Back to Multiple platform build/check report for BioC 3.21: simplified long |
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This page was generated on 2025-09-29 11:40 -0400 (Mon, 29 Sep 2025).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4827 |
merida1 | macOS 12.7.5 Monterey | x86_64 | 4.5.1 RC (2025-06-05 r88288) -- "Great Square Root" | 4608 |
kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" | 4549 |
kunpeng2 | Linux (openEuler 24.03 LTS) | aarch64 | R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" | 4580 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 312/2341 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
cellxgenedp 1.12.1 (landing page) Martin Morgan
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||||
merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK | ![]() | ||||||||
kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
kunpeng2 | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
To the developers/maintainers of the cellxgenedp package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/cellxgenedp.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: cellxgenedp |
Version: 1.12.1 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data cellxgenedp |
StartedAt: 2025-09-25 20:51:49 -0400 (Thu, 25 Sep 2025) |
EndedAt: 2025-09-25 20:52:12 -0400 (Thu, 25 Sep 2025) |
EllapsedTime: 22.9 seconds |
RetCode: 1 |
Status: ERROR |
PackageFile: None |
PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data cellxgenedp ### ############################################################################## ############################################################################## * checking for file ‘cellxgenedp/DESCRIPTION’ ... OK * preparing ‘cellxgenedp’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘a_using_cellxgenedp.Rmd’ using rmarkdown Quitting from a_using_cellxgenedp.Rmd:89-91 [unnamed-chunk-6] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `.cellxgene_cache_get()`: ! Internal Server Error (HTTP 500). --- Backtrace: ▆ 1. └─cellxgenedp::db() 2. └─cellxgenedp:::.db(overwrite) 3. └─cellxgenedp:::.cellxgene_cache_get(...) 4. └─httr::stop_for_status(response) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'a_using_cellxgenedp.Rmd' failed with diagnostics: Internal Server Error (HTTP 500). --- failed re-building ‘a_using_cellxgenedp.Rmd’ --- re-building ‘b_case_studies.Rmd’ using rmarkdown Quitting from b_case_studies.Rmd:68-76 [unnamed-chunk-2] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `.cellxgene_cache_get()`: ! Internal Server Error (HTTP 500). --- Backtrace: ▆ 1. ├─dplyr::left_join(...) 2. └─cellxgenedp::authors() 3. ├─rjsoncons::j_query(cellxgene_db, "[?not_null(publisher_metadata)]") 4. │ ├─rjsoncons:::.j_valid(...) 5. │ │ ├─base::stopifnot(...) 6. │ │ └─rjsoncons:::.is_j_data_type(data_type) 7. │ └─rjsoncons::j_data_type(data) 8. └─cellxgenedp::db() 9. └─cellxgenedp:::.db(overwrite) 10. └─cellxgenedp:::.cellxgene_cache_get(...) 11. └─httr::stop_for_status(response) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'b_case_studies.Rmd' failed with diagnostics: Internal Server Error (HTTP 500). --- failed re-building ‘b_case_studies.Rmd’ SUMMARY: processing the following files failed: ‘a_using_cellxgenedp.Rmd’ ‘b_case_studies.Rmd’ Error: Vignette re-building failed. Execution halted