Multiple platform build/check report for BioC 3.20 - BUILD results for chromstaR on kjohnson3

Hostname	OS	Arch (*)	R version	Installed pkgs
teran2	Linux (Ubuntu 24.04.1 LTS)	x86_64	4.4.1 (2024-06-14) -- "Race for Your Life"	4505
palomino8	Windows Server 2022 Datacenter	x64	4.4.1 (2024-06-14 ucrt) -- "Race for Your Life"	4506
lconway	macOS 12.7.1 Monterey	x86_64	4.4.1 (2024-06-14) -- "Race for Your Life"	4538
kjohnson3	macOS 13.6.5 Ventura	arm64	4.4.1 (2024-06-14) -- "Race for Your Life"	4486
kunpeng2	Linux (openEuler 22.03 LTS-SP1)	aarch64	4.4.1 (2024-06-14) -- "Race for Your Life"	4493
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for chromstaR on kjohnson3

To the developers/maintainers of the chromstaR package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/chromstaR.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: chromstaR

Version: 1.32.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data chromstaR

StartedAt: 2024-11-08 16:27:44 -0500 (Fri, 08 Nov 2024)

EndedAt: 2024-11-08 16:28:48 -0500 (Fri, 08 Nov 2024)

EllapsedTime: 64.7 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data chromstaR
###
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* checking for file ‘chromstaR/DESCRIPTION’ ... OK
* preparing ‘chromstaR’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘chromstaR.Rnw’ using knitr
2024-11-08 16:28:20.787 R[76375:1446351] XType: Using static font registry.
2024-11-08 16:28:20.816 R[76376:1446349] XType: Using static font registry.
2024-11-08 16:28:20.825 R[76377:1446350] XType: Using static font registry.
2024-11-08 16:28:34.247 R[76919:1447600] XType: Using static font registry.
2024-11-08 16:28:34.253 R[76918:1447599] XType: Using static font registry.
2024-11-08 16:28:34.436 R[76920:1447601] XType: Using static font registry.
2024-11-08 16:28:34.578 R[76921:1447602] XType: Using static font registry.

Quitting from lines 377-396 [multivariate_combinatorial_enrichment] (chromstaR.Rnw)
Error: processing vignette 'chromstaR.Rnw' failed with diagnostics:
The given dataset:  rnorvegicus_gene_ensembl , is not valid.  Correct dataset names can be obtained with the listDatasets() function.
--- failed re-building ‘chromstaR.Rnw’

SUMMARY: processing the following file failed:
  ‘chromstaR.Rnw’

Error: Vignette re-building failed.
Execution halted