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This page was generated on 2025-03-10 12:12 -0400 (Mon, 10 Mar 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4670 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.3 (2025-02-28 ucrt) -- "Trophy Case" | 4355 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4446 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4439 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4306 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 456/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| crisprBwa 1.10.0 (landing page) Jean-Philippe Fortin
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK |  | ||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | ... NOT SUPPORTED ... | ||||||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | ERROR | skipped | ||||||||||
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To the developers/maintainers of the crisprBwa package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/crisprBwa.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: crisprBwa |
| Version: 1.10.0 |
| Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data crisprBwa |
| StartedAt: 2025-03-07 00:38:30 -0000 (Fri, 07 Mar 2025) |
| EndedAt: 2025-03-07 00:39:20 -0000 (Fri, 07 Mar 2025) |
| EllapsedTime: 50.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data crisprBwa ### ############################################################################## ############################################################################## * checking for file ‘crisprBwa/DESCRIPTION’ ... OK * preparing ‘crisprBwa’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘crisprBwa.Rmd’ using rmarkdown [bwa_index] Pack FASTA... 0.00 sec [bwa_index] Construct BWT for the packed sequence... [bwa_index] 0.04 seconds elapse. [bwa_index] Update BWT... 0.00 sec [bwa_index] Pack forward-only FASTA... 0.00 sec [bwa_index] Construct SA from BWT and Occ... 0.01 sec [main] Version: 0.7.17-r1198-dirty [main] CMD: /home/biocbuild/R/R-4.4.3/site-library/Rbwa/bwa index -p /home/biocbuild/tmp/RtmpN3vknh/chr12 /home/biocbuild/tmp/RtmpClkosj/Rinst13c2f943f6d4d7/crisprBwa/example/chr12.fa [main] Real time: 0.079 sec; CPU: 0.054 sec Quitting from lines 125-141 [unnamed-chunk-3] (crisprBwa.Rmd) Error: processing vignette 'crisprBwa.Rmd' failed with diagnostics: there is no package called 'BSgenome.Hsapiens.UCSC.hg38' --- failed re-building ‘crisprBwa.Rmd’ SUMMARY: processing the following file failed: ‘crisprBwa.Rmd’ Error: Vignette re-building failed. Execution halted