::math::arena_matrix<MatrixType, typename std::enable_if<stan::is_eigen_dense_base<typename std::decay<_Tp>::type>::value, void>::type>::operator=(const T&) [with T = Eigen::Product<Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0>; MatrixType = Eigen::Matrix<double, -1, -1>; typename std::enable_if<stan::is_eigen_dense_base<typename std::decay<_Tp>::type>::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:68:11:   required from ‘stan::math::arena_matrix<MatrixType, typename std::enable_if<stan::is_eigen_dense_base<typename std::decay<_Tp>::type>::value, void>::type>::arena_matrix(const T&) [with T = Eigen::Product<Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_eigen_t<T>* <anonymous> = 0; MatrixType = Eigen::Matrix<double, -1, -1>; typename std::enable_if<stan::is_eigen_dense_base<typename std::decay<_Tp>::type>::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/vari.hpp:722:9:   required from ‘stan::math::vari_value<T, typename std::enable_if<stan::math::conjunction<std::is_same<typename std::decay<_Tp>::type, typename stan::plain_type<T, void>::type>, stan::is_eigen_dense_base<T> >::value, void>::type>::vari_value(const S&, bool) [with S = Eigen::Product<Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_assignable_t<T, S>* <anonymous> = 0; T = Eigen::Matrix<double, -1, -1>; typename std::enable_if<stan::math::conjunction<std::is_same<typename std::decay<_Tp>::type, typename stan::plain_type<T, void>::type>, stan::is_eigen_dense_base<T> >::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix<double, -1, -1>; typename stan::plain_type<T>::type = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/var.hpp:366:26:   required from ‘stan::math::var_value<T, typename std::enable_if<std::integral_constant<bool, ((stan::is_eigen<T>::value || stan::is_kernel_expression_and_not_scalar<T>::value) && std::is_floating_point<typename stan::value_type<T>::type>::value)>::value, void>::type>::var_value(S&&) [with S = const Eigen::Product<Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_assignable_t<T, S>* <anonymous> = 0; T = Eigen::Matrix<double, -1, -1>; typename std::enable_if<std::integral_constant<bool, ((stan::is_eigen<T>::value || stan::is_kernel_expression_and_not_scalar<T>::value) && std::is_floating_point<typename stan::value_type<T>::type>::value)>::value, void>::type = void; typename stan::value_type<T>::type = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply_lower_tri_self_transpose.hpp:27:0:   required from ‘auto stan::math::multiply_lower_tri_self_transpose(const T&) [with T = var_value<Eigen::Matrix<double, -1, -1> >; stan::require_rev_matrix_t<T>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cov_matrix_constrain.hpp:59:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   56 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, -1, -1, true>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, -1, -1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, -1, -1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:172:103:   required from ‘class Eigen::internal::BlockImpl_dense<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, -1, -1, true, false>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   required from ‘class Eigen::BlockImpl<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, -1, -1, true, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81:   required from ‘class Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, -1, -1, true>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:457:74:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123:20:   required from ‘stan::math::arena_matrix<MatrixType, typename std::enable_if<stan::is_eigen_dense_base<typename std::decay<_Tp>::type>::value, void>::type>& stan::math::arena_matrix<MatrixType, typename std::enable_if<stan::is_eigen_dense_base<typename std::decay<_Tp>::type>::value, void>::type>::operator=(const T&) [with T = Eigen::Product<Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0>; MatrixType = Eigen::Matrix<double, -1, -1>; typename std::enable_if<stan::is_eigen_dense_base<typename std::decay<_Tp>::type>::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:68:11:   required from ‘stan::math::arena_matrix<MatrixType, typename std::enable_if<stan::is_eigen_dense_base<typename std::decay<_Tp>::type>::value, void>::type>::arena_matrix(const T&) [with T = Eigen::Product<Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_eigen_t<T>* <anonymous> = 0; MatrixType = Eigen::Matrix<double, -1, -1>; typename std::enable_if<stan::is_eigen_dense_base<typename std::decay<_Tp>::type>::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/vari.hpp:722:9:   required from ‘stan::math::vari_value<T, typename std::enable_if<stan::math::conjunction<std::is_same<typename std::decay<_Tp>::type, typename stan::plain_type<T, void>::type>, stan::is_eigen_dense_base<T> >::value, void>::type>::vari_value(const S&, bool) [with S = Eigen::Product<Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_assignable_t<T, S>* <anonymous> = 0; T = Eigen::Matrix<double, -1, -1>; typename std::enable_if<stan::math::conjunction<std::is_same<typename std::decay<_Tp>::type, typename stan::plain_type<T, void>::type>, stan::is_eigen_dense_base<T> >::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix<double, -1, -1>; typename stan::plain_type<T>::type = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/var.hpp:366:26:   required from ‘stan::math::var_value<T, typename std::enable_if<std::integral_constant<bool, ((stan::is_eigen<T>::value || stan::is_kernel_expression_and_not_scalar<T>::value) && std::is_floating_point<typename stan::value_type<T>::type>::value)>::value, void>::type>::var_value(S&&) [with S = const Eigen::Product<Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_assignable_t<T, S>* <anonymous> = 0; T = Eigen::Matrix<double, -1, -1>; typename std::enable_if<std::integral_constant<bool, ((stan::is_eigen<T>::value || stan::is_kernel_expression_and_not_scalar<T>::value) && std::is_floating_point<typename stan::value_type<T>::type>::value)>::value, void>::type = void; typename stan::value_type<T>::type = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply_lower_tri_self_transpose.hpp:27:0:   required from ‘auto stan::math::multiply_lower_tri_self_transpose(const T&) [with T = var_value<Eigen::Matrix<double, -1, -1> >; stan::require_rev_matrix_t<T>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cov_matrix_constrain.hpp:59:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, -1, true>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, -1, true>, 2>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, -1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, -1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, -1, true>, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7:   required from ‘class Eigen::internal::BlockImpl_dense<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, -1, true, true>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   [ skipping 14 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123:20:   required from ‘stan::math::arena_matrix<MatrixType, typename std::enable_if<stan::is_eigen_dense_base<typename std::decay<_Tp>::type>::value, void>::type>& stan::math::arena_matrix<MatrixType, typename std::enable_if<stan::is_eigen_dense_base<typename std::decay<_Tp>::type>::value, void>::type>::operator=(const T&) [with T = Eigen::Product<Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0>; MatrixType = Eigen::Matrix<double, -1, -1>; typename std::enable_if<stan::is_eigen_dense_base<typename std::decay<_Tp>::type>::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:68:11:   required from ‘stan::math::arena_matrix<MatrixType, typename std::enable_if<stan::is_eigen_dense_base<typename std::decay<_Tp>::type>::value, void>::type>::arena_matrix(const T&) [with T = Eigen::Product<Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_eigen_t<T>* <anonymous> = 0; MatrixType = Eigen::Matrix<double, -1, -1>; typename std::enable_if<stan::is_eigen_dense_base<typename std::decay<_Tp>::type>::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/vari.hpp:722:9:   required from ‘stan::math::vari_value<T, typename std::enable_if<stan::math::conjunction<std::is_same<typename std::decay<_Tp>::type, typename stan::plain_type<T, void>::type>, stan::is_eigen_dense_base<T> >::value, void>::type>::vari_value(const S&, bool) [with S = Eigen::Product<Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_assignable_t<T, S>* <anonymous> = 0; T = Eigen::Matrix<double, -1, -1>; typename std::enable_if<stan::math::conjunction<std::is_same<typename std::decay<_Tp>::type, typename stan::plain_type<T, void>::type>, stan::is_eigen_dense_base<T> >::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix<double, -1, -1>; typename stan::plain_type<T>::type = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/var.hpp:366:26:   required from ‘stan::math::var_value<T, typename std::enable_if<std::integral_constant<bool, ((stan::is_eigen<T>::value || stan::is_kernel_expression_and_not_scalar<T>::value) && std::is_floating_point<typename stan::value_type<T>::type>::value)>::value, void>::type>::var_value(S&&) [with S = const Eigen::Product<Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_assignable_t<T, S>* <anonymous> = 0; T = Eigen::Matrix<double, -1, -1>; typename std::enable_if<std::integral_constant<bool, ((stan::is_eigen<T>::value || stan::is_kernel_expression_and_not_scalar<T>::value) && std::is_floating_point<typename stan::value_type<T>::type>::value)>::value, void>::type = void; typename stan::value_type<T>::type = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply_lower_tri_self_transpose.hpp:27:0:   required from ‘auto stan::math::multiply_lower_tri_self_transpose(const T&) [with T = var_value<Eigen::Matrix<double, -1, -1> >; stan::require_rev_matrix_t<T>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cov_matrix_constrain.hpp:59:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, -1, true> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, -1, true> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, -1, true> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, -1, true>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, -1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:462:59:   required from ‘static void Eigen::internal::triangular_product_impl<Mode, LhsIsTriangular, Lhs, false, Rhs, false>::run(Dest&, const Lhs&, const Rhs&, const typename Dest::Scalar&) [with Dest = Eigen::Matrix<double, -1, -1>; int Mode = 1; bool LhsIsTriangular = true; Lhs = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; Rhs = Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >; typename Dest::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:770:14:   [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123:20:   required from ‘stan::math::arena_matrix<MatrixType, typename std::enable_if<stan::is_eigen_dense_base<typename std::decay<_Tp>::type>::value, void>::type>& stan::math::arena_matrix<MatrixType, typename std::enable_if<stan::is_eigen_dense_base<typename std::decay<_Tp>::type>::value, void>::type>::operator=(const T&) [with T = Eigen::Product<Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0>; MatrixType = Eigen::Matrix<double, -1, -1>; typename std::enable_if<stan::is_eigen_dense_base<typename std::decay<_Tp>::type>::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:68:11:   required from ‘stan::math::arena_matrix<MatrixType, typename std::enable_if<stan::is_eigen_dense_base<typename std::decay<_Tp>::type>::value, void>::type>::arena_matrix(const T&) [with T = Eigen::Product<Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_eigen_t<T>* <anonymous> = 0; MatrixType = Eigen::Matrix<double, -1, -1>; typename std::enable_if<stan::is_eigen_dense_base<typename std::decay<_Tp>::type>::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/vari.hpp:722:9:   required from ‘stan::math::vari_value<T, typename std::enable_if<stan::math::conjunction<std::is_same<typename std::decay<_Tp>::type, typename stan::plain_type<T, void>::type>, stan::is_eigen_dense_base<T> >::value, void>::type>::vari_value(const S&, bool) [with S = Eigen::Product<Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_assignable_t<T, S>* <anonymous> = 0; T = Eigen::Matrix<double, -1, -1>; typename std::enable_if<stan::math::conjunction<std::is_same<typename std::decay<_Tp>::type, typename stan::plain_type<T, void>::type>, stan::is_eigen_dense_base<T> >::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix<double, -1, -1>; typename stan::plain_type<T>::type = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/var.hpp:366:26:   required from ‘stan::math::var_value<T, typename std::enable_if<std::integral_constant<bool, ((stan::is_eigen<T>::value || stan::is_kernel_expression_and_not_scalar<T>::value) && std::is_floating_point<typename stan::value_type<T>::type>::value)>::value, void>::type>::var_value(S&&) [with S = const Eigen::Product<Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_assignable_t<T, S>* <anonymous> = 0; T = Eigen::Matrix<double, -1, -1>; typename std::enable_if<std::integral_constant<bool, ((stan::is_eigen<T>::value || stan::is_kernel_expression_and_not_scalar<T>::value) && std::is_floating_point<typename stan::value_type<T>::type>::value)>::value, void>::type = void; typename stan::value_type<T>::type = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply_lower_tri_self_transpose.hpp:27:0:   required from ‘auto stan::math::multiply_lower_tri_self_transpose(const T&) [with T = var_value<Eigen::Matrix<double, -1, -1> >; stan::require_rev_matrix_t<T>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cov_matrix_constrain.hpp:59:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 4, 1> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 4, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 4, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7:   required from ‘class Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 4, 1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:347:30:   required from ‘Derived& Eigen::DenseBase<Derived>::setConstant(const Scalar&) [with Derived = Eigen::Diagonal<Eigen::Matrix<double, 4, 4>, 0>; Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:548:10:   required from ‘Derived& Eigen::DenseBase<Derived>::setZero() [with Derived = Eigen::Diagonal<Eigen::Matrix<double, 4, 4>, 0>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:303:42:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/TriangularMatrix.h:856:103:   required from ‘static void Eigen::internal::Assignment<DstXprType, SrcXprType, Functor, Eigen::internal::Triangular2Dense>::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; SrcXprType = Eigen::TriangularView<const Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Functor = Eigen::internal::add_assign_op<double, double>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; Src = Eigen::TriangularView<const Eigen::Product<Eigen::CwiseBinaryOp<scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Func = add_assign_op<double, double>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing<Src>::value), void*>::type) [with Dst = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; Src = Eigen::TriangularView<const Eigen::Product<Eigen::CwiseBinaryOp<scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Func = add_assign_op<double, double>; typename enable_if<(! evaluator_assume_aliasing<Src>::value), void*>::type = void*; typename evaluator_traits<SrcXprType>::Shape = Eigen::TriangularShape]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/EigenBase.h:145:18:   required from ‘Derived& Eigen::DenseBase<Derived>::operator+=(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::TriangularView<const Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Derived = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply_lower_tri_self_transpose.hpp:31:0:   required from ‘auto stan::math::multiply_lower_tri_self_transpose(const T&) [with T = var_value<Eigen::Matrix<double, -1, -1> >; stan::require_rev_matrix_t<T>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cov_matrix_constrain.hpp:59:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 3>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34:   [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::HouseholderSequence<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false>, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false>, 3>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false>, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34:   [ skipping 16 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::HouseholderSequence<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, 2>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7:   required from ‘class Eigen::internal::BlockImpl_dense<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true, true>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::HouseholderSequence<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false>, 2>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false>, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7:   required from ‘class Eigen::internal::BlockImpl_dense<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false, true>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   [ skipping 14 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::HouseholderSequence<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> >, 2>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37:   required from ‘class Eigen::TransposeImpl<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   required from ‘class Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:63:90:   [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::HouseholderSequence<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:63:57:   required from ‘void Eigen::internal::make_block_householder_triangular_factor(TriangularFactorType&, const VectorsType&, const CoeffsType&) [with TriangularFactorType = Eigen::Matrix<double, -1, -1, 1, -1, -1>; VectorsType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; CoeffsType = Eigen::VectorBlock<const Eigen::Matrix<double, -1, 1>, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:92:55:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::HouseholderSequence<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 2>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7:   required from ‘class Eigen::internal::BlockImpl_dense<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false, true>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::HouseholderSequence<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > >, Eigen::TriangularView<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 5>, 0>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > >, Eigen::TriangularView<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 5>, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > >, Eigen::TriangularView<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 5>, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7:   required from ‘class Eigen::internal::dense_product_base<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > >, Eigen::TriangularView<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 5>, 0, 7>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7:   required from ‘class Eigen::ProductImpl<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > >, Eigen::TriangularView<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 5>, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > >, Eigen::TriangularView<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 5>, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:64:57:   [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::HouseholderSequence<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:73:50:   required from ‘void Eigen::internal::make_block_householder_triangular_factor(TriangularFactorType&, const VectorsType&, const CoeffsType&) [with TriangularFactorType = Eigen::Matrix<double, -1, -1, 1, -1, -1>; VectorsType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; CoeffsType = Eigen::VectorBlock<const Eigen::Matrix<double, -1, 1>, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:92:55:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::HouseholderSequence<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, -1, 1, false>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, -1, 1, false>, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, -1, 1, false>, 3>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, -1, 1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, -1, 1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, -1, 1, false>, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34:   [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:40:0:   required from ‘Scalar stan::optimization::BFGSUpdate_HInv<Scalar, DimAtCompile>::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0:   required from ‘int stan::optimization::BFGSMinimizer<FunctorType, QNUpdateType, Scalar, DimAtCompile>::step() [with FunctorType = stan::optimization::ModelAdaptor<model_shrinkage_namespace::model_shrinkage, false>; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0:   required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage; bool jacobian = false]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:15:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Product<Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, -1>, 0>, const Eigen::Block<const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, -1, 1, false>, 0>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Product<Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, -1>, 0>, const Eigen::Block<const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, -1, 1, false>, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Product<Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, -1>, 0>, const Eigen::Block<const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, -1, 1, false>, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7:   required from ‘class Eigen::internal::dense_product_base<Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, -1>, 0>, const Eigen::Block<const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, -1, 1, false>, 0, 7>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7:   required from ‘class Eigen::ProductImpl<Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, -1>, 0>, const Eigen::Block<const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, -1, 1, false>, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product<Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, -1>, 0>, const Eigen::Block<const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, -1, 1, false>, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:345:45:   [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:40:0:   required from ‘Scalar stan::optimization::BFGSUpdate_HInv<Scalar, DimAtCompile>::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0:   required from ‘int stan::optimization::BFGSMinimizer<FunctorType, QNUpdateType, Scalar, DimAtCompile>::step() [with FunctorType = stan::optimization::ModelAdaptor<model_shrinkage_namespace::model_shrinkage, false>; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0:   required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage; bool jacobian = false]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:15:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Product<const Eigen::Block<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, -1>, 0>, 1, -1, false>, Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, 0>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Product<const Eigen::Block<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, -1>, 0>, 1, -1, false>, Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Product<const Eigen::Block<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, -1>, 0>, 1, -1, false>, Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7:   required from ‘class Eigen::internal::dense_product_base<const Eigen::Block<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, -1>, 0>, 1, -1, false>, Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, 0, 7>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7:   required from ‘class Eigen::ProductImpl<const Eigen::Block<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, -1>, 0>, 1, -1, false>, Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product<const Eigen::Block<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, -1>, 0>, 1, -1, false>, Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:345:45:   [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:40:0:   required from ‘Scalar stan::optimization::BFGSUpdate_HInv<Scalar, DimAtCompile>::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0:   required from ‘int stan::optimization::BFGSMinimizer<FunctorType, QNUpdateType, Scalar, DimAtCompile>::step() [with FunctorType = stan::optimization::ModelAdaptor<model_shrinkage_namespace::model_shrinkage, false>; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0:   required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage; bool jacobian = false]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:15:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, -1>, 0>, 1, -1, false>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Block<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, -1>, 0>, 1, -1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Block<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, -1>, 0>, 1, -1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:172:103:   required from ‘class Eigen::internal::BlockImpl_dense<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, -1>, 0>, 1, -1, false, false>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   required from ‘class Eigen::BlockImpl<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, -1>, 0>, 1, -1, false, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81:   required from ‘class Eigen::Block<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, -1>, 0>, 1, -1, false>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:113:15:   [ skipping 14 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:40:0:   required from ‘Scalar stan::optimization::BFGSUpdate_HInv<Scalar, DimAtCompile>::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0:   required from ‘int stan::optimization::BFGSMinimizer<FunctorType, QNUpdateType, Scalar, DimAtCompile>::step() [with FunctorType = stan::optimization::ModelAdaptor<model_shrinkage_namespace::model_shrinkage, false>; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0:   required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage; bool jacobian = false]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:15:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator<Eigen::Block<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, -1>, 0>, 1, -1, false> >’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8:   required from ‘struct Eigen::internal::evaluator<const Eigen::Block<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, -1>, 0>, 1, -1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:372:102:   required from ‘struct Eigen::internal::plain_object_eval<const Eigen::Block<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, -1>, 0>, 1, -1, false>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:369:45:   required from ‘struct Eigen::internal::generic_product_impl<const Eigen::Block<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, -1>, 0>, 1, -1, false>, Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, Eigen::DenseShape, Eigen::DenseShape, 7>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:486:24:   required from ‘static void Eigen::internal::generic_product_impl<Lhs, Rhs, Eigen::DenseShape, Eigen::DenseShape, 8>::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Matrix<double, -1, -1, 1, -1, -1>; Lhs = Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, -1>, 0>; Rhs = Eigen::Transpose<Eigen::Matrix<double, -1, -1> >; Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:445:20:   required from ‘static void Eigen::internal::generic_product_impl<Lhs, Rhs, Eigen::DenseShape, Eigen::DenseShape, 8>::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix<double, -1, -1, 1, -1, -1>; Lhs = Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, -1>, 0>; Rhs = Eigen::Transpose<Eigen::Matrix<double, -1, -1> >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:40:0:   required from ‘Scalar stan::optimization::BFGSUpdate_HInv<Scalar, DimAtCompile>::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0:   required from ‘int stan::optimization::BFGSMinimizer<FunctorType, QNUpdateType, Scalar, DimAtCompile>::step() [with FunctorType = stan::optimization::ModelAdaptor<model_shrinkage_namespace::model_shrinkage, false>; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0:   required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage; bool jacobian = false]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:15:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
 1071 |     PacketAlignment = unpacket_traits<PacketScalar>::alignment,
      |                                                      ^~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false> >’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8:   required from ‘struct Eigen::internal::evaluator<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:564:45:   required from ‘struct Eigen::internal::unary_evaluator<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false> >, Eigen::internal::IndexBased, double>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8:   required from ‘struct Eigen::internal::evaluator<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7:   required from ‘class Eigen::internal::redux_evaluator<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:414:17:   required from ‘typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false> >; typename Eigen::internal::traits<T>::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/run_adaptive_sampler.hpp:57:0:   required from ‘void stan::services::util::run_adaptive_sampler(Sampler&, Model&, std::vector<double>&, int, int, int, int, bool, RNG&, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, size_t, size_t) [with Sampler = stan::mcmc::adapt_dense_e_nuts<model_shrinkage_namespace::model_shrinkage, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> > >; Model = model_shrinkage_namespace::model_shrinkage; RNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; size_t = long unsigned int]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:97:0:   required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:150:0:   required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:638:0:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:15:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false> >’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:372:102:   required from ‘struct Eigen::internal::plain_object_eval<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:369:45:   required from ‘struct Eigen::internal::generic_product_impl<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, Eigen::Transpose<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false> >, Eigen::DenseShape, Eigen::DenseShape, 7>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:178:42:   required from ‘static void Eigen::internal::Assignment<DstXprType, Eigen::Product<Lhs, Rhs, Options>, Eigen::internal::sub_assign_op<Scalar, Scalar>, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::sub_assign_op<Scalar, Scalar>&) [with DstXprType = Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, false>; Lhs = Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>; Rhs = Eigen::Transpose<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false> >; int Options = 0; Scalar = double; SrcXprType = Eigen::Product<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, Eigen::Transpose<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false> >, 0>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, false>; Src = Eigen::Product<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, Eigen::Transpose<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false> >, 0>; Func = sub_assign_op<double, double>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/NoAlias.h:59:31:   required from ‘ExpressionType& Eigen::NoAlias<ExpressionType, StorageBase>::operator-=(const StorageBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, Eigen::Transpose<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false> >, 0>; ExpressionType = Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, false>; StorageBase = Eigen::MatrixBase]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:332:38:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/run_adaptive_sampler.hpp:57:0:   required from ‘void stan::services::util::run_adaptive_sampler(Sampler&, Model&, std::vector<double>&, int, int, int, int, bool, RNG&, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, size_t, size_t) [with Sampler = stan::mcmc::adapt_dense_e_nuts<model_shrinkage_namespace::model_shrinkage, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> > >; Model = model_shrinkage_namespace::model_shrinkage; RNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; size_t = long unsigned int]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:97:0:   required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:150:0:   required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:638:0:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:15:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h: In instantiation of ‘void Eigen::internal::gemm_pack_lhs<Scalar, Index, DataMapper, Pack1, Pack2, Packet, 0, Conjugate, PanelMode>::operator()(Scalar*, const DataMapper&, Index, Index, Index, Index) [with Scalar = double; Index = long int; DataMapper = Eigen::internal::blas_data_mapper<double, long int, 0, 0, 1>; int Pack1 = 4; int Pack2 = 2; Packet = __vector(2) double; bool Conjugate = false; bool PanelMode = true]’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularSolverMatrix.h:319:27:   required from ‘static void Eigen::internal::triangular_solve_matrix<Scalar, Index, 2, Mode, Conjugate, TriStorageOrder, 0, OtherInnerStride>::run(Index, Index, const Scalar*, Index, Scalar*, Index, Index, Eigen::internal::level3_blocking<Scalar, Scalar>&) [with Scalar = double; Index = long int; int Mode = 2; bool Conjugate = false; int TriStorageOrder = 1; int OtherInnerStride = 1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/SolveTriangular.h:102:12:   required from ‘static void Eigen::internal::triangular_solver_selector<Lhs, Rhs, Side, Mode, 0, -1>::run(const Lhs&, Rhs&) [with Lhs = const Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >; Rhs = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; int Side = 2; int Mode = 2]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/SolveTriangular.h:182:21:   required from ‘void Eigen::TriangularViewImpl<_MatrixType, _Mode, Eigen::Dense>::solveInPlace(const Eigen::MatrixBase<OtherDerived>&) const [with int Side = 2; OtherDerived = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; _MatrixType = const Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >; unsigned int _Mode = 2]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:364:96:   required from ‘static Eigen::Index Eigen::internal::llt_inplace<Scalar, 1>::blocked(MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>; Scalar = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:408:68:   required from ‘static bool Eigen::internal::LLT_Traits<MatrixType, 1>::inplace_decomposition(MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:456:42:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/run_adaptive_sampler.hpp:57:0:   required from ‘void stan::services::util::run_adaptive_sampler(Sampler&, Model&, std::vector<double>&, int, int, int, int, bool, RNG&, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, size_t, size_t) [with Sampler = stan::mcmc::adapt_dense_e_nuts<model_shrinkage_namespace::model_shrinkage, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> > >; Model = model_shrinkage_namespace::model_shrinkage; RNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; size_t = long unsigned int]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:97:0:   required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:150:0:   required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:638:0:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:15:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2100:82: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
 2100 |   typedef typename unpacket_traits<typename unpacket_traits<Packet>::half>::half QuarterPacket;
      |                                                                                  ^~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2102:56: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
 2102 |          HalfPacketSize = unpacket_traits<HalfPacket>::size,
      |                                                        ^~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2103:62: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
 2103 |          QuarterPacketSize = unpacket_traits<QuarterPacket>::size,
      |                                                              ^~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2103:62: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:457:59:   required from ‘static void Eigen::internal::triangular_product_impl<Mode, LhsIsTriangular, Lhs, false, Rhs, false>::run(Dest&, const Lhs&, const Rhs&, const typename Dest::Scalar&) [with Dest = Eigen::Matrix<double, -1, -1>; int Mode = 2; bool LhsIsTriangular = false; Lhs = Eigen::Matrix<double, -1, -1>; Rhs = const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >; typename Dest::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:783:113:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19:   required from ‘Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Transpose<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0> >; Derived = Eigen::Matrix<double, -1, -1, 1, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::Transpose<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0> >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 1; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/to_ref.hpp:18:27:   required from ‘stan::ref_type_t<T&&> stan::math::to_ref(T&&) [with T = const Eigen::Transpose<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0> >&; stan::ref_type_t<T&&> = Eigen::Matrix<double, -1, -1, 1, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:27:29:   required from ‘Eigen::Matrix<typename stan::value_type<T>::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0> >; stan::require_eigen_vt<std::is_arithmetic, T>* <anonymous> = 0; typename stan::value_type<T>::type = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20:   required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0>; stan::require_eigen_t<T_desired>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   56 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> > >, -1, -1, true>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> > >, -1, -1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> > >, -1, -1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:172:103:   required from ‘class Eigen::internal::BlockImpl_dense<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> > >, -1, -1, true, false>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   required from ‘class Eigen::BlockImpl<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> > >, -1, -1, true, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81:   required from ‘class Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> > >, -1, -1, true>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:457:74:   [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19:   required from ‘Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Transpose<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0> >; Derived = Eigen::Matrix<double, -1, -1, 1, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::Transpose<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0> >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 1; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/to_ref.hpp:18:27:   required from ‘stan::ref_type_t<T&&> stan::math::to_ref(T&&) [with T = const Eigen::Transpose<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0> >&; stan::ref_type_t<T&&> = Eigen::Matrix<double, -1, -1, 1, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:27:29:   required from ‘Eigen::Matrix<typename stan::value_type<T>::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0> >; stan::require_eigen_vt<std::is_arithmetic, T>* <anonymous> = 0; typename stan::value_type<T>::type = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20:   required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0>; stan::require_eigen_t<T_desired>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, -1, true>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, -1, true>, 2>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, -1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, -1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, -1, true>, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7:   required from ‘class Eigen::internal::BlockImpl_dense<const Eigen::Matrix<double, -1, -1>, -1, -1, true, true>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19:   required from ‘Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Transpose<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0> >; Derived = Eigen::Matrix<double, -1, -1, 1, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::Transpose<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0> >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 1; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/to_ref.hpp:18:27:   required from ‘stan::ref_type_t<T&&> stan::math::to_ref(T&&) [with T = const Eigen::Transpose<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0> >&; stan::ref_type_t<T&&> = Eigen::Matrix<double, -1, -1, 1, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:27:29:   required from ‘Eigen::Matrix<typename stan::value_type<T>::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0> >; stan::require_eigen_vt<std::is_arithmetic, T>* <anonymous> = 0; typename stan::value_type<T>::type = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20:   required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0>; stan::require_eigen_t<T_desired>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, -1, true> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, -1, true> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, -1, true> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, -1, true>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, -1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:462:59:   required from ‘static void Eigen::internal::triangular_product_impl<Mode, LhsIsTriangular, Lhs, false, Rhs, false>::run(Dest&, const Lhs&, const Rhs&, const typename Dest::Scalar&) [with Dest = Eigen::Matrix<double, -1, -1>; int Mode = 2; bool LhsIsTriangular = false; Lhs = Eigen::Matrix<double, -1, -1>; Rhs = const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >; typename Dest::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:783:113:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19:   required from ‘Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Transpose<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0> >; Derived = Eigen::Matrix<double, -1, -1, 1, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::Transpose<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0> >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 1; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/to_ref.hpp:18:27:   required from ‘stan::ref_type_t<T&&> stan::math::to_ref(T&&) [with T = const Eigen::Transpose<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0> >&; stan::ref_type_t<T&&> = Eigen::Matrix<double, -1, -1, 1, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:27:29:   required from ‘Eigen::Matrix<typename stan::value_type<T>::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0> >; stan::require_eigen_vt<std::is_arithmetic, T>* <anonymous> = 0; typename stan::value_type<T>::type = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20:   required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0>; stan::require_eigen_t<T_desired>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet<double, 64>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57:   required from ‘struct Eigen::internal::traits<Eigen::Matrix<double, 8, 8, 0, 8, 8> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<double, 8, 8, 0, 8, 8> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from ‘class Eigen::Matrix<double, 8, 8, 0, 8, 8>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:150:68:   required from ‘static void Eigen::internal::product_triangular_matrix_matrix<Scalar, Index, Mode, true, LhsStorageOrder, ConjugateLhs, RhsStorageOrder, ConjugateRhs, 0, ResInnerStride, Version>::run(Index, Index, Index, const Scalar*, Index, const Scalar*, Index, Scalar*, Index, Index, const Scalar&, Eigen::internal::level3_blocking<Scalar, Scalar>&) [with Scalar = double; Index = long int; int Mode = 1; int LhsStorageOrder = 0; bool ConjugateLhs = false; int RhsStorageOrder = 1; bool ConjugateRhs = false; int ResInnerStride = 1; int Version = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:443:12:   required from ‘static void Eigen::internal::triangular_product_impl<Mode, LhsIsTriangular, Lhs, false, Rhs, false>::run(Dest&, const Lhs&, const Rhs&, const typename Dest::Scalar&) [with Dest = Eigen::Matrix<double, -1, -1>; int Mode = 1; bool LhsIsTriangular = true; Lhs = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; Rhs = Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >; typename Dest::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:770:14:   [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123:20:   required from ‘stan::math::arena_matrix<MatrixType, typename std::enable_if<stan::is_eigen_dense_base<typename std::decay<_Tp>::type>::value, void>::type>& stan::math::arena_matrix<MatrixType, typename std::enable_if<stan::is_eigen_dense_base<typename std::decay<_Tp>::type>::value, void>::type>::operator=(const T&) [with T = Eigen::Product<Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0>; MatrixType = Eigen::Matrix<double, -1, -1>; typename std::enable_if<stan::is_eigen_dense_base<typename std::decay<_Tp>::type>::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:68:11:   required from ‘stan::math::arena_matrix<MatrixType, typename std::enable_if<stan::is_eigen_dense_base<typename std::decay<_Tp>::type>::value, void>::type>::arena_matrix(const T&) [with T = Eigen::Product<Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_eigen_t<T>* <anonymous> = 0; MatrixType = Eigen::Matrix<double, -1, -1>; typename std::enable_if<stan::is_eigen_dense_base<typename std::decay<_Tp>::type>::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/vari.hpp:722:9:   required from ‘stan::math::vari_value<T, typename std::enable_if<stan::math::conjunction<std::is_same<typename std::decay<_Tp>::type, typename stan::plain_type<T, void>::type>, stan::is_eigen_dense_base<T> >::value, void>::type>::vari_value(const S&, bool) [with S = Eigen::Product<Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_assignable_t<T, S>* <anonymous> = 0; T = Eigen::Matrix<double, -1, -1>; typename std::enable_if<stan::math::conjunction<std::is_same<typename std::decay<_Tp>::type, typename stan::plain_type<T, void>::type>, stan::is_eigen_dense_base<T> >::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix<double, -1, -1>; typename stan::plain_type<T>::type = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/var.hpp:366:26:   required from ‘stan::math::var_value<T, typename std::enable_if<std::integral_constant<bool, ((stan::is_eigen<T>::value || stan::is_kernel_expression_and_not_scalar<T>::value) && std::is_floating_point<typename stan::value_type<T>::type>::value)>::value, void>::type>::var_value(S&&) [with S = const Eigen::Product<Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_assignable_t<T, S>* <anonymous> = 0; T = Eigen::Matrix<double, -1, -1>; typename std::enable_if<std::integral_constant<bool, ((stan::is_eigen<T>::value || stan::is_kernel_expression_and_not_scalar<T>::value) && std::is_floating_point<typename stan::value_type<T>::type>::value)>::value, void>::type = void; typename stan::value_type<T>::type = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply_lower_tri_self_transpose.hpp:27:0:   required from ‘auto stan::math::multiply_lower_tri_self_transpose(const T&) [with T = var_value<Eigen::Matrix<double, -1, -1> >; stan::require_rev_matrix_t<T>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cov_matrix_constrain.hpp:59:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
  190 |          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
      |                                       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
  190 |          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
      |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
  208 |   typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
      |                                                                                        ^~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 8, 8, 0, 8, 8>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 8, 8, 0, 8, 8>, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 8, 8, 0, 8, 8>, 3>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Matrix<double, 8, 8, 0, 8, 8> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Matrix<double, 8, 8, 0, 8, 8> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<double, 8, 8, 0, 8, 8> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   [ skipping 14 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123:20:   required from ‘stan::math::arena_matrix<MatrixType, typename std::enable_if<stan::is_eigen_dense_base<typename std::decay<_Tp>::type>::value, void>::type>& stan::math::arena_matrix<MatrixType, typename std::enable_if<stan::is_eigen_dense_base<typename std::decay<_Tp>::type>::value, void>::type>::operator=(const T&) [with T = Eigen::Product<Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0>; MatrixType = Eigen::Matrix<double, -1, -1>; typename std::enable_if<stan::is_eigen_dense_base<typename std::decay<_Tp>::type>::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:68:11:   required from ‘stan::math::arena_matrix<MatrixType, typename std::enable_if<stan::is_eigen_dense_base<typename std::decay<_Tp>::type>::value, void>::type>::arena_matrix(const T&) [with T = Eigen::Product<Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_eigen_t<T>* <anonymous> = 0; MatrixType = Eigen::Matrix<double, -1, -1>; typename std::enable_if<stan::is_eigen_dense_base<typename std::decay<_Tp>::type>::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/vari.hpp:722:9:   required from ‘stan::math::vari_value<T, typename std::enable_if<stan::math::conjunction<std::is_same<typename std::decay<_Tp>::type, typename stan::plain_type<T, void>::type>, stan::is_eigen_dense_base<T> >::value, void>::type>::vari_value(const S&, bool) [with S = Eigen::Product<Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_assignable_t<T, S>* <anonymous> = 0; T = Eigen::Matrix<double, -1, -1>; typename std::enable_if<stan::math::conjunction<std::is_same<typename std::decay<_Tp>::type, typename stan::plain_type<T, void>::type>, stan::is_eigen_dense_base<T> >::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix<double, -1, -1>; typename stan::plain_type<T>::type = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/var.hpp:366:26:   required from ‘stan::math::var_value<T, typename std::enable_if<std::integral_constant<bool, ((stan::is_eigen<T>::value || stan::is_kernel_expression_and_not_scalar<T>::value) && std::is_floating_point<typename stan::value_type<T>::type>::value)>::value, void>::type>::var_value(S&&) [with S = const Eigen::Product<Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_assignable_t<T, S>* <anonymous> = 0; T = Eigen::Matrix<double, -1, -1>; typename std::enable_if<std::integral_constant<bool, ((stan::is_eigen<T>::value || stan::is_kernel_expression_and_not_scalar<T>::value) && std::is_floating_point<typename stan::value_type<T>::type>::value)>::value, void>::type = void; typename stan::value_type<T>::type = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply_lower_tri_self_transpose.hpp:27:0:   required from ‘auto stan::math::multiply_lower_tri_self_transpose(const T&) [with T = var_value<Eigen::Matrix<double, -1, -1> >; stan::require_rev_matrix_t<T>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cov_matrix_constrain.hpp:59:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   56 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Diagonal<Eigen::Matrix<double, 8, 8, 0, 8, 8>, 0>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Diagonal<Eigen::Matrix<double, 8, 8, 0, 8, 8>, 0>, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Diagonal<Eigen::Matrix<double, 8, 8, 0, 8, 8>, 0>, 3>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Diagonal<Eigen::Matrix<double, 8, 8, 0, 8, 8>, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Diagonal<Eigen::Matrix<double, 8, 8, 0, 8, 8>, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Diagonal.h:63:53:   required from ‘class Eigen::Diagonal<Eigen::Matrix<double, 8, 8, 0, 8, 8>, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:153:32:   [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123:20:   required from ‘stan::math::arena_matrix<MatrixType, typename std::enable_if<stan::is_eigen_dense_base<typename std::decay<_Tp>::type>::value, void>::type>& stan::math::arena_matrix<MatrixType, typename std::enable_if<stan::is_eigen_dense_base<typename std::decay<_Tp>::type>::value, void>::type>::operator=(const T&) [with T = Eigen::Product<Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0>; MatrixType = Eigen::Matrix<double, -1, -1>; typename std::enable_if<stan::is_eigen_dense_base<typename std::decay<_Tp>::type>::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:68:11:   required from ‘stan::math::arena_matrix<MatrixType, typename std::enable_if<stan::is_eigen_dense_base<typename std::decay<_Tp>::type>::value, void>::type>::arena_matrix(const T&) [with T = Eigen::Product<Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_eigen_t<T>* <anonymous> = 0; MatrixType = Eigen::Matrix<double, -1, -1>; typename std::enable_if<stan::is_eigen_dense_base<typename std::decay<_Tp>::type>::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/vari.hpp:722:9:   required from ‘stan::math::vari_value<T, typename std::enable_if<stan::math::conjunction<std::is_same<typename std::decay<_Tp>::type, typename stan::plain_type<T, void>::type>, stan::is_eigen_dense_base<T> >::value, void>::type>::vari_value(const S&, bool) [with S = Eigen::Product<Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_assignable_t<T, S>* <anonymous> = 0; T = Eigen::Matrix<double, -1, -1>; typename std::enable_if<stan::math::conjunction<std::is_same<typename std::decay<_Tp>::type, typename stan::plain_type<T, void>::type>, stan::is_eigen_dense_base<T> >::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix<double, -1, -1>; typename stan::plain_type<T>::type = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/var.hpp:366:26:   required from ‘stan::math::var_value<T, typename std::enable_if<std::integral_constant<bool, ((stan::is_eigen<T>::value || stan::is_kernel_expression_and_not_scalar<T>::value) && std::is_floating_point<typename stan::value_type<T>::type>::value)>::value, void>::type>::var_value(S&&) [with S = const Eigen::Product<Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_assignable_t<T, S>* <anonymous> = 0; T = Eigen::Matrix<double, -1, -1>; typename std::enable_if<std::integral_constant<bool, ((stan::is_eigen<T>::value || stan::is_kernel_expression_and_not_scalar<T>::value) && std::is_floating_point<typename stan::value_type<T>::type>::value)>::value, void>::type = void; typename stan::value_type<T>::type = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply_lower_tri_self_transpose.hpp:27:0:   required from ‘auto stan::math::multiply_lower_tri_self_transpose(const T&) [with T = var_value<Eigen::Matrix<double, -1, -1> >; stan::require_rev_matrix_t<T>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cov_matrix_constrain.hpp:59:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet<double, 8>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:179:81:   required from ‘class Eigen::DenseBase<Eigen::Diagonal<Eigen::Matrix<double, 8, 8, 0, 8, 8>, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Diagonal<Eigen::Matrix<double, 8, 8, 0, 8, 8>, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Diagonal.h:63:53:   required from ‘class Eigen::Diagonal<Eigen::Matrix<double, 8, 8, 0, 8, 8>, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:153:32:   required from ‘static void Eigen::internal::product_triangular_matrix_matrix<Scalar, Index, Mode, true, LhsStorageOrder, ConjugateLhs, RhsStorageOrder, ConjugateRhs, 0, ResInnerStride, Version>::run(Index, Index, Index, const Scalar*, Index, const Scalar*, Index, Scalar*, Index, Index, const Scalar&, Eigen::internal::level3_blocking<Scalar, Scalar>&) [with Scalar = double; Index = long int; int Mode = 1; int LhsStorageOrder = 0; bool ConjugateLhs = false; int RhsStorageOrder = 1; bool ConjugateRhs = false; int ResInnerStride = 1; int Version = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:443:12:   required from ‘static void Eigen::internal::triangular_product_impl<Mode, LhsIsTriangular, Lhs, false, Rhs, false>::run(Dest&, const Lhs&, const Rhs&, const typename Dest::Scalar&) [with Dest = Eigen::Matrix<double, -1, -1>; int Mode = 1; bool LhsIsTriangular = true; Lhs = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; Rhs = Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >; typename Dest::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:770:14:   [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123:20:   required from ‘stan::math::arena_matrix<MatrixType, typename std::enable_if<stan::is_eigen_dense_base<typename std::decay<_Tp>::type>::value, void>::type>& stan::math::arena_matrix<MatrixType, typename std::enable_if<stan::is_eigen_dense_base<typename std::decay<_Tp>::type>::value, void>::type>::operator=(const T&) [with T = Eigen::Product<Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0>; MatrixType = Eigen::Matrix<double, -1, -1>; typename std::enable_if<stan::is_eigen_dense_base<typename std::decay<_Tp>::type>::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:68:11:   required from ‘stan::math::arena_matrix<MatrixType, typename std::enable_if<stan::is_eigen_dense_base<typename std::decay<_Tp>::type>::value, void>::type>::arena_matrix(const T&) [with T = Eigen::Product<Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_eigen_t<T>* <anonymous> = 0; MatrixType = Eigen::Matrix<double, -1, -1>; typename std::enable_if<stan::is_eigen_dense_base<typename std::decay<_Tp>::type>::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/vari.hpp:722:9:   required from ‘stan::math::vari_value<T, typename std::enable_if<stan::math::conjunction<std::is_same<typename std::decay<_Tp>::type, typename stan::plain_type<T, void>::type>, stan::is_eigen_dense_base<T> >::value, void>::type>::vari_value(const S&, bool) [with S = Eigen::Product<Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_assignable_t<T, S>* <anonymous> = 0; T = Eigen::Matrix<double, -1, -1>; typename std::enable_if<stan::math::conjunction<std::is_same<typename std::decay<_Tp>::type, typename stan::plain_type<T, void>::type>, stan::is_eigen_dense_base<T> >::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix<double, -1, -1>; typename stan::plain_type<T>::type = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/var.hpp:366:26:   required from ‘stan::math::var_value<T, typename std::enable_if<std::integral_constant<bool, ((stan::is_eigen<T>::value || stan::is_kernel_expression_and_not_scalar<T>::value) && std::is_floating_point<typename stan::value_type<T>::type>::value)>::value, void>::type>::var_value(S&&) [with S = const Eigen::Product<Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_assignable_t<T, S>* <anonymous> = 0; T = Eigen::Matrix<double, -1, -1>; typename std::enable_if<std::integral_constant<bool, ((stan::is_eigen<T>::value || stan::is_kernel_expression_and_not_scalar<T>::value) && std::is_floating_point<typename stan::value_type<T>::type>::value)>::value, void>::type = void; typename stan::value_type<T>::type = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply_lower_tri_self_transpose.hpp:27:0:   required from ‘auto stan::math::multiply_lower_tri_self_transpose(const T&) [with T = var_value<Eigen::Matrix<double, -1, -1> >; stan::require_rev_matrix_t<T>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cov_matrix_constrain.hpp:59:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
  190 |          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
      |                                       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
  190 |          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
      |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
  208 |   typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
      |                                                                                        ^~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator<Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:372:102:   required from ‘struct Eigen::internal::plain_object_eval<Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:370:45:   required from ‘struct Eigen::internal::generic_product_impl<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>, Eigen::DenseShape, Eigen::DenseShape, 7>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43:   required from ‘static void Eigen::internal::Assignment<DstXprType, Eigen::Product<Lhs, Rhs, Options>, Eigen::internal::assign_op<Scalar, Scalar>, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op<Scalar, Scalar>&) [with DstXprType = Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >; Lhs = Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>; Rhs = Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>; int Options = 0; Scalar = double; SrcXprType = Eigen::Product<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>, 0>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >; Src = Eigen::Product<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>, 0>; Func = assign_op<double, double>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/NoAlias.h:43:31:   required from ‘ExpressionType& Eigen::NoAlias<ExpressionType, StorageBase>::operator=(const StorageBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>, 0>; ExpressionType = Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >; StorageBase = Eigen::MatrixBase]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Householder/Householder.h:167:19:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::HouseholderSequence<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
 1071 |     PacketAlignment = unpacket_traits<PacketScalar>::alignment,
      |                                                      ^~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, -1, 1, false>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, -1, 1, false>, 2>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, -1, 1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, -1, 1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, -1, 1, false>, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7:   required from ‘class Eigen::internal::BlockImpl_dense<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, -1, 1, false, true>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   [ skipping 14 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:37:0:   required from ‘Scalar stan::optimization::BFGSUpdate_HInv<Scalar, DimAtCompile>::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0:   required from ‘int stan::optimization::BFGSMinimizer<FunctorType, QNUpdateType, Scalar, DimAtCompile>::step() [with FunctorType = stan::optimization::ModelAdaptor<model_shrinkage_namespace::model_shrinkage, false>; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0:   required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage; bool jacobian = false]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:15:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   56 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, 1, -1, false> >, const Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, -1, 1, false> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, 1, -1, false> >, const Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, -1, 1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, 1, -1, false> >, const Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, -1, 1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, 1, -1, false> >, const Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, -1, 1, false>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, 1, -1, false> >, const Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, -1, 1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:606:52:   required from ‘const Eigen::internal::product_evaluator<Eigen::Product<Lhs, Rhs, 1>, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::CoeffReturnType Eigen::internal::product_evaluator<Eigen::Product<Lhs, Rhs, 1>, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::coeff(Eigen::Index, Eigen::Index) const [with Lhs = Eigen::Matrix<double, -1, -1>; Rhs = Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >; int ProductTag = 8; typename Eigen::internal::traits<typename Eigen::Product<Lhs, Rhs, 1>::Lhs>::Scalar = double; typename Eigen::Product<Lhs, Rhs, 1>::Lhs = Eigen::Matrix<double, -1, -1>; typename Eigen::internal::traits<typename Eigen::Product<Lhs, Rhs, 1>::Rhs>::Scalar = double; typename Eigen::Product<Lhs, Rhs, 1>::Rhs = Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >; CoeffReturnType = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:769:69:   [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:37:0:   required from ‘Scalar stan::optimization::BFGSUpdate_HInv<Scalar, DimAtCompile>::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0:   required from ‘int stan::optimization::BFGSMinimizer<FunctorType, QNUpdateType, Scalar, DimAtCompile>::step() [with FunctorType = stan::optimization::ModelAdaptor<model_shrinkage_namespace::model_shrinkage, false>; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0:   required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage; bool jacobian = false]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:15:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Product<Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, -1>, 0>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 1>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Product<Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, -1>, 0>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Product<Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, -1>, 0>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7:   required from ‘class Eigen::internal::dense_product_base<Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, -1>, 0>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 1, 8>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7:   required from ‘class Eigen::ProductImpl<Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, -1>, 0>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 1, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product<Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, -1>, 0>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:462:68:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:40:0:   required from ‘Scalar stan::optimization::BFGSUpdate_HInv<Scalar, DimAtCompile>::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0:   required from ‘int stan::optimization::BFGSMinimizer<FunctorType, QNUpdateType, Scalar, DimAtCompile>::step() [with FunctorType = stan::optimization::ModelAdaptor<model_shrinkage_namespace::model_shrinkage, false>; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0:   required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage; bool jacobian = false]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:15:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, -1, 1, -1, -1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, -1, 1, -1, -1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7:   required from ‘class Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, -1, 1, -1, -1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:347:30:   required from ‘Derived& Eigen::DenseBase<Derived>::setConstant(const Scalar&) [with Derived = Eigen::Matrix<double, -1, -1, 1, -1, -1>; Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:548:10:   required from ‘Derived& Eigen::DenseBase<Derived>::setZero() [with Derived = Eigen::Matrix<double, -1, -1, 1, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:444:18:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:40:0:   required from ‘Scalar stan::optimization::BFGSUpdate_HInv<Scalar, DimAtCompile>::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0:   required from ‘int stan::optimization::BFGSMinimizer<FunctorType, QNUpdateType, Scalar, DimAtCompile>::step() [with FunctorType = stan::optimization::ModelAdaptor<model_shrinkage_namespace::model_shrinkage, false>; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0:   required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage; bool jacobian = false]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:15:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Block<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, -1>, 0>, 1, -1, false>, 1, -1, true>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Block<const Eigen::Block<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, -1>, 0>, 1, -1, false>, 1, -1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Block<const Eigen::Block<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, -1>, 0>, 1, -1, false>, 1, -1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:172:103:   required from ‘class Eigen::internal::BlockImpl_dense<const Eigen::Block<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, -1>, 0>, 1, -1, false>, 1, -1, true, false>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   required from ‘class Eigen::BlockImpl<const Eigen::Block<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, -1>, 0>, 1, -1, false>, 1, -1, true, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81:   required from ‘class Eigen::Block<const Eigen::Block<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, -1>, 0>, 1, -1, false>, 1, -1, true>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:380:43:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:40:0:   required from ‘Scalar stan::optimization::BFGSUpdate_HInv<Scalar, DimAtCompile>::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0:   required from ‘int stan::optimization::BFGSMinimizer<FunctorType, QNUpdateType, Scalar, DimAtCompile>::step() [with FunctorType = stan::optimization::ModelAdaptor<model_shrinkage_namespace::model_shrinkage, false>; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0:   required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage; bool jacobian = false]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:15:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 4, 1, 4, 4>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 4, 1, 4, 4>, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 4, 1, 4, 4>, 3>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Matrix<double, 4, 4, 1, 4, 4> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Matrix<double, 4, 4, 1, 4, 4> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<double, 4, 4, 1, 4, 4> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19:   required from ‘Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Transpose<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0> >; Derived = Eigen::Matrix<double, -1, -1, 1, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::Transpose<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0> >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 1; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/to_ref.hpp:18:27:   required from ‘stan::ref_type_t<T&&> stan::math::to_ref(T&&) [with T = const Eigen::Transpose<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0> >&; stan::ref_type_t<T&&> = Eigen::Matrix<double, -1, -1, 1, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:27:29:   required from ‘Eigen::Matrix<typename stan::value_type<T>::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0> >; stan::require_eigen_vt<std::is_arithmetic, T>* <anonymous> = 0; typename stan::value_type<T>::type = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20:   required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0>; stan::require_eigen_t<T_desired>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Diagonal<Eigen::Matrix<double, 4, 4, 1, 4, 4>, 0>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Diagonal<Eigen::Matrix<double, 4, 4, 1, 4, 4>, 0>, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Diagonal<Eigen::Matrix<double, 4, 4, 1, 4, 4>, 0>, 3>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Diagonal<Eigen::Matrix<double, 4, 4, 1, 4, 4>, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Diagonal<Eigen::Matrix<double, 4, 4, 1, 4, 4>, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Diagonal.h:63:53:   required from ‘class Eigen::Diagonal<Eigen::Matrix<double, 4, 4, 1, 4, 4>, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:303:32:   [ skipping 14 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19:   required from ‘Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Transpose<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0> >; Derived = Eigen::Matrix<double, -1, -1, 1, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::Transpose<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0> >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 1; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/to_ref.hpp:18:27:   required from ‘stan::ref_type_t<T&&> stan::math::to_ref(T&&) [with T = const Eigen::Transpose<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0> >&; stan::ref_type_t<T&&> = Eigen::Matrix<double, -1, -1, 1, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:27:29:   required from ‘Eigen::Matrix<typename stan::value_type<T>::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0> >; stan::require_eigen_vt<std::is_arithmetic, T>* <anonymous> = 0; typename stan::value_type<T>::type = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20:   required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0>; stan::require_eigen_t<T_desired>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase<Derived>&) [with Derived = Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true> >, const Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, -1, 1, true> >; Eigen::Index = long int]’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63:   required from ‘static Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::Scalar Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true> >, const Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, -1, 1, true> >; Func = Eigen::internal::scalar_sum_op<double, double>; Evaluator = Eigen::internal::redux_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true> >, const Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, -1, 1, true> > >; Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56:   required from ‘typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true> >, const Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, -1, 1, true> >; typename Eigen::internal::traits<T>::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25:   required from ‘typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::sum() const [with Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true> >, const Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, -1, 1, true> >; typename Eigen::internal::traits<T>::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:606:75:   required from ‘const Eigen::internal::product_evaluator<Eigen::Product<Lhs, Rhs, 1>, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::CoeffReturnType Eigen::internal::product_evaluator<Eigen::Product<Lhs, Rhs, 1>, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::coeff(Eigen::Index, Eigen::Index) const [with Lhs = Eigen::Matrix<double, -1, -1, 1, -1, -1>; Rhs = Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >; int ProductTag = 8; typename Eigen::internal::traits<typename Eigen::Product<Lhs, Rhs, 1>::Lhs>::Scalar = double; typename Eigen::Product<Lhs, Rhs, 1>::Lhs = Eigen::Matrix<double, -1, -1, 1, -1, -1>; typename Eigen::internal::traits<typename Eigen::Product<Lhs, Rhs, 1>::Rhs>::Scalar = double; typename Eigen::Product<Lhs, Rhs, 1>::Rhs = Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >; CoeffReturnType = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:654:63:   required from ‘void Eigen::internal::generic_dense_assignment_kernel<DstEvaluatorTypeT, SrcEvaluatorTypeT, Functor, Version>::assignCoeff(Eigen::Index, Eigen::Index) [with DstEvaluatorTypeT = Eigen::internal::evaluator<Eigen::Matrix<double, -1, -1> >; SrcEvaluatorTypeT = Eigen::internal::evaluator<Eigen::Product<Eigen::Matrix<double, -1, -1, 1, -1, -1>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 1> >; Functor = Eigen::internal::assign_op<double, double>; int Version = 1; Eigen::Index = long int]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:668:16:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41:   required from ‘Derived& Eigen::PlainObjectBase<Derived>::_set_noalias(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Matrix<double, -1, -1, 1, -1, -1>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 0>; Derived = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19:   required from ‘Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Matrix<double, -1, -1, 1, -1, -1>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 0>; Derived = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Matrix<double, -1, -1, 1, -1, -1>, Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:29:18:   required from ‘Eigen::Matrix<typename stan::value_type<T>::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0> >; stan::require_eigen_vt<std::is_arithmetic, T>* <anonymous> = 0; typename stan::value_type<T>::type = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20:   required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0>; stan::require_eigen_t<T_desired>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
  654 |   return internal::first_aligned<int(unpacket_traits<DefaultPacketType>::alignment),Derived>(m);
      |                                                                          ^~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator<Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, -1, false> >’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:774:20:   required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; SrcXprType = Eigen::Block<const Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, -1, false>; Functor = sub_assign_op<double, double>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31:   required from ‘static void Eigen::internal::Assignment<DstXprType, SrcXprType, Functor, Eigen::internal::Dense2Dense, Weak>::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; SrcXprType = Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, -1, false>; Functor = Eigen::internal::sub_assign_op<double, double>; Weak = void]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Src = Eigen::Block<const Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, -1, false>; Func = sub_assign_op<double, double>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing<Src>::value), void*>::type) [with Dst = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Src = Eigen::Block<const Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, -1, false>; Func = sub_assign_op<double, double>; typename enable_if<(! evaluator_assume_aliasing<Src>::value), void*>::type = void*; typename evaluator_traits<SrcXprType>::Shape = Eigen::DenseShape]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:164:18:   required from ‘Derived& Eigen::MatrixBase<Derived>::operator-=(const Eigen::MatrixBase<OtherDerived>&) [with OtherDerived = Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, -1, false>; Derived = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:457:31:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/TriangularMatrix.h:856:103:   required from ‘static void Eigen::internal::Assignment<DstXprType, SrcXprType, Functor, Eigen::internal::Triangular2Dense>::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; SrcXprType = Eigen::TriangularView<const Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Functor = Eigen::internal::add_assign_op<double, double>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; Src = Eigen::TriangularView<const Eigen::Product<Eigen::CwiseBinaryOp<scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Func = add_assign_op<double, double>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing<Src>::value), void*>::type) [with Dst = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; Src = Eigen::TriangularView<const Eigen::Product<Eigen::CwiseBinaryOp<scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Func = add_assign_op<double, double>; typename enable_if<(! evaluator_assume_aliasing<Src>::value), void*>::type = void*; typename evaluator_traits<SrcXprType>::Shape = Eigen::TriangularShape]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/EigenBase.h:145:18:   required from ‘Derived& Eigen::DenseBase<Derived>::operator+=(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::TriangularView<const Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Derived = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply_lower_tri_self_transpose.hpp:31:0:   required from ‘auto stan::math::multiply_lower_tri_self_transpose(const T&) [with T = var_value<Eigen::Matrix<double, -1, -1> >; stan::require_rev_matrix_t<T>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cov_matrix_constrain.hpp:59:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
 1071 |     PacketAlignment = unpacket_traits<PacketScalar>::alignment,
      |                                                      ^~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator<Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, -1, false> >’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8:   required from ‘struct Eigen::internal::evaluator<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, -1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78:   required from ‘struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, -1, false> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8:   required from ‘struct Eigen::internal::evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, -1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:774:20:   required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true>; SrcXprType = Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Block<const Eigen::CwiseBinaryOp<scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, -1, false> >; Functor = sub_assign_op<double, double>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31:   required from ‘static void Eigen::internal::Assignment<DstXprType, SrcXprType, Functor, Eigen::internal::Dense2Dense, Weak>::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true>; SrcXprType = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, -1, false> >; Functor = Eigen::internal::sub_assign_op<double, double>; Weak = void]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/TriangularMatrix.h:856:103:   required from ‘static void Eigen::internal::Assignment<DstXprType, SrcXprType, Functor, Eigen::internal::Triangular2Dense>::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; SrcXprType = Eigen::TriangularView<const Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Functor = Eigen::internal::add_assign_op<double, double>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; Src = Eigen::TriangularView<const Eigen::Product<Eigen::CwiseBinaryOp<scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Func = add_assign_op<double, double>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing<Src>::value), void*>::type) [with Dst = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; Src = Eigen::TriangularView<const Eigen::Product<Eigen::CwiseBinaryOp<scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Func = add_assign_op<double, double>; typename enable_if<(! evaluator_assume_aliasing<Src>::value), void*>::type = void*; typename evaluator_traits<SrcXprType>::Shape = Eigen::TriangularShape]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/EigenBase.h:145:18:   required from ‘Derived& Eigen::DenseBase<Derived>::operator+=(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::TriangularView<const Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Derived = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply_lower_tri_self_transpose.hpp:31:0:   required from ‘auto stan::math::multiply_lower_tri_self_transpose(const T&) [with T = var_value<Eigen::Matrix<double, -1, -1> >; stan::require_rev_matrix_t<T>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cov_matrix_constrain.hpp:59:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:780:20:   required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true>; SrcXprType = Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Block<const Eigen::CwiseBinaryOp<scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, -1, false> >; Functor = sub_assign_op<double, double>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31:   required from ‘static void Eigen::internal::Assignment<DstXprType, SrcXprType, Functor, Eigen::internal::Dense2Dense, Weak>::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true>; SrcXprType = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, -1, false> >; Functor = Eigen::internal::sub_assign_op<double, double>; Weak = void]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true>; Src = Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Block<const Eigen::CwiseBinaryOp<scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, -1, false> >; Func = sub_assign_op<double, double>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing<Src>::value), void*>::type) [with Dst = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true>; Src = Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Block<const Eigen::CwiseBinaryOp<scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, -1, false> >; Func = sub_assign_op<double, double>; typename enable_if<(! evaluator_assume_aliasing<Src>::value), void*>::type = void*; typename evaluator_traits<SrcXprType>::Shape = Eigen::DenseShape]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:164:18:   required from ‘Derived& Eigen::MatrixBase<Derived>::operator-=(const Eigen::MatrixBase<OtherDerived>&) [with OtherDerived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, -1, -1, false> >; Derived = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:462:32:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/TriangularMatrix.h:856:103:   required from ‘static void Eigen::internal::Assignment<DstXprType, SrcXprType, Functor, Eigen::internal::Triangular2Dense>::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; SrcXprType = Eigen::TriangularView<const Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Functor = Eigen::internal::add_assign_op<double, double>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; Src = Eigen::TriangularView<const Eigen::Product<Eigen::CwiseBinaryOp<scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Func = add_assign_op<double, double>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing<Src>::value), void*>::type) [with Dst = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; Src = Eigen::TriangularView<const Eigen::Product<Eigen::CwiseBinaryOp<scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Func = add_assign_op<double, double>; typename enable_if<(! evaluator_assume_aliasing<Src>::value), void*>::type = void*; typename evaluator_traits<SrcXprType>::Shape = Eigen::TriangularShape]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/EigenBase.h:145:18:   required from ‘Derived& Eigen::DenseBase<Derived>::operator+=(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::TriangularView<const Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, 0>, 1>; Derived = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply_lower_tri_self_transpose.hpp:31:0:   required from ‘auto stan::math::multiply_lower_tri_self_transpose(const T&) [with T = var_value<Eigen::Matrix<double, -1, -1> >; stan::require_rev_matrix_t<T>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cov_matrix_constrain.hpp:59:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator<Eigen::Block<const Eigen::Matrix<double, -1, 1>, -1, 1, false> >’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:142:7:   required from ‘Eigen::DenseCoeffsBase<Derived, 0>::CoeffReturnType Eigen::DenseCoeffsBase<Derived, 0>::coeff(Eigen::Index) const [with Derived = Eigen::Block<const Eigen::Matrix<double, -1, 1>, -1, 1, false>; CoeffReturnType = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:182:19:   required from ‘Eigen::DenseCoeffsBase<Derived, 0>::CoeffReturnType Eigen::DenseCoeffsBase<Derived, 0>::operator()(Eigen::Index) const [with Derived = Eigen::Block<const Eigen::Matrix<double, -1, 1>, -1, 1, false>; CoeffReturnType = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:63:53:   required from ‘void Eigen::internal::make_block_householder_triangular_factor(TriangularFactorType&, const VectorsType&, const CoeffsType&) [with TriangularFactorType = Eigen::Matrix<double, -1, -1, 1, -1, -1>; VectorsType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; CoeffsType = Eigen::VectorBlock<const Eigen::Matrix<double, -1, 1>, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:92:55:   required from ‘void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; VectorsType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; CoeffsType = Eigen::VectorBlock<const Eigen::Matrix<double, -1, 1>, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:399:46:   required from ‘void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::applyThisOnTheLeft(Dest&, Workspace&, bool) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, -1, 1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:320:29:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::HouseholderSequence<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true> >, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true> >, 3>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37:   required from ‘class Eigen::TransposeImpl<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   [ skipping 14 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:40:0:   required from ‘Scalar stan::optimization::BFGSUpdate_HInv<Scalar, DimAtCompile>::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0:   required from ‘int stan::optimization::BFGSMinimizer<FunctorType, QNUpdateType, Scalar, DimAtCompile>::step() [with FunctorType = stan::optimization::ModelAdaptor<model_shrinkage_namespace::model_shrinkage, false>; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0:   required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage; bool jacobian = false]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:15:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   56 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Matrix<double, 1, -1> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Matrix<double, 1, -1> >, 2>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Transpose<const Eigen::Matrix<double, 1, -1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Transpose<const Eigen::Matrix<double, 1, -1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37:   required from ‘class Eigen::TransposeImpl<const Eigen::Matrix<double, 1, -1>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   required from ‘class Eigen::Transpose<const Eigen::Matrix<double, 1, -1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:207:43:   [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:40:0:   required from ‘Scalar stan::optimization::BFGSUpdate_HInv<Scalar, DimAtCompile>::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0:   required from ‘int stan::optimization::BFGSMinimizer<FunctorType, QNUpdateType, Scalar, DimAtCompile>::step() [with FunctorType = stan::optimization::ModelAdaptor<model_shrinkage_namespace::model_shrinkage, false>; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0:   required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage; bool jacobian = false]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:15:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, false> >’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:780:20:   required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, false>; SrcXprType = Eigen::CwiseNullaryOp<scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> >; Functor = div_assign_op<double, double>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31:   required from ‘static void Eigen::internal::Assignment<DstXprType, SrcXprType, Functor, Eigen::internal::Dense2Dense, Weak>::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, false>; SrcXprType = Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> >; Functor = Eigen::internal::div_assign_op<double, double>; Weak = void]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, false>; Src = Eigen::CwiseNullaryOp<scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> >; Func = div_assign_op<double, double>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing<Src>::value), void*>::type) [with Dst = Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, false>; Src = Eigen::CwiseNullaryOp<scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> >; Func = div_assign_op<double, double>; typename enable_if<(! evaluator_assume_aliasing<Src>::value), void*>::type = void*; typename evaluator_traits<SrcXprType>::Shape = Eigen::DenseShape]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/SelfCwiseBinaryOp.h:41:28:   required from ‘Derived& Eigen::DenseBase<Derived>::operator/=(const Scalar&) [with Derived = Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, false>; Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:333:21:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/run_adaptive_sampler.hpp:57:0:   required from ‘void stan::services::util::run_adaptive_sampler(Sampler&, Model&, std::vector<double>&, int, int, int, int, bool, RNG&, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, size_t, size_t) [with Sampler = stan::mcmc::adapt_dense_e_nuts<model_shrinkage_namespace::model_shrinkage, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> > >; Model = model_shrinkage_namespace::model_shrinkage; RNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; size_t = long unsigned int]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:97:0:   required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:150:0:   required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:638:0:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:15:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
 1071 |     PacketAlignment = unpacket_traits<PacketScalar>::alignment,
      |                                                      ^~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Map<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::OuterStride<> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Map<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::OuterStride<> >, 2>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Map<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::OuterStride<> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Map<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::OuterStride<> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Map<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::OuterStride<> >, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Map.h:94:79:   required from ‘class Eigen::Map<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::OuterStride<> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularSolverVector.h:39:18:   [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/run_adaptive_sampler.hpp:57:0:   required from ‘void stan::services::util::run_adaptive_sampler(Sampler&, Model&, std::vector<double>&, int, int, int, int, bool, RNG&, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, size_t, size_t) [with Sampler = stan::mcmc::adapt_dense_e_nuts<model_shrinkage_namespace::model_shrinkage, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> > >; Model = model_shrinkage_namespace::model_shrinkage; RNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; size_t = long unsigned int]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:97:0:   required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:150:0:   required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:638:0:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:15:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   56 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::OuterStride<> >, 1, -1, true>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::OuterStride<> >, 1, -1, true>, 2>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::OuterStride<> >, 1, -1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::OuterStride<> >, 1, -1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::OuterStride<> >, 1, -1, true>, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7:   required from ‘class Eigen::internal::BlockImpl_dense<const Eigen::Map<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::OuterStride<> >, 1, -1, true, true>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/run_adaptive_sampler.hpp:57:0:   required from ‘void stan::services::util::run_adaptive_sampler(Sampler&, Model&, std::vector<double>&, int, int, int, int, bool, RNG&, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, size_t, size_t) [with Sampler = stan::mcmc::adapt_dense_e_nuts<model_shrinkage_namespace::model_shrinkage, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> > >; Model = model_shrinkage_namespace::model_shrinkage; RNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; size_t = long unsigned int]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:97:0:   required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:150:0:   required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:638:0:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:15:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false>, 2>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Block<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Block<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Block<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false>, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7:   required from ‘class Eigen::internal::BlockImpl_dense<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false, true>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   [ skipping 16 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/run_adaptive_sampler.hpp:57:0:   required from ‘void stan::services::util::run_adaptive_sampler(Sampler&, Model&, std::vector<double>&, int, int, int, int, bool, RNG&, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, size_t, size_t) [with Sampler = stan::mcmc::adapt_dense_e_nuts<model_shrinkage_namespace::model_shrinkage, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> > >; Model = model_shrinkage_namespace::model_shrinkage; RNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; size_t = long unsigned int]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:97:0:   required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:150:0:   required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:638:0:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:15:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >, 2>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37:   required from ‘class Eigen::TransposeImpl<const Eigen::Block<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   required from ‘class Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularSolverVector.h:78:57:   [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/run_adaptive_sampler.hpp:57:0:   required from ‘void stan::services::util::run_adaptive_sampler(Sampler&, Model&, std::vector<double>&, int, int, int, int, bool, RNG&, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, size_t, size_t) [with Sampler = stan::mcmc::adapt_dense_e_nuts<model_shrinkage_namespace::model_shrinkage, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> > >; Model = model_shrinkage_namespace::model_shrinkage; RNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; size_t = long unsigned int]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:97:0:   required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:150:0:   required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:638:0:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:15:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >, const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >, const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >, const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >, const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >, const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularSolverVector.h:78:72:   required from ‘static void Eigen::internal::triangular_solve_vector<LhsScalar, RhsScalar, Index, 1, Mode, Conjugate, 1>::run(Index, const LhsScalar*, Index, RhsScalar*) [with LhsScalar = double; RhsScalar = double; Index = long int; int Mode = 2; bool Conjugate = false]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/SolveTriangular.h:73:12:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/run_adaptive_sampler.hpp:57:0:   required from ‘void stan::services::util::run_adaptive_sampler(Sampler&, Model&, std::vector<double>&, int, int, int, int, bool, RNG&, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, size_t, size_t) [with Sampler = stan::mcmc::adapt_dense_e_nuts<model_shrinkage_namespace::model_shrinkage, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> > >; Model = model_shrinkage_namespace::model_shrinkage; RNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; size_t = long unsigned int]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:97:0:   required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:150:0:   required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:638:0:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:15:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 8, 8, 0, 8, 8> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 8, 8, 0, 8, 8> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 8, 8, 0, 8, 8> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7:   required from ‘class Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 8, 8, 0, 8, 8> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:347:30:   required from ‘Derived& Eigen::DenseBase<Derived>::setConstant(const Scalar&) [with Derived = Eigen::Matrix<double, 8, 8, 0, 8, 8>; Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:548:10:   required from ‘Derived& Eigen::DenseBase<Derived>::setZero() [with Derived = Eigen::Matrix<double, 8, 8, 0, 8, 8>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:151:29:   [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123:20:   required from ‘stan::math::arena_matrix<MatrixType, typename std::enable_if<stan::is_eigen_dense_base<typename std::decay<_Tp>::type>::value, void>::type>& stan::math::arena_matrix<MatrixType, typename std::enable_if<stan::is_eigen_dense_base<typename std::decay<_Tp>::type>::value, void>::type>::operator=(const T&) [with T = Eigen::Product<Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0>; MatrixType = Eigen::Matrix<double, -1, -1>; typename std::enable_if<stan::is_eigen_dense_base<typename std::decay<_Tp>::type>::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:68:11:   required from ‘stan::math::arena_matrix<MatrixType, typename std::enable_if<stan::is_eigen_dense_base<typename std::decay<_Tp>::type>::value, void>::type>::arena_matrix(const T&) [with T = Eigen::Product<Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_eigen_t<T>* <anonymous> = 0; MatrixType = Eigen::Matrix<double, -1, -1>; typename std::enable_if<stan::is_eigen_dense_base<typename std::decay<_Tp>::type>::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/vari.hpp:722:9:   required from ‘stan::math::vari_value<T, typename std::enable_if<stan::math::conjunction<std::is_same<typename std::decay<_Tp>::type, typename stan::plain_type<T, void>::type>, stan::is_eigen_dense_base<T> >::value, void>::type>::vari_value(const S&, bool) [with S = Eigen::Product<Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_assignable_t<T, S>* <anonymous> = 0; T = Eigen::Matrix<double, -1, -1>; typename std::enable_if<stan::math::conjunction<std::is_same<typename std::decay<_Tp>::type, typename stan::plain_type<T, void>::type>, stan::is_eigen_dense_base<T> >::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix<double, -1, -1>; typename stan::plain_type<T>::type = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/var.hpp:366:26:   required from ‘stan::math::var_value<T, typename std::enable_if<std::integral_constant<bool, ((stan::is_eigen<T>::value || stan::is_kernel_expression_and_not_scalar<T>::value) && std::is_floating_point<typename stan::value_type<T>::type>::value)>::value, void>::type>::var_value(S&&) [with S = const Eigen::Product<Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_assignable_t<T, S>* <anonymous> = 0; T = Eigen::Matrix<double, -1, -1>; typename std::enable_if<std::integral_constant<bool, ((stan::is_eigen<T>::value || stan::is_kernel_expression_and_not_scalar<T>::value) && std::is_floating_point<typename stan::value_type<T>::type>::value)>::value, void>::type = void; typename stan::value_type<T>::type = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply_lower_tri_self_transpose.hpp:27:0:   required from ‘auto stan::math::multiply_lower_tri_self_transpose(const T&) [with T = var_value<Eigen::Matrix<double, -1, -1> >; stan::require_rev_matrix_t<T>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cov_matrix_constrain.hpp:59:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 8, 1, 0, 8, 1> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 8, 1, 0, 8, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 8, 1, 0, 8, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7:   required from ‘class Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 8, 1, 0, 8, 1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:347:30:   required from ‘Derived& Eigen::DenseBase<Derived>::setConstant(const Scalar&) [with Derived = Eigen::Diagonal<Eigen::Matrix<double, 8, 8, 0, 8, 8>, 0>; Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:548:10:   required from ‘Derived& Eigen::DenseBase<Derived>::setZero() [with Derived = Eigen::Diagonal<Eigen::Matrix<double, 8, 8, 0, 8, 8>, 0>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:153:42:   [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123:20:   required from ‘stan::math::arena_matrix<MatrixType, typename std::enable_if<stan::is_eigen_dense_base<typename std::decay<_Tp>::type>::value, void>::type>& stan::math::arena_matrix<MatrixType, typename std::enable_if<stan::is_eigen_dense_base<typename std::decay<_Tp>::type>::value, void>::type>::operator=(const T&) [with T = Eigen::Product<Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0>; MatrixType = Eigen::Matrix<double, -1, -1>; typename std::enable_if<stan::is_eigen_dense_base<typename std::decay<_Tp>::type>::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:68:11:   required from ‘stan::math::arena_matrix<MatrixType, typename std::enable_if<stan::is_eigen_dense_base<typename std::decay<_Tp>::type>::value, void>::type>::arena_matrix(const T&) [with T = Eigen::Product<Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_eigen_t<T>* <anonymous> = 0; MatrixType = Eigen::Matrix<double, -1, -1>; typename std::enable_if<stan::is_eigen_dense_base<typename std::decay<_Tp>::type>::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/vari.hpp:722:9:   required from ‘stan::math::vari_value<T, typename std::enable_if<stan::math::conjunction<std::is_same<typename std::decay<_Tp>::type, typename stan::plain_type<T, void>::type>, stan::is_eigen_dense_base<T> >::value, void>::type>::vari_value(const S&, bool) [with S = Eigen::Product<Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_assignable_t<T, S>* <anonymous> = 0; T = Eigen::Matrix<double, -1, -1>; typename std::enable_if<stan::math::conjunction<std::is_same<typename std::decay<_Tp>::type, typename stan::plain_type<T, void>::type>, stan::is_eigen_dense_base<T> >::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix<double, -1, -1>; typename stan::plain_type<T>::type = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/var.hpp:366:26:   required from ‘stan::math::var_value<T, typename std::enable_if<std::integral_constant<bool, ((stan::is_eigen<T>::value || stan::is_kernel_expression_and_not_scalar<T>::value) && std::is_floating_point<typename stan::value_type<T>::type>::value)>::value, void>::type>::var_value(S&&) [with S = const Eigen::Product<Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_assignable_t<T, S>* <anonymous> = 0; T = Eigen::Matrix<double, -1, -1>; typename std::enable_if<std::integral_constant<bool, ((stan::is_eigen<T>::value || stan::is_kernel_expression_and_not_scalar<T>::value) && std::is_floating_point<typename stan::value_type<T>::type>::value)>::value, void>::type = void; typename stan::value_type<T>::type = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply_lower_tri_self_transpose.hpp:27:0:   required from ‘auto stan::math::multiply_lower_tri_self_transpose(const T&) [with T = var_value<Eigen::Matrix<double, -1, -1> >; stan::require_rev_matrix_t<T>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cov_matrix_constrain.hpp:59:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true> >’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:774:20:   required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >; SrcXprType = Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>; Functor = add_assign_op<double, double>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31:   required from ‘static void Eigen::internal::Assignment<DstXprType, SrcXprType, Functor, Eigen::internal::Dense2Dense, Weak>::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >; SrcXprType = Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>; Functor = Eigen::internal::add_assign_op<double, double>; Weak = void]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >; Src = Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>; Func = add_assign_op<double, double>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing<Src>::value), void*>::type) [with Dst = Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >; Src = Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>; Func = add_assign_op<double, double>; typename enable_if<(! evaluator_assume_aliasing<Src>::value), void*>::type = void*; typename evaluator_traits<SrcXprType>::Shape = Eigen::DenseShape]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:177:18:   required from ‘Derived& Eigen::MatrixBase<Derived>::operator+=(const Eigen::MatrixBase<OtherDerived>&) [with OtherDerived = Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>; Derived = Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Householder/Householder.h:168:9:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::HouseholderSequence<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
 1071 |     PacketAlignment = unpacket_traits<PacketScalar>::alignment,
      |                                                      ^~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, -1, 1, true>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, -1, 1, true>, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, -1, 1, true>, 3>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Block<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, -1, 1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Block<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, -1, 1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Block<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, -1, 1, true>, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34:   [ skipping 18 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::HouseholderSequence<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   56 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator<Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, -1, 1, false> >’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8:   required from ‘struct Eigen::internal::evaluator<const Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, -1, 1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78:   required from ‘struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, 1, -1, false> >, const Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, -1, 1, false> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8:   required from ‘struct Eigen::internal::evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, 1, -1, false> >, const Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, -1, 1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7:   required from ‘class Eigen::internal::redux_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, 1, -1, false> >, const Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, -1, 1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:414:17:   required from ‘typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, 1, -1, false> >, const Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, -1, 1, false> >; typename Eigen::internal::traits<T>::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25:   [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:37:0:   required from ‘Scalar stan::optimization::BFGSUpdate_HInv<Scalar, DimAtCompile>::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0:   required from ‘int stan::optimization::BFGSMinimizer<FunctorType, QNUpdateType, Scalar, DimAtCompile>::step() [with FunctorType = stan::optimization::ModelAdaptor<model_shrinkage_namespace::model_shrinkage, false>; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0:   required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage; bool jacobian = false]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:15:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
 1071 |     PacketAlignment = unpacket_traits<PacketScalar>::alignment,
      |                                                      ^~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Block<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, -1>, 0>, 1, -1, false> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Transpose<const Eigen::Block<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, -1>, 0>, 1, -1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Transpose<const Eigen::Block<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, -1>, 0>, 1, -1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37:   required from ‘class Eigen::TransposeImpl<const Eigen::Block<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, -1>, 0>, 1, -1, false>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   required from ‘class Eigen::Transpose<const Eigen::Block<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, -1>, 0>, 1, -1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:23:   required from ‘static Eigen::internal::dot_nocheck<T, U, true>::ResScalar Eigen::internal::dot_nocheck<T, U, true>::run(const Eigen::MatrixBase<Derived>&, const Eigen::MatrixBase<U>&) [with T = Eigen::Block<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, -1>, 0>, 1, -1, false>; U = Eigen::Block<const Eigen::Block<const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, -1, 1, false>, -1, 1, true>; ResScalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58:   [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:40:0:   required from ‘Scalar stan::optimization::BFGSUpdate_HInv<Scalar, DimAtCompile>::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0:   required from ‘int stan::optimization::BFGSMinimizer<FunctorType, QNUpdateType, Scalar, DimAtCompile>::step() [with FunctorType = stan::optimization::ModelAdaptor<model_shrinkage_namespace::model_shrinkage, false>; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0:   required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage; bool jacobian = false]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:15:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   56 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, -1>, 0>, 1, -1, false> >, const Eigen::Block<const Eigen::Block<const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, -1, 1, false>, -1, 1, true> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, -1>, 0>, 1, -1, false> >, const Eigen::Block<const Eigen::Block<const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, -1, 1, false>, -1, 1, true> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, -1>, 0>, 1, -1, false> >, const Eigen::Block<const Eigen::Block<const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, -1, 1, false>, -1, 1, true> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, -1>, 0>, 1, -1, false> >, const Eigen::Block<const Eigen::Block<const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, -1, 1, false>, -1, 1, true>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, -1>, 0>, 1, -1, false> >, const Eigen::Block<const Eigen::Block<const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, -1, 1, false>, -1, 1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:56:   required from ‘static Eigen::internal::dot_nocheck<T, U, true>::ResScalar Eigen::internal::dot_nocheck<T, U, true>::run(const Eigen::MatrixBase<Derived>&, const Eigen::MatrixBase<U>&) [with T = Eigen::Block<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, -1>, 0>, 1, -1, false>; U = Eigen::Block<const Eigen::Block<const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, -1, 1, false>, -1, 1, true>; ResScalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58:   [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:40:0:   required from ‘Scalar stan::optimization::BFGSUpdate_HInv<Scalar, DimAtCompile>::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0:   required from ‘int stan::optimization::BFGSMinimizer<FunctorType, QNUpdateType, Scalar, DimAtCompile>::step() [with FunctorType = stan::optimization::ModelAdaptor<model_shrinkage_namespace::model_shrinkage, false>; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0:   required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage; bool jacobian = false]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:15:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, -1>, 0>, 1, -1, false>, 1, -1, true> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, -1>, 0>, 1, -1, false>, 1, -1, true> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, -1>, 0>, 1, -1, false>, 1, -1, true> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37:   required from ‘class Eigen::TransposeImpl<const Eigen::Block<const Eigen::Block<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, -1>, 0>, 1, -1, false>, 1, -1, true>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   required from ‘class Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, -1>, 0>, 1, -1, false>, 1, -1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:23:   required from ‘static Eigen::internal::dot_nocheck<T, U, true>::ResScalar Eigen::internal::dot_nocheck<T, U, true>::run(const Eigen::MatrixBase<Derived>&, const Eigen::MatrixBase<U>&) [with T = Eigen::Block<const Eigen::Block<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, -1>, 0>, 1, -1, false>, 1, -1, true>; U = Eigen::Block<const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, -1, 1, false>; ResScalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58:   [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:40:0:   required from ‘Scalar stan::optimization::BFGSUpdate_HInv<Scalar, DimAtCompile>::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0:   required from ‘int stan::optimization::BFGSMinimizer<FunctorType, QNUpdateType, Scalar, DimAtCompile>::step() [with FunctorType = stan::optimization::ModelAdaptor<model_shrinkage_namespace::model_shrinkage, false>; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0:   required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage; bool jacobian = false]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:15:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, -1>, 0>, 1, -1, false>, 1, -1, true> >, const Eigen::Block<const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, -1, 1, false> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, -1>, 0>, 1, -1, false>, 1, -1, true> >, const Eigen::Block<const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, -1, 1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, -1>, 0>, 1, -1, false>, 1, -1, true> >, const Eigen::Block<const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, -1, 1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, -1>, 0>, 1, -1, false>, 1, -1, true> >, const Eigen::Block<const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, -1, 1, false>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, -1>, 0>, 1, -1, false>, 1, -1, true> >, const Eigen::Block<const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, -1, 1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:56:   required from ‘static Eigen::internal::dot_nocheck<T, U, true>::ResScalar Eigen::internal::dot_nocheck<T, U, true>::run(const Eigen::MatrixBase<Derived>&, const Eigen::MatrixBase<U>&) [with T = Eigen::Block<const Eigen::Block<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, -1>, 0>, 1, -1, false>, 1, -1, true>; U = Eigen::Block<const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, -1, 1, false>; ResScalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58:   [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:40:0:   required from ‘Scalar stan::optimization::BFGSUpdate_HInv<Scalar, DimAtCompile>::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0:   required from ‘int stan::optimization::BFGSMinimizer<FunctorType, QNUpdateType, Scalar, DimAtCompile>::step() [with FunctorType = stan::optimization::ModelAdaptor<model_shrinkage_namespace::model_shrinkage, false>; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0:   required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage; bool jacobian = false]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:15:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false> >, -1, 1, true>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false> >, -1, 1, true>, 2>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Block<const Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false> >, -1, 1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Block<const Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false> >, -1, 1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Block<const Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false> >, -1, 1, true>, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7:   required from ‘class Eigen::internal::BlockImpl_dense<const Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false> >, -1, 1, true, true>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   [ skipping 16 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/run_adaptive_sampler.hpp:57:0:   required from ‘void stan::services::util::run_adaptive_sampler(Sampler&, Model&, std::vector<double>&, int, int, int, int, bool, RNG&, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, size_t, size_t) [with Sampler = stan::mcmc::adapt_dense_e_nuts<model_shrinkage_namespace::model_shrinkage, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> > >; Model = model_shrinkage_namespace::model_shrinkage; RNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; size_t = long unsigned int]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:97:0:   required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:150:0:   required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:638:0:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:15:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 1, -1, false>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 1, -1, false>, 2>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 1, -1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 1, -1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 1, -1, false>, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7:   required from ‘class Eigen::internal::BlockImpl_dense<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 1, -1, false, true>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   [ skipping 16 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/run_adaptive_sampler.hpp:57:0:   required from ‘void stan::services::util::run_adaptive_sampler(Sampler&, Model&, std::vector<double>&, int, int, int, int, bool, RNG&, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, size_t, size_t) [with Sampler = stan::mcmc::adapt_dense_e_nuts<model_shrinkage_namespace::model_shrinkage, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> > >; Model = model_shrinkage_namespace::model_shrinkage; RNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; size_t = long unsigned int]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:97:0:   required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:150:0:   required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:638:0:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:15:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Transpose<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false> >, -1, 1, true>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Transpose<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false> >, -1, 1, true>, 2>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Block<const Eigen::Transpose<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false> >, -1, 1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Block<const Eigen::Transpose<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false> >, -1, 1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Block<const Eigen::Transpose<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false> >, -1, 1, true>, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7:   required from ‘class Eigen::internal::BlockImpl_dense<const Eigen::Transpose<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false> >, -1, 1, true, true>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   [ skipping 16 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/run_adaptive_sampler.hpp:57:0:   required from ‘void stan::services::util::run_adaptive_sampler(Sampler&, Model&, std::vector<double>&, int, int, int, int, bool, RNG&, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, size_t, size_t) [with Sampler = stan::mcmc::adapt_dense_e_nuts<model_shrinkage_namespace::model_shrinkage, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> > >; Model = model_shrinkage_namespace::model_shrinkage; RNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; size_t = long unsigned int]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:97:0:   required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:150:0:   required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:638:0:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:15:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 4, 4, 1, 4, 4> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 4, 4, 1, 4, 4> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 4, 4, 1, 4, 4> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7:   required from ‘class Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 4, 4, 1, 4, 4> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:347:30:   required from ‘Derived& Eigen::DenseBase<Derived>::setConstant(const Scalar&) [with Derived = Eigen::Matrix<double, 4, 4, 1, 4, 4>; Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:548:10:   required from ‘Derived& Eigen::DenseBase<Derived>::setZero() [with Derived = Eigen::Matrix<double, 4, 4, 1, 4, 4>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:301:29:   [ skipping 14 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19:   required from ‘Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Transpose<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0> >; Derived = Eigen::Matrix<double, -1, -1, 1, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::Transpose<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0> >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 1; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/to_ref.hpp:18:27:   required from ‘stan::ref_type_t<T&&> stan::math::to_ref(T&&) [with T = const Eigen::Transpose<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0> >&; stan::ref_type_t<T&&> = Eigen::Matrix<double, -1, -1, 1, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:27:29:   required from ‘Eigen::Matrix<typename stan::value_type<T>::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0> >; stan::require_eigen_vt<std::is_arithmetic, T>* <anonymous> = 0; typename stan::value_type<T>::type = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20:   required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0>; stan::require_eigen_t<T_desired>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>, -1, 1, true>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>, -1, 1, true>, 2>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Block<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>, -1, 1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Block<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>, -1, 1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Block<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>, -1, 1, true>, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7:   required from ‘class Eigen::internal::BlockImpl_dense<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>, -1, 1, true, true>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   [ skipping 17 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::HouseholderSequence<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, 1, -1, true>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, 1, -1, true>, 2>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Block<const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, 1, -1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Block<const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, 1, -1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Block<const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, 1, -1, true>, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7:   required from ‘class Eigen::internal::BlockImpl_dense<const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, 1, -1, true, true>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   [ skipping 17 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::HouseholderSequence<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, -1, 1, true>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, -1, 1, true>, 2>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, -1, 1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, -1, 1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, -1, 1, true>, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7:   required from ‘class Eigen::internal::BlockImpl_dense<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, -1, 1, true, true>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   [ skipping 17 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::HouseholderSequence<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator<Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::OuterStride<> >, 1, -1, true> >’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8:   required from ‘struct Eigen::internal::evaluator<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::OuterStride<> >, 1, -1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1043:41:   required from ‘struct Eigen::internal::evaluator<Eigen::Block<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8:   required from ‘struct Eigen::internal::evaluator<const Eigen::Block<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:311:41:   required from ‘struct Eigen::internal::unary_evaluator<Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >, Eigen::internal::IndexBased, double>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8:   required from ‘struct Eigen::internal::evaluator<Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8:   [ skipping 19 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/run_adaptive_sampler.hpp:57:0:   required from ‘void stan::services::util::run_adaptive_sampler(Sampler&, Model&, std::vector<double>&, int, int, int, int, bool, RNG&, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, size_t, size_t) [with Sampler = stan::mcmc::adapt_dense_e_nuts<model_shrinkage_namespace::model_shrinkage, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> > >; Model = model_shrinkage_namespace::model_shrinkage; RNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; size_t = long unsigned int]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:97:0:   required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:150:0:   required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:638:0:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:15:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
 1071 |     PacketAlignment = unpacket_traits<PacketScalar>::alignment,
      |                                                      ^~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator<Eigen::Block<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8:   required from ‘struct Eigen::internal::evaluator<const Eigen::Block<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:311:41:   required from ‘struct Eigen::internal::unary_evaluator<Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >, Eigen::internal::IndexBased, double>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8:   required from ‘struct Eigen::internal::evaluator<Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8:   required from ‘struct Eigen::internal::evaluator<const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:41:   required from ‘struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >, const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8:   [ skipping 17 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/run_adaptive_sampler.hpp:57:0:   required from ‘void stan::services::util::run_adaptive_sampler(Sampler&, Model&, std::vector<double>&, int, int, int, int, bool, RNG&, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, size_t, size_t) [with Sampler = stan::mcmc::adapt_dense_e_nuts<model_shrinkage_namespace::model_shrinkage, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> > >; Model = model_shrinkage_namespace::model_shrinkage; RNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; size_t = long unsigned int]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:97:0:   required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:150:0:   required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:638:0:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:15:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 8, 1, 0, 8, 1>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 8, 1, 0, 8, 1>, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 8, 1, 0, 8, 1>, 3>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Matrix<double, 8, 1, 0, 8, 1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Matrix<double, 8, 1, 0, 8, 1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<double, 8, 1, 0, 8, 1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   [ skipping 18 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123:20:   required from ‘stan::math::arena_matrix<MatrixType, typename std::enable_if<stan::is_eigen_dense_base<typename std::decay<_Tp>::type>::value, void>::type>& stan::math::arena_matrix<MatrixType, typename std::enable_if<stan::is_eigen_dense_base<typename std::decay<_Tp>::type>::value, void>::type>::operator=(const T&) [with T = Eigen::Product<Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0>; MatrixType = Eigen::Matrix<double, -1, -1>; typename std::enable_if<stan::is_eigen_dense_base<typename std::decay<_Tp>::type>::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:68:11:   required from ‘stan::math::arena_matrix<MatrixType, typename std::enable_if<stan::is_eigen_dense_base<typename std::decay<_Tp>::type>::value, void>::type>::arena_matrix(const T&) [with T = Eigen::Product<Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_eigen_t<T>* <anonymous> = 0; MatrixType = Eigen::Matrix<double, -1, -1>; typename std::enable_if<stan::is_eigen_dense_base<typename std::decay<_Tp>::type>::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/vari.hpp:722:9:   required from ‘stan::math::vari_value<T, typename std::enable_if<stan::math::conjunction<std::is_same<typename std::decay<_Tp>::type, typename stan::plain_type<T, void>::type>, stan::is_eigen_dense_base<T> >::value, void>::type>::vari_value(const S&, bool) [with S = Eigen::Product<Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_assignable_t<T, S>* <anonymous> = 0; T = Eigen::Matrix<double, -1, -1>; typename std::enable_if<stan::math::conjunction<std::is_same<typename std::decay<_Tp>::type, typename stan::plain_type<T, void>::type>, stan::is_eigen_dense_base<T> >::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix<double, -1, -1>; typename stan::plain_type<T>::type = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/var.hpp:366:26:   required from ‘stan::math::var_value<T, typename std::enable_if<std::integral_constant<bool, ((stan::is_eigen<T>::value || stan::is_kernel_expression_and_not_scalar<T>::value) && std::is_floating_point<typename stan::value_type<T>::type>::value)>::value, void>::type>::var_value(S&&) [with S = const Eigen::Product<Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_assignable_t<T, S>* <anonymous> = 0; T = Eigen::Matrix<double, -1, -1>; typename std::enable_if<std::integral_constant<bool, ((stan::is_eigen<T>::value || stan::is_kernel_expression_and_not_scalar<T>::value) && std::is_floating_point<typename stan::value_type<T>::type>::value)>::value, void>::type = void; typename stan::value_type<T>::type = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply_lower_tri_self_transpose.hpp:27:0:   required from ‘auto stan::math::multiply_lower_tri_self_transpose(const T&) [with T = var_value<Eigen::Matrix<double, -1, -1> >; stan::require_rev_matrix_t<T>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cov_matrix_constrain.hpp:59:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   56 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator<Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, -1, -1, true> >’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:774:20:   required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; SrcXprType = Eigen::Block<const Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, -1, -1, true>; Functor = sub_assign_op<double, double>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31:   required from ‘static void Eigen::internal::Assignment<DstXprType, SrcXprType, Functor, Eigen::internal::Dense2Dense, Weak>::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; SrcXprType = Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, -1, -1, true>; Functor = Eigen::internal::sub_assign_op<double, double>; Weak = void]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Src = Eigen::Block<const Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, -1, -1, true>; Func = sub_assign_op<double, double>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing<Src>::value), void*>::type) [with Dst = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Src = Eigen::Block<const Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, -1, -1, true>; Func = sub_assign_op<double, double>; typename enable_if<(! evaluator_assume_aliasing<Src>::value), void*>::type = void*; typename evaluator_traits<SrcXprType>::Shape = Eigen::DenseShape]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:164:18:   required from ‘Derived& Eigen::MatrixBase<Derived>::operator-=(const Eigen::MatrixBase<OtherDerived>&) [with OtherDerived = Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > > >, -1, -1, true>; Derived = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:457:31:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123:20:   required from ‘stan::math::arena_matrix<MatrixType, typename std::enable_if<stan::is_eigen_dense_base<typename std::decay<_Tp>::type>::value, void>::type>& stan::math::arena_matrix<MatrixType, typename std::enable_if<stan::is_eigen_dense_base<typename std::decay<_Tp>::type>::value, void>::type>::operator=(const T&) [with T = Eigen::Product<Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0>; MatrixType = Eigen::Matrix<double, -1, -1>; typename std::enable_if<stan::is_eigen_dense_base<typename std::decay<_Tp>::type>::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:68:11:   required from ‘stan::math::arena_matrix<MatrixType, typename std::enable_if<stan::is_eigen_dense_base<typename std::decay<_Tp>::type>::value, void>::type>::arena_matrix(const T&) [with T = Eigen::Product<Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_eigen_t<T>* <anonymous> = 0; MatrixType = Eigen::Matrix<double, -1, -1>; typename std::enable_if<stan::is_eigen_dense_base<typename std::decay<_Tp>::type>::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/vari.hpp:722:9:   required from ‘stan::math::vari_value<T, typename std::enable_if<stan::math::conjunction<std::is_same<typename std::decay<_Tp>::type, typename stan::plain_type<T, void>::type>, stan::is_eigen_dense_base<T> >::value, void>::type>::vari_value(const S&, bool) [with S = Eigen::Product<Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_assignable_t<T, S>* <anonymous> = 0; T = Eigen::Matrix<double, -1, -1>; typename std::enable_if<stan::math::conjunction<std::is_same<typename std::decay<_Tp>::type, typename stan::plain_type<T, void>::type>, stan::is_eigen_dense_base<T> >::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix<double, -1, -1>; typename stan::plain_type<T>::type = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/var.hpp:366:26:   required from ‘stan::math::var_value<T, typename std::enable_if<std::integral_constant<bool, ((stan::is_eigen<T>::value || stan::is_kernel_expression_and_not_scalar<T>::value) && std::is_floating_point<typename stan::value_type<T>::type>::value)>::value, void>::type>::var_value(S&&) [with S = const Eigen::Product<Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_assignable_t<T, S>* <anonymous> = 0; T = Eigen::Matrix<double, -1, -1>; typename std::enable_if<std::integral_constant<bool, ((stan::is_eigen<T>::value || stan::is_kernel_expression_and_not_scalar<T>::value) && std::is_floating_point<typename stan::value_type<T>::type>::value)>::value, void>::type = void; typename stan::value_type<T>::type = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply_lower_tri_self_transpose.hpp:27:0:   required from ‘auto stan::math::multiply_lower_tri_self_transpose(const T&) [with T = var_value<Eigen::Matrix<double, -1, -1> >; stan::require_rev_matrix_t<T>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cov_matrix_constrain.hpp:59:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
 1071 |     PacketAlignment = unpacket_traits<PacketScalar>::alignment,
      |                                                      ^~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator<Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, -1, true> >’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8:   required from ‘struct Eigen::internal::evaluator<const Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, -1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78:   required from ‘struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, -1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8:   required from ‘struct Eigen::internal::evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, -1, true> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:774:20:   required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true>; SrcXprType = Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, -1, true> >; Functor = sub_assign_op<double, double>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31:   required from ‘static void Eigen::internal::Assignment<DstXprType, SrcXprType, Functor, Eigen::internal::Dense2Dense, Weak>::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true>; SrcXprType = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Block<const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, -1, -1, true> >; Functor = Eigen::internal::sub_assign_op<double, double>; Weak = void]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49:   [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:123:20:   required from ‘stan::math::arena_matrix<MatrixType, typename std::enable_if<stan::is_eigen_dense_base<typename std::decay<_Tp>::type>::value, void>::type>& stan::math::arena_matrix<MatrixType, typename std::enable_if<stan::is_eigen_dense_base<typename std::decay<_Tp>::type>::value, void>::type>::operator=(const T&) [with T = Eigen::Product<Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0>; MatrixType = Eigen::Matrix<double, -1, -1>; typename std::enable_if<stan::is_eigen_dense_base<typename std::decay<_Tp>::type>::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/arena_matrix.hpp:68:11:   required from ‘stan::math::arena_matrix<MatrixType, typename std::enable_if<stan::is_eigen_dense_base<typename std::decay<_Tp>::type>::value, void>::type>::arena_matrix(const T&) [with T = Eigen::Product<Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_eigen_t<T>* <anonymous> = 0; MatrixType = Eigen::Matrix<double, -1, -1>; typename std::enable_if<stan::is_eigen_dense_base<typename std::decay<_Tp>::type>::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/vari.hpp:722:9:   required from ‘stan::math::vari_value<T, typename std::enable_if<stan::math::conjunction<std::is_same<typename std::decay<_Tp>::type, typename stan::plain_type<T, void>::type>, stan::is_eigen_dense_base<T> >::value, void>::type>::vari_value(const S&, bool) [with S = Eigen::Product<Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_assignable_t<T, S>* <anonymous> = 0; T = Eigen::Matrix<double, -1, -1>; typename std::enable_if<stan::math::conjunction<std::is_same<typename std::decay<_Tp>::type, typename stan::plain_type<T, void>::type>, stan::is_eigen_dense_base<T> >::value, void>::type = void; typename std::decay<_Tp>::type = Eigen::Matrix<double, -1, -1>; typename stan::plain_type<T>::type = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/var.hpp:366:26:   required from ‘stan::math::var_value<T, typename std::enable_if<std::integral_constant<bool, ((stan::is_eigen<T>::value || stan::is_kernel_expression_and_not_scalar<T>::value) && std::is_floating_point<typename stan::value_type<T>::type>::value)>::value, void>::type>::var_value(S&&) [with S = const Eigen::Product<Eigen::TriangularView<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1>, Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> > >, 0>; stan::require_assignable_t<T, S>* <anonymous> = 0; T = Eigen::Matrix<double, -1, -1>; typename std::enable_if<std::integral_constant<bool, ((stan::is_eigen<T>::value || stan::is_kernel_expression_and_not_scalar<T>::value) && std::is_floating_point<typename stan::value_type<T>::type>::value)>::value, void>::type = void; typename stan::value_type<T>::type = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/multiply_lower_tri_self_transpose.hpp:27:0:   required from ‘auto stan::math::multiply_lower_tri_self_transpose(const T&) [with T = var_value<Eigen::Matrix<double, -1, -1> >; stan::require_rev_matrix_t<T>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/cov_matrix_constrain.hpp:59:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, 1, -1>, 0, Eigen::Stride<0, 0> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, 1, -1>, 0, Eigen::Stride<0, 0> > >, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, 1, -1>, 0, Eigen::Stride<0, 0> > >, 3>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, 1, -1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, 1, -1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37:   required from ‘class Eigen::TransposeImpl<Eigen::Map<Eigen::Matrix<double, 1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   [ skipping 17 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::HouseholderSequence<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   56 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false> >, 2>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Transpose<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Transpose<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37:   required from ‘class Eigen::TransposeImpl<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   required from ‘class Eigen::Transpose<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:207:26:   [ skipping 16 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::HouseholderSequence<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> > >, 2>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Transpose<const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Transpose<const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37:   required from ‘class Eigen::TransposeImpl<const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   required from ‘class Eigen::Transpose<const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:207:43:   [ skipping 16 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::HouseholderSequence<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true> >’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1043:41:   required from ‘struct Eigen::internal::evaluator<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8:   required from ‘struct Eigen::internal::evaluator<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78:   required from ‘struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8:   required from ‘struct Eigen::internal::evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:774:20:   required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false>; SrcXprType = Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false> >; Functor = add_assign_op<double, double>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31:   [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::HouseholderSequence<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
 1071 |     PacketAlignment = unpacket_traits<PacketScalar>::alignment,
      |                                                      ^~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false> >’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8:   required from ‘struct Eigen::internal::evaluator<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78:   required from ‘struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8:   required from ‘struct Eigen::internal::evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:774:20:   required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false>; SrcXprType = Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false> >; Functor = add_assign_op<double, double>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31:   required from ‘static void Eigen::internal::Assignment<DstXprType, SrcXprType, Functor, Eigen::internal::Dense2Dense, Weak>::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false>; SrcXprType = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false> >; Functor = Eigen::internal::add_assign_op<double, double>; Weak = void]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49:   [ skipping 14 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::HouseholderSequence<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator<Eigen::Block<const Eigen::Block<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, -1>, 0>, 1, -1, false>, 1, -1, true> >’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8:   required from ‘struct Eigen::internal::evaluator<const Eigen::Block<const Eigen::Block<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, -1>, 0>, 1, -1, false>, 1, -1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:311:41:   required from ‘struct Eigen::internal::unary_evaluator<Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, -1>, 0>, 1, -1, false>, 1, -1, true> >, Eigen::internal::IndexBased, double>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8:   required from ‘struct Eigen::internal::evaluator<Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, -1>, 0>, 1, -1, false>, 1, -1, true> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8:   required from ‘struct Eigen::internal::evaluator<const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, -1>, 0>, 1, -1, false>, 1, -1, true> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:41:   required from ‘struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, -1>, 0>, 1, -1, false>, 1, -1, true> >, const Eigen::Block<const Eigen::Transpose<Eigen::Matrix<double, -1, -1> >, -1, 1, false> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8:   [ skipping 18 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:40:0:   required from ‘Scalar stan::optimization::BFGSUpdate_HInv<Scalar, DimAtCompile>::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0:   required from ‘int stan::optimization::BFGSMinimizer<FunctorType, QNUpdateType, Scalar, DimAtCompile>::step() [with FunctorType = stan::optimization::ModelAdaptor<model_shrinkage_namespace::model_shrinkage, false>; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0:   required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage; bool jacobian = false]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:15:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false> >, const Eigen::Block<const Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false> >, -1, 1, true> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false> >, const Eigen::Block<const Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false> >, -1, 1, true> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false> >, const Eigen::Block<const Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false> >, -1, 1, true> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false> >, const Eigen::Block<const Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false> >, -1, 1, true>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false> >, const Eigen::Block<const Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false> >, -1, 1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:56:   required from ‘static Eigen::internal::dot_nocheck<T, U, true>::ResScalar Eigen::internal::dot_nocheck<T, U, true>::run(const Eigen::MatrixBase<Derived>&, const Eigen::MatrixBase<U>&) [with T = Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false>; U = Eigen::Block<const Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false> >, -1, 1, true>; ResScalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58:   [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/run_adaptive_sampler.hpp:57:0:   required from ‘void stan::services::util::run_adaptive_sampler(Sampler&, Model&, std::vector<double>&, int, int, int, int, bool, RNG&, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, size_t, size_t) [with Sampler = stan::mcmc::adapt_dense_e_nuts<model_shrinkage_namespace::model_shrinkage, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> > >; Model = model_shrinkage_namespace::model_shrinkage; RNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; size_t = long unsigned int]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:97:0:   required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:150:0:   required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:638:0:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:15:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   56 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 1, -1, false> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 1, -1, false> >, 2>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 1, -1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 1, -1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37:   required from ‘class Eigen::TransposeImpl<const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 1, -1, false>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   required from ‘class Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 1, -1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:23:   [ skipping 16 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/run_adaptive_sampler.hpp:57:0:   required from ‘void stan::services::util::run_adaptive_sampler(Sampler&, Model&, std::vector<double>&, int, int, int, int, bool, RNG&, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, size_t, size_t) [with Sampler = stan::mcmc::adapt_dense_e_nuts<model_shrinkage_namespace::model_shrinkage, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> > >; Model = model_shrinkage_namespace::model_shrinkage; RNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; size_t = long unsigned int]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:97:0:   required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:150:0:   required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:638:0:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:15:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 1, -1, false> >, const Eigen::Block<const Eigen::Transpose<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false> >, -1, 1, true> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 1, -1, false> >, const Eigen::Block<const Eigen::Transpose<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false> >, -1, 1, true> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 1, -1, false> >, const Eigen::Block<const Eigen::Transpose<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false> >, -1, 1, true> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 1, -1, false> >, const Eigen::Block<const Eigen::Transpose<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false> >, -1, 1, true>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 1, -1, false> >, const Eigen::Block<const Eigen::Transpose<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false> >, -1, 1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:56:   required from ‘static Eigen::internal::dot_nocheck<T, U, true>::ResScalar Eigen::internal::dot_nocheck<T, U, true>::run(const Eigen::MatrixBase<Derived>&, const Eigen::MatrixBase<U>&) [with T = Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 1, -1, false>; U = Eigen::Block<const Eigen::Transpose<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false> >, -1, 1, true>; ResScalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58:   [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/run_adaptive_sampler.hpp:57:0:   required from ‘void stan::services::util::run_adaptive_sampler(Sampler&, Model&, std::vector<double>&, int, int, int, int, bool, RNG&, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, size_t, size_t) [with Sampler = stan::mcmc::adapt_dense_e_nuts<model_shrinkage_namespace::model_shrinkage, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> > >; Model = model_shrinkage_namespace::model_shrinkage; RNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; size_t = long unsigned int]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:97:0:   required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:150:0:   required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:638:0:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:15:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator<Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> > >, -1, -1, true> >’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:774:20:   required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; SrcXprType = Eigen::Block<const Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> > >, -1, -1, true>; Functor = sub_assign_op<double, double>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31:   required from ‘static void Eigen::internal::Assignment<DstXprType, SrcXprType, Functor, Eigen::internal::Dense2Dense, Weak>::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; SrcXprType = Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> > >, -1, -1, true>; Functor = Eigen::internal::sub_assign_op<double, double>; Weak = void]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Src = Eigen::Block<const Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> > >, -1, -1, true>; Func = sub_assign_op<double, double>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing<Src>::value), void*>::type) [with Dst = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Src = Eigen::Block<const Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> > >, -1, -1, true>; Func = sub_assign_op<double, double>; typename enable_if<(! evaluator_assume_aliasing<Src>::value), void*>::type = void*; typename evaluator_traits<SrcXprType>::Shape = Eigen::DenseShape]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:164:18:   required from ‘Derived& Eigen::MatrixBase<Derived>::operator-=(const Eigen::MatrixBase<OtherDerived>&) [with OtherDerived = Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> > >, -1, -1, true>; Derived = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:457:31:   [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19:   required from ‘Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Transpose<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0> >; Derived = Eigen::Matrix<double, -1, -1, 1, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::Transpose<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0> >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 1; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/to_ref.hpp:18:27:   required from ‘stan::ref_type_t<T&&> stan::math::to_ref(T&&) [with T = const Eigen::Transpose<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0> >&; stan::ref_type_t<T&&> = Eigen::Matrix<double, -1, -1, 1, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:27:29:   required from ‘Eigen::Matrix<typename stan::value_type<T>::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0> >; stan::require_eigen_vt<std::is_arithmetic, T>* <anonymous> = 0; typename stan::value_type<T>::type = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20:   required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0>; stan::require_eigen_t<T_desired>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
 1071 |     PacketAlignment = unpacket_traits<PacketScalar>::alignment,
      |                                                      ^~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator<Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, -1, true> >’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8:   required from ‘struct Eigen::internal::evaluator<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, -1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78:   required from ‘struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, -1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8:   required from ‘struct Eigen::internal::evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, -1, true> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:774:20:   required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true>; SrcXprType = Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, -1, true> >; Functor = sub_assign_op<double, double>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31:   required from ‘static void Eigen::internal::Assignment<DstXprType, SrcXprType, Functor, Eigen::internal::Dense2Dense, Weak>::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true>; SrcXprType = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, -1, true> >; Functor = Eigen::internal::sub_assign_op<double, double>; Weak = void]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49:   [ skipping 16 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19:   required from ‘Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Transpose<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0> >; Derived = Eigen::Matrix<double, -1, -1, 1, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::Transpose<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0> >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 1; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/to_ref.hpp:18:27:   required from ‘stan::ref_type_t<T&&> stan::math::to_ref(T&&) [with T = const Eigen::Transpose<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0> >&; stan::ref_type_t<T&&> = Eigen::Matrix<double, -1, -1, 1, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/tcrossprod.hpp:27:29:   required from ‘Eigen::Matrix<typename stan::value_type<T>::type, T::RowsAtCompileTime, T::RowsAtCompileTime> stan::math::tcrossprod(const T&) [with T = Eigen::Transpose<const Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0> >; stan::require_eigen_vt<std::is_arithmetic, T>* <anonymous> = 0; typename stan::value_type<T>::type = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/fun/crossprod.hpp:21:20:   required from ‘auto stan::math::crossprod(const EigMat&) [with EigMat = Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>, 0>; stan::require_eigen_t<T_desired>* <anonymous> = 0]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/prim/prob/wishart_rng.hpp:34:19:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 1, -1, false> >, const Eigen::Block<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>, -1, 1, true> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 1, -1, false> >, const Eigen::Block<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>, -1, 1, true> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 1, -1, false> >, const Eigen::Block<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>, -1, 1, true> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 1, -1, false> >, const Eigen::Block<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>, -1, 1, true>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 1, -1, false> >, const Eigen::Block<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>, -1, 1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:56:   required from ‘static Eigen::internal::dot_nocheck<T, U, true>::ResScalar Eigen::internal::dot_nocheck<T, U, true>::run(const Eigen::MatrixBase<Derived>&, const Eigen::MatrixBase<U>&) [with T = Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 1, -1, false>; U = Eigen::Block<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>, -1, 1, true>; ResScalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58:   [ skipping 16 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::HouseholderSequence<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   56 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, 1, -1, true> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, 1, -1, true> >, 2>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, 1, -1, true> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, 1, -1, true> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37:   required from ‘class Eigen::TransposeImpl<const Eigen::Block<const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, 1, -1, true>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   required from ‘class Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, 1, -1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:23:   [ skipping 17 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::HouseholderSequence<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, 1, -1, true> >, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, -1, 1, true> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, 1, -1, true> >, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, -1, 1, true> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, 1, -1, true> >, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, -1, 1, true> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, 1, -1, true> >, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, -1, 1, true>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, 1, -1, true> >, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, -1, 1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:56:   required from ‘static Eigen::internal::dot_nocheck<T, U, true>::ResScalar Eigen::internal::dot_nocheck<T, U, true>::run(const Eigen::MatrixBase<Derived>&, const Eigen::MatrixBase<U>&) [with T = Eigen::Block<const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, 1, -1, true>; U = Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, -1, 1, true>; ResScalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58:   [ skipping 16 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::HouseholderSequence<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, 1, -1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, 1, -1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true>, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, 1, -1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true>, 3>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Block<Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, 1, -1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Block<Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, 1, -1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Block<Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, 1, -1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true>, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34:   [ skipping 21 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::HouseholderSequence<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, -1, -1, false>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, -1, -1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, -1, -1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:172:103:   required from ‘class Eigen::internal::BlockImpl_dense<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, -1, -1, false, false>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   required from ‘class Eigen::BlockImpl<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, -1, -1, false, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81:   required from ‘class Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, -1, -1, false>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:457:74:   [ skipping 17 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::HouseholderSequence<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, true>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, true>, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, true>, 3>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, true>, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34:   [ skipping 21 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::HouseholderSequence<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, true>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, true>, 2>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, true>, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7:   required from ‘class Eigen::internal::BlockImpl_dense<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, true, true>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   [ skipping 19 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::HouseholderSequence<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, true> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, true> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, true> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, true>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:462:59:   required from ‘static void Eigen::internal::triangular_product_impl<Mode, LhsIsTriangular, Lhs, false, Rhs, false>::run(Dest&, const Lhs&, const Rhs&, const typename Dest::Scalar&) [with Dest = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; int Mode = 5; bool LhsIsTriangular = true; Lhs = const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Rhs = Eigen::Matrix<double, -1, -1>; typename Dest::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:770:14:   [ skipping 16 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::HouseholderSequence<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase<Derived>&) [with Derived = Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >, const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > >; Eigen::Index = long int]’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63:   required from ‘static Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::Scalar Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >, const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::scalar_sum_op<double, double>; Evaluator = Eigen::internal::redux_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >, const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > > >; Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56:   required from ‘typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >, const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > >; typename Eigen::internal::traits<T>::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25:   required from ‘typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::sum() const [with Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >, const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > >; typename Eigen::internal::traits<T>::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularSolverVector.h:78:127:   required from ‘static void Eigen::internal::triangular_solve_vector<LhsScalar, RhsScalar, Index, 1, Mode, Conjugate, 1>::run(Index, const LhsScalar*, Index, RhsScalar*) [with LhsScalar = double; RhsScalar = double; Index = long int; int Mode = 2; bool Conjugate = false]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/SolveTriangular.h:73:12:   required from ‘static void Eigen::internal::triangular_solver_selector<Lhs, Rhs, Side, Mode, 0, 1>::run(const Lhs&, Rhs&) [with Lhs = const Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >; Rhs = Eigen::Matrix<double, -1, 1>; int Side = 1; int Mode = 2]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/SolveTriangular.h:182:21:   [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/run_adaptive_sampler.hpp:57:0:   required from ‘void stan::services::util::run_adaptive_sampler(Sampler&, Model&, std::vector<double>&, int, int, int, int, bool, RNG&, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, size_t, size_t) [with Sampler = stan::mcmc::adapt_dense_e_nuts<model_shrinkage_namespace::model_shrinkage, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> > >; Model = model_shrinkage_namespace::model_shrinkage; RNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; size_t = long unsigned int]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:97:0:   required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:150:0:   required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:638:0:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:15:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
  654 |   return internal::first_aligned<int(unpacket_traits<DefaultPacketType>::alignment),Derived>(m);
      |                                                                          ^~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false> >, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false> >, 3>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Transpose<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Transpose<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37:   required from ‘class Eigen::TransposeImpl<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   [ skipping 19 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::HouseholderSequence<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   56 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false> >, 2>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37:   required from ‘class Eigen::TransposeImpl<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   required from ‘class Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixVector.h:194:32:   [ skipping 18 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::HouseholderSequence<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Transpose<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Transpose<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37:   required from ‘class Eigen::TransposeImpl<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   required from ‘class Eigen::Transpose<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixVector.h:194:48:   required from ‘static void Eigen::internal::triangular_product_impl<Mode, false, Lhs, true, Rhs, false>::run(Dest&, const Lhs&, const Rhs&, const typename Dest::Scalar&) [with Dest = Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false>; int Mode = 5; Lhs = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > >; Rhs = const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>; typename Dest::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:783:113:   [ skipping 17 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::HouseholderSequence<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, -1, 1, false> >’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:780:20:   required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, -1, 1, false>; SrcXprType = Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 2, Eigen::Stride<0, 0> > >; Functor = add_assign_op<double, double>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31:   required from ‘static void Eigen::internal::Assignment<DstXprType, SrcXprType, Functor, Eigen::internal::Dense2Dense, Weak>::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, -1, 1, false>; SrcXprType = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 2, Eigen::Stride<0, 0> > >; Functor = Eigen::internal::add_assign_op<double, double>; Weak = void]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, -1, 1, false>; Src = Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 2, Eigen::Stride<0, 0> > >; Func = add_assign_op<double, double>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing<Src>::value), void*>::type) [with Dst = Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, -1, 1, false>; Src = Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 2, Eigen::Stride<0, 0> > >; Func = add_assign_op<double, double>; typename enable_if<(! evaluator_assume_aliasing<Src>::value), void*>::type = void*; typename evaluator_traits<SrcXprType>::Shape = Eigen::DenseShape]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:177:18:   required from ‘Derived& Eigen::MatrixBase<Derived>::operator+=(const Eigen::MatrixBase<OtherDerived>&) [with OtherDerived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 2, Eigen::Stride<0, 0> > >; Derived = Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, -1, 1, false>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:296:25:   [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:40:0:   required from ‘Scalar stan::optimization::BFGSUpdate_HInv<Scalar, DimAtCompile>::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0:   required from ‘int stan::optimization::BFGSMinimizer<FunctorType, QNUpdateType, Scalar, DimAtCompile>::step() [with FunctorType = stan::optimization::ModelAdaptor<model_shrinkage_namespace::model_shrinkage, false>; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0:   required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage; bool jacobian = false]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:15:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
 1071 |     PacketAlignment = unpacket_traits<PacketScalar>::alignment,
      |                                                      ^~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Product<Eigen::Matrix<double, -1, -1>, const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, true>, 0>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Product<Eigen::Matrix<double, -1, -1>, const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, true>, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Product<Eigen::Matrix<double, -1, -1>, const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, true>, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7:   required from ‘class Eigen::internal::dense_product_base<Eigen::Matrix<double, -1, -1>, const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, true>, 0, 7>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7:   required from ‘class Eigen::ProductImpl<Eigen::Matrix<double, -1, -1>, const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, true>, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product<Eigen::Matrix<double, -1, -1>, const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, true>, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:345:45:   [ skipping 20 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:40:0:   required from ‘Scalar stan::optimization::BFGSUpdate_HInv<Scalar, DimAtCompile>::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0:   required from ‘int stan::optimization::BFGSMinimizer<FunctorType, QNUpdateType, Scalar, DimAtCompile>::step() [with FunctorType = stan::optimization::ModelAdaptor<model_shrinkage_namespace::model_shrinkage, false>; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0:   required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage; bool jacobian = false]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:15:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   56 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, true>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, true>, 2>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, true>, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7:   required from ‘class Eigen::internal::BlockImpl_dense<const Eigen::Matrix<double, -1, -1>, -1, 1, true, true>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   [ skipping 23 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:40:0:   required from ‘Scalar stan::optimization::BFGSUpdate_HInv<Scalar, DimAtCompile>::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0:   required from ‘int stan::optimization::BFGSMinimizer<FunctorType, QNUpdateType, Scalar, DimAtCompile>::step() [with FunctorType = stan::optimization::ModelAdaptor<model_shrinkage_namespace::model_shrinkage, false>; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0:   required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage; bool jacobian = false]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:15:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator<Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, true> >’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8:   required from ‘struct Eigen::internal::evaluator<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:372:102:   required from ‘struct Eigen::internal::plain_object_eval<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, true>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:370:45:   required from ‘struct Eigen::internal::generic_product_impl<Eigen::Matrix<double, -1, -1>, const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, true>, Eigen::DenseShape, Eigen::DenseShape, 7>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:479:24:   required from ‘static void Eigen::internal::generic_product_impl<Lhs, Rhs, Eigen::DenseShape, Eigen::DenseShape, 8>::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Matrix<double, -1, -1>; Lhs = Eigen::Matrix<double, -1, -1>; Rhs = Eigen::Matrix<double, -1, -1>; Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:445:20:   required from ‘static void Eigen::internal::generic_product_impl<Lhs, Rhs, Eigen::DenseShape, Eigen::DenseShape, 8>::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix<double, -1, -1>; Lhs = Eigen::Matrix<double, -1, -1>; Rhs = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43:   [ skipping 16 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:40:0:   required from ‘Scalar stan::optimization::BFGSUpdate_HInv<Scalar, DimAtCompile>::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0:   required from ‘int stan::optimization::BFGSMinimizer<FunctorType, QNUpdateType, Scalar, DimAtCompile>::step() [with FunctorType = stan::optimization::ModelAdaptor<model_shrinkage_namespace::model_shrinkage, false>; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0:   required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage; bool jacobian = false]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:15:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
 1071 |     PacketAlignment = unpacket_traits<PacketScalar>::alignment,
      |                                                      ^~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Product<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, 1, -1, false>, Eigen::Matrix<double, -1, -1>, 0>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Product<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, 1, -1, false>, Eigen::Matrix<double, -1, -1>, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Product<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, 1, -1, false>, Eigen::Matrix<double, -1, -1>, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7:   required from ‘class Eigen::internal::dense_product_base<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, 1, -1, false>, Eigen::Matrix<double, -1, -1>, 0, 7>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7:   required from ‘class Eigen::ProductImpl<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, 1, -1, false>, Eigen::Matrix<double, -1, -1>, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, 1, -1, false>, Eigen::Matrix<double, -1, -1>, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:345:45:   [ skipping 20 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:40:0:   required from ‘Scalar stan::optimization::BFGSUpdate_HInv<Scalar, DimAtCompile>::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0:   required from ‘int stan::optimization::BFGSMinimizer<FunctorType, QNUpdateType, Scalar, DimAtCompile>::step() [with FunctorType = stan::optimization::ModelAdaptor<model_shrinkage_namespace::model_shrinkage, false>; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0:   required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage; bool jacobian = false]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:15:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   56 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator<Eigen::Block<const Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false> >, -1, 1, true> >’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8:   required from ‘struct Eigen::internal::evaluator<const Eigen::Block<const Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false> >, -1, 1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78:   required from ‘struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false> >, const Eigen::Block<const Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false> >, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8:   required from ‘struct Eigen::internal::evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false> >, const Eigen::Block<const Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false> >, -1, 1, true> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7:   required from ‘class Eigen::internal::redux_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false> >, const Eigen::Block<const Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false> >, -1, 1, true> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:414:17:   required from ‘typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false> >, const Eigen::Block<const Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false> >, -1, 1, true> >; typename Eigen::internal::traits<T>::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25:   [ skipping 17 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/run_adaptive_sampler.hpp:57:0:   required from ‘void stan::services::util::run_adaptive_sampler(Sampler&, Model&, std::vector<double>&, int, int, int, int, bool, RNG&, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, size_t, size_t) [with Sampler = stan::mcmc::adapt_dense_e_nuts<model_shrinkage_namespace::model_shrinkage, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> > >; Model = model_shrinkage_namespace::model_shrinkage; RNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; size_t = long unsigned int]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:97:0:   required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:150:0:   required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:638:0:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:15:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
 1071 |     PacketAlignment = unpacket_traits<PacketScalar>::alignment,
      |                                                      ^~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator<Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 1, -1, false> >’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8:   required from ‘struct Eigen::internal::evaluator<const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 1, -1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:311:41:   required from ‘struct Eigen::internal::unary_evaluator<Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 1, -1, false> >, Eigen::internal::IndexBased, double>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8:   required from ‘struct Eigen::internal::evaluator<Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 1, -1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8:   required from ‘struct Eigen::internal::evaluator<const Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 1, -1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:41:   required from ‘struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 1, -1, false> >, const Eigen::Block<const Eigen::Transpose<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false> >, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8:   [ skipping 20 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/run_adaptive_sampler.hpp:57:0:   required from ‘void stan::services::util::run_adaptive_sampler(Sampler&, Model&, std::vector<double>&, int, int, int, int, bool, RNG&, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, size_t, size_t) [with Sampler = stan::mcmc::adapt_dense_e_nuts<model_shrinkage_namespace::model_shrinkage, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> > >; Model = model_shrinkage_namespace::model_shrinkage; RNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; size_t = long unsigned int]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:97:0:   required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:150:0:   required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:638:0:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:15:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator<Eigen::Block<const Eigen::Transpose<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false> >, -1, 1, true> >’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8:   required from ‘struct Eigen::internal::evaluator<const Eigen::Block<const Eigen::Transpose<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false> >, -1, 1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78:   required from ‘struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 1, -1, false> >, const Eigen::Block<const Eigen::Transpose<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false> >, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8:   required from ‘struct Eigen::internal::evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 1, -1, false> >, const Eigen::Block<const Eigen::Transpose<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false> >, -1, 1, true> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7:   required from ‘class Eigen::internal::redux_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 1, -1, false> >, const Eigen::Block<const Eigen::Transpose<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false> >, -1, 1, true> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:414:17:   required from ‘typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 1, -1, false> >, const Eigen::Block<const Eigen::Transpose<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false> >, -1, 1, true> >; typename Eigen::internal::traits<T>::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25:   [ skipping 17 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/util/run_adaptive_sampler.hpp:57:0:   required from ‘void stan::services::util::run_adaptive_sampler(Sampler&, Model&, std::vector<double>&, int, int, int, int, bool, RNG&, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, size_t, size_t) [with Sampler = stan::mcmc::adapt_dense_e_nuts<model_shrinkage_namespace::model_shrinkage, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> > >; Model = model_shrinkage_namespace::model_shrinkage; RNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; size_t = long unsigned int]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:97:0:   required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:150:0:   required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:638:0:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:15:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator<Eigen::Block<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>, -1, 1, true> >’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8:   required from ‘struct Eigen::internal::evaluator<const Eigen::Block<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>, -1, 1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78:   required from ‘struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 1, -1, false> >, const Eigen::Block<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8:   required from ‘struct Eigen::internal::evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 1, -1, false> >, const Eigen::Block<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>, -1, 1, true> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7:   required from ‘class Eigen::internal::redux_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 1, -1, false> >, const Eigen::Block<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>, -1, 1, true> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:414:17:   required from ‘typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 1, -1, false> >, const Eigen::Block<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>, -1, 1, true> >; typename Eigen::internal::traits<T>::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25:   [ skipping 18 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::HouseholderSequence<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator<Eigen::Block<const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, 1, -1, true> >’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8:   required from ‘struct Eigen::internal::evaluator<const Eigen::Block<const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, 1, -1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:311:41:   required from ‘struct Eigen::internal::unary_evaluator<Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, 1, -1, true> >, Eigen::internal::IndexBased, double>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8:   required from ‘struct Eigen::internal::evaluator<Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, 1, -1, true> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8:   required from ‘struct Eigen::internal::evaluator<const Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, 1, -1, true> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:41:   required from ‘struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, 1, -1, true> >, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8:   [ skipping 21 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::HouseholderSequence<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator<Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, -1, 1, true> >’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8:   required from ‘struct Eigen::internal::evaluator<const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, -1, 1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78:   required from ‘struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, 1, -1, true> >, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8:   required from ‘struct Eigen::internal::evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, 1, -1, true> >, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, -1, 1, true> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7:   required from ‘class Eigen::internal::redux_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, 1, -1, true> >, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, -1, 1, true> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:414:17:   required from ‘typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, 1, -1, true> >, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, -1, 1, true> >; typename Eigen::internal::traits<T>::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25:   [ skipping 18 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::HouseholderSequence<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > >, 2>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Transpose<const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Transpose<const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37:   required from ‘class Eigen::TransposeImpl<const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   required from ‘class Eigen::Transpose<const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/BlasUtil.h:506:13:   [ skipping 20 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::HouseholderSequence<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   56 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Transpose<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false> >, -1, 1, false>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Transpose<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false> >, -1, 1, false>, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Transpose<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false> >, -1, 1, false>, 3>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Block<Eigen::Transpose<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false> >, -1, 1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Block<Eigen::Transpose<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false> >, -1, 1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Block<Eigen::Transpose<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false> >, -1, 1, false>, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34:   [ skipping 24 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::HouseholderSequence<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Transpose<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Block<const Eigen::Transpose<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Block<const Eigen::Transpose<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:172:103:   required from ‘class Eigen::internal::BlockImpl_dense<const Eigen::Transpose<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false, false>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   required from ‘class Eigen::BlockImpl<const Eigen::Transpose<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81:   required from ‘class Eigen::Block<const Eigen::Transpose<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/VectorBlock.h:56:47:   [ skipping 20 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::HouseholderSequence<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<const Eigen::Transpose<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<const Eigen::Transpose<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<const Eigen::Transpose<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<const Eigen::Transpose<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<const Eigen::Transpose<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixVector.h:341:54:   required from ‘static void Eigen::internal::trmv_selector<Mode, 1>::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false> >; Rhs = Eigen::Transpose<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >; Dest = Eigen::Transpose<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false> >; int Mode = 6; typename Dest::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixVector.h:194:18:   [ skipping 18 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::HouseholderSequence<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:457:59:   required from ‘static void Eigen::internal::triangular_product_impl<Mode, LhsIsTriangular, Lhs, false, Rhs, false>::run(Dest&, const Lhs&, const Rhs&, const typename Dest::Scalar&) [with Dest = Eigen::Matrix<double, -1, -1>; int Mode = 6; bool LhsIsTriangular = true; Lhs = const Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >; Rhs = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; typename Dest::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:770:14:   [ skipping 18 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::HouseholderSequence<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >, -1, -1, false>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >, -1, -1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >, -1, -1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:172:103:   required from ‘class Eigen::internal::BlockImpl_dense<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >, -1, -1, false, false>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   required from ‘class Eigen::BlockImpl<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >, -1, -1, false, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81:   required from ‘class Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >, -1, -1, false>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:457:74:   [ skipping 19 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::HouseholderSequence<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >, -1, -1, false>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >, -1, -1, false>, 2>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Block<const Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >, -1, -1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Block<const Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >, -1, -1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Block<const Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >, -1, -1, false>, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7:   required from ‘class Eigen::internal::BlockImpl_dense<const Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >, -1, -1, false, true>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   [ skipping 21 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::HouseholderSequence<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Block<const Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >, -1, -1, false> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Block<const Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >, -1, -1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Block<const Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >, -1, -1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Block<const Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >, -1, -1, false>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Block<const Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >, -1, -1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:462:59:   required from ‘static void Eigen::internal::triangular_product_impl<Mode, LhsIsTriangular, Lhs, false, Rhs, false>::run(Dest&, const Lhs&, const Rhs&, const typename Dest::Scalar&) [with Dest = Eigen::Matrix<double, -1, -1>; int Mode = 6; bool LhsIsTriangular = true; Lhs = const Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >; Rhs = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; typename Dest::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:770:14:   [ skipping 18 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::HouseholderSequence<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, -1>, 1>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, -1>, 1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, -1>, 1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:120:7:   required from ‘class Eigen::internal::dense_product_base<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, -1>, 1, 8>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:152:7:   required from ‘class Eigen::ProductImpl<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, -1>, 1, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, -1>, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:462:68:   [ skipping 19 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:40:0:   required from ‘Scalar stan::optimization::BFGSUpdate_HInv<Scalar, DimAtCompile>::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0:   required from ‘int stan::optimization::BFGSMinimizer<FunctorType, QNUpdateType, Scalar, DimAtCompile>::step() [with FunctorType = stan::optimization::ModelAdaptor<model_shrinkage_namespace::model_shrinkage, false>; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0:   required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage; bool jacobian = false]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:15:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, true>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, true>, 2>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Block<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Block<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Block<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, true>, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7:   required from ‘class Eigen::internal::BlockImpl_dense<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, true, true>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   [ skipping 21 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:40:0:   required from ‘Scalar stan::optimization::BFGSUpdate_HInv<Scalar, DimAtCompile>::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0:   required from ‘int stan::optimization::BFGSMinimizer<FunctorType, QNUpdateType, Scalar, DimAtCompile>::step() [with FunctorType = stan::optimization::ModelAdaptor<model_shrinkage_namespace::model_shrinkage, false>; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0:   required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage; bool jacobian = false]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:15:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, 1, -1, false>, 1, -1, true>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, 1, -1, false>, 1, -1, true>, 2>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Block<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, 1, -1, false>, 1, -1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Block<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, 1, -1, false>, 1, -1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Block<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, 1, -1, false>, 1, -1, true>, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7:   required from ‘class Eigen::internal::BlockImpl_dense<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, 1, -1, false>, 1, -1, true, true>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   [ skipping 21 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:40:0:   required from ‘Scalar stan::optimization::BFGSUpdate_HInv<Scalar, DimAtCompile>::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0:   required from ‘int stan::optimization::BFGSMinimizer<FunctorType, QNUpdateType, Scalar, DimAtCompile>::step() [with FunctorType = stan::optimization::ModelAdaptor<model_shrinkage_namespace::model_shrinkage, false>; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0:   required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage; bool jacobian = false]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:15:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator<Eigen::Block<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, -1, 1, true> >’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:780:20:   required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, -1, 1, true>; SrcXprType = Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 16, Eigen::Stride<0, 0> > >; Functor = sub_assign_op<double, double>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31:   required from ‘static void Eigen::internal::Assignment<DstXprType, SrcXprType, Functor, Eigen::internal::Dense2Dense, Weak>::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, -1, 1, true>; SrcXprType = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 16, Eigen::Stride<0, 0> > >; Functor = Eigen::internal::sub_assign_op<double, double>; Weak = void]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, -1, 1, true>; Src = Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 16, Eigen::Stride<0, 0> > >; Func = sub_assign_op<double, double>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing<Src>::value), void*>::type) [with Dst = Eigen::Block<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, -1, 1, true>; Src = Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 16, Eigen::Stride<0, 0> > >; Func = sub_assign_op<double, double>; typename enable_if<(! evaluator_assume_aliasing<Src>::value), void*>::type = void*; typename evaluator_traits<SrcXprType>::Shape = Eigen::DenseShape]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:164:18:   required from ‘Derived& Eigen::MatrixBase<Derived>::operator-=(const Eigen::MatrixBase<OtherDerived>&) [with OtherDerived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 16, Eigen::Stride<0, 0> > >; Derived = Eigen::Block<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, -1, 1, true>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:305:153:   [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::HouseholderSequence<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
 1071 |     PacketAlignment = unpacket_traits<PacketScalar>::alignment,
      |                                                      ^~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::InnerStride<> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::InnerStride<> >, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::InnerStride<> >, 3>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::InnerStride<> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::InnerStride<> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::InnerStride<> >, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34:   [ skipping 22 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::HouseholderSequence<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   56 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false>, 2>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false>, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7:   required from ‘class Eigen::internal::BlockImpl_dense<const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false, true>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   [ skipping 23 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::HouseholderSequence<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false> >, 2>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Transpose<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Transpose<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37:   required from ‘class Eigen::TransposeImpl<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   required from ‘class Eigen::Transpose<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixVector.h:137:106:   [ skipping 20 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::HouseholderSequence<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Block<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false>, const Eigen::Transpose<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Block<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false>, const Eigen::Transpose<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Block<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false>, const Eigen::Transpose<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::Block<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false>, const Eigen::Transpose<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Block<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false>, const Eigen::Transpose<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixVector.h:137:77:   required from ‘static void Eigen::internal::triangular_matrix_vector_product<Index, Mode, LhsScalar, ConjLhs, RhsScalar, ConjRhs, 1, Version>::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, const ResScalar&) [with Index = long int; int Mode = 6; LhsScalar = double; bool ConjLhs = false; RhsScalar = double; bool ConjRhs = false; int Version = 0; ResScalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixVector.h:332:12:   [ skipping 19 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::HouseholderSequence<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 8, 8, 1, 8, 8>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 8, 8, 1, 8, 8>, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 8, 8, 1, 8, 8>, 3>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Matrix<double, 8, 8, 1, 8, 8> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Matrix<double, 8, 8, 1, 8, 8> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<double, 8, 8, 1, 8, 8> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   [ skipping 21 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::HouseholderSequence<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Diagonal<Eigen::Matrix<double, 8, 8, 1, 8, 8>, 0>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Diagonal<Eigen::Matrix<double, 8, 8, 1, 8, 8>, 0>, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Diagonal<Eigen::Matrix<double, 8, 8, 1, 8, 8>, 0>, 3>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Diagonal<Eigen::Matrix<double, 8, 8, 1, 8, 8>, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Diagonal<Eigen::Matrix<double, 8, 8, 1, 8, 8>, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Diagonal.h:63:53:   required from ‘class Eigen::Diagonal<Eigen::Matrix<double, 8, 8, 1, 8, 8>, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:153:32:   [ skipping 20 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::HouseholderSequence<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase<Derived>&) [with Derived = Eigen::CwiseBinaryOp<scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, 1, -1, true> >, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, -1, 1, true> >; Eigen::Index = long int]’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63:   required from ‘static Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::Scalar Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, 1, -1, true> >, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, -1, 1, true> >; Func = Eigen::internal::scalar_sum_op<double, double>; Evaluator = Eigen::internal::redux_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, 1, -1, true> >, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, -1, 1, true> > >; Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56:   required from ‘typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, 1, -1, true> >, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, -1, 1, true> >; typename Eigen::internal::traits<T>::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25:   required from ‘typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::sum() const [with Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, 1, -1, true> >, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, -1, 1, true> >; typename Eigen::internal::traits<T>::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:63:   required from ‘static Eigen::internal::dot_nocheck<T, U, true>::ResScalar Eigen::internal::dot_nocheck<T, U, true>::run(const Eigen::MatrixBase<Derived>&, const Eigen::MatrixBase<U>&) [with T = Eigen::Block<const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, 1, -1, true>; U = Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, -1, 1, true>; ResScalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58:   required from ‘typename Eigen::ScalarBinaryOpTraits<typename Eigen::internal::traits<T>::Scalar, typename Eigen::internal::traits<OtherDerived>::Scalar>::ReturnType Eigen::MatrixBase<Derived>::dot(const Eigen::MatrixBase<OtherDerived>&) const [with OtherDerived = Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, -1, 1, true>; Derived = Eigen::Block<const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, 1, -1, true>; typename Eigen::ScalarBinaryOpTraits<typename Eigen::internal::traits<T>::Scalar, typename Eigen::internal::traits<OtherDerived>::Scalar>::ReturnType = double; typename Eigen::internal::traits<T>::Scalar = double; typename Eigen::internal::traits<OtherDerived>::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:380:62:   [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::HouseholderSequence<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
  654 |   return internal::first_aligned<int(unpacket_traits<DefaultPacketType>::alignment),Derived>(m);
      |                                                                          ^~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, 1, -1, false> >, const Eigen::Block<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, true> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, 1, -1, false> >, const Eigen::Block<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, true> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, 1, -1, false> >, const Eigen::Block<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, true> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, 1, -1, false> >, const Eigen::Block<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, true>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, 1, -1, false> >, const Eigen::Block<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:56:   required from ‘static Eigen::internal::dot_nocheck<T, U, true>::ResScalar Eigen::internal::dot_nocheck<T, U, true>::run(const Eigen::MatrixBase<Derived>&, const Eigen::MatrixBase<U>&) [with T = Eigen::Block<const Eigen::Matrix<double, -1, -1>, 1, -1, false>; U = Eigen::Block<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, true>; ResScalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58:   [ skipping 20 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:40:0:   required from ‘Scalar stan::optimization::BFGSUpdate_HInv<Scalar, DimAtCompile>::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0:   required from ‘int stan::optimization::BFGSMinimizer<FunctorType, QNUpdateType, Scalar, DimAtCompile>::step() [with FunctorType = stan::optimization::ModelAdaptor<model_shrinkage_namespace::model_shrinkage, false>; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0:   required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage; bool jacobian = false]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:15:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   56 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, 1, -1, false>, 1, -1, true> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, 1, -1, false>, 1, -1, true> >, 2>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, 1, -1, false>, 1, -1, true> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, 1, -1, false>, 1, -1, true> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37:   required from ‘class Eigen::TransposeImpl<const Eigen::Block<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, 1, -1, false>, 1, -1, true>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   required from ‘class Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, 1, -1, false>, 1, -1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:23:   [ skipping 21 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:40:0:   required from ‘Scalar stan::optimization::BFGSUpdate_HInv<Scalar, DimAtCompile>::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0:   required from ‘int stan::optimization::BFGSMinimizer<FunctorType, QNUpdateType, Scalar, DimAtCompile>::step() [with FunctorType = stan::optimization::ModelAdaptor<model_shrinkage_namespace::model_shrinkage, false>; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0:   required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage; bool jacobian = false]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:15:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, 1, -1, false>, 1, -1, true> >, const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, true> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, 1, -1, false>, 1, -1, true> >, const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, true> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, 1, -1, false>, 1, -1, true> >, const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, true> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, 1, -1, false>, 1, -1, true> >, const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, true>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, 1, -1, false>, 1, -1, true> >, const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:56:   required from ‘static Eigen::internal::dot_nocheck<T, U, true>::ResScalar Eigen::internal::dot_nocheck<T, U, true>::run(const Eigen::MatrixBase<Derived>&, const Eigen::MatrixBase<U>&) [with T = Eigen::Block<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, 1, -1, false>, 1, -1, true>; U = Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, true>; ResScalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58:   [ skipping 20 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:40:0:   required from ‘Scalar stan::optimization::BFGSUpdate_HInv<Scalar, DimAtCompile>::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0:   required from ‘int stan::optimization::BFGSMinimizer<FunctorType, QNUpdateType, Scalar, DimAtCompile>::step() [with FunctorType = stan::optimization::ModelAdaptor<model_shrinkage_namespace::model_shrinkage, false>; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0:   required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage; bool jacobian = false]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:15:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator<Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false> >’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8:   required from ‘struct Eigen::internal::evaluator<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:311:41:   required from ‘struct Eigen::internal::unary_evaluator<Eigen::Transpose<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false> >, Eigen::internal::IndexBased, double>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8:   required from ‘struct Eigen::internal::evaluator<Eigen::Transpose<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8:   required from ‘struct Eigen::internal::evaluator<const Eigen::Transpose<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78:   required from ‘struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Block<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false>, const Eigen::Transpose<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false> > >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8:   [ skipping 24 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::HouseholderSequence<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
 1071 |     PacketAlignment = unpacket_traits<PacketScalar>::alignment,
      |                                                      ^~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 8, 8, 1, 8, 8> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 8, 8, 1, 8, 8> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 8, 8, 1, 8, 8> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7:   required from ‘class Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 8, 8, 1, 8, 8> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:347:30:   required from ‘Derived& Eigen::DenseBase<Derived>::setConstant(const Scalar&) [with Derived = Eigen::Matrix<double, 8, 8, 1, 8, 8>; Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:548:10:   required from ‘Derived& Eigen::DenseBase<Derived>::setZero() [with Derived = Eigen::Matrix<double, 8, 8, 1, 8, 8>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:151:29:   [ skipping 20 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::HouseholderSequence<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   56 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator<Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, -1, -1, false> >’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:774:20:   required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Block<const Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, -1, -1, false>; Functor = sub_assign_op<double, double>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31:   required from ‘static void Eigen::internal::Assignment<DstXprType, SrcXprType, Functor, Eigen::internal::Dense2Dense, Weak>::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, -1, -1, false>; Functor = Eigen::internal::sub_assign_op<double, double>; Weak = void]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>; Src = Eigen::Block<const Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, -1, -1, false>; Func = sub_assign_op<double, double>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing<Src>::value), void*>::type) [with Dst = Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>; Src = Eigen::Block<const Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, -1, -1, false>; Func = sub_assign_op<double, double>; typename enable_if<(! evaluator_assume_aliasing<Src>::value), void*>::type = void*; typename evaluator_traits<SrcXprType>::Shape = Eigen::DenseShape]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:164:18:   required from ‘Derived& Eigen::MatrixBase<Derived>::operator-=(const Eigen::MatrixBase<OtherDerived>&) [with OtherDerived = Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, -1, -1, false>; Derived = Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:457:31:   [ skipping 17 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::HouseholderSequence<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
 1071 |     PacketAlignment = unpacket_traits<PacketScalar>::alignment,
      |                                                      ^~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator<Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, true> >’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8:   required from ‘struct Eigen::internal::evaluator<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78:   required from ‘struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8:   required from ‘struct Eigen::internal::evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, true> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:774:20:   required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, true>; SrcXprType = Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, true> >; Functor = sub_assign_op<double, double>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31:   required from ‘static void Eigen::internal::Assignment<DstXprType, SrcXprType, Functor, Eigen::internal::Dense2Dense, Weak>::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, true>; SrcXprType = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, true> >; Functor = Eigen::internal::sub_assign_op<double, double>; Weak = void]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49:   [ skipping 20 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::HouseholderSequence<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, true> >’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:780:20:   required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, true>; SrcXprType = Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, true> >; Functor = sub_assign_op<double, double>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31:   required from ‘static void Eigen::internal::Assignment<DstXprType, SrcXprType, Functor, Eigen::internal::Dense2Dense, Weak>::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, true>; SrcXprType = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, true> >; Functor = Eigen::internal::sub_assign_op<double, double>; Weak = void]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, true>; Src = Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, true> >; Func = sub_assign_op<double, double>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing<Src>::value), void*>::type) [with Dst = Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, true>; Src = Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, true> >; Func = sub_assign_op<double, double>; typename enable_if<(! evaluator_assume_aliasing<Src>::value), void*>::type = void*; typename evaluator_traits<SrcXprType>::Shape = Eigen::DenseShape]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:164:18:   required from ‘Derived& Eigen::MatrixBase<Derived>::operator-=(const Eigen::MatrixBase<OtherDerived>&) [with OtherDerived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, true> >; Derived = Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, true>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:462:32:   [ skipping 17 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::HouseholderSequence<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, -1, -1, false>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, -1, -1, false>, 2>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, -1, -1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, -1, -1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, -1, -1, false>, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7:   required from ‘class Eigen::internal::BlockImpl_dense<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, -1, -1, false, true>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   [ skipping 25 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::HouseholderSequence<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   56 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, -1, -1, false> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, -1, -1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, -1, -1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, -1, -1, false>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, -1, -1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:462:59:   required from ‘static void Eigen::internal::triangular_product_impl<Mode, LhsIsTriangular, Lhs, false, Rhs, false>::run(Dest&, const Lhs&, const Rhs&, const typename Dest::Scalar&) [with Dest = Eigen::Matrix<double, -1, -1>; int Mode = 2; bool LhsIsTriangular = true; Lhs = Eigen::Matrix<double, -1, -1, 1, -1, -1>; Rhs = Eigen::Matrix<double, -1, -1>; typename Dest::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:770:14:   [ skipping 22 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::HouseholderSequence<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, -1, -1, true>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, -1, -1, true>, 2>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, -1, -1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, -1, -1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, -1, -1, true>, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7:   required from ‘class Eigen::internal::BlockImpl_dense<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, -1, -1, true, true>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   [ skipping 25 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::HouseholderSequence<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, -1, -1, true> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, -1, -1, true> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, -1, -1, true> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, -1, -1, true>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, -1, -1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:462:59:   required from ‘static void Eigen::internal::triangular_product_impl<Mode, LhsIsTriangular, Lhs, false, Rhs, false>::run(Dest&, const Lhs&, const Rhs&, const typename Dest::Scalar&) [with Dest = Eigen::Matrix<double, -1, -1>; int Mode = 1; bool LhsIsTriangular = true; Lhs = const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >; Rhs = Eigen::Matrix<double, -1, -1>; typename Dest::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:770:14:   [ skipping 22 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::HouseholderSequence<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator<Eigen::Block<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, true> >’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8:   required from ‘struct Eigen::internal::evaluator<const Eigen::Block<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78:   required from ‘struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, 1, -1, false> >, const Eigen::Block<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8:   required from ‘struct Eigen::internal::evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, 1, -1, false> >, const Eigen::Block<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, true> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7:   required from ‘class Eigen::internal::redux_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, 1, -1, false> >, const Eigen::Block<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, true> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:414:17:   required from ‘typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, 1, -1, false> >, const Eigen::Block<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, true> >; typename Eigen::internal::traits<T>::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25:   [ skipping 22 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:40:0:   required from ‘Scalar stan::optimization::BFGSUpdate_HInv<Scalar, DimAtCompile>::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0:   required from ‘int stan::optimization::BFGSMinimizer<FunctorType, QNUpdateType, Scalar, DimAtCompile>::step() [with FunctorType = stan::optimization::ModelAdaptor<model_shrinkage_namespace::model_shrinkage, false>; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0:   required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage; bool jacobian = false]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:15:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
 1071 |     PacketAlignment = unpacket_traits<PacketScalar>::alignment,
      |                                                      ^~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator<Eigen::Block<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, 1, -1, false>, 1, -1, true> >’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8:   required from ‘struct Eigen::internal::evaluator<const Eigen::Block<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, 1, -1, false>, 1, -1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:311:41:   required from ‘struct Eigen::internal::unary_evaluator<Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, 1, -1, false>, 1, -1, true> >, Eigen::internal::IndexBased, double>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8:   required from ‘struct Eigen::internal::evaluator<Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, 1, -1, false>, 1, -1, true> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8:   required from ‘struct Eigen::internal::evaluator<const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, 1, -1, false>, 1, -1, true> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:41:   required from ‘struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, 1, -1, false>, 1, -1, true> >, const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8:   [ skipping 25 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:40:0:   required from ‘Scalar stan::optimization::BFGSUpdate_HInv<Scalar, DimAtCompile>::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0:   required from ‘int stan::optimization::BFGSMinimizer<FunctorType, QNUpdateType, Scalar, DimAtCompile>::step() [with FunctorType = stan::optimization::ModelAdaptor<model_shrinkage_namespace::model_shrinkage, false>; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0:   required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage; bool jacobian = false]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:15:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase<Derived>&) [with Derived = Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::Block<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false>, const Eigen::Transpose<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false> > >; Eigen::Index = long int]’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63:   required from ‘static Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::Scalar Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Block<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false>, const Eigen::Transpose<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false> > >; Func = Eigen::internal::scalar_sum_op<double, double>; Evaluator = Eigen::internal::redux_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Block<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false>, const Eigen::Transpose<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false> > > >; Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56:   required from ‘typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Block<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false>, const Eigen::Transpose<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false> > >; typename Eigen::internal::traits<T>::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25:   required from ‘typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::sum() const [with Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Block<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false>, const Eigen::Transpose<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false> > >; typename Eigen::internal::traits<T>::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixVector.h:137:114:   required from ‘static void Eigen::internal::triangular_matrix_vector_product<Index, Mode, LhsScalar, ConjLhs, RhsScalar, ConjRhs, 1, Version>::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, const ResScalar&) [with Index = long int; int Mode = 6; LhsScalar = double; bool ConjLhs = false; RhsScalar = double; bool ConjRhs = false; int Version = 0; ResScalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixVector.h:332:12:   required from ‘static void Eigen::internal::trmv_selector<Mode, 1>::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false> >; Rhs = Eigen::Transpose<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >; Dest = Eigen::Transpose<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false> >; int Mode = 6; typename Dest::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixVector.h:194:18:   [ skipping 18 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::HouseholderSequence<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
  654 |   return internal::first_aligned<int(unpacket_traits<DefaultPacketType>::alignment),Derived>(m);
      |                                                                          ^~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator<Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true> >’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8:   required from ‘struct Eigen::internal::evaluator<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1043:41:   required from ‘struct Eigen::internal::evaluator<Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8:   required from ‘struct Eigen::internal::evaluator<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:311:41:   required from ‘struct Eigen::internal::unary_evaluator<Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> >, Eigen::internal::IndexBased, double>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8:   required from ‘struct Eigen::internal::evaluator<Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8:   [ skipping 37 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::HouseholderSequence<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
 1071 |     PacketAlignment = unpacket_traits<PacketScalar>::alignment,
      |                                                      ^~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator<Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> >’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8:   required from ‘struct Eigen::internal::evaluator<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:311:41:   required from ‘struct Eigen::internal::unary_evaluator<Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> >, Eigen::internal::IndexBased, double>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8:   required from ‘struct Eigen::internal::evaluator<Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8:   required from ‘struct Eigen::internal::evaluator<const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78:   required from ‘struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8:   [ skipping 35 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::HouseholderSequence<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator<Eigen::Block<const Eigen::Transpose<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false> >’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8:   required from ‘struct Eigen::internal::evaluator<const Eigen::Block<const Eigen::Transpose<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78:   required from ‘struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<const Eigen::Transpose<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8:   required from ‘struct Eigen::internal::evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<const Eigen::Transpose<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:774:20:   required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block<Eigen::Transpose<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false> >, -1, 1, false>; SrcXprType = Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<const Eigen::Transpose<const Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false> >; Functor = sub_assign_op<double, double>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31:   required from ‘static void Eigen::internal::Assignment<DstXprType, SrcXprType, Functor, Eigen::internal::Dense2Dense, Weak>::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block<Eigen::Transpose<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false> >, -1, 1, false>; SrcXprType = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<const Eigen::Transpose<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false> >; Functor = Eigen::internal::sub_assign_op<double, double>; Weak = void]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49:   [ skipping 22 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::HouseholderSequence<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator<Eigen::Block<Eigen::Transpose<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false> >, -1, 1, false> >’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:780:20:   required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block<Eigen::Transpose<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false> >, -1, 1, false>; SrcXprType = Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<const Eigen::Transpose<const Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false> >; Functor = sub_assign_op<double, double>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31:   required from ‘static void Eigen::internal::Assignment<DstXprType, SrcXprType, Functor, Eigen::internal::Dense2Dense, Weak>::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block<Eigen::Transpose<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false> >, -1, 1, false>; SrcXprType = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<const Eigen::Transpose<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false> >; Functor = Eigen::internal::sub_assign_op<double, double>; Weak = void]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block<Eigen::Transpose<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false> >, -1, 1, false>; Src = Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<const Eigen::Transpose<const Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false> >; Func = sub_assign_op<double, double>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing<Src>::value), void*>::type) [with Dst = Eigen::Block<Eigen::Transpose<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false> >, -1, 1, false>; Src = Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<const Eigen::Transpose<const Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false> >; Func = sub_assign_op<double, double>; typename enable_if<(! evaluator_assume_aliasing<Src>::value), void*>::type = void*; typename evaluator_traits<SrcXprType>::Shape = Eigen::DenseShape]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:164:18:   required from ‘Derived& Eigen::MatrixBase<Derived>::operator-=(const Eigen::MatrixBase<OtherDerived>&) [with OtherDerived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<const Eigen::Transpose<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false> >; Derived = Eigen::Block<Eigen::Transpose<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false> >, -1, 1, false>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixVector.h:341:27:   [ skipping 19 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::HouseholderSequence<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator<Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >, -1, -1, false> >’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:774:20:   required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; SrcXprType = Eigen::Block<const Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >, -1, -1, false>; Functor = sub_assign_op<double, double>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31:   required from ‘static void Eigen::internal::Assignment<DstXprType, SrcXprType, Functor, Eigen::internal::Dense2Dense, Weak>::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; SrcXprType = Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >, -1, -1, false>; Functor = Eigen::internal::sub_assign_op<double, double>; Weak = void]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Src = Eigen::Block<const Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >, -1, -1, false>; Func = sub_assign_op<double, double>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing<Src>::value), void*>::type) [with Dst = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Src = Eigen::Block<const Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >, -1, -1, false>; Func = sub_assign_op<double, double>; typename enable_if<(! evaluator_assume_aliasing<Src>::value), void*>::type = void*; typename evaluator_traits<SrcXprType>::Shape = Eigen::DenseShape]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:164:18:   required from ‘Derived& Eigen::MatrixBase<Derived>::operator-=(const Eigen::MatrixBase<OtherDerived>&) [with OtherDerived = Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >, -1, -1, false>; Derived = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:457:31:   [ skipping 19 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::HouseholderSequence<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator<Eigen::Block<const Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >, -1, -1, false> >’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8:   required from ‘struct Eigen::internal::evaluator<const Eigen::Block<const Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >, -1, -1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78:   required from ‘struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Block<const Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >, -1, -1, false> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8:   required from ‘struct Eigen::internal::evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Block<const Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >, -1, -1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:774:20:   required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true>; SrcXprType = Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Block<const Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >, -1, -1, false> >; Functor = sub_assign_op<double, double>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31:   required from ‘static void Eigen::internal::Assignment<DstXprType, SrcXprType, Functor, Eigen::internal::Dense2Dense, Weak>::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true>; SrcXprType = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Block<const Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >, -1, -1, false> >; Functor = Eigen::internal::sub_assign_op<double, double>; Weak = void]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49:   [ skipping 22 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::HouseholderSequence<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, 1, -1, false> >, const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, true> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, 1, -1, false> >, const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, true> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, 1, -1, false> >, const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, true> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, 1, -1, false> >, const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, true>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, 1, -1, false> >, const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:606:52:   required from ‘const Eigen::internal::product_evaluator<Eigen::Product<Lhs, Rhs, 1>, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::CoeffReturnType Eigen::internal::product_evaluator<Eigen::Product<Lhs, Rhs, 1>, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::coeff(Eigen::Index, Eigen::Index) const [with Lhs = Eigen::Matrix<double, -1, -1>; Rhs = Eigen::Matrix<double, -1, -1>; int ProductTag = 8; typename Eigen::internal::traits<typename Eigen::Product<Lhs, Rhs, 1>::Lhs>::Scalar = double; typename Eigen::Product<Lhs, Rhs, 1>::Lhs = Eigen::Matrix<double, -1, -1>; typename Eigen::internal::traits<typename Eigen::Product<Lhs, Rhs, 1>::Rhs>::Scalar = double; typename Eigen::Product<Lhs, Rhs, 1>::Rhs = Eigen::Matrix<double, -1, -1>; CoeffReturnType = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:654:63:   [ skipping 23 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:40:0:   required from ‘Scalar stan::optimization::BFGSUpdate_HInv<Scalar, DimAtCompile>::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; VectorT = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/bfgs.hpp:246:0:   required from ‘int stan::optimization::BFGSMinimizer<FunctorType, QNUpdateType, Scalar, DimAtCompile>::step() [with FunctorType = stan::optimization::ModelAdaptor<model_shrinkage_namespace::model_shrinkage, false>; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:117:0:   required from ‘int stan::services::optimize::bfgs(Model&, const stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_shrinkage_namespace::model_shrinkage; bool jacobian = false]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:517:0:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/rstan/include/rstan/stan_fit.hpp:1215:0:   required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_shrinkage_namespace::model_shrinkage; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >; SEXP = SEXPREC*]’
stanExports_shrinkage.cc:15:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   56 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator<Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, -1, -1, false> >’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8:   required from ‘struct Eigen::internal::evaluator<const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, -1, -1, false> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78:   required from ‘struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, -1, -1, false> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8:   required from ‘struct Eigen::internal::evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, -1, -1, false> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:774:20:   required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true>; SrcXprType = Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, -1, -1, false> >; Functor = sub_assign_op<double, double>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31:   required from ‘static void Eigen::internal::Assignment<DstXprType, SrcXprType, Functor, Eigen::internal::Dense2Dense, Weak>::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true>; SrcXprType = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, -1, -1, false> >; Functor = Eigen::internal::sub_assign_op<double, double>; Weak = void]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49:   [ skipping 26 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::HouseholderSequence<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
 1071 |     PacketAlignment = unpacket_traits<PacketScalar>::alignment,
      |                                                      ^~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator<Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, -1, -1, true> >’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8:   required from ‘struct Eigen::internal::evaluator<const Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, -1, -1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78:   required from ‘struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, -1, -1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8:   required from ‘struct Eigen::internal::evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, -1, -1, true> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:774:20:   required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true>; SrcXprType = Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, -1, -1, true> >; Functor = sub_assign_op<double, double>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31:   required from ‘static void Eigen::internal::Assignment<DstXprType, SrcXprType, Functor, Eigen::internal::Dense2Dense, Weak>::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true>; SrcXprType = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, -1, -1, true> >; Functor = Eigen::internal::sub_assign_op<double, double>; Weak = void]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49:   [ skipping 26 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::HouseholderSequence<Eigen::Matrix<double, -1, -1>, Eigen::Matrix<double, -1, 1>, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:453:11:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector<MatrixType, Size, IsComplex>::run(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; MatrixType = Eigen::Matrix<double, -1, -1>; int Size = -1; bool IsComplex = false; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:434:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, CoeffVectorType&, bool) [with MatrixType = Eigen::Matrix<double, -1, -1>; DiagonalType = Eigen::Matrix<double, -1, 1>; SubDiagonalType = Eigen::Matrix<double, -1, 1>; CoeffVectorType = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:458:39:   required from ‘Eigen::SelfAdjointEigenSolver<MatrixType>& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:181:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase<OtherDerived>&, int) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/optimization/newton.hpp:19:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryView<Eigen::ArrayBase<Eigen::Map<Eigen::Array<stan::math::var_value<double>, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Array<stan::math::var_value<double>, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryView<Eigen::ArrayBase<Eigen::Map<Eigen::Array<stan::math::var_value<double>, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Array<stan::math::var_value<double>, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryView<Eigen::ArrayBase<Eigen::Map<Eigen::Array<stan::math::var_value<double>, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Array<stan::math::var_value<double>, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >, 3>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryView<Eigen::ArrayBase<Eigen::Map<Eigen::Array<stan::math::var_value<double>, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Array<stan::math::var_value<double>, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseUnaryView<Eigen::ArrayBase<Eigen::Map<Eigen::Array<stan::math::var_value<double>, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Array<stan::math::var_value<double>, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:103:7:   required from ‘class Eigen::CwiseUnaryViewImpl<Eigen::ArrayBase<Eigen::Map<Eigen::Array<stan::math::var_value<double>, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Array<stan::math::var_value<double>, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:58:7:   required from ‘class Eigen::CwiseUnaryView<Eigen::ArrayBase<Eigen::Map<Eigen::Array<stan::math::var_value<double>, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >::adj_Op, Eigen::Map<Eigen::Array<stan::math::var_value<double>, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/fun/sum.hpp:32:18:   required from ‘stan::math::sum<arena_allocator<var_value<double> > >(const std::vector<var_value<double>, arena_allocator<var_value<double> > >&)::<lambda(auto:446&)> mutable [with auto:446 = stan::math::internal::callback_vari<double, stan::math::sum<arena_allocator<var_value<double> > >(const std::vector<var_value<double>, arena_allocator<var_value<double> > >&)::<lambda(auto:446&)> >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:21:43:   required from ‘void stan::math::internal::callback_vari<T, F>::chain() [with T = double; F = stan::math::sum<arena_allocator<var_value<double> > >(const std::vector<var_value<double>, arena_allocator<var_value<double> > >&)::<lambda(auto:446&)>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/stan/math/rev/core/callback_vari.hpp:21:15:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   56 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/nuts/base_nuts.hpp:175:0:   required from ‘stan::mcmc::sample stan::mcmc::base_nuts<Model, Hamiltonian, Integrator, BaseRNG>::transition(stan::mcmc::sample&, stan::callbacks::logger&) [with Model = model_shrinkage_namespace::model_shrinkage; Hamiltonian = stan::mcmc::diag_e_metric; Integrator = stan::mcmc::expl_leapfrog; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/nuts/base_nuts.hpp:78:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:37:44:   required from ‘static Eigen::internal::dot_nocheck<T, U, NeedToTranspose>::ResScalar Eigen::internal::dot_nocheck<T, U, NeedToTranspose>::run(const Eigen::MatrixBase<Derived>&, const Eigen::MatrixBase<U>&) [with T = Eigen::Matrix<double, -1, 1>; U = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> >; bool NeedToTranspose = false; ResScalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58:   required from ‘typename Eigen::ScalarBinaryOpTraits<typename Eigen::internal::traits<T>::Scalar, typename Eigen::internal::traits<OtherDerived>::Scalar>::ReturnType Eigen::MatrixBase<Derived>::dot(const Eigen::MatrixBase<OtherDerived>&) const [with OtherDerived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> >; Derived = Eigen::Matrix<double, -1, 1>; typename Eigen::ScalarBinaryOpTraits<typename Eigen::internal::traits<T>::Scalar, typename Eigen::internal::traits<OtherDerived>::Scalar>::ReturnType = double; typename Eigen::internal::traits<T>::Scalar = double; typename Eigen::internal::traits<OtherDerived>::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/diag_e_metric.hpp:21:0:   required from ‘double stan::mcmc::diag_e_metric<Model, BaseRNG>::T(stan::mcmc::diag_e_point&) [with Model = model_shrinkage_namespace::model_shrinkage; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/diag_e_metric.hpp:20:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Transpose<const Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Transpose<const Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37:   required from ‘class Eigen::TransposeImpl<const Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   required from ‘class Eigen::Transpose<const Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:251:39:   required from ‘static void Eigen::internal::generic_product_impl<Lhs, Rhs, Eigen::DenseShape, Eigen::DenseShape, 6>::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix<double, 1, 1, 0, 1, 1>; Lhs = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>; Rhs = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:124:75:   required from ‘Eigen::internal::product_evaluator<Eigen::Product<Lhs, Rhs, Option>, ProductTag, LhsShape, RhsShape>::product_evaluator(const XprType&) [with Lhs = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>; Rhs = Eigen::Matrix<double, -1, 1>; int Options = 0; int ProductTag = 6; LhsShape = Eigen::DenseShape; RhsShape = Eigen::DenseShape; typename Eigen::internal::traits<typename Eigen::Product<Lhs, Rhs, Option>::Lhs>::Scalar = double; typename Eigen::Product<Lhs, Rhs, Option>::Lhs = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>; typename Eigen::internal::traits<typename Eigen::Product<Lhs, Rhs, Option>::Rhs>::Scalar = double; typename Eigen::Product<Lhs, Rhs, Option>::Rhs = Eigen::Matrix<double, -1, 1>; XprType = Eigen::Product<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>, Eigen::Matrix<double, -1, 1>, 0>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:35:90:   required from ‘Eigen::internal::evaluator<Eigen::Product<Lhs, Rhs, Option> >::evaluator(const XprType&) [with Lhs = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>; Rhs = Eigen::Matrix<double, -1, 1>; int Options = 0; XprType = Eigen::Product<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>, Eigen::Matrix<double, -1, 1>, 0>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:137:22:   required from ‘Eigen::internal::dense_product_base<Lhs, Rhs, Option, 6>::operator const Scalar() const [with Lhs = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>; Rhs = Eigen::Matrix<double, -1, 1>; int Option = 0; Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0:   required from ‘double stan::mcmc::dense_e_metric<Model, BaseRNG>::T(stan::mcmc::dense_e_point&) [with Model = model_shrinkage_namespace::model_shrinkage; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Transpose<const Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0> >, const Eigen::Matrix<double, -1, 1> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Transpose<const Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0> >, const Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Transpose<const Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0> >, const Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::Transpose<const Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0> >, const Eigen::Matrix<double, -1, 1>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Transpose<const Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0> >, const Eigen::Matrix<double, -1, 1> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:251:54:   required from ‘static void Eigen::internal::generic_product_impl<Lhs, Rhs, Eigen::DenseShape, Eigen::DenseShape, 6>::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix<double, 1, 1, 0, 1, 1>; Lhs = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>; Rhs = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:124:75:   required from ‘Eigen::internal::product_evaluator<Eigen::Product<Lhs, Rhs, Option>, ProductTag, LhsShape, RhsShape>::product_evaluator(const XprType&) [with Lhs = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>; Rhs = Eigen::Matrix<double, -1, 1>; int Options = 0; int ProductTag = 6; LhsShape = Eigen::DenseShape; RhsShape = Eigen::DenseShape; typename Eigen::internal::traits<typename Eigen::Product<Lhs, Rhs, Option>::Lhs>::Scalar = double; typename Eigen::Product<Lhs, Rhs, Option>::Lhs = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>; typename Eigen::internal::traits<typename Eigen::Product<Lhs, Rhs, Option>::Rhs>::Scalar = double; typename Eigen::Product<Lhs, Rhs, Option>::Rhs = Eigen::Matrix<double, -1, 1>; XprType = Eigen::Product<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>, Eigen::Matrix<double, -1, 1>, 0>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:35:90:   required from ‘Eigen::internal::evaluator<Eigen::Product<Lhs, Rhs, Option> >::evaluator(const XprType&) [with Lhs = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>; Rhs = Eigen::Matrix<double, -1, 1>; int Options = 0; XprType = Eigen::Product<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>, Eigen::Matrix<double, -1, 1>, 0>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:137:22:   required from ‘Eigen::internal::dense_product_base<Lhs, Rhs, Option, 6>::operator const Scalar() const [with Lhs = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>; Rhs = Eigen::Matrix<double, -1, 1>; int Option = 0; Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0:   required from ‘double stan::mcmc::dense_e_metric<Model, BaseRNG>::T(stan::mcmc::dense_e_point&) [with Model = model_shrinkage_namespace::model_shrinkage; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase<Derived>&) [with Derived = Eigen::CwiseBinaryOp<scalar_conj_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> > >; Eigen::Index = long int]’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63:   required from ‘static Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::Scalar Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> > >; Func = Eigen::internal::scalar_sum_op<double, double>; Evaluator = Eigen::internal::redux_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> > > >; Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56:   required from ‘typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> > >; typename Eigen::internal::traits<T>::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25:   required from ‘typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::sum() const [with Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> > >; typename Eigen::internal::traits<T>::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:37:51:   required from ‘static Eigen::internal::dot_nocheck<T, U, NeedToTranspose>::ResScalar Eigen::internal::dot_nocheck<T, U, NeedToTranspose>::run(const Eigen::MatrixBase<Derived>&, const Eigen::MatrixBase<U>&) [with T = Eigen::Matrix<double, -1, 1>; U = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> >; bool NeedToTranspose = false; ResScalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58:   required from ‘typename Eigen::ScalarBinaryOpTraits<typename Eigen::internal::traits<T>::Scalar, typename Eigen::internal::traits<OtherDerived>::Scalar>::ReturnType Eigen::MatrixBase<Derived>::dot(const Eigen::MatrixBase<OtherDerived>&) const [with OtherDerived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Matrix<double, -1, 1> >; Derived = Eigen::Matrix<double, -1, 1>; typename Eigen::ScalarBinaryOpTraits<typename Eigen::internal::traits<T>::Scalar, typename Eigen::internal::traits<OtherDerived>::Scalar>::ReturnType = double; typename Eigen::internal::traits<T>::Scalar = double; typename Eigen::internal::traits<OtherDerived>::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/diag_e_metric.hpp:21:0:   required from ‘double stan::mcmc::diag_e_metric<Model, BaseRNG>::T(stan::mcmc::diag_e_point&) [with Model = model_shrinkage_namespace::model_shrinkage; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/diag_e_metric.hpp:20:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
  654 |   return internal::first_aligned<int(unpacket_traits<DefaultPacketType>::alignment),Derived>(m);
      |                                                                          ^~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase<Derived>&) [with Derived = Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::Transpose<const Eigen::Product<Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0> >, const Eigen::Matrix<double, -1, 1> >; Eigen::Index = long int]’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63:   required from ‘static Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::Scalar Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Transpose<const Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0> >, const Eigen::Matrix<double, -1, 1> >; Func = Eigen::internal::scalar_sum_op<double, double>; Evaluator = Eigen::internal::redux_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Transpose<const Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0> >, const Eigen::Matrix<double, -1, 1> > >; Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56:   required from ‘typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Transpose<const Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0> >, const Eigen::Matrix<double, -1, 1> >; typename Eigen::internal::traits<T>::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25:   required from ‘typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::sum() const [with Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Transpose<const Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0> >, const Eigen::Matrix<double, -1, 1> >; typename Eigen::internal::traits<T>::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:251:64:   required from ‘static void Eigen::internal::generic_product_impl<Lhs, Rhs, Eigen::DenseShape, Eigen::DenseShape, 6>::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix<double, 1, 1, 0, 1, 1>; Lhs = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>; Rhs = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:124:75:   required from ‘Eigen::internal::product_evaluator<Eigen::Product<Lhs, Rhs, Option>, ProductTag, LhsShape, RhsShape>::product_evaluator(const XprType&) [with Lhs = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>; Rhs = Eigen::Matrix<double, -1, 1>; int Options = 0; int ProductTag = 6; LhsShape = Eigen::DenseShape; RhsShape = Eigen::DenseShape; typename Eigen::internal::traits<typename Eigen::Product<Lhs, Rhs, Option>::Lhs>::Scalar = double; typename Eigen::Product<Lhs, Rhs, Option>::Lhs = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>; typename Eigen::internal::traits<typename Eigen::Product<Lhs, Rhs, Option>::Rhs>::Scalar = double; typename Eigen::Product<Lhs, Rhs, Option>::Rhs = Eigen::Matrix<double, -1, 1>; XprType = Eigen::Product<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>, Eigen::Matrix<double, -1, 1>, 0>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:35:90:   required from ‘Eigen::internal::evaluator<Eigen::Product<Lhs, Rhs, Option> >::evaluator(const XprType&) [with Lhs = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>; Rhs = Eigen::Matrix<double, -1, 1>; int Options = 0; XprType = Eigen::Product<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>, Eigen::Matrix<double, -1, 1>, 0>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:137:22:   required from ‘Eigen::internal::dense_product_base<Lhs, Rhs, Option, 6>::operator const Scalar() const [with Lhs = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>; Rhs = Eigen::Matrix<double, -1, 1>; int Option = 0; Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0:   required from ‘double stan::mcmc::dense_e_metric<Model, BaseRNG>::T(stan::mcmc::dense_e_point&) [with Model = model_shrinkage_namespace::model_shrinkage; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, 1, -1, true>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, 1, -1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, 1, -1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:172:103:   required from ‘class Eigen::internal::BlockImpl_dense<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, 1, -1, true, false>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   required from ‘class Eigen::BlockImpl<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, 1, -1, true, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81:   required from ‘class Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, 1, -1, true>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:380:43:   [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:251:64:   required from ‘static void Eigen::internal::generic_product_impl<Lhs, Rhs, Eigen::DenseShape, Eigen::DenseShape, 6>::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix<double, 1, 1, 0, 1, 1>; Lhs = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>; Rhs = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:124:75:   required from ‘Eigen::internal::product_evaluator<Eigen::Product<Lhs, Rhs, Option>, ProductTag, LhsShape, RhsShape>::product_evaluator(const XprType&) [with Lhs = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>; Rhs = Eigen::Matrix<double, -1, 1>; int Options = 0; int ProductTag = 6; LhsShape = Eigen::DenseShape; RhsShape = Eigen::DenseShape; typename Eigen::internal::traits<typename Eigen::Product<Lhs, Rhs, Option>::Lhs>::Scalar = double; typename Eigen::Product<Lhs, Rhs, Option>::Lhs = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>; typename Eigen::internal::traits<typename Eigen::Product<Lhs, Rhs, Option>::Rhs>::Scalar = double; typename Eigen::Product<Lhs, Rhs, Option>::Rhs = Eigen::Matrix<double, -1, 1>; XprType = Eigen::Product<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>, Eigen::Matrix<double, -1, 1>, 0>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:35:90:   required from ‘Eigen::internal::evaluator<Eigen::Product<Lhs, Rhs, Option> >::evaluator(const XprType&) [with Lhs = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>; Rhs = Eigen::Matrix<double, -1, 1>; int Options = 0; XprType = Eigen::Product<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>, Eigen::Matrix<double, -1, 1>, 0>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:137:22:   required from ‘Eigen::internal::dense_product_base<Lhs, Rhs, Option, 6>::operator const Scalar() const [with Lhs = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>; Rhs = Eigen::Matrix<double, -1, 1>; int Option = 0; Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0:   required from ‘double stan::mcmc::dense_e_metric<Model, BaseRNG>::T(stan::mcmc::dense_e_point&) [with Model = model_shrinkage_namespace::model_shrinkage; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
   56 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Matrix<double, 1, -1> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Matrix<double, 1, -1> >, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Matrix<double, 1, -1> >, 3>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Transpose<Eigen::Matrix<double, 1, -1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Transpose<Eigen::Matrix<double, 1, -1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37:   required from ‘class Eigen::TransposeImpl<Eigen::Matrix<double, 1, -1>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   [ skipping 17 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:251:64:   required from ‘static void Eigen::internal::generic_product_impl<Lhs, Rhs, Eigen::DenseShape, Eigen::DenseShape, 6>::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix<double, 1, 1, 0, 1, 1>; Lhs = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>; Rhs = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:124:75:   required from ‘Eigen::internal::product_evaluator<Eigen::Product<Lhs, Rhs, Option>, ProductTag, LhsShape, RhsShape>::product_evaluator(const XprType&) [with Lhs = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>; Rhs = Eigen::Matrix<double, -1, 1>; int Options = 0; int ProductTag = 6; LhsShape = Eigen::DenseShape; RhsShape = Eigen::DenseShape; typename Eigen::internal::traits<typename Eigen::Product<Lhs, Rhs, Option>::Lhs>::Scalar = double; typename Eigen::Product<Lhs, Rhs, Option>::Lhs = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>; typename Eigen::internal::traits<typename Eigen::Product<Lhs, Rhs, Option>::Rhs>::Scalar = double; typename Eigen::Product<Lhs, Rhs, Option>::Rhs = Eigen::Matrix<double, -1, 1>; XprType = Eigen::Product<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>, Eigen::Matrix<double, -1, 1>, 0>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:35:90:   required from ‘Eigen::internal::evaluator<Eigen::Product<Lhs, Rhs, Option> >::evaluator(const XprType&) [with Lhs = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>; Rhs = Eigen::Matrix<double, -1, 1>; int Options = 0; XprType = Eigen::Product<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>, Eigen::Matrix<double, -1, 1>, 0>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:137:22:   required from ‘Eigen::internal::dense_product_base<Lhs, Rhs, Option, 6>::operator const Scalar() const [with Lhs = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>; Rhs = Eigen::Matrix<double, -1, 1>; int Option = 0; Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0:   required from ‘double stan::mcmc::dense_e_metric<Model, BaseRNG>::T(stan::mcmc::dense_e_point&) [with Model = model_shrinkage_namespace::model_shrinkage; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Transpose<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Transpose<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37:   required from ‘class Eigen::TransposeImpl<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   required from ‘class Eigen::Transpose<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:207:43:   required from ‘static void Eigen::internal::gemv_dense_selector<1, StorageOrder, BlasCompatible>::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >; Rhs = Eigen::Matrix<double, -1, -1>; Dest = Eigen::Matrix<double, 1, -1>; int StorageOrder = 0; bool BlasCompatible = true; typename Dest::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:388:34:   [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:251:64:   required from ‘static void Eigen::internal::generic_product_impl<Lhs, Rhs, Eigen::DenseShape, Eigen::DenseShape, 6>::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix<double, 1, 1, 0, 1, 1>; Lhs = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>; Rhs = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:124:75:   required from ‘Eigen::internal::product_evaluator<Eigen::Product<Lhs, Rhs, Option>, ProductTag, LhsShape, RhsShape>::product_evaluator(const XprType&) [with Lhs = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>; Rhs = Eigen::Matrix<double, -1, 1>; int Options = 0; int ProductTag = 6; LhsShape = Eigen::DenseShape; RhsShape = Eigen::DenseShape; typename Eigen::internal::traits<typename Eigen::Product<Lhs, Rhs, Option>::Lhs>::Scalar = double; typename Eigen::Product<Lhs, Rhs, Option>::Lhs = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>; typename Eigen::internal::traits<typename Eigen::Product<Lhs, Rhs, Option>::Rhs>::Scalar = double; typename Eigen::Product<Lhs, Rhs, Option>::Rhs = Eigen::Matrix<double, -1, 1>; XprType = Eigen::Product<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>, Eigen::Matrix<double, -1, 1>, 0>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:35:90:   required from ‘Eigen::internal::evaluator<Eigen::Product<Lhs, Rhs, Option> >::evaluator(const XprType&) [with Lhs = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>; Rhs = Eigen::Matrix<double, -1, 1>; int Options = 0; XprType = Eigen::Product<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>, Eigen::Matrix<double, -1, 1>, 0>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:137:22:   required from ‘Eigen::internal::dense_product_base<Lhs, Rhs, Option, 6>::operator const Scalar() const [with Lhs = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>; Rhs = Eigen::Matrix<double, -1, 1>; int Option = 0; Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0:   required from ‘double stan::mcmc::dense_e_metric<Model, BaseRNG>::T(stan::mcmc::dense_e_point&) [with Model = model_shrinkage_namespace::model_shrinkage; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, 1, -1, true> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Transpose<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, 1, -1, true> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Transpose<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, 1, -1, true> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37:   required from ‘class Eigen::TransposeImpl<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, 1, -1, true>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   required from ‘class Eigen::Transpose<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, 1, -1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:23:   required from ‘static Eigen::internal::dot_nocheck<T, U, true>::ResScalar Eigen::internal::dot_nocheck<T, U, true>::run(const Eigen::MatrixBase<Derived>&, const Eigen::MatrixBase<U>&) [with T = Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, 1, -1, true>; U = Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, true>; ResScalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58:   [ skipping 16 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:251:64:   required from ‘static void Eigen::internal::generic_product_impl<Lhs, Rhs, Eigen::DenseShape, Eigen::DenseShape, 6>::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix<double, 1, 1, 0, 1, 1>; Lhs = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>; Rhs = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:124:75:   required from ‘Eigen::internal::product_evaluator<Eigen::Product<Lhs, Rhs, Option>, ProductTag, LhsShape, RhsShape>::product_evaluator(const XprType&) [with Lhs = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>; Rhs = Eigen::Matrix<double, -1, 1>; int Options = 0; int ProductTag = 6; LhsShape = Eigen::DenseShape; RhsShape = Eigen::DenseShape; typename Eigen::internal::traits<typename Eigen::Product<Lhs, Rhs, Option>::Lhs>::Scalar = double; typename Eigen::Product<Lhs, Rhs, Option>::Lhs = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>; typename Eigen::internal::traits<typename Eigen::Product<Lhs, Rhs, Option>::Rhs>::Scalar = double; typename Eigen::Product<Lhs, Rhs, Option>::Rhs = Eigen::Matrix<double, -1, 1>; XprType = Eigen::Product<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>, Eigen::Matrix<double, -1, 1>, 0>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:35:90:   required from ‘Eigen::internal::evaluator<Eigen::Product<Lhs, Rhs, Option> >::evaluator(const XprType&) [with Lhs = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>; Rhs = Eigen::Matrix<double, -1, 1>; int Options = 0; XprType = Eigen::Product<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>, Eigen::Matrix<double, -1, 1>, 0>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:137:22:   required from ‘Eigen::internal::dense_product_base<Lhs, Rhs, Option, 6>::operator const Scalar() const [with Lhs = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>; Rhs = Eigen::Matrix<double, -1, 1>; int Option = 0; Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0:   required from ‘double stan::mcmc::dense_e_metric<Model, BaseRNG>::T(stan::mcmc::dense_e_point&) [with Model = model_shrinkage_namespace::model_shrinkage; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, 1, -1, true> >, const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, true> >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, 1, -1, true> >, const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, true> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, 1, -1, true> >, const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, true> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, 1, -1, true> >, const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, true>, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, 1, -1, true> >, const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:56:   required from ‘static Eigen::internal::dot_nocheck<T, U, true>::ResScalar Eigen::internal::dot_nocheck<T, U, true>::run(const Eigen::MatrixBase<Derived>&, const Eigen::MatrixBase<U>&) [with T = Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, 1, -1, true>; U = Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, true>; ResScalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58:   [ skipping 16 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:251:64:   required from ‘static void Eigen::internal::generic_product_impl<Lhs, Rhs, Eigen::DenseShape, Eigen::DenseShape, 6>::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix<double, 1, 1, 0, 1, 1>; Lhs = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>; Rhs = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:124:75:   required from ‘Eigen::internal::product_evaluator<Eigen::Product<Lhs, Rhs, Option>, ProductTag, LhsShape, RhsShape>::product_evaluator(const XprType&) [with Lhs = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>; Rhs = Eigen::Matrix<double, -1, 1>; int Options = 0; int ProductTag = 6; LhsShape = Eigen::DenseShape; RhsShape = Eigen::DenseShape; typename Eigen::internal::traits<typename Eigen::Product<Lhs, Rhs, Option>::Lhs>::Scalar = double; typename Eigen::Product<Lhs, Rhs, Option>::Lhs = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>; typename Eigen::internal::traits<typename Eigen::Product<Lhs, Rhs, Option>::Rhs>::Scalar = double; typename Eigen::Product<Lhs, Rhs, Option>::Rhs = Eigen::Matrix<double, -1, 1>; XprType = Eigen::Product<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>, Eigen::Matrix<double, -1, 1>, 0>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:35:90:   required from ‘Eigen::internal::evaluator<Eigen::Product<Lhs, Rhs, Option> >::evaluator(const XprType&) [with Lhs = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>; Rhs = Eigen::Matrix<double, -1, 1>; int Options = 0; XprType = Eigen::Product<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>, Eigen::Matrix<double, -1, 1>, 0>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:137:22:   required from ‘Eigen::internal::dense_product_base<Lhs, Rhs, Option, 6>::operator const Scalar() const [with Lhs = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>; Rhs = Eigen::Matrix<double, -1, 1>; int Option = 0; Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0:   required from ‘double stan::mcmc::dense_e_metric<Model, BaseRNG>::T(stan::mcmc::dense_e_point&) [with Model = model_shrinkage_namespace::model_shrinkage; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Transpose<const Eigen::Matrix<double, -1, 1> > >, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Transpose<const Eigen::Matrix<double, -1, 1> > >, 2>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Transpose<const Eigen::Transpose<const Eigen::Matrix<double, -1, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Transpose<const Eigen::Transpose<const Eigen::Matrix<double, -1, 1> > > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37:   required from ‘class Eigen::TransposeImpl<const Eigen::Transpose<const Eigen::Matrix<double, -1, 1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   required from ‘class Eigen::Transpose<const Eigen::Transpose<const Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/BlasUtil.h:506:13:   [ skipping 18 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:251:64:   required from ‘static void Eigen::internal::generic_product_impl<Lhs, Rhs, Eigen::DenseShape, Eigen::DenseShape, 6>::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix<double, 1, 1, 0, 1, 1>; Lhs = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>; Rhs = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:124:75:   required from ‘Eigen::internal::product_evaluator<Eigen::Product<Lhs, Rhs, Option>, ProductTag, LhsShape, RhsShape>::product_evaluator(const XprType&) [with Lhs = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>; Rhs = Eigen::Matrix<double, -1, 1>; int Options = 0; int ProductTag = 6; LhsShape = Eigen::DenseShape; RhsShape = Eigen::DenseShape; typename Eigen::internal::traits<typename Eigen::Product<Lhs, Rhs, Option>::Lhs>::Scalar = double; typename Eigen::Product<Lhs, Rhs, Option>::Lhs = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>; typename Eigen::internal::traits<typename Eigen::Product<Lhs, Rhs, Option>::Rhs>::Scalar = double; typename Eigen::Product<Lhs, Rhs, Option>::Rhs = Eigen::Matrix<double, -1, 1>; XprType = Eigen::Product<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>, Eigen::Matrix<double, -1, 1>, 0>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:35:90:   required from ‘Eigen::internal::evaluator<Eigen::Product<Lhs, Rhs, Option> >::evaluator(const XprType&) [with Lhs = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>; Rhs = Eigen::Matrix<double, -1, 1>; int Options = 0; XprType = Eigen::Product<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>, Eigen::Matrix<double, -1, 1>, 0>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:137:22:   required from ‘Eigen::internal::dense_product_base<Lhs, Rhs, Option, 6>::operator const Scalar() const [with Lhs = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>; Rhs = Eigen::Matrix<double, -1, 1>; int Option = 0; Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0:   required from ‘double stan::mcmc::dense_e_metric<Model, BaseRNG>::T(stan::mcmc::dense_e_point&) [with Model = model_shrinkage_namespace::model_shrinkage; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Transpose<Eigen::Matrix<double, 1, -1> >, -1, 1, true>, 0>’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Transpose<Eigen::Matrix<double, 1, -1> >, -1, 1, true>, 1>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Transpose<Eigen::Matrix<double, 1, -1> >, -1, 1, true>, 3>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Block<Eigen::Transpose<Eigen::Matrix<double, 1, -1> >, -1, 1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Block<Eigen::Transpose<Eigen::Matrix<double, 1, -1> >, -1, 1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Block<Eigen::Transpose<Eigen::Matrix<double, 1, -1> >, -1, 1, true>, 0>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34:   [ skipping 21 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:251:64:   required from ‘static void Eigen::internal::generic_product_impl<Lhs, Rhs, Eigen::DenseShape, Eigen::DenseShape, 6>::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix<double, 1, 1, 0, 1, 1>; Lhs = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>; Rhs = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:124:75:   required from ‘Eigen::internal::product_evaluator<Eigen::Product<Lhs, Rhs, Option>, ProductTag, LhsShape, RhsShape>::product_evaluator(const XprType&) [with Lhs = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>; Rhs = Eigen::Matrix<double, -1, 1>; int Options = 0; int ProductTag = 6; LhsShape = Eigen::DenseShape; RhsShape = Eigen::DenseShape; typename Eigen::internal::traits<typename Eigen::Product<Lhs, Rhs, Option>::Lhs>::Scalar = double; typename Eigen::Product<Lhs, Rhs, Option>::Lhs = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>; typename Eigen::internal::traits<typename Eigen::Product<Lhs, Rhs, Option>::Rhs>::Scalar = double; typename Eigen::Product<Lhs, Rhs, Option>::Rhs = Eigen::Matrix<double, -1, 1>; XprType = Eigen::Product<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>, Eigen::Matrix<double, -1, 1>, 0>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:35:90:   required from ‘Eigen::internal::evaluator<Eigen::Product<Lhs, Rhs, Option> >::evaluator(const XprType&) [with Lhs = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>; Rhs = Eigen::Matrix<double, -1, 1>; int Options = 0; XprType = Eigen::Product<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>, Eigen::Matrix<double, -1, 1>, 0>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:137:22:   required from ‘Eigen::internal::dense_product_base<Lhs, Rhs, Option, 6>::operator const Scalar() const [with Lhs = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>; Rhs = Eigen::Matrix<double, -1, 1>; int Option = 0; Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0:   required from ‘double stan::mcmc::dense_e_metric<Model, BaseRNG>::T(stan::mcmc::dense_e_point&) [with Model = model_shrinkage_namespace::model_shrinkage; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator<Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, 1, -1, true> >’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8:   required from ‘struct Eigen::internal::evaluator<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, 1, -1, true> >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:311:41:   required from ‘struct Eigen::internal::unary_evaluator<Eigen::Transpose<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, 1, -1, true> >, Eigen::internal::IndexBased, double>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8:   required from ‘struct Eigen::internal::evaluator<Eigen::Transpose<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, 1, -1, true> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8:   required from ‘struct Eigen::internal::evaluator<const Eigen::Transpose<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, 1, -1, true> > >’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:41:   required from ‘struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, 1, -1, true> >, const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8:   [ skipping 21 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:251:64:   required from ‘static void Eigen::internal::generic_product_impl<Lhs, Rhs, Eigen::DenseShape, Eigen::DenseShape, 6>::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix<double, 1, 1, 0, 1, 1>; Lhs = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>; Rhs = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:124:75:   required from ‘Eigen::internal::product_evaluator<Eigen::Product<Lhs, Rhs, Option>, ProductTag, LhsShape, RhsShape>::product_evaluator(const XprType&) [with Lhs = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>; Rhs = Eigen::Matrix<double, -1, 1>; int Options = 0; int ProductTag = 6; LhsShape = Eigen::DenseShape; RhsShape = Eigen::DenseShape; typename Eigen::internal::traits<typename Eigen::Product<Lhs, Rhs, Option>::Lhs>::Scalar = double; typename Eigen::Product<Lhs, Rhs, Option>::Lhs = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>; typename Eigen::internal::traits<typename Eigen::Product<Lhs, Rhs, Option>::Rhs>::Scalar = double; typename Eigen::Product<Lhs, Rhs, Option>::Rhs = Eigen::Matrix<double, -1, 1>; XprType = Eigen::Product<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>, Eigen::Matrix<double, -1, 1>, 0>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:35:90:   required from ‘Eigen::internal::evaluator<Eigen::Product<Lhs, Rhs, Option> >::evaluator(const XprType&) [with Lhs = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>; Rhs = Eigen::Matrix<double, -1, 1>; int Options = 0; XprType = Eigen::Product<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>, Eigen::Matrix<double, -1, 1>, 0>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:137:22:   required from ‘Eigen::internal::dense_product_base<Lhs, Rhs, Option, 6>::operator const Scalar() const [with Lhs = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>; Rhs = Eigen::Matrix<double, -1, 1>; int Option = 0; Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0:   required from ‘double stan::mcmc::dense_e_metric<Model, BaseRNG>::T(stan::mcmc::dense_e_point&) [with Model = model_shrinkage_namespace::model_shrinkage; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
 1071 |     PacketAlignment = unpacket_traits<PacketScalar>::alignment,
      |                                                      ^~~~~~~~~
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase<Derived>&) [with Derived = Eigen::CwiseBinaryOp<scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, 1, -1, true> >, const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, true> >; Eigen::Index = long int]’:
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63:   required from ‘static Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::Scalar Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, 1, -1, true> >, const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, true> >; Func = Eigen::internal::scalar_sum_op<double, double>; Evaluator = Eigen::internal::redux_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, 1, -1, true> >, const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, true> > >; Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56:   required from ‘typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, 1, -1, true> >, const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, true> >; typename Eigen::internal::traits<T>::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25:   required from ‘typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::sum() const [with Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, 1, -1, true> >, const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, true> >; typename Eigen::internal::traits<T>::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:50:63:   required from ‘static Eigen::internal::dot_nocheck<T, U, true>::ResScalar Eigen::internal::dot_nocheck<T, U, true>::run(const Eigen::MatrixBase<Derived>&, const Eigen::MatrixBase<U>&) [with T = Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, 1, -1, true>; U = Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, true>; ResScalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58:   required from ‘typename Eigen::ScalarBinaryOpTraits<typename Eigen::internal::traits<T>::Scalar, typename Eigen::internal::traits<OtherDerived>::Scalar>::ReturnType Eigen::MatrixBase<Derived>::dot(const Eigen::MatrixBase<OtherDerived>&) const [with OtherDerived = Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, true>; Derived = Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, 1, -1, true>; typename Eigen::ScalarBinaryOpTraits<typename Eigen::internal::traits<T>::Scalar, typename Eigen::internal::traits<OtherDerived>::Scalar>::ReturnType = double; typename Eigen::internal::traits<T>::Scalar = double; typename Eigen::internal::traits<OtherDerived>::Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:380:62:   [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:251:64:   required from ‘static void Eigen::internal::generic_product_impl<Lhs, Rhs, Eigen::DenseShape, Eigen::DenseShape, 6>::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix<double, 1, 1, 0, 1, 1>; Lhs = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>; Rhs = Eigen::Matrix<double, -1, 1>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:124:75:   required from ‘Eigen::internal::product_evaluator<Eigen::Product<Lhs, Rhs, Option>, ProductTag, LhsShape, RhsShape>::product_evaluator(const XprType&) [with Lhs = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>; Rhs = Eigen::Matrix<double, -1, 1>; int Options = 0; int ProductTag = 6; LhsShape = Eigen::DenseShape; RhsShape = Eigen::DenseShape; typename Eigen::internal::traits<typename Eigen::Product<Lhs, Rhs, Option>::Lhs>::Scalar = double; typename Eigen::Product<Lhs, Rhs, Option>::Lhs = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>; typename Eigen::internal::traits<typename Eigen::Product<Lhs, Rhs, Option>::Rhs>::Scalar = double; typename Eigen::Product<Lhs, Rhs, Option>::Rhs = Eigen::Matrix<double, -1, 1>; XprType = Eigen::Product<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>, Eigen::Matrix<double, -1, 1>, 0>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:35:90:   required from ‘Eigen::internal::evaluator<Eigen::Product<Lhs, Rhs, Option> >::evaluator(const XprType&) [with Lhs = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>; Rhs = Eigen::Matrix<double, -1, 1>; int Options = 0; XprType = Eigen::Product<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>, Eigen::Matrix<double, -1, 1>, 0>]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:137:22:   required from ‘Eigen::internal::dense_product_base<Lhs, Rhs, Option, 6>::operator const Scalar() const [with Lhs = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>; Rhs = Eigen::Matrix<double, -1, 1>; int Option = 0; Scalar = double]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0:   required from ‘double stan::mcmc::dense_e_metric<Model, BaseRNG>::T(stan::mcmc::dense_e_point&) [with Model = model_shrinkage_namespace::model_shrinkage; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]’
/home/biocbuild/bbs-3.20-bioc/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:0:   required from here
/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
  654 |   return internal::first_aligned<int(unpacket_traits<DefaultPacketType>::alignment),Derived>(m);
      |                                                                          ^~~~~~~~~
g++ -std=gnu++17 -shared -L/home/biocbuild/bbs-3.20-bioc/R/lib -L/usr/local/lib -o decontX.so DecontX.o RcppExports.o matrixNorm.o matrixSums.o matrixSumsSparse.o stanExports_shrinkage.o -L/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppParallel/lib/ -Wl,-rpath,/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppParallel/lib/ -ltbb -ltbbmalloc -L/home/biocbuild/bbs-3.20-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.20-bioc/R/site-library/00LOCK-decontX/00new/decontX/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (decontX)

Tests output

decontX.Rcheck/tests/testthat.Rout


R version 4.4.1 (2024-06-14) -- "Race for Your Life"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu

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> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
> 
> library(testthat)
> library(decontX)
> 
> test_check("decontX")
--------------------------------------------------
Starting DecontX
--------------------------------------------------
Mon Nov 18 22:39:45 2024 .. Analyzing all cells
Mon Nov 18 22:39:45 2024 .... Converting to sparse matrix
Mon Nov 18 22:39:45 2024 .... Generating UMAP
Mon Nov 18 22:39:50 2024 .... Estimating contamination
Mon Nov 18 22:39:50 2024 .. Calculating final decontaminated matrix
--------------------------------------------------
Completed DecontX. Total time: 4.297414 secs
--------------------------------------------------
--------------------------------------------------
Starting DecontX
--------------------------------------------------
Mon Nov 18 22:39:50 2024 .. Analyzing cells in batch '1'
Mon Nov 18 22:39:50 2024 .... Converting to sparse matrix
Mon Nov 18 22:39:50 2024 .... Generating UMAP
Mon Nov 18 22:39:53 2024 .... Estimating contamination
Mon Nov 18 22:39:53 2024 .. Calculating final decontaminated matrix
Mon Nov 18 22:39:53 2024 .. Analyzing cells in batch '2'
Mon Nov 18 22:39:53 2024 .... Converting to sparse matrix
Mon Nov 18 22:39:53 2024 .... Generating UMAP
Mon Nov 18 22:39:56 2024 .... Estimating contamination
Mon Nov 18 22:39:56 2024 .. Calculating final decontaminated matrix
--------------------------------------------------
Completed DecontX. Total time: 6.511395 secs
--------------------------------------------------
--------------------------------------------------
Starting DecontX
--------------------------------------------------
Mon Nov 18 22:39:56 2024 .. Analyzing all cells
Mon Nov 18 22:39:56 2024 .... Converting to sparse matrix
Mon Nov 18 22:39:56 2024 .... Generating UMAP and estimating cell types
Mon Nov 18 22:40:00 2024 .... Estimating contamination
Mon Nov 18 22:40:00 2024 ...... Completed iteration: 9 | converge: 0.0009154
Mon Nov 18 22:40:00 2024 .. Calculating final decontaminated matrix
--------------------------------------------------
Completed DecontX. Total time: 3.335759 secs
--------------------------------------------------
--------------------------------------------------
Starting DecontX
--------------------------------------------------
Mon Nov 18 22:40:00 2024 .. Analyzing all cells
Mon Nov 18 22:40:00 2024 .... Converting to sparse matrix
Mon Nov 18 22:40:00 2024 .... Generating UMAP and estimating cell types
Mon Nov 18 22:40:03 2024 .... Estimating contamination
Mon Nov 18 22:40:03 2024 ...... Completed iteration: 10 | converge: 0.02021
Mon Nov 18 22:40:03 2024 ...... Completed iteration: 20 | converge: 0.00284
Mon Nov 18 22:40:03 2024 ...... Completed iteration: 30 | converge: 0.0009675
Mon Nov 18 22:40:03 2024 .. Calculating final decontaminated matrix
--------------------------------------------------
Completed DecontX. Total time: 3.275525 secs
--------------------------------------------------
--------------------------------------------------
Starting DecontX
--------------------------------------------------
Mon Nov 18 22:40:03 2024 .. Analyzing all cells
Mon Nov 18 22:40:03 2024 .... Converting to sparse matrix
Mon Nov 18 22:40:03 2024 .... Generating UMAP and estimating cell types
Mon Nov 18 22:40:07 2024 .... Estimating contamination
Mon Nov 18 22:40:07 2024 ...... Completed iteration: 9 | converge: 0.0009154
Mon Nov 18 22:40:07 2024 .. Calculating final decontaminated matrix
--------------------------------------------------
Completed DecontX. Total time: 3.258627 secs
--------------------------------------------------
--------------------------------------------------
Starting DecontX
--------------------------------------------------
Mon Nov 18 22:40:07 2024 .. Analyzing all cells
Mon Nov 18 22:40:07 2024 .... Converting to sparse matrix
Mon Nov 18 22:40:07 2024 .... Generating UMAP and estimating cell types
Mon Nov 18 22:40:10 2024 .... Estimating contamination
Mon Nov 18 22:40:10 2024 ...... Completed iteration: 9 | converge: 0.0008168
Mon Nov 18 22:40:10 2024 .. Calculating final decontaminated matrix
--------------------------------------------------
Completed DecontX. Total time: 3.353976 secs
--------------------------------------------------
--------------------------------------------------
Starting DecontX
--------------------------------------------------
Mon Nov 18 22:40:11 2024 .. Analyzing all cells
Mon Nov 18 22:40:11 2024 .... Converting to sparse matrix
Mon Nov 18 22:40:11 2024 .... Generating UMAP and estimating cell types
Mon Nov 18 22:40:14 2024 .... Estimating contamination
Mon Nov 18 22:40:14 2024 ...... Completed iteration: 10 | converge: 0.02021
Mon Nov 18 22:40:14 2024 ...... Completed iteration: 20 | converge: 0.00284
Mon Nov 18 22:40:14 2024 ...... Completed iteration: 30 | converge: 0.0009675
Mon Nov 18 22:40:14 2024 .. Calculating final decontaminated matrix
--------------------------------------------------
Completed DecontX. Total time: 3.408474 secs
--------------------------------------------------
--------------------------------------------------
Starting DecontX
--------------------------------------------------
Mon Nov 18 22:40:14 2024 .. Analyzing all cells
Mon Nov 18 22:40:14 2024 .... Converting to sparse matrix
--------------------------------------------------
Starting DecontX
--------------------------------------------------
Mon Nov 18 22:40:14 2024 .. Analyzing all cells
Mon Nov 18 22:40:14 2024 .... Converting to sparse matrix
--------------------------------------------------
Starting DecontX
--------------------------------------------------
Mon Nov 18 22:40:14 2024 .. Analyzing all cells
Mon Nov 18 22:40:14 2024 .... Converting to sparse matrix
Mon Nov 18 22:40:14 2024 .... Generating UMAP
Mon Nov 18 22:40:17 2024 .... Generating UMAP
Chain 1: ------------------------------------------------------------
Chain 1: EXPERIMENTAL ALGORITHM:
Chain 1:   This procedure has not been thoroughly tested and may be unstable
Chain 1:   or buggy. The interface is subject to change.
Chain 1: ------------------------------------------------------------
Chain 1: 
Chain 1: 
Chain 1: 
Chain 1: Gradient evaluation took 0.000919 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 9.19 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1: 
Chain 1: 
Chain 1: Begin eta adaptation.
Chain 1: Iteration:   1 / 250 [  0%]  (Adaptation)
Chain 1: Iteration:  50 / 250 [ 20%]  (Adaptation)
Chain 1: Iteration: 100 / 250 [ 40%]  (Adaptation)
Chain 1: Iteration: 150 / 250 [ 60%]  (Adaptation)
Chain 1: Iteration: 200 / 250 [ 80%]  (Adaptation)
Chain 1: Success! Found best value [eta = 1] earlier than expected.
Chain 1: 
Chain 1: Begin stochastic gradient ascent.
Chain 1:   iter             ELBO   delta_ELBO_mean   delta_ELBO_med   notes 
Chain 1:    100        -8039.760             1.000            1.000
Chain 1:    200        -5731.482             0.701            1.000
Chain 1:    300        -5570.966             0.477            0.403
Chain 1:    400        -5510.810             0.361            0.403
Chain 1:    500        -5480.807             0.290            0.029
Chain 1:    600        -5451.166             0.242            0.029
Chain 1:    700        -5416.328             0.209            0.011
Chain 1:    800        -5401.248             0.183            0.011
Chain 1:    900        -5395.230             0.163            0.006   MEDIAN ELBO CONVERGED
Chain 1: 
Chain 1: Drawing a sample of size 1000 from the approximate posterior... 
Chain 1: COMPLETED.
[ FAIL 0 | WARN 13 | SKIP 2 | PASS 19 ]

══ Skipped tests (2) ═══════════════════════════════════════════════════════════
• empty test (2): 'test-decon.R:27:1', 'test-decon.R:48:1'

[ FAIL 0 | WARN 13 | SKIP 2 | PASS 19 ]
> 
> proc.time()
   user  system elapsed 
 59.348   1.360  60.704

Example timings

decontX.Rcheck/decontX-Ex.timings

name	user	system	elapsed
decontPro	9.579	0.205	9.786
decontX	8.803	0.208	9.013
plotBoxByCluster	0.535	0.023	0.559
plotDecontXContamination	7.591	0.190	7.781
plotDecontXMarkerExpression	7.740	0.081	7.821
plotDecontXMarkerPercentage	7.883	0.139	8.023
plotDensity	0.549	0.048	0.598
retrieveFeatureIndex	0.001	0.000	0.000
simulateContamination	0.01	0.00	0.01