Back to Multiple platform build/check report for BioC 3.21:   simplified   long
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This page was generated on 2025-10-13 11:41 -0400 (Mon, 13 Oct 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.3 LTS)x86_644.5.1 (2025-06-13) -- "Great Square Root" 4833
merida1macOS 12.7.5 Montereyx86_644.5.1 RC (2025-06-05 r88288) -- "Great Square Root" 4614
kjohnson1macOS 13.6.6 Venturaarm644.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" 4555
kunpeng2Linux (openEuler 24.03 LTS)aarch64R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" 4586
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 491/2341HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
cyanoFilter 1.16.0  (landing page)
Oluwafemi Olusoji
Snapshot Date: 2025-10-09 13:40 -0400 (Thu, 09 Oct 2025)
git_url: https://git.bioconductor.org/packages/cyanoFilter
git_branch: RELEASE_3_21
git_last_commit: b0e1a35
git_last_commit_date: 2025-04-15 12:25:42 -0400 (Tue, 15 Apr 2025)
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 12.7.5 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson1macOS 13.6.6 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
kunpeng2Linux (openEuler 24.03 LTS) / aarch64  OK    OK    OK  


CHECK results for cyanoFilter on kunpeng2

To the developers/maintainers of the cyanoFilter package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/cyanoFilter.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results


Summary

Package: cyanoFilter
Version: 1.16.0
Command: /home/biocbuild/R/R/bin/R CMD check --install=check:cyanoFilter.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings cyanoFilter_1.16.0.tar.gz
StartedAt: 2025-10-10 07:49:11 -0000 (Fri, 10 Oct 2025)
EndedAt: 2025-10-10 07:51:20 -0000 (Fri, 10 Oct 2025)
EllapsedTime: 128.1 seconds
RetCode: 0
Status:   OK  
CheckDir: cyanoFilter.Rcheck
Warnings: 0

Command output

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD check --install=check:cyanoFilter.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings cyanoFilter_1.16.0.tar.gz
###
##############################################################################
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* using log directory ‘/home/biocbuild/bbs-3.21-bioc/meat/cyanoFilter.Rcheck’
* using R Under development (unstable) (2025-02-19 r87757)
* using platform: aarch64-unknown-linux-gnu
* R was compiled by
    aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0
    GNU Fortran (GCC) 14.2.0
* running under: openEuler 24.03 (LTS-SP1)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘cyanoFilter/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘cyanoFilter’ version ‘1.16.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘cyanoFilter’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
              user system elapsed
gateFunc    13.939  0.458  11.766
ggpairsDens  7.591  0.267   7.876
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

cyanoFilter.Rcheck/00install.out

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD INSTALL cyanoFilter
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/R/R-devel_2025-02-19/site-library’
* installing *source* package ‘cyanoFilter’ ...
** this is package ‘cyanoFilter’ version ‘1.16.0’
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (cyanoFilter)

Tests output


Example timings

cyanoFilter.Rcheck/cyanoFilter-Ex.timings

nameusersystemelapsed
MarginEvents0.9770.0721.054
PhytoFilter0.8140.0080.824
PhytopFilter1.0790.0641.145
accTest0.4750.0080.484
accuracy0.5590.0120.572
cellmargin0.4050.0040.410
clusterExtract1.0830.0041.090
clusterExtractp1.0830.0041.089
debrisNc0.4250.0280.453
fullFlowframe-MarginEvents-method0.4180.0040.424
fullFlowframe-PhytopFilter-method0.7950.0280.825
fullFlowframe0.3990.0040.404
gateFunc13.939 0.45811.766
ggpairsDens7.5910.2677.876
ggplotDens0.9240.0320.958
ggplotDens21.3970.0561.456
goodfcs0.0690.0000.070
is.DebrisFilter0.0010.0000.000
is.MarginEvents000
is.PhytopFilter000
is.flowFrame0.0010.0000.000
is.flowSet000
lnTrans0.2820.0000.282
newFlowframe0.2890.0080.297
nona0.1370.0000.138
noneg0.2270.0000.228
oneDgate0.6850.0520.738
pairsPlot2.1280.0482.180
pigmentGate0.3650.0120.378
reducedFlowframe-MarginEvents-method0.4000.0040.405
reducedFlowframe0.3880.0080.397
retain0.0510.0000.052
rowNumbers0.2800.0080.289
summaries-DebrisFilter-method0.3920.0080.401
summaries-MarginEvents-method0.4240.0040.429
summaries-PhytopFilter-method0.8590.0120.873
summaries0.4070.0120.419