Multiple platform build/check report for BioC 3.21 - CHECK results for biodbChebi on nebbiolo1

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.3 LTS)	x86_64	4.5.1 (2025-06-13) -- "Great Square Root"	4824
merida1	macOS 12.7.5 Monterey	x86_64	4.5.1 RC (2025-06-05 r88288) -- "Great Square Root"	4604
kjohnson1	macOS 13.6.6 Ventura	arm64	4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root"	4545
kunpeng2	Linux (openEuler 24.03 LTS)	aarch64	R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences"	4579
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

CHECK results for biodbChebi on nebbiolo1

To the developers/maintainers of the biodbChebi package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biodbChebi.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: biodbChebi

Version: 1.14.0

Command: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD check --install=check:biodbChebi.install-out.txt --library=/home/biocbuild/bbs-3.21-bioc/R/site-library --timings biodbChebi_1.14.0.tar.gz

StartedAt: 2025-08-20 20:31:37 -0400 (Wed, 20 Aug 2025)

EndedAt: 2025-08-20 20:32:56 -0400 (Wed, 20 Aug 2025)

EllapsedTime: 79.3 seconds

RetCode: 0

Status: OK

CheckDir: biodbChebi.Rcheck

Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD check --install=check:biodbChebi.install-out.txt --library=/home/biocbuild/bbs-3.21-bioc/R/site-library --timings biodbChebi_1.14.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.21-bioc/meat/biodbChebi.Rcheck’
* using R version 4.5.1 (2025-06-13)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
    GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.3 LTS
* using session charset: UTF-8
* checking for file ‘biodbChebi/DESCRIPTION’ ... OK
* this is package ‘biodbChebi’ version ‘1.14.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbChebi’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: OK

Installation output

biodbChebi.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD INSTALL biodbChebi
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.21-bioc/R/site-library’
* installing *source* package ‘biodbChebi’ ...
** this is package ‘biodbChebi’ version ‘1.14.0’
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbChebi)

Tests output

biodbChebi.Rcheck/tests/testthat.Rout


R version 4.5.1 (2025-06-13) -- "Great Square Root"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> # vi: fdm=marker
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbChebi)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbChebi")
biodb.INFO [2025-08-20 20:32:18.378][biodb::testContext]
biodb.INFO [2025-08-20 20:32:18.380][biodb::testContext] ********************************************************************************
biodb.INFO [2025-08-20 20:32:18.393][biodb::testContext] Test context - Generic tests
biodb.INFO [2025-08-20 20:32:18.394][biodb::testContext] ********************************************************************************
biodb.INFO [2025-08-20 20:32:18.395][biodb::testContext]
biodb.INFO [2025-08-20 20:32:18.401][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.16.0.
biodb.DEBUG[2025-08-20 20:32:18.403][self$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.21-bioc/R/site-library/biodb/definitions.yml".
biodb.DEBUG[2025-08-20 20:32:18.410][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-08-20 20:32:18.411][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-08-20 20:32:18.412][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-08-20 20:32:18.413][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:18.414][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:18.414][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:18.415][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-08-20 20:32:18.433][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-08-20 20:32:18.434][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:18.435][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:18.436][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:18.437][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-08-20 20:32:18.438][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-08-20 20:32:18.439][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:18.439][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:18.440][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:18.441][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-08-20 20:32:18.442][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-08-20 20:32:18.443][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-08-20 20:32:18.444][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:18.445][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:18.446][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:18.447][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-08-20 20:32:18.448][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-08-20 20:32:18.449][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-08-20 20:32:18.450][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:18.450][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:18.451][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:18.452][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-08-20 20:32:18.453][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-08-20 20:32:18.454][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:18.455][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:18.456][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:18.457][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-08-20 20:32:18.458][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-08-20 20:32:18.459][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-08-20 20:32:18.459][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:18.460][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:18.461][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:18.462][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-08-20 20:32:18.463][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-08-20 20:32:18.464][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:18.465][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:18.466][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:18.467][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-08-20 20:32:18.467][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-08-20 20:32:18.468][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-08-20 20:32:18.469][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:18.470][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:18.471][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:18.472][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-08-20 20:32:18.473][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-08-20 20:32:18.474][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-08-20 20:32:18.475][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-08-20 20:32:18.476][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-08-20 20:32:18.477][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-08-20 20:32:18.478][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:18.478][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:18.479][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:18.480][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-08-20 20:32:18.481][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-08-20 20:32:18.482][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:18.483][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:18.484][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:18.485][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-08-20 20:32:18.486][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-08-20 20:32:18.487][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:18.487][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:18.488][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:18.489][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-08-20 20:32:18.490][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-08-20 20:32:18.491][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:18.492][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:18.493][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:18.494][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-08-20 20:32:18.495][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-08-20 20:32:18.496][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:18.496][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:18.497][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:18.498][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-08-20 20:32:18.499][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-08-20 20:32:18.500][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:18.501][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:18.502][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:18.503][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-08-20 20:32:18.504][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-08-20 20:32:18.508][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-08-20 20:32:18.508][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:18.509][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:18.510][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:18.511][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-08-20 20:32:18.512][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-08-20 20:32:18.513][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-08-20 20:32:18.514][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:18.515][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:18.516][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:18.519][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-08-20 20:32:18.550][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-08-20 20:32:18.565][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-08-20 20:32:18.572][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-20 20:32:18.573][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-20 20:32:18.574][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-08-20 20:32:18.575][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-08-20 20:32:18.576][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-08-20 20:32:18.577][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-08-20 20:32:18.578][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-08-20 20:32:18.579][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-20 20:32:18.580][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-08-20 20:32:18.580][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-08-20 20:32:18.581][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-20 20:32:18.582][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-08-20 20:32:18.583][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-08-20 20:32:18.584][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-08-20 20:32:18.584][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-08-20 20:32:18.584][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-08-20 20:32:18.584][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-08-20 20:32:18.584][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-08-20 20:32:18.585][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-08-20 20:32:18.586][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-20 20:32:18.587][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-20 20:32:18.588][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-20 20:32:18.589][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-20 20:32:18.590][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-20 20:32:18.591][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-20 20:32:18.592][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-08-20 20:32:18.593][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-20 20:32:18.593][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-20 20:32:18.594][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-08-20 20:32:18.595][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-08-20 20:32:18.596][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-08-20 20:32:18.598][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-08-20 20:32:18.599][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-08-20 20:32:18.600][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-20 20:32:18.601][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-20 20:32:18.602][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-08-20 20:32:18.603][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-08-20 20:32:18.604][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-08-20 20:32:18.605][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-08-20 20:32:18.606][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-08-20 20:32:18.607][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-20 20:32:18.608][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-08-20 20:32:18.609][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-08-20 20:32:18.610][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-20 20:32:18.611][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-08-20 20:32:18.618][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-08-20 20:32:18.619][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-08-20 20:32:18.619][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-08-20 20:32:18.619][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-08-20 20:32:18.619][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-08-20 20:32:18.619][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-08-20 20:32:18.621][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-08-20 20:32:18.622][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-20 20:32:18.623][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-20 20:32:18.624][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-20 20:32:18.625][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-20 20:32:18.626][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-20 20:32:18.627][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-20 20:32:18.628][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-08-20 20:32:18.629][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-20 20:32:18.630][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-20 20:32:18.631][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-08-20 20:32:18.632][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-08-20 20:32:18.634][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-08-20 20:32:18.636][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-08-20 20:32:18.637][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-08-20 20:32:18.638][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-20 20:32:18.639][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-20 20:32:18.640][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-08-20 20:32:18.641][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-08-20 20:32:18.642][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-08-20 20:32:18.643][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-08-20 20:32:18.644][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-08-20 20:32:18.645][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-20 20:32:18.647][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-08-20 20:32:18.648][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-08-20 20:32:18.649][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-20 20:32:18.650][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-08-20 20:32:18.651][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-08-20 20:32:18.652][self$setPropertyValue] Setting property "searchable.fields" to "<NULL>".
biodb.DEBUG[2025-08-20 20:32:18.653][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-08-20 20:32:18.654][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-20 20:32:18.655][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-20 20:32:18.656][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-20 20:32:18.657][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-20 20:32:18.658][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-20 20:32:18.659][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-20 20:32:18.660][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-08-20 20:32:18.661][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-20 20:32:18.662][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-20 20:32:18.663][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-08-20 20:32:18.664][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-08-20 20:32:18.665][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-08-20 20:32:18.667][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-08-20 20:32:18.668][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-08-20 20:32:18.670][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-20 20:32:18.671][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-20 20:32:18.672][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-08-20 20:32:18.673][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-08-20 20:32:18.674][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-08-20 20:32:18.675][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-08-20 20:32:18.676][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-08-20 20:32:18.677][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-20 20:32:18.678][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-08-20 20:32:18.679][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-08-20 20:32:18.680][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-20 20:32:18.681][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-08-20 20:32:18.682][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-08-20 20:32:18.683][self$setPropertyValue] Setting property "searchable.fields" to "<NULL>".
biodb.DEBUG[2025-08-20 20:32:18.684][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-08-20 20:32:18.685][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-20 20:32:18.686][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-20 20:32:18.687][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-20 20:32:18.688][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-20 20:32:18.689][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-20 20:32:18.690][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-20 20:32:18.691][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-08-20 20:32:18.692][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-20 20:32:18.693][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-20 20:32:18.694][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-08-20 20:32:18.695][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-08-20 20:32:18.700][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-08-20 20:32:18.701][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:18.702][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:18.703][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:18.704][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:18.705][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:18.706][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:18.707][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:18.708][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:18.709][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:18.710][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:18.711][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:18.712][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:18.713][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:18.714][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:18.714][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:18.715][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:18.716][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:18.717][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:18.718][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:18.719][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:18.720][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:18.721][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:18.722][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:18.723][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:18.724][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:18.725][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:18.726][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:18.727][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:18.728][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:18.729][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:18.730][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:18.730][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:18.731][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:18.732][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:18.733][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:18.734][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:18.735][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:18.736][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:18.737][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:18.738][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:18.739][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:18.740][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:18.741][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:18.742][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:18.743][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:18.744][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:18.745][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:18.746][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:18.746][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:18.747][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:18.748][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:18.749][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:18.750][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:18.751][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:18.752][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:18.753][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:18.754][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:18.755][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:18.756][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:18.757][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:18.758][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:18.759][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:18.760][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:18.761][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:18.762][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:18.762][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:18.776][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:18.777][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:18.778][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:18.779][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:18.780][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:18.780][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:18.781][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:18.782][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:18.783][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:18.784][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:18.785][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:18.786][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:18.787][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:18.788][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:18.789][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:18.790][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:18.791][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:18.792][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:18.793][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:18.794][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:18.794][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:18.796][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-08-20 20:32:18.801][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-08-20 20:32:18.802][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-08-20 20:32:18.804][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-08-20 20:32:18.805][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-08-20 20:32:18.807][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-08-20 20:32:18.808][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-08-20 20:32:18.810][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-08-20 20:32:18.811][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-08-20 20:32:18.813][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-08-20 20:32:18.814][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-08-20 20:32:18.815][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-08-20 20:32:18.817][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-08-20 20:32:18.818][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-08-20 20:32:18.820][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-08-20 20:32:18.821][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-08-20 20:32:18.822][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-08-20 20:32:18.824][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-08-20 20:32:18.825][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-08-20 20:32:18.826][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-08-20 20:32:18.828][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-08-20 20:32:18.829][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-08-20 20:32:18.830][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-08-20 20:32:18.832][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-08-20 20:32:18.833][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-08-20 20:32:18.834][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-08-20 20:32:18.836][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-08-20 20:32:18.837][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-08-20 20:32:18.839][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-08-20 20:32:18.840][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-08-20 20:32:18.841][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-08-20 20:32:18.843][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-08-20 20:32:18.844][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-08-20 20:32:18.845][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-08-20 20:32:18.847][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-08-20 20:32:18.848][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-08-20 20:32:18.849][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-08-20 20:32:18.851][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-08-20 20:32:18.852][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-08-20 20:32:18.853][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-08-20 20:32:18.855][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-08-20 20:32:18.856][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-08-20 20:32:18.857][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-08-20 20:32:18.859][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-08-20 20:32:18.860][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-08-20 20:32:18.861][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-08-20 20:32:18.863][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-08-20 20:32:18.864][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-08-20 20:32:18.865][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-08-20 20:32:18.867][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-08-20 20:32:18.868][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-08-20 20:32:18.869][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-08-20 20:32:18.871][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-08-20 20:32:18.872][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-08-20 20:32:18.874][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-08-20 20:32:18.875][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-08-20 20:32:18.876][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-08-20 20:32:18.878][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-08-20 20:32:18.879][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-08-20 20:32:18.880][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-08-20 20:32:18.882][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-08-20 20:32:18.883][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-08-20 20:32:18.884][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-08-20 20:32:18.886][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-08-20 20:32:18.887][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-08-20 20:32:18.888][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-08-20 20:32:18.890][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-08-20 20:32:18.891][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-08-20 20:32:18.892][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-08-20 20:32:18.894][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-08-20 20:32:18.895][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-08-20 20:32:18.897][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-08-20 20:32:18.898][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-08-20 20:32:18.899][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-08-20 20:32:18.900][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-08-20 20:32:18.902][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-08-20 20:32:18.903][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-08-20 20:32:18.905][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-08-20 20:32:18.906][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-08-20 20:32:18.907][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-08-20 20:32:18.909][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-08-20 20:32:18.910][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-08-20 20:32:18.911][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-08-20 20:32:18.918][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-08-20 20:32:18.919][initialize] This is biodb version 1.16.0.
biodb.DEBUG[2025-08-20 20:32:18.922][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-08-20 20:32:18.923][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:18.924][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:18.925][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:18.926][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:18.931][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:18.931][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:18.932][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:18.933][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:18.934][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:18.935][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:18.936][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:18.937][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:18.938][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:18.938][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:18.939][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:18.940][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:18.941][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:18.942][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:18.943][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:18.944][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:18.945][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:18.945][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:18.952][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:18.952][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:18.953][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:18.954][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:18.955][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:18.956][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:18.957][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:18.957][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:18.958][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:18.959][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:18.960][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:18.961][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:18.962][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:18.963][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:18.963][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:18.964][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:18.965][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:18.966][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:18.967][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:18.968][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:18.969][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:18.970][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:18.971][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:18.971][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:18.972][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:18.973][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:18.974][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:18.975][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:18.976][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:18.977][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:18.977][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:18.978][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:18.979][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:18.980][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:18.981][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:18.982][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:18.983][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:18.984][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:18.984][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:18.985][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:18.986][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:18.987][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:18.988][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:18.989][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:18.990][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:18.991][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:18.991][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:18.992][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:18.993][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:18.994][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:18.995][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:18.996][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:18.997][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:18.998][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:18.999][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:18.999][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:19.000][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:19.001][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:19.002][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:19.003][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:19.004][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:19.005][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:19.006][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:19.006][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:19.007][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:19.008][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:19.009][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:19.010][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:19.011][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:19.012][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:19.012][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:19.013][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:19.014][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:19.015][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:19.016][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:19.017][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:19.018][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:19.019][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:19.020][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:19.020][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:19.021][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:19.022][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:19.023][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:19.024][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:19.025][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:19.026][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:19.027][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:19.027][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:19.028][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:19.029][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:19.030][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:19.031][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:19.032][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:19.033][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:19.033][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:19.034][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:19.035][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:19.036][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:19.037][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:19.038][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:19.039][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:19.040][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.21-bioc/R/site-library/biodbChebi/definitions.yml".
biodb.DEBUG[2025-08-20 20:32:19.050][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2025-08-20 20:32:19.052][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-08-20 20:32:19.053][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-08-20 20:32:19.054][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-20 20:32:19.055][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-20 20:32:19.056][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-08-20 20:32:19.057][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-08-20 20:32:19.058][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-08-20 20:32:19.059][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2025-08-20 20:32:19.059][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-08-20 20:32:19.060][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-20 20:32:19.061][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-08-20 20:32:19.062][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2025-08-20 20:32:19.063][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-20 20:32:19.064][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2025-08-20 20:32:19.064][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2025-08-20 20:32:19.064][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2025-08-20 20:32:19.064][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2025-08-20 20:32:19.064][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2025-08-20 20:32:19.064][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2025-08-20 20:32:19.064][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2025-08-20 20:32:19.064][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2025-08-20 20:32:19.064][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2025-08-20 20:32:19.064][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2025-08-20 20:32:19.064][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2025-08-20 20:32:19.066][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-08-20 20:32:19.066][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-08-20 20:32:19.066][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-08-20 20:32:19.066][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-08-20 20:32:19.067][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-08-20 20:32:19.068][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-20 20:32:19.069][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-20 20:32:19.070][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-20 20:32:19.071][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-20 20:32:19.072][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-20 20:32:19.073][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-20 20:32:19.074][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-20 20:32:19.074][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2025-08-20 20:32:19.075][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-20 20:32:19.076][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-20 20:32:19.077][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-08-20 20:32:19.078][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2025-08-20 20:32:19.078][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2025-08-20 20:32:19.084][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-08-20 20:32:19.085][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-08-20 20:32:19.087][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2025-08-20 20:32:19.088][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-08-20 20:32:19.090][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-08-20 20:32:19.091][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-08-20 20:32:19.114][super$initialize] Initialize connector chebi.
biodb.DEBUG[2025-08-20 20:32:19.115][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2025-08-20 20:32:19.119][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2025-08-20 20:32:19.123][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2025-08-20 20:32:19.165][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-08-20 20:32:19.166][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-08-20 20:32:19.167][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2025-08-20 20:32:19.168][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2025-08-20 20:32:19.177][biodb::testThat]
biodb.INFO [2025-08-20 20:32:19.178][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2025-08-20 20:32:19.179][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-20 20:32:19.180][biodb::testThat]
biodb.TRACE[2025-08-20 20:32:19.183][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/bbs-3.21-bioc/R/site-library/biodbChebi/testref/entry-chebi-15440-content.xml".
biodb.DEBUG[2025-08-20 20:32:19.185][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-20 20:32:19.189][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-20 20:32:19.196][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:19.197][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:19.198][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:19.210][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:19.211][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:19.212][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:19.213][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:19.222][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:19.223][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:19.224][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.225][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.226][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:19.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:19.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.242][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-20 20:32:19.243][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-20 20:32:19.244][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.245][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.270][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-20 20:32:19.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-20 20:32:19.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.275][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-20 20:32:19.276][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-20 20:32:19.277][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.278][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.279][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-20 20:32:19.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-20 20:32:19.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.283][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-20 20:32:19.284][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-20 20:32:19.285][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.286][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.287][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-20 20:32:19.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-20 20:32:19.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.291][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-20 20:32:19.292][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-20 20:32:19.293][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.294][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.295][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-20 20:32:19.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-20 20:32:19.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.299][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-20 20:32:19.300][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-20 20:32:19.301][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.302][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.304][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-20 20:32:19.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-20 20:32:19.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.308][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-20 20:32:19.309][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:19.309][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.310][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.312][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-20 20:32:19.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:19.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.316][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:19.317][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:19.318][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.319][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.320][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:19.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:19.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.331][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-20 20:32:19.332][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-20 20:32:19.333][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.334][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.336][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-20 20:32:19.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-20 20:32:19.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.339][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-20 20:32:19.340][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-20 20:32:19.341][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.342][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.344][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-20 20:32:19.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-20 20:32:19.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.348][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-20 20:32:19.349][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-20 20:32:19.350][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.350][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.352][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-20 20:32:19.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-20 20:32:19.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.356][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:19.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:19.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.360][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:19.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:19.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.364][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:19.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:19.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.367][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:19.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:19.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.371][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:19.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:19.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.375][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:19.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:19.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.379][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:19.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:19.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.414][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:19.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:19.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.418][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:19.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:19.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.422][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:19.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:19.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:19.425][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 15440.
biodb.TRACE[2025-08-20 20:32:19.428][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-20 20:32:19.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-20 20:32:19.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.432][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-20 20:32:19.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-20 20:32:19.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.463][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-20 20:32:19.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-20 20:32:19.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.467][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-20 20:32:19.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-20 20:32:19.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.472][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:19.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:19.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.476][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:19.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:19.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.480][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-08-20 20:32:19.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-08-20 20:32:19.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.484][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-08-20 20:32:19.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-08-20 20:32:19.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.488][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-08-20 20:32:19.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-08-20 20:32:19.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.491][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-08-20 20:32:19.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-08-20 20:32:19.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.510][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:19.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:19.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.526][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:19.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:19.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.533][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:19.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:19.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.537][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:19.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:19.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.541][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:19.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:19.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.546][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:19.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:19.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.550][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:19.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:19.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.554][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:19.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:19.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.558][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:19.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:19.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.562][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:19.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:19.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.566][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:19.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:19.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.576][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:19.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:19.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.580][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:19.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:19.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.584][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:19.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:19.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.587][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:19.588][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:19.589][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.590][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.591][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:19.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:19.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.607][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:19.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:19.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.610][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:19.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:19.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.614][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:19.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:19.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.618][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:19.619][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:19.620][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.621][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.622][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:19.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:19.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.633][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-20 20:32:19.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-20 20:32:19.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.636][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-20 20:32:19.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-20 20:32:19.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.640][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-20 20:32:19.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-20 20:32:19.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.644][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-20 20:32:19.645][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-20 20:32:19.646][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.647][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.648][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-20 20:32:19.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-20 20:32:19.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.659][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-20 20:32:19.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-20 20:32:19.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.663][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-20 20:32:19.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-20 20:32:19.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.667][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-20 20:32:19.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-20 20:32:19.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.671][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-20 20:32:19.672][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-20 20:32:19.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.673][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.674][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-20 20:32:19.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-20 20:32:19.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.685][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:19.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:19.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.689][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:19.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:19.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.693][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:19.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:19.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.697][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:19.698][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:19.698][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.699][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.700][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:19.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:19.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.711][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:19.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:19.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.715][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:19.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:19.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.719][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:19.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:19.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.722][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:19.723][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:19.724][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.725][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.726][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:19.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:19.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.741][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-20 20:32:19.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-20 20:32:19.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.745][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-20 20:32:19.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-20 20:32:19.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.749][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-20 20:32:19.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-20 20:32:19.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.752][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-20 20:32:19.754][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-20 20:32:19.754][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.755][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.756][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-20 20:32:19.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-20 20:32:19.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.767][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-20 20:32:19.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-20 20:32:19.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.771][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-20 20:32:19.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-20 20:32:19.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.775][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-20 20:32:19.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-20 20:32:19.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.779][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-20 20:32:19.780][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-20 20:32:19.781][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.782][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.783][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-20 20:32:19.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-20 20:32:19.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.793][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-20 20:32:19.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-20 20:32:19.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.797][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-20 20:32:19.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-20 20:32:19.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.801][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-20 20:32:19.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-20 20:32:19.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.805][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-20 20:32:19.806][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-20 20:32:19.807][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.808][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.809][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-20 20:32:19.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-20 20:32:19.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.819][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-20 20:32:19.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-20 20:32:19.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.823][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-20 20:32:19.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-20 20:32:19.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.827][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-20 20:32:19.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-20 20:32:19.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.831][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-20 20:32:19.832][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-20 20:32:19.833][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.834][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.835][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-20 20:32:19.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-20 20:32:19.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.845][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-20 20:32:19.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-20 20:32:19.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.849][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-20 20:32:19.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-20 20:32:19.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.853][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-20 20:32:19.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-20 20:32:19.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.857][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-20 20:32:19.858][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-20 20:32:19.859][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.860][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.861][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-20 20:32:19.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-20 20:32:19.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.875][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-20 20:32:19.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-20 20:32:19.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.879][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-20 20:32:19.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-20 20:32:19.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.883][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-20 20:32:19.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-20 20:32:19.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.887][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-20 20:32:19.888][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-20 20:32:19.889][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.889][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.890][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-20 20:32:19.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-20 20:32:19.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.901][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:19.902][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:19.903][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.904][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.908][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-20 20:32:19.909][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-20 20:32:19.910][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.911][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.915][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-20 20:32:19.916][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-20 20:32:19.917][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.918][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.922][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-20 20:32:19.923][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-20 20:32:19.924][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.925][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.929][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-20 20:32:19.930][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-20 20:32:19.931][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.931][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.935][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-20 20:32:19.936][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-20 20:32:19.937][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.938][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.942][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:19.943][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:19.944][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.945][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.949][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:19.950][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:19.951][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.952][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.956][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-20 20:32:19.957][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-20 20:32:19.958][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.959][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.963][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-20 20:32:19.964][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-20 20:32:19.965][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.966][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:19.970][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-20 20:32:19.971][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-20 20:32:19.972][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:19.972][ef$get] fields variable is a list.
biodb.INFO [2025-08-20 20:32:19.979][biodb::testThat]
biodb.INFO [2025-08-20 20:32:19.980][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2025-08-20 20:32:19.981][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-20 20:32:19.982][biodb::testThat]
biodb.DEBUG[2025-08-20 20:32:19.995][private$loadEntries] Creating entries from ids [1]: "15440".
biodb.DEBUG[2025-08-20 20:32:20.002][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-20 20:32:20.006][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15440".
biodb.TRACE[2025-08-20 20:32:20.012][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-20 20:32:20.013][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15440.xml".
biodb.DEBUG[2025-08-20 20:32:20.014][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-20 20:32:20.037][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-20 20:32:20.039][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-20 20:32:20.040][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:20.041][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:20.042][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:20.046][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:20.047][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:20.048][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:20.049][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:20.051][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:20.052][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:20.053][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:20.054][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:20.056][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:20.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:20.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:20.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:20.075][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-20 20:32:20.076][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-20 20:32:20.077][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:20.078][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:20.080][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-20 20:32:20.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-20 20:32:20.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:20.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:20.084][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-20 20:32:20.085][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-20 20:32:20.086][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:20.086][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:20.088][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-20 20:32:20.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-20 20:32:20.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:20.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:20.092][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-20 20:32:20.093][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-20 20:32:20.094][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:20.094][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:20.096][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-20 20:32:20.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-20 20:32:20.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:20.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:20.100][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-20 20:32:20.101][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-20 20:32:20.102][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:20.103][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:20.104][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-20 20:32:20.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-20 20:32:20.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:20.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:20.108][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-20 20:32:20.109][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-20 20:32:20.110][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:20.111][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:20.112][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-20 20:32:20.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-20 20:32:20.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:20.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:20.116][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-20 20:32:20.117][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:20.118][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:20.119][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:20.120][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-20 20:32:20.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:20.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:20.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:20.124][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:20.125][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:20.126][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:20.127][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:20.128][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:20.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:20.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:20.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:20.136][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-20 20:32:20.137][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-20 20:32:20.138][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:20.139][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:20.140][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-20 20:32:20.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-20 20:32:20.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:20.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:20.144][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-20 20:32:20.145][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-20 20:32:20.146][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:20.147][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:20.148][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-20 20:32:20.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-20 20:32:20.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:20.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:20.152][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-20 20:32:20.153][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-20 20:32:20.154][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:20.155][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:20.156][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-20 20:32:20.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-20 20:32:20.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:20.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:20.160][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:20.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:20.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:20.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:20.164][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:20.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:20.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:20.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:20.168][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:20.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:20.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:20.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:20.172][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:20.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:20.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:20.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:20.176][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:20.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:20.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:20.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:20.179][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:20.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:20.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:20.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:20.183][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:20.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:20.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:20.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:20.187][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:20.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:20.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:20.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:20.191][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:20.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:20.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:20.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:20.195][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:20.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:20.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:20.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:20.199][self$createEntryFromContent] Accession numbers: 15440.
biodb.TRACE[2025-08-20 20:32:20.200][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-08-20 20:32:20.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-08-20 20:32:20.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:20.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:20.204][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-08-20 20:32:20.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-08-20 20:32:20.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:20.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:20.208][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-08-20 20:32:20.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-08-20 20:32:20.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:20.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-08-20 20:32:20.218][biodb::testThat]
biodb.INFO [2025-08-20 20:32:20.219][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2025-08-20 20:32:20.220][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-20 20:32:20.221][biodb::testThat]
biodb.TRACE[2025-08-20 20:32:20.223][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-20 20:32:20.224][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-20 20:32:20.225][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:20.226][ef$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:20.227][function(conn, opt)] Testing searchForEntries() with entry "15440" and field "name".
biodb.TRACE[2025-08-20 20:32:20.251][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-20 20:32:20.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-20 20:32:20.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:20.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:20.255][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-20 20:32:20.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-20 20:32:20.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:20.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:20.259][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-20 20:32:20.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-20 20:32:20.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:20.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:20.269][function(conn, opt)] With value "squalene".
biodb.DEBUG[2025-08-20 20:32:20.274][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2025-08-20 20:32:20.293][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-20 20:32:20.309][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2025-08-20 20:32:20.310][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-20 20:32:20.312][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2025-08-20 20:32:20.334][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-20 20:32:20.338][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-20 20:32:20.339][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-08-20 20:32:20.340][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-20 20:32:20.342][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2025-08-20 20:32:20.344][function(conn, opt)] With found IDs [1]: "15440".
biodb.TRACE[2025-08-20 20:32:20.354][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:20.355][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:20.356][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:20.357][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:20.358][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:20.359][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:20.360][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:20.361][ef$get] fields variable is a list.
biodb.INFO [2025-08-20 20:32:20.365][biodb::testThat]
biodb.INFO [2025-08-20 20:32:20.366][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2025-08-20 20:32:20.367][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-20 20:32:20.368][biodb::testThat]
biodb.TRACE[2025-08-20 20:32:20.395][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-20 20:32:20.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-20 20:32:20.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:20.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:20.399][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-20 20:32:20.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-20 20:32:20.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:20.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:20.403][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-20 20:32:20.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-20 20:32:20.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:20.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:20.461][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-20 20:32:20.464][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-20 20:32:20.466][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-08-20 20:32:20.467][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-20 20:32:20.469][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.INFO [2025-08-20 20:32:20.483][biodb::testThat]
biodb.INFO [2025-08-20 20:32:20.484][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2025-08-20 20:32:20.485][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-20 20:32:20.486][biodb::testThat]
biodb.TRACE[2025-08-20 20:32:20.505][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-20 20:32:20.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-20 20:32:20.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:20.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:20.513][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-20 20:32:20.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-20 20:32:20.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:20.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:20.517][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-20 20:32:20.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-20 20:32:20.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:20.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:20.521][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-20 20:32:20.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-20 20:32:20.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:20.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:20.525][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:20.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:20.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:20.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:20.529][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:20.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:20.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:20.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:20.533][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-08-20 20:32:20.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-08-20 20:32:20.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:20.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:20.537][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-08-20 20:32:20.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-08-20 20:32:20.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:20.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:20.540][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-08-20 20:32:20.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-08-20 20:32:20.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:20.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:20.544][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-08-20 20:32:20.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-08-20 20:32:20.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:20.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:20.566][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-20 20:32:20.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-20 20:32:20.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:20.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:20.570][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-20 20:32:20.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-20 20:32:20.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:20.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:20.574][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-20 20:32:20.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-20 20:32:20.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:20.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:20.578][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-20 20:32:20.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-20 20:32:20.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:20.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:20.581][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:20.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:20.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:20.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:20.585][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:20.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:20.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:20.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:20.589][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-08-20 20:32:20.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-08-20 20:32:20.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:20.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:20.593][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-08-20 20:32:20.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-08-20 20:32:20.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:20.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:20.597][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-08-20 20:32:20.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-08-20 20:32:20.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:20.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:20.600][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-08-20 20:32:20.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-08-20 20:32:20.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:20.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-08-20 20:32:20.609][biodb::testThat]
biodb.INFO [2025-08-20 20:32:20.610][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2025-08-20 20:32:20.611][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-20 20:32:20.612][biodb::testThat]
biodb.INFO [2025-08-20 20:32:20.619][biodb::testThat]
biodb.INFO [2025-08-20 20:32:20.620][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2025-08-20 20:32:20.621][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-20 20:32:20.622][biodb::testThat]
biodb.INFO [2025-08-20 20:32:20.630][biodb::testThat]
biodb.INFO [2025-08-20 20:32:20.631][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2025-08-20 20:32:20.632][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-20 20:32:20.633][biodb::testThat]
biodb.DEBUG[2025-08-20 20:32:20.640][function(conn, opt)] Trying to download "https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440".
biodb.DEBUG[2025-08-20 20:32:21.455][getUrlContent] Use RCurl for downloading content of URL https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440.
biodb.INFO [2025-08-20 20:32:22.769][biodb::testThat]
biodb.INFO [2025-08-20 20:32:22.771][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2025-08-20 20:32:22.773][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-20 20:32:22.775][biodb::testThat]
biodb.DEBUG[2025-08-20 20:32:23.143][getUrlContent] Use RCurl for downloading content of URL https://www.ebi.ac.uk/chebi/displayImage.do?defaultImage=true&imageIndex=0&chebiId=15440&dimensions=400.
biodb.TRACE[2025-08-20 20:32:23.496][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-20 20:32:23.498][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-20 20:32:23.500][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:23.502][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:23.504][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:23.507][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:23.509][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:23.511][ef$get] fields variable is a list.
biodb.INFO [2025-08-20 20:32:23.515][biodb::testThat]
biodb.INFO [2025-08-20 20:32:23.517][biodb::testThat] Running test function  test.searchCompound  (" We can search for a compound ").
biodb.INFO [2025-08-20 20:32:23.519][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-20 20:32:23.521][biodb::testThat]
biodb.TRACE[2025-08-20 20:32:23.538][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-20 20:32:23.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-20 20:32:23.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:23.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:23.544][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-20 20:32:23.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-20 20:32:23.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:23.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:23.549][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-20 20:32:23.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-20 20:32:23.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:23.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:23.635][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-20 20:32:23.638][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-20 20:32:23.639][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-08-20 20:32:23.641][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-20 20:32:23.642][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2025-08-20 20:32:23.700][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-20 20:32:23.703][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-20 20:32:23.709][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-08-20 20:32:23.710][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-20 20:32:23.712][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.TRACE[2025-08-20 20:32:23.724][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-20 20:32:23.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-20 20:32:23.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:23.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:23.731][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:23.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:23.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:23.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:23.735][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:23.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:23.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:23.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:23.739][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:23.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:23.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:23.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:23.743][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:23.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:23.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:23.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:23.747][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:23.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:23.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:23.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:23.757][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-20 20:32:23.760][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-20 20:32:23.761][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2025-08-20 20:32:23.762][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-20 20:32:23.764][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2025-08-20 20:32:23.766][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:23.767][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:23.768][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:23.772][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:23.773][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:23.774][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:23.775][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:23.776][private$loadEntries] Creating entries from ids [1]: "192288".
biodb.DEBUG[2025-08-20 20:32:23.826][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-20 20:32:23.828][cch$loadFileContent] Trying to load 1 files from cache: [1]: "192288".
biodb.TRACE[2025-08-20 20:32:23.829][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-20 20:32:23.831][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/192288.xml".
biodb.DEBUG[2025-08-20 20:32:23.832][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-20 20:32:23.833][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-20 20:32:23.834][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-20 20:32:23.836][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:23.837][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:23.838][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:23.842][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:23.843][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:23.844][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:23.845][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:23.847][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:23.848][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:23.849][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:23.850][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:23.851][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:23.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:23.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:23.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:23.855][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-20 20:32:23.856][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-20 20:32:23.857][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:23.858][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:23.859][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-20 20:32:23.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-20 20:32:23.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:23.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:23.863][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-20 20:32:23.864][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-20 20:32:23.865][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:23.866][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:23.867][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-20 20:32:23.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-20 20:32:23.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:23.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:23.871][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-20 20:32:23.872][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-20 20:32:23.873][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:23.874][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:23.875][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-20 20:32:23.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-20 20:32:23.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:23.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:23.879][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-20 20:32:23.880][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-20 20:32:23.881][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:23.882][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:23.883][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-20 20:32:23.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-20 20:32:23.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:23.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:23.888][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-20 20:32:23.889][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-20 20:32:23.894][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:23.895][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:23.896][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-20 20:32:23.897][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:23.898][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:23.899][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:23.900][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-20 20:32:23.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:23.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:23.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:23.904][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:23.905][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:23.906][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:23.907][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:23.908][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:23.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:23.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:23.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:23.912][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-20 20:32:23.913][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-20 20:32:23.914][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:23.915][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:23.916][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-20 20:32:23.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-20 20:32:23.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:23.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:23.920][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-20 20:32:23.921][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-20 20:32:23.922][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:23.923][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:23.924][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-20 20:32:23.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-20 20:32:23.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:23.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:23.928][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-20 20:32:23.929][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-20 20:32:23.930][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:23.931][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:23.932][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-20 20:32:23.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-20 20:32:23.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:23.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:23.936][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:23.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:23.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:23.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:23.940][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:23.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:23.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:23.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:23.944][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:23.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:23.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:23.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:23.948][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:23.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:23.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:23.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:23.951][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:23.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:23.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:23.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:23.955][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:23.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:23.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:23.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:23.959][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:23.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:23.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:23.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:23.963][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:23.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:23.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:23.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:23.967][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:23.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:23.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:23.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:23.971][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:23.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:23.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:23.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:23.975][self$createEntryFromContent] Accession numbers: 192288.
biodb.TRACE[2025-08-20 20:32:23.988][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:23.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:23.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:23.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:23.992][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:23.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:23.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:23.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:23.996][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:23.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:23.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:23.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:24.000][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-20 20:32:24.003][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-20 20:32:24.005][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2025-08-20 20:32:24.006][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-20 20:32:24.008][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2025-08-20 20:32:24.023][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:24.024][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:24.024][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:24.029][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:24.030][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:24.031][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:24.031][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:24.033][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:24.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:24.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.037][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:24.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:24.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.040][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:24.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:24.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:24.044][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:24.045][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:24.046][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:24.050][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:24.051][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:24.052][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:24.053][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:24.054][private$loadEntries] Creating entries from ids [1]: "209892".
biodb.DEBUG[2025-08-20 20:32:24.055][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-20 20:32:24.056][cch$loadFileContent] Trying to load 1 files from cache: [1]: "209892".
biodb.TRACE[2025-08-20 20:32:24.058][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-20 20:32:24.059][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/209892.xml".
biodb.DEBUG[2025-08-20 20:32:24.060][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-20 20:32:24.062][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-20 20:32:24.063][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-20 20:32:24.064][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:24.065][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:24.066][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:24.071][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:24.071][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:24.072][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:24.077][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:24.079][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:24.080][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:24.081][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.082][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.083][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:24.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:24.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.087][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-20 20:32:24.088][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-20 20:32:24.089][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.090][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.091][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-20 20:32:24.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-20 20:32:24.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.095][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-20 20:32:24.096][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-20 20:32:24.097][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.098][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.099][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-20 20:32:24.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-20 20:32:24.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.103][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-20 20:32:24.104][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-20 20:32:24.105][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.106][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.107][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-20 20:32:24.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-20 20:32:24.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.111][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-20 20:32:24.112][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-20 20:32:24.113][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.114][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.115][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-20 20:32:24.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-20 20:32:24.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.119][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-20 20:32:24.120][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-20 20:32:24.121][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.122][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.123][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-20 20:32:24.124][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:24.125][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.126][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.127][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-20 20:32:24.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:24.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.131][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:24.132][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:24.133][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.134][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.135][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:24.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:24.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.139][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-20 20:32:24.140][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-20 20:32:24.141][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.142][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.144][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-20 20:32:24.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-20 20:32:24.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.147][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-20 20:32:24.148][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-20 20:32:24.149][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.150][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.151][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-20 20:32:24.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-20 20:32:24.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.155][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-20 20:32:24.156][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-20 20:32:24.157][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.158][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.159][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-20 20:32:24.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-20 20:32:24.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.163][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:24.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:24.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.171][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:24.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:24.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.175][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:24.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:24.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.179][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:24.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:24.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.183][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:24.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:24.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.187][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:24.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:24.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.190][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:24.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:24.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.194][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:24.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:24.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.198][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:24.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:24.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.202][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:24.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:24.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:24.206][self$createEntryFromContent] Accession numbers: 209892.
biodb.TRACE[2025-08-20 20:32:24.207][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:24.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:24.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.211][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:24.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:24.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.214][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:24.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:24.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:24.246][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-20 20:32:24.250][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-20 20:32:24.252][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-08-20 20:32:24.253][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-20 20:32:24.255][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2025-08-20 20:32:24.259][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:24.260][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:24.261][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:24.265][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:24.267][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:24.268][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:24.269][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:24.270][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:24.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:24.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.274][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:24.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:24.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.293][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:24.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:24.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:24.297][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:24.298][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:24.299][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:24.304][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:24.305][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:24.306][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:24.307][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:24.308][private$loadEntries] Creating entries from ids [1]: "26747".
biodb.DEBUG[2025-08-20 20:32:24.309][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-20 20:32:24.311][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26747".
biodb.TRACE[2025-08-20 20:32:24.312][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-20 20:32:24.314][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26747.xml".
biodb.DEBUG[2025-08-20 20:32:24.315][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-20 20:32:24.316][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-20 20:32:24.318][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-20 20:32:24.319][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:24.320][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:24.321][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:24.326][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:24.327][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:24.328][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:24.329][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:24.331][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:24.332][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:24.333][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.334][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.336][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:24.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:24.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.340][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-20 20:32:24.341][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-20 20:32:24.342][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.343][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.344][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-20 20:32:24.346][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-20 20:32:24.347][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.348][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.349][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-20 20:32:24.350][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-20 20:32:24.351][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.352][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.353][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-20 20:32:24.355][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-20 20:32:24.356][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.356][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.358][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-20 20:32:24.359][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-20 20:32:24.360][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.361][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.362][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-20 20:32:24.363][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:24.364][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.365][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.366][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:24.367][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:24.368][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.369][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.370][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-20 20:32:24.371][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-20 20:32:24.372][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.373][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.374][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-20 20:32:24.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-20 20:32:24.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.378][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-20 20:32:24.379][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-20 20:32:24.380][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.381][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.383][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-20 20:32:24.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-20 20:32:24.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.387][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-20 20:32:24.388][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-20 20:32:24.389][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.422][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.425][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:24.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:24.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.429][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:24.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:24.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.433][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:24.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:24.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.437][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:24.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:24.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.441][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:24.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:24.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.445][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:24.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:24.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.449][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:24.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:24.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.453][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:24.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:24.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.457][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:24.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:24.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.461][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:24.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:24.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:24.465][self$createEntryFromContent] Accession numbers: 26747.
biodb.TRACE[2025-08-20 20:32:24.466][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:24.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:24.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.470][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:24.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:24.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.474][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:24.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:24.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.478][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:24.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:24.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.482][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:24.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:24.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:24.486][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:24.487][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:24.488][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:24.493][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:24.494][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:24.495][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:24.495][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:24.497][private$loadEntries] Creating entries from ids [1]: "59285".
biodb.DEBUG[2025-08-20 20:32:24.498][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-20 20:32:24.499][cch$loadFileContent] Trying to load 1 files from cache: [1]: "59285".
biodb.TRACE[2025-08-20 20:32:24.500][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-20 20:32:24.502][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/59285.xml".
biodb.DEBUG[2025-08-20 20:32:24.503][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-20 20:32:24.505][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-20 20:32:24.506][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-20 20:32:24.507][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:24.508][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:24.509][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:24.514][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:24.515][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:24.516][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:24.517][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:24.519][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:24.520][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:24.526][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.527][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.528][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:24.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:24.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.532][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-20 20:32:24.533][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-20 20:32:24.534][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.535][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.537][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-20 20:32:24.538][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-20 20:32:24.539][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.539][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.541][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-20 20:32:24.542][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-20 20:32:24.543][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.544][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.545][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-20 20:32:24.546][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-20 20:32:24.547][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.548][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.549][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-20 20:32:24.550][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-20 20:32:24.551][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.552][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.553][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-20 20:32:24.554][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:24.555][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.556][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.557][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:24.558][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:24.559][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.560][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.561][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-20 20:32:24.562][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-20 20:32:24.563][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.564][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.566][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-20 20:32:24.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-20 20:32:24.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.570][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-20 20:32:24.571][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-20 20:32:24.572][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.573][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.575][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-20 20:32:24.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-20 20:32:24.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.579][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-20 20:32:24.580][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-20 20:32:24.581][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.582][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.583][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:24.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:24.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.587][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:24.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:24.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.591][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:24.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:24.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.595][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:24.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:24.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.599][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:24.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:24.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.602][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:24.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:24.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.606][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:24.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:24.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.610][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:24.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:24.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.614][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:24.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:24.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.618][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:24.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:24.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:24.626][self$createEntryFromContent] Accession numbers: 59285.
biodb.TRACE[2025-08-20 20:32:24.627][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:24.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:24.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.631][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:24.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:24.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.635][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:24.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:24.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.639][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:24.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:24.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.643][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:24.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:24.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:24.647][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:24.647][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:24.648][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:24.653][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:24.654][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:24.654][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:24.655][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:24.656][private$loadEntries] Creating entries from ids [1]: "75174".
biodb.DEBUG[2025-08-20 20:32:24.657][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-20 20:32:24.659][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75174".
biodb.TRACE[2025-08-20 20:32:24.660][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-20 20:32:24.662][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75174.xml".
biodb.DEBUG[2025-08-20 20:32:24.663][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-20 20:32:24.664][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-20 20:32:24.665][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-20 20:32:24.667][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:24.668][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:24.668][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:24.673][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:24.674][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:24.675][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:24.675][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:24.678][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:24.679][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:24.680][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.681][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.682][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:24.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:24.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.686][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-20 20:32:24.687][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-20 20:32:24.688][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.689][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.690][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-20 20:32:24.691][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-20 20:32:24.692][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.693][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.694][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-20 20:32:24.695][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-20 20:32:24.696][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.697][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.698][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-20 20:32:24.699][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-20 20:32:24.700][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.701][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.702][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-20 20:32:24.703][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-20 20:32:24.704][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.705][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.706][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-20 20:32:24.707][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:24.708][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.709][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.710][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:24.711][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:24.712][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.713][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.714][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-20 20:32:24.715][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-20 20:32:24.716][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.721][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.723][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-20 20:32:24.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-20 20:32:24.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.727][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-20 20:32:24.728][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-20 20:32:24.729][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.730][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.731][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-20 20:32:24.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-20 20:32:24.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.735][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-20 20:32:24.736][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-20 20:32:24.737][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.738][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.739][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:24.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:24.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.743][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:24.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:24.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.747][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:24.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:24.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.751][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:24.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:24.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.755][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:24.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:24.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.759][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:24.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:24.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.763][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:24.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:24.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.767][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:24.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:24.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.770][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:24.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:24.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.774][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:24.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:24.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:24.778][self$createEntryFromContent] Accession numbers: 75174.
biodb.TRACE[2025-08-20 20:32:24.779][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:24.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:24.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.783][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:24.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:24.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.787][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:24.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:24.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.791][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:24.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:24.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.795][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:24.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:24.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:24.798][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:24.799][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:24.800][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:24.805][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:24.805][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:24.806][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:24.807][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:24.808][private$loadEntries] Creating entries from ids [1]: "15441".
biodb.DEBUG[2025-08-20 20:32:24.809][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-20 20:32:24.811][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15441".
biodb.TRACE[2025-08-20 20:32:24.812][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-20 20:32:24.818][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15441.xml".
biodb.DEBUG[2025-08-20 20:32:24.819][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-20 20:32:24.820][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-20 20:32:24.821][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-20 20:32:24.823][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:24.824][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:24.824][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:24.829][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:24.830][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:24.830][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:24.831][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:24.834][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:24.835][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:24.836][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.836][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.838][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:24.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:24.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.842][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-20 20:32:24.843][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-20 20:32:24.844][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.845][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.846][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-20 20:32:24.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-20 20:32:24.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.850][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-20 20:32:24.851][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-20 20:32:24.852][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.853][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.854][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-20 20:32:24.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-20 20:32:24.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.858][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-20 20:32:24.859][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-20 20:32:24.860][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.861][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.862][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-20 20:32:24.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-20 20:32:24.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.866][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-20 20:32:24.867][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-20 20:32:24.868][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.869][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.870][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-20 20:32:24.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-20 20:32:24.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.874][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-20 20:32:24.875][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-20 20:32:24.876][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.877][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.878][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-20 20:32:24.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-20 20:32:24.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.882][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-20 20:32:24.883][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:24.884][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.885][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.886][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-20 20:32:24.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:24.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.890][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:24.891][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:24.892][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.893][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.894][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:24.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:24.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.898][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-20 20:32:24.899][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-20 20:32:24.900][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.901][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.902][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-20 20:32:24.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-20 20:32:24.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.906][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-20 20:32:24.907][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-20 20:32:24.908][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.913][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.914][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-20 20:32:24.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-20 20:32:24.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.918][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-20 20:32:24.919][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-20 20:32:24.920][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.921][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.922][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-20 20:32:24.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-20 20:32:24.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.926][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:24.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:24.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.930][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:24.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:24.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.934][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:24.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:24.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.938][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:24.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:24.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.942][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:24.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:24.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.946][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:24.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:24.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.949][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:24.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:24.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.953][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:24.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:24.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.957][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:24.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:24.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.961][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:24.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:24.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:24.965][self$createEntryFromContent] Accession numbers: 15441.
biodb.TRACE[2025-08-20 20:32:24.966][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:24.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:24.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.970][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:24.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:24.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:24.974][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:24.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:24.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:24.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:24.978][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:24.978][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:24.979][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:24.984][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:24.985][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:24.986][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:24.986][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:24.988][private$loadEntries] Creating entries from ids [1]: "15442".
biodb.DEBUG[2025-08-20 20:32:24.989][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-20 20:32:24.990][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15442".
biodb.TRACE[2025-08-20 20:32:24.991][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-20 20:32:24.993][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15442.xml".
biodb.DEBUG[2025-08-20 20:32:24.995][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-20 20:32:24.996][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-20 20:32:24.997][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-20 20:32:24.999][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:25.000][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:25.001][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:25.006][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:25.013][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:25.015][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:25.016][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:25.019][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:25.020][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:25.021][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.022][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.023][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:25.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:25.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.027][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-20 20:32:25.029][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-20 20:32:25.030][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.031][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.032][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-20 20:32:25.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-20 20:32:25.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.036][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-20 20:32:25.038][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-20 20:32:25.039][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.039][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.041][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-20 20:32:25.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-20 20:32:25.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.046][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-20 20:32:25.047][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-20 20:32:25.048][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.049][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.050][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-20 20:32:25.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-20 20:32:25.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.054][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-20 20:32:25.055][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-20 20:32:25.056][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.057][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.059][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-20 20:32:25.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-20 20:32:25.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.063][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-20 20:32:25.064][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-20 20:32:25.065][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.066][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.068][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-20 20:32:25.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-20 20:32:25.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.072][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-20 20:32:25.073][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:25.074][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.075][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.077][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-20 20:32:25.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:25.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.081][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:25.082][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:25.083][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.084][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.085][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:25.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:25.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.090][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-20 20:32:25.091][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-20 20:32:25.092][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.093][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.094][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-20 20:32:25.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-20 20:32:25.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.098][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-20 20:32:25.100][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-20 20:32:25.101][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.102][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.103][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-20 20:32:25.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-20 20:32:25.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.107][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-20 20:32:25.108][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-20 20:32:25.109][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.110][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.112][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-20 20:32:25.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-20 20:32:25.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.122][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:25.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:25.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.127][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:25.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:25.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.131][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:25.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:25.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.135][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:25.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:25.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.139][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:25.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:25.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.144][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:25.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:25.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.148][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:25.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:25.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.152][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:25.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:25.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.157][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:25.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:25.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.161][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:25.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:25.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:25.165][self$createEntryFromContent] Accession numbers: 15442.
biodb.TRACE[2025-08-20 20:32:25.166][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:25.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:25.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.170][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:25.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:25.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.175][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:25.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:25.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:25.179][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:25.180][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:25.181][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:25.186][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:25.187][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:25.188][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:25.189][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:25.190][private$loadEntries] Creating entries from ids [1]: "57310".
biodb.DEBUG[2025-08-20 20:32:25.191][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-20 20:32:25.193][cch$loadFileContent] Trying to load 1 files from cache: [1]: "57310".
biodb.TRACE[2025-08-20 20:32:25.194][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-20 20:32:25.196][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/57310.xml".
biodb.DEBUG[2025-08-20 20:32:25.197][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-20 20:32:25.198][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-20 20:32:25.200][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-20 20:32:25.202][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:25.202][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:25.203][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:25.209][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:25.210][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:25.211][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:25.212][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:25.214][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:25.215][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:25.216][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.217][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.219][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:25.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:25.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.223][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-20 20:32:25.232][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-20 20:32:25.234][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.236][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.238][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-20 20:32:25.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-20 20:32:25.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.245][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-20 20:32:25.247][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-20 20:32:25.248][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.250][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.252][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-20 20:32:25.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-20 20:32:25.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.257][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-20 20:32:25.259][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-20 20:32:25.260][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.262][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.264][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-20 20:32:25.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-20 20:32:25.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.272][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-20 20:32:25.273][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-20 20:32:25.275][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.276][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.277][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-20 20:32:25.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-20 20:32:25.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.282][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-20 20:32:25.283][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-20 20:32:25.284][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.285][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.286][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-20 20:32:25.287][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:25.288][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.289][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.291][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-20 20:32:25.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:25.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.295][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:25.296][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:25.297][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.298][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.300][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:25.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:25.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.304][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-20 20:32:25.305][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-20 20:32:25.306][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.307][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.309][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-20 20:32:25.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-20 20:32:25.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.313][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-20 20:32:25.314][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-20 20:32:25.315][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.316][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.318][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-20 20:32:25.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-20 20:32:25.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.322][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-20 20:32:25.323][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-20 20:32:25.324][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.325][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.326][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-20 20:32:25.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-20 20:32:25.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.331][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:25.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:25.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.335][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:25.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:25.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.339][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:25.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:25.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.343][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:25.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:25.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.354][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:25.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:25.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.359][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:25.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:25.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.364][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:25.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:25.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.368][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:25.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:25.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.372][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:25.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:25.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.376][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:25.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:25.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:25.380][self$createEntryFromContent] Accession numbers: 57310.
biodb.TRACE[2025-08-20 20:32:25.381][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:25.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:25.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.385][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:25.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:25.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.389][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:25.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:25.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:25.393][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:25.394][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:25.395][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:25.400][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:25.400][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:25.401][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:25.402][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:25.403][private$loadEntries] Creating entries from ids [1]: "66216".
biodb.DEBUG[2025-08-20 20:32:25.404][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-20 20:32:25.406][cch$loadFileContent] Trying to load 1 files from cache: [1]: "66216".
biodb.TRACE[2025-08-20 20:32:25.407][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-20 20:32:25.409][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66216.xml".
biodb.DEBUG[2025-08-20 20:32:25.410][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-20 20:32:25.411][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-20 20:32:25.413][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-20 20:32:25.414][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:25.415][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:25.416][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:25.420][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:25.421][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:25.422][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:25.423][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:25.426][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:25.427][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:25.428][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.428][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.430][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:25.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:25.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.434][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-20 20:32:25.435][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-20 20:32:25.436][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.437][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.438][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-20 20:32:25.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-20 20:32:25.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.442][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-20 20:32:25.443][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-20 20:32:25.444][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.445][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.446][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-20 20:32:25.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-20 20:32:25.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.450][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-20 20:32:25.457][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-20 20:32:25.458][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.459][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.460][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-20 20:32:25.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-20 20:32:25.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.464][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-20 20:32:25.465][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-20 20:32:25.466][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.467][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.468][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-20 20:32:25.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-20 20:32:25.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.472][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-20 20:32:25.473][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-20 20:32:25.474][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.475][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.476][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-20 20:32:25.477][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:25.478][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.479][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.481][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-20 20:32:25.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:25.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.485][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:25.486][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:25.487][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.487][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.489][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:25.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:25.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.493][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-20 20:32:25.494][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-20 20:32:25.495][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.495][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.497][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-20 20:32:25.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-20 20:32:25.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.501][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-20 20:32:25.502][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-20 20:32:25.503][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.504][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.505][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-20 20:32:25.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-20 20:32:25.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.509][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-20 20:32:25.510][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-20 20:32:25.511][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.512][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.513][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-20 20:32:25.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-20 20:32:25.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.517][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:25.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:25.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.521][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:25.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:25.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.525][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:25.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:25.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.529][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:25.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:25.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.532][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:25.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:25.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.536][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:25.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:25.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.540][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:25.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:25.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.544][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:25.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:25.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.552][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:25.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:25.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.557][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:25.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:25.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:25.560][self$createEntryFromContent] Accession numbers: 66216.
biodb.TRACE[2025-08-20 20:32:25.562][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:25.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:25.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.565][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:25.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:25.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.569][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:25.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:25.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:25.573][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:25.574][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:25.575][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:25.579][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:25.580][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:25.581][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:25.582][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:25.583][private$loadEntries] Creating entries from ids [1]: "70860".
biodb.DEBUG[2025-08-20 20:32:25.584][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-20 20:32:25.586][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70860".
biodb.TRACE[2025-08-20 20:32:25.587][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-20 20:32:25.588][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70860.xml".
biodb.DEBUG[2025-08-20 20:32:25.590][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-20 20:32:25.591][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-20 20:32:25.592][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-20 20:32:25.593][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:25.594][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:25.595][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:25.600][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:25.600][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:25.601][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:25.602][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:25.605][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:25.606][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:25.607][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.608][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.609][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:25.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:25.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.613][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-20 20:32:25.614][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-20 20:32:25.615][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.616][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.617][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-20 20:32:25.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-20 20:32:25.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.621][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-20 20:32:25.622][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-20 20:32:25.623][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.624][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.625][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-20 20:32:25.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-20 20:32:25.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.629][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-20 20:32:25.630][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-20 20:32:25.631][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.632][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.633][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-20 20:32:25.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-20 20:32:25.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.637][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-20 20:32:25.638][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-20 20:32:25.639][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.640][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.641][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-20 20:32:25.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-20 20:32:25.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.650][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-20 20:32:25.651][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-20 20:32:25.652][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.653][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.654][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-20 20:32:25.655][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:25.656][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.657][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.658][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-20 20:32:25.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:25.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.662][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:25.663][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:25.664][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.665][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.667][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:25.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:25.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.671][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-20 20:32:25.672][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-20 20:32:25.673][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.674][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.675][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-20 20:32:25.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-20 20:32:25.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.679][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-20 20:32:25.680][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-20 20:32:25.681][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.682][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.683][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-20 20:32:25.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-20 20:32:25.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.687][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-20 20:32:25.688][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-20 20:32:25.689][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.690][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.691][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-20 20:32:25.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-20 20:32:25.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.695][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:25.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:25.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.699][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:25.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:25.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.703][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:25.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:25.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.707][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:25.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:25.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.711][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:25.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:25.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.715][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:25.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:25.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.719][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:25.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:25.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.723][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:25.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:25.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.727][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:25.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:25.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.731][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:25.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:25.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:25.735][self$createEntryFromContent] Accession numbers: 70860.
biodb.TRACE[2025-08-20 20:32:25.736][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:25.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:25.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.740][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:25.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:25.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.748][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:25.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:25.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:25.752][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:25.753][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:25.754][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:25.758][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:25.759][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:25.760][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:25.761][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:25.762][private$loadEntries] Creating entries from ids [1]: "70861".
biodb.DEBUG[2025-08-20 20:32:25.763][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-20 20:32:25.765][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70861".
biodb.TRACE[2025-08-20 20:32:25.766][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-20 20:32:25.768][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70861.xml".
biodb.DEBUG[2025-08-20 20:32:25.769][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-20 20:32:25.770][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-20 20:32:25.772][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-20 20:32:25.773][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:25.774][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:25.775][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:25.780][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:25.781][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:25.781][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:25.782][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:25.785][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:25.786][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:25.787][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.788][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.789][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:25.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:25.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.793][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-20 20:32:25.794][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-20 20:32:25.795][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.796][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.797][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-20 20:32:25.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-20 20:32:25.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.802][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-20 20:32:25.803][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-20 20:32:25.804][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.805][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.806][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-20 20:32:25.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-20 20:32:25.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.810][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-20 20:32:25.811][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-20 20:32:25.812][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.813][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.814][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-20 20:32:25.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-20 20:32:25.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.818][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-20 20:32:25.819][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-20 20:32:25.820][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.821][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.823][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-20 20:32:25.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-20 20:32:25.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.827][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-20 20:32:25.828][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-20 20:32:25.829][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.830][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.831][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-20 20:32:25.832][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:25.833][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.834][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.835][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-20 20:32:25.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:25.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.839][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:25.840][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:25.845][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.846][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.848][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:25.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:25.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.852][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-20 20:32:25.853][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-20 20:32:25.854][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.855][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.856][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-20 20:32:25.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-20 20:32:25.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.860][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-20 20:32:25.861][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-20 20:32:25.862][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.863][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.864][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-20 20:32:25.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-20 20:32:25.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.868][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-20 20:32:25.869][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-20 20:32:25.870][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.871][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.872][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-20 20:32:25.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-20 20:32:25.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.877][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:25.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:25.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.880][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:25.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:25.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.884][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:25.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:25.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.888][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:25.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:25.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.892][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:25.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:25.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.896][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:25.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:25.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.900][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:25.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:25.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.905][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:25.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:25.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.908][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:25.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:25.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.913][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:25.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:25.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:25.916][self$createEntryFromContent] Accession numbers: 70861.
biodb.TRACE[2025-08-20 20:32:25.918][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:25.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:25.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.922][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:25.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:25.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.926][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:25.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:25.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:25.930][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:25.930][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:25.931][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:25.936][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:25.937][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:25.938][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:25.943][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:25.945][private$loadEntries] Creating entries from ids [1]: "78662".
biodb.DEBUG[2025-08-20 20:32:25.946][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-20 20:32:25.947][cch$loadFileContent] Trying to load 1 files from cache: [1]: "78662".
biodb.TRACE[2025-08-20 20:32:25.949][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-20 20:32:25.950][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/78662.xml".
biodb.DEBUG[2025-08-20 20:32:25.951][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-20 20:32:25.952][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-20 20:32:25.954][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-20 20:32:25.955][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:25.956][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:25.957][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:25.961][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:25.962][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:25.963][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:25.964][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:25.967][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:25.968][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:25.969][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.969][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.971][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:25.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:25.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.975][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-20 20:32:25.976][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-20 20:32:25.977][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.978][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.979][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-20 20:32:25.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-20 20:32:25.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.983][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-20 20:32:25.984][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-20 20:32:25.985][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.986][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.987][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-20 20:32:25.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-20 20:32:25.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.991][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-20 20:32:25.992][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-20 20:32:25.993][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.994][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.995][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-20 20:32:25.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-20 20:32:25.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:25.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:25.999][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-20 20:32:26.000][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-20 20:32:26.001][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.002][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.003][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-20 20:32:26.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-20 20:32:26.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.007][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-20 20:32:26.008][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-20 20:32:26.009][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.010][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.012][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-20 20:32:26.013][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:26.013][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.014][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.016][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-20 20:32:26.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:26.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.020][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:26.021][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:26.022][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.023][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.024][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:26.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:26.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.028][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-20 20:32:26.029][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-20 20:32:26.030][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.031][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.032][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-20 20:32:26.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-20 20:32:26.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.040][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-20 20:32:26.042][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-20 20:32:26.043][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.044][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.045][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-20 20:32:26.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-20 20:32:26.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.049][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-20 20:32:26.050][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-20 20:32:26.051][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.052][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.053][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-20 20:32:26.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-20 20:32:26.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.058][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:26.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:26.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.062][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:26.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:26.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.065][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:26.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:26.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.069][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:26.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:26.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.073][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:26.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:26.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.077][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:26.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:26.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.081][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:26.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:26.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.085][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:26.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:26.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.089][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:26.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:26.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.093][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:26.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:26.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:26.097][self$createEntryFromContent] Accession numbers: 78662.
biodb.TRACE[2025-08-20 20:32:26.098][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:26.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:26.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.102][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:26.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:26.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.106][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:26.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:26.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:26.109][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:26.110][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:26.111][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:26.115][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:26.116][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:26.117][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:26.118][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:26.119][private$loadEntries] Creating entries from ids [1]: "85084".
biodb.DEBUG[2025-08-20 20:32:26.120][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-20 20:32:26.122][cch$loadFileContent] Trying to load 1 files from cache: [1]: "85084".
biodb.TRACE[2025-08-20 20:32:26.123][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-20 20:32:26.125][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85084.xml".
biodb.DEBUG[2025-08-20 20:32:26.126][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-20 20:32:26.127][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-20 20:32:26.128][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-20 20:32:26.130][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:26.131][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:26.131][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:26.140][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:26.141][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:26.142][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:26.143][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:26.145][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:26.146][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:26.147][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.148][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.149][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:26.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:26.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.153][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-20 20:32:26.154][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-20 20:32:26.155][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.156][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.157][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-20 20:32:26.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-20 20:32:26.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.161][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-20 20:32:26.163][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-20 20:32:26.163][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.164][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.166][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-20 20:32:26.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-20 20:32:26.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.170][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-20 20:32:26.171][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-20 20:32:26.172][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.172][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.174][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-20 20:32:26.175][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-20 20:32:26.176][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.177][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.178][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-20 20:32:26.179][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-20 20:32:26.180][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.181][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.182][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-20 20:32:26.183][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:26.184][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.185][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.186][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-20 20:32:26.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:26.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.190][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:26.191][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:26.192][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.193][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.194][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:26.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:26.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.198][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-20 20:32:26.199][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-20 20:32:26.200][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.201][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.202][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-20 20:32:26.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-20 20:32:26.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.206][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-20 20:32:26.207][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-20 20:32:26.208][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.209][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.210][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-20 20:32:26.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-20 20:32:26.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.214][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-20 20:32:26.215][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-20 20:32:26.216][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.217][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.218][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:26.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:26.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.222][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:26.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:26.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.226][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:26.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:26.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.235][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:26.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:26.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.239][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:26.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:26.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.243][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:26.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:26.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.246][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:26.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:26.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.251][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:26.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:26.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.254][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:26.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:26.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.258][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:26.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:26.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:26.262][self$createEntryFromContent] Accession numbers: 85084.
biodb.TRACE[2025-08-20 20:32:26.263][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:26.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:26.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.267][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:26.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:26.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.271][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:26.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:26.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:26.275][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:26.276][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:26.277][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:26.281][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:26.282][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:26.283][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:26.284][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:26.285][private$loadEntries] Creating entries from ids [1]: "85086".
biodb.DEBUG[2025-08-20 20:32:26.286][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-20 20:32:26.288][cch$loadFileContent] Trying to load 1 files from cache: [1]: "85086".
biodb.TRACE[2025-08-20 20:32:26.289][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-20 20:32:26.291][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85086.xml".
biodb.DEBUG[2025-08-20 20:32:26.292][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-20 20:32:26.293][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-20 20:32:26.294][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-20 20:32:26.296][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:26.297][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:26.298][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:26.302][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:26.303][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:26.304][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:26.305][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:26.307][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:26.308][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:26.309][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.310][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.311][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:26.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:26.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.316][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-20 20:32:26.317][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-20 20:32:26.318][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.318][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.320][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-20 20:32:26.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-20 20:32:26.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.324][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-20 20:32:26.330][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-20 20:32:26.331][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.332][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.333][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-20 20:32:26.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-20 20:32:26.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.337][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-20 20:32:26.338][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-20 20:32:26.339][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.340][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.341][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-20 20:32:26.343][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-20 20:32:26.344][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.344][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.346][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-20 20:32:26.347][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-20 20:32:26.348][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.349][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.350][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-20 20:32:26.351][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:26.352][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.353][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.354][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-20 20:32:26.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:26.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.358][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:26.359][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:26.360][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.361][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.363][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:26.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:26.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.367][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-20 20:32:26.368][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-20 20:32:26.369][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.370][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.371][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-20 20:32:26.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-20 20:32:26.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.375][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-20 20:32:26.376][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-20 20:32:26.377][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.378][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.379][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-20 20:32:26.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-20 20:32:26.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.383][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-20 20:32:26.384][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-20 20:32:26.385][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.386][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.388][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:26.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:26.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.392][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:26.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:26.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.396][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:26.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:26.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.399][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:26.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:26.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.403][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:26.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:26.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.407][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:26.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:26.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.411][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:26.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:26.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.415][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:26.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:26.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.419][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:26.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:26.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.427][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:26.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:26.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:26.431][self$createEntryFromContent] Accession numbers: 85086.
biodb.TRACE[2025-08-20 20:32:26.432][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:26.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:26.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.436][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:26.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:26.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.440][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:26.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:26.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:26.444][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:26.445][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:26.446][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:26.450][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:26.451][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:26.452][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:26.453][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:26.454][private$loadEntries] Creating entries from ids [1]: "88123".
biodb.DEBUG[2025-08-20 20:32:26.455][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-20 20:32:26.456][cch$loadFileContent] Trying to load 1 files from cache: [1]: "88123".
biodb.TRACE[2025-08-20 20:32:26.458][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-20 20:32:26.459][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/88123.xml".
biodb.DEBUG[2025-08-20 20:32:26.460][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-20 20:32:26.462][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-20 20:32:26.463][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-20 20:32:26.464][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:26.465][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:26.466][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:26.471][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:26.471][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:26.472][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:26.473][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:26.476][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:26.477][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:26.478][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.479][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.480][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:26.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:26.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.484][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-20 20:32:26.485][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-20 20:32:26.486][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.487][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.488][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-20 20:32:26.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-20 20:32:26.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.492][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-20 20:32:26.493][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-20 20:32:26.494][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.495][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.496][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-20 20:32:26.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-20 20:32:26.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.500][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-20 20:32:26.501][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-20 20:32:26.502][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.503][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.504][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-20 20:32:26.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-20 20:32:26.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.508][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-20 20:32:26.509][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-20 20:32:26.510][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.511][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.512][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-20 20:32:26.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-20 20:32:26.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.516][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-20 20:32:26.517][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-20 20:32:26.526][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.527][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.528][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-20 20:32:26.529][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:26.530][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.531][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.533][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-20 20:32:26.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:26.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.536][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:26.538][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:26.538][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.539][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.541][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:26.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:26.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.545][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-20 20:32:26.546][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-20 20:32:26.547][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.548][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.549][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-20 20:32:26.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-20 20:32:26.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.553][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-20 20:32:26.554][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-20 20:32:26.555][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.556][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.557][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-20 20:32:26.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-20 20:32:26.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.561][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-20 20:32:26.562][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-20 20:32:26.563][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.564][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.565][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-20 20:32:26.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-20 20:32:26.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.569][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:26.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:26.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.573][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:26.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:26.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.577][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:26.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:26.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.581][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:26.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:26.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.585][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:26.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:26.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.589][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:26.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:26.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.593][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:26.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:26.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.597][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:26.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:26.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.601][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:26.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:26.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.605][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:26.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:26.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:26.609][self$createEntryFromContent] Accession numbers: 88123.
biodb.TRACE[2025-08-20 20:32:26.610][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:26.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:26.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.614][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:26.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:26.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.622][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:26.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:26.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:26.627][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:26.628][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:26.628][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:26.633][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:26.634][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:26.635][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:26.636][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:26.637][private$loadEntries] Creating entries from ids [1]: "134117".
biodb.DEBUG[2025-08-20 20:32:26.638][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-20 20:32:26.639][cch$loadFileContent] Trying to load 1 files from cache: [1]: "134117".
biodb.TRACE[2025-08-20 20:32:26.640][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-20 20:32:26.642][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/134117.xml".
biodb.DEBUG[2025-08-20 20:32:26.643][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-20 20:32:26.644][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-20 20:32:26.646][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-20 20:32:26.647][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:26.648][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:26.649][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:26.653][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:26.654][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:26.655][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:26.656][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:26.658][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:26.660][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:26.660][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.661][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.667][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:26.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:26.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.673][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-20 20:32:26.674][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-20 20:32:26.675][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.676][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.678][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-20 20:32:26.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-20 20:32:26.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.683][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-20 20:32:26.684][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-20 20:32:26.685][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.686][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.688][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-20 20:32:26.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-20 20:32:26.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.692][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-20 20:32:26.693][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-20 20:32:26.695][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.696][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.697][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-20 20:32:26.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-20 20:32:26.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.702][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-20 20:32:26.703][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-20 20:32:26.704][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.705][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.706][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-20 20:32:26.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-20 20:32:26.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.711][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-20 20:32:26.712][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-20 20:32:26.713][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.714][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.715][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-20 20:32:26.717][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:26.718][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.719][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.720][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-20 20:32:26.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:26.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.725][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:26.726][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:26.727][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.728][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.729][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:26.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:26.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.751][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-20 20:32:26.753][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-20 20:32:26.754][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.755][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.757][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-20 20:32:26.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-20 20:32:26.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.761][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-20 20:32:26.762][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-20 20:32:26.763][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.764][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.766][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-20 20:32:26.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-20 20:32:26.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.770][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-20 20:32:26.771][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-20 20:32:26.772][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.773][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.775][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-20 20:32:26.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-20 20:32:26.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.779][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:26.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:26.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.784][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:26.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:26.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.788][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:26.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:26.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.792][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:26.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:26.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.796][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:26.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:26.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.800][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:26.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:26.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.803][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:26.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:26.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.808][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:26.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:26.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.811][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:26.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:26.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.815][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:26.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:26.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:26.819][self$createEntryFromContent] Accession numbers: 134117.
biodb.TRACE[2025-08-20 20:32:26.820][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:26.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:26.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.824][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:26.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:26.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.828][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:26.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:26.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:26.832][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:26.833][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:26.834][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:26.839][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:26.840][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:26.840][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:26.841][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:26.843][private$loadEntries] Creating entries from ids [1]: "138307".
biodb.DEBUG[2025-08-20 20:32:26.844][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-20 20:32:26.850][cch$loadFileContent] Trying to load 1 files from cache: [1]: "138307".
biodb.TRACE[2025-08-20 20:32:26.851][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-20 20:32:26.853][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/138307.xml".
biodb.DEBUG[2025-08-20 20:32:26.854][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-20 20:32:26.855][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-20 20:32:26.857][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-20 20:32:26.858][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:26.859][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:26.860][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:26.865][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:26.865][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:26.866][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:26.867][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:26.870][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:26.871][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:26.872][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.873][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.874][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:26.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:26.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.878][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-20 20:32:26.879][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-20 20:32:26.880][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.881][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.882][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-20 20:32:26.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-20 20:32:26.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.886][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-20 20:32:26.887][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-20 20:32:26.888][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.889][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.890][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-20 20:32:26.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-20 20:32:26.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.894][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-20 20:32:26.895][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-20 20:32:26.896][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.897][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.898][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-20 20:32:26.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-20 20:32:26.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.903][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-20 20:32:26.904][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-20 20:32:26.904][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.905][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.907][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-20 20:32:26.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-20 20:32:26.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.911][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-20 20:32:26.912][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-20 20:32:26.913][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.914][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.915][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-20 20:32:26.916][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:26.917][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.918][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.919][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-20 20:32:26.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:26.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.923][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:26.924][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:26.925][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.926][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.927][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:26.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:26.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.931][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-20 20:32:26.932][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-20 20:32:26.933][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.934][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.936][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-20 20:32:26.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-20 20:32:26.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.940][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-20 20:32:26.941][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-20 20:32:26.942][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.942][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.948][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-20 20:32:26.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-20 20:32:26.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.953][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-20 20:32:26.954][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-20 20:32:26.955][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.956][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.957][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-20 20:32:26.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-20 20:32:26.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.961][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:26.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:26.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.965][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:26.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:26.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.969][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:26.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:26.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.973][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:26.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:26.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.977][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:26.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:26.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.981][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:26.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:26.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.984][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:26.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:26.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.989][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:26.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:26.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.992][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:26.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:26.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:26.996][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:26.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:26.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:26.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:27.000][self$createEntryFromContent] Accession numbers: 138307.
biodb.TRACE[2025-08-20 20:32:27.001][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:27.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:27.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.005][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:27.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:27.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.009][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:27.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:27.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:27.013][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:27.014][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:27.015][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:27.019][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:27.020][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:27.021][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:27.022][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:27.023][private$loadEntries] Creating entries from ids [1]: "176803".
biodb.DEBUG[2025-08-20 20:32:27.024][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-20 20:32:27.025][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176803".
biodb.TRACE[2025-08-20 20:32:27.027][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-20 20:32:27.028][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176803.xml".
biodb.DEBUG[2025-08-20 20:32:27.029][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-20 20:32:27.031][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-20 20:32:27.032][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-20 20:32:27.033][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:27.034][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:27.035][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:27.040][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:27.040][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:27.046][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:27.047][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:27.049][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:27.050][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:27.051][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.052][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.054][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:27.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:27.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.058][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-20 20:32:27.059][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-20 20:32:27.060][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.060][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.062][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-20 20:32:27.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-20 20:32:27.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.066][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-20 20:32:27.067][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-20 20:32:27.068][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.069][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.070][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-20 20:32:27.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-20 20:32:27.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.074][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-20 20:32:27.075][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-20 20:32:27.076][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.077][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.078][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-20 20:32:27.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-20 20:32:27.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.082][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-20 20:32:27.083][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-20 20:32:27.084][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.085][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.086][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-20 20:32:27.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-20 20:32:27.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.090][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-20 20:32:27.091][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-20 20:32:27.092][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.093][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.094][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-20 20:32:27.095][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:27.096][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.097][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.099][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-20 20:32:27.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:27.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.103][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:27.104][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:27.105][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.106][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.107][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:27.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:27.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.111][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-20 20:32:27.112][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-20 20:32:27.113][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.114][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.115][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-20 20:32:27.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-20 20:32:27.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.119][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-20 20:32:27.120][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-20 20:32:27.121][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.122][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.123][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-20 20:32:27.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-20 20:32:27.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.127][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-20 20:32:27.128][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-20 20:32:27.129][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.130][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.132][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-20 20:32:27.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-20 20:32:27.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.136][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:27.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:27.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.144][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:27.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:27.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.149][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:27.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:27.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.152][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:27.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:27.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.156][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:27.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:27.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.160][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:27.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:27.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.164][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:27.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:27.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.168][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:27.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:27.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.172][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:27.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:27.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.176][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:27.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:27.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:27.180][self$createEntryFromContent] Accession numbers: 176803.
biodb.TRACE[2025-08-20 20:32:27.181][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:27.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:27.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.185][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:27.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:27.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.189][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:27.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:27.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:27.193][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:27.194][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:27.195][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:27.199][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:27.200][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:27.201][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:27.202][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:27.203][private$loadEntries] Creating entries from ids [1]: "176962".
biodb.DEBUG[2025-08-20 20:32:27.204][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-20 20:32:27.206][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176962".
biodb.TRACE[2025-08-20 20:32:27.207][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-20 20:32:27.209][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176962.xml".
biodb.DEBUG[2025-08-20 20:32:27.210][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-20 20:32:27.211][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-20 20:32:27.212][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-20 20:32:27.214][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:27.215][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:27.216][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:27.220][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:27.221][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:27.222][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:27.223][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:27.225][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:27.226][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:27.227][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.228][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.229][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:27.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:27.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.233][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-20 20:32:27.234][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-20 20:32:27.235][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.241][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.242][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-20 20:32:27.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-20 20:32:27.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.247][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-20 20:32:27.248][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-20 20:32:27.249][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.250][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.251][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-20 20:32:27.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-20 20:32:27.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.255][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-20 20:32:27.256][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-20 20:32:27.257][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.258][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.259][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-20 20:32:27.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-20 20:32:27.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.263][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-20 20:32:27.264][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-20 20:32:27.265][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.266][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.267][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-20 20:32:27.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-20 20:32:27.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.271][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-20 20:32:27.272][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-20 20:32:27.273][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.274][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.275][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-20 20:32:27.276][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:27.277][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.278][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.279][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-20 20:32:27.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:27.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.284][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:27.285][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:27.285][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.286][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.288][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:27.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:27.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.292][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-20 20:32:27.293][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-20 20:32:27.294][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.295][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.296][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-20 20:32:27.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-20 20:32:27.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.300][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-20 20:32:27.301][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-20 20:32:27.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.303][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.304][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-20 20:32:27.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-20 20:32:27.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.308][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-20 20:32:27.309][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-20 20:32:27.310][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.311][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.312][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-20 20:32:27.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-20 20:32:27.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.316][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:27.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:27.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.320][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:27.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:27.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.324][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:27.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:27.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.328][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:27.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:27.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.332][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:27.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:27.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.341][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:27.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:27.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.345][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:27.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:27.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.349][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:27.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:27.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.353][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:27.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:27.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.357][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:27.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:27.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:27.361][self$createEntryFromContent] Accession numbers: 176962.
biodb.TRACE[2025-08-20 20:32:27.362][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:27.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:27.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.366][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:27.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:27.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.370][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:27.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:27.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:27.374][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:27.375][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:27.375][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:27.380][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:27.381][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:27.382][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:27.383][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:27.384][private$loadEntries] Creating entries from ids [1]: "198655".
biodb.DEBUG[2025-08-20 20:32:27.385][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-20 20:32:27.386][cch$loadFileContent] Trying to load 1 files from cache: [1]: "198655".
biodb.TRACE[2025-08-20 20:32:27.387][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-20 20:32:27.389][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/198655.xml".
biodb.DEBUG[2025-08-20 20:32:27.390][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-20 20:32:27.391][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-20 20:32:27.393][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-20 20:32:27.394][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:27.395][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:27.396][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:27.400][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:27.401][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:27.402][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:27.403][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:27.406][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:27.407][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:27.408][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.409][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.410][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:27.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:27.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.414][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-20 20:32:27.415][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-20 20:32:27.416][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.417][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.418][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-20 20:32:27.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-20 20:32:27.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.422][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-20 20:32:27.423][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-20 20:32:27.424][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.425][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.427][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-20 20:32:27.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-20 20:32:27.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.431][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-20 20:32:27.436][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-20 20:32:27.438][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.439][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.440][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-20 20:32:27.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-20 20:32:27.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.444][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-20 20:32:27.445][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-20 20:32:27.446][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.447][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.448][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-20 20:32:27.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-20 20:32:27.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.453][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-20 20:32:27.454][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-20 20:32:27.455][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.455][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.457][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-20 20:32:27.458][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:27.459][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.460][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.461][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-20 20:32:27.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:27.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.465][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:27.466][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:27.467][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.468][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.469][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:27.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:27.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.473][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-20 20:32:27.474][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-20 20:32:27.475][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.476][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.478][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-20 20:32:27.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-20 20:32:27.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.482][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-20 20:32:27.483][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-20 20:32:27.483][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.484][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.486][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-20 20:32:27.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-20 20:32:27.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.490][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-20 20:32:27.491][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-20 20:32:27.492][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.493][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.494][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-20 20:32:27.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-20 20:32:27.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.498][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:27.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:27.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.502][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:27.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:27.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.506][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:27.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:27.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.510][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:27.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:27.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.513][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:27.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:27.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.517][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:27.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:27.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.521][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:27.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:27.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.525][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:27.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:27.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.534][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:27.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:27.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.538][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:27.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:27.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:27.542][self$createEntryFromContent] Accession numbers: 198655.
biodb.TRACE[2025-08-20 20:32:27.543][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:27.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:27.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.547][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:27.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:27.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.551][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:27.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:27.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:27.555][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:27.556][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:27.557][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:27.561][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:27.562][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:27.563][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:27.564][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:27.565][private$loadEntries] Creating entries from ids [1]: "215045".
biodb.DEBUG[2025-08-20 20:32:27.566][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-20 20:32:27.567][cch$loadFileContent] Trying to load 1 files from cache: [1]: "215045".
biodb.TRACE[2025-08-20 20:32:27.569][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-20 20:32:27.570][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/215045.xml".
biodb.DEBUG[2025-08-20 20:32:27.571][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-20 20:32:27.573][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-20 20:32:27.574][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-20 20:32:27.575][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:27.576][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:27.577][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:27.582][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:27.583][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:27.583][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:27.584][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:27.587][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:27.588][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:27.589][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.589][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.591][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:27.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:27.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.595][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-20 20:32:27.596][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-20 20:32:27.597][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.598][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.599][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-20 20:32:27.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-20 20:32:27.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.603][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-20 20:32:27.604][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-20 20:32:27.605][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.606][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.607][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-20 20:32:27.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-20 20:32:27.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.611][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-20 20:32:27.612][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-20 20:32:27.613][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.614][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.615][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-20 20:32:27.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-20 20:32:27.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.619][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-20 20:32:27.620][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-20 20:32:27.621][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.622][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.624][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-20 20:32:27.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-20 20:32:27.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.632][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-20 20:32:27.634][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-20 20:32:27.635][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.636][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.637][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-20 20:32:27.638][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:27.639][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.640][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.641][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-20 20:32:27.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:27.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.645][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:27.646][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:27.647][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.648][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.649][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:27.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:27.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.653][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-20 20:32:27.654][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-20 20:32:27.655][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.656][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.658][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-20 20:32:27.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-20 20:32:27.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.662][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-20 20:32:27.663][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-20 20:32:27.664][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.665][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.666][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-20 20:32:27.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-20 20:32:27.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.670][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-20 20:32:27.671][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-20 20:32:27.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.673][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.674][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-20 20:32:27.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-20 20:32:27.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.678][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:27.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:27.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.682][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:27.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:27.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.686][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:27.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:27.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.690][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:27.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:27.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.694][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:27.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:27.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.698][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:27.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:27.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.702][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:27.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:27.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.706][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:27.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:27.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.710][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:27.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:27.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.714][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:27.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:27.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:27.718][self$createEntryFromContent] Accession numbers: 215045.
biodb.TRACE[2025-08-20 20:32:27.719][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:27.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:27.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.728][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:27.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:27.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.732][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:27.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:27.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:27.753][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-20 20:32:27.756][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-20 20:32:27.758][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-08-20 20:32:27.759][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-20 20:32:27.761][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2025-08-20 20:32:27.764][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:27.765][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:27.765][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:27.770][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:27.771][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:27.772][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:27.773][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:27.774][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:27.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:27.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.778][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:27.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:27.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.782][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:27.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:27.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:27.786][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:27.787][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:27.788][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:27.792][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:27.793][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:27.794][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:27.795][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:27.796][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:27.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:27.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.800][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:27.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:27.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.804][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:27.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:27.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.808][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:27.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:27.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.812][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:27.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:27.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:27.816][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:27.817][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:27.818][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:27.827][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:27.828][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:27.829][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:27.830][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:27.831][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:27.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:27.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.835][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:27.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:27.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.839][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:27.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:27.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.843][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:27.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:27.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.847][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:27.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:27.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:27.851][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:27.852][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:27.853][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:27.857][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:27.858][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:27.859][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:27.860][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:27.861][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:27.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:27.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.865][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:27.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:27.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.869][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:27.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:27.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.873][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:27.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:27.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.877][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:27.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:27.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:27.881][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:27.882][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:27.883][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:27.888][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:27.888][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:27.889][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:27.890][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:27.891][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:27.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:27.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.895][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:27.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:27.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.899][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:27.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:27.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:27.903][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:27.904][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:27.905][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:27.910][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:27.911][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:27.912][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:27.912][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:27.914][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:27.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:27.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.922][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:27.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:27.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.927][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:27.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:27.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:27.931][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:27.932][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:27.933][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:27.937][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:27.938][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:27.939][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:27.940][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:27.941][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:27.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:27.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.945][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:27.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:27.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.950][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:27.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:27.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:27.954][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:27.954][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:27.955][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:27.960][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:27.961][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:27.962][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:27.963][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:27.964][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:27.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:27.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.968][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:27.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:27.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.972][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:27.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:27.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:27.976][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:27.977][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:27.978][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:27.982][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:27.983][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:27.984][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:27.985][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:27.986][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:27.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:27.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.990][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:27.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:27.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:27.994][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:27.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:27.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:27.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:27.998][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:27.999][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:28.000][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:28.004][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:28.005][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:28.006][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:28.007][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:28.008][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:28.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:28.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:28.012][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:28.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:28.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:28.021][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:28.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:28.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:28.025][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:28.026][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:28.027][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:28.031][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:28.032][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:28.033][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:28.034][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:28.035][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:28.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:28.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:28.039][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:28.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:28.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:28.043][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:28.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:28.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:28.047][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:28.048][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:28.049][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:28.053][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:28.054][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:28.055][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:28.056][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:28.057][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:28.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:28.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:28.061][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:28.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:28.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:28.065][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:28.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:28.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:28.069][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:28.070][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:28.071][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:28.075][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:28.076][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:28.077][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:28.078][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:28.079][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:28.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:28.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:28.083][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:28.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:28.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:28.087][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:28.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:28.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:28.091][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:28.092][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:28.093][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:28.097][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:28.098][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:28.099][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:28.100][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:28.101][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:28.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:28.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:28.105][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:28.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:28.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:28.109][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:28.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:28.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:28.118][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:28.119][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:28.120][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:28.125][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:28.126][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:28.126][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:28.127][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:28.128][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:28.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:28.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:28.132][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:28.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:28.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:28.136][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:28.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:28.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:28.140][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:28.141][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:28.142][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:28.147][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:28.148][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:28.149][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:28.150][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:28.151][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:28.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:28.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:28.155][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:28.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:28.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:28.159][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:28.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:28.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:28.163][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:28.164][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:28.165][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:28.169][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:28.170][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:28.171][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:28.172][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:28.173][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:28.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:28.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:28.177][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:28.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:28.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:28.181][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:28.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:28.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:28.185][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:28.186][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:28.187][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:28.191][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:28.192][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:28.193][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:28.194][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:28.195][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:28.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:28.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:28.199][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:28.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:28.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:28.203][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:28.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:28.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:28.207][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:28.208][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:28.213][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:28.219][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:28.220][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:28.220][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:28.221][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:28.222][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:28.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:28.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:28.226][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:28.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:28.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:28.230][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:28.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:28.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:28.234][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:28.235][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:28.236][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:28.241][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:28.242][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:28.243][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:28.244][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:28.245][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:28.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:28.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:28.249][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:28.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:28.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:28.253][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:28.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:28.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:28.272][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:28.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:28.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:28.276][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:28.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:28.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:28.280][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:28.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:28.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:28.284][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:28.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:28.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:28.288][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:28.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:28.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:28.322][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39124*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-20 20:32:28.325][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-20 20:32:28.326][cch$loadFileContent] Trying to load 1 files from cache: [1]: "c5171beada848a87ef2ffa10427d9be3".
biodb.TRACE[2025-08-20 20:32:28.328][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-20 20:32:28.329][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c5171beada848a87ef2ffa10427d9be3.content".
biodb.DEBUG[2025-08-20 20:32:28.332][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39125*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-20 20:32:28.335][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-20 20:32:28.337][cch$loadFileContent] Trying to load 1 files from cache: [1]: "750e63ff76a843f016511fa71c89113e".
biodb.TRACE[2025-08-20 20:32:28.338][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-20 20:32:28.340][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/750e63ff76a843f016511fa71c89113e.content".
biodb.DEBUG[2025-08-20 20:32:28.342][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:28.343][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:28.344][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:28.349][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:28.350][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:28.351][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:28.351][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:28.353][private$loadEntries] Creating entries from ids [1]: "4648".
biodb.DEBUG[2025-08-20 20:32:28.354][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-20 20:32:28.355][cch$loadFileContent] Trying to load 1 files from cache: [1]: "4648".
biodb.TRACE[2025-08-20 20:32:28.356][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-20 20:32:28.358][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4648.xml".
biodb.DEBUG[2025-08-20 20:32:28.359][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-20 20:32:28.360][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-20 20:32:28.361][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-20 20:32:28.363][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:28.364][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:28.365][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:28.369][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:28.370][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:28.371][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:28.372][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:28.375][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:28.376][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:28.377][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.378][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:28.379][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:28.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:28.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:28.383][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-20 20:32:28.384][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-20 20:32:28.385][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.386][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:28.387][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-20 20:32:28.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-20 20:32:28.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:28.391][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-20 20:32:28.392][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-20 20:32:28.393][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.394][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:28.395][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-20 20:32:28.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-20 20:32:28.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:28.399][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-20 20:32:28.400][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-20 20:32:28.401][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.407][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:28.409][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-20 20:32:28.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-20 20:32:28.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:28.413][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-20 20:32:28.414][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-20 20:32:28.415][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.416][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:28.418][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-20 20:32:28.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-20 20:32:28.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:28.422][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-20 20:32:28.423][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-20 20:32:28.424][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.425][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:28.426][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-20 20:32:28.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-20 20:32:28.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:28.430][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-20 20:32:28.431][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:28.432][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.433][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:28.434][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-20 20:32:28.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:28.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:28.438][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:28.439][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:28.440][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.441][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:28.443][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:28.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:28.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:28.447][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-20 20:32:28.448][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-20 20:32:28.449][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.450][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:28.451][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-20 20:32:28.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-20 20:32:28.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:28.455][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-20 20:32:28.456][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-20 20:32:28.457][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.458][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:28.459][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-20 20:32:28.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-20 20:32:28.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:28.463][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-20 20:32:28.464][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-20 20:32:28.465][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.466][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:28.467][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-20 20:32:28.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-20 20:32:28.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:28.471][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:28.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:28.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:28.475][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:28.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:28.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:28.479][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:28.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:28.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:28.483][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:28.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:28.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:28.487][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:28.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:28.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:28.491][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:28.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:28.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:28.495][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:28.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:28.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:28.504][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:28.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:28.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:28.508][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:28.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:28.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:28.512][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:28.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:28.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:28.516][self$createEntryFromContent] Accession numbers: 4648.
biodb.TRACE[2025-08-20 20:32:28.517][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:28.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:28.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:28.521][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:28.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:28.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:28.525][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:28.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:28.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:28.529][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:28.529][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:28.530][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:28.535][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:28.536][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:28.537][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:28.538][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:28.539][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:28.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:28.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:28.543][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:28.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:28.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:28.546][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:28.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:28.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:28.550][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:28.551][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:28.552][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:28.557][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:28.558][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:28.558][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:28.559][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:28.560][private$loadEntries] Creating entries from ids [1]: "62447".
biodb.DEBUG[2025-08-20 20:32:28.561][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-20 20:32:28.563][cch$loadFileContent] Trying to load 1 files from cache: [1]: "62447".
biodb.TRACE[2025-08-20 20:32:28.564][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-20 20:32:28.566][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62447.xml".
biodb.DEBUG[2025-08-20 20:32:28.567][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-20 20:32:28.568][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-20 20:32:28.569][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-20 20:32:28.571][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:28.572][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:28.573][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:28.577][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:28.578][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:28.579][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:28.580][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:28.582][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:28.583][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:28.584][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.585][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:28.586][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:28.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:28.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:28.590][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-20 20:32:28.591][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-20 20:32:28.592][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.593][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:28.763][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-20 20:32:28.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-20 20:32:28.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:28.767][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-20 20:32:28.768][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-20 20:32:28.769][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.770][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:28.771][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-20 20:32:28.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-20 20:32:28.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:28.775][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-20 20:32:28.776][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-20 20:32:28.777][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.778][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:28.779][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-20 20:32:28.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-20 20:32:28.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:28.783][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-20 20:32:28.784][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-20 20:32:28.785][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.786][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:28.787][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-20 20:32:28.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-20 20:32:28.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:28.791][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-20 20:32:28.792][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-20 20:32:28.793][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.794][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:28.795][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-20 20:32:28.796][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:28.797][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.798][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:28.799][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-20 20:32:28.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:28.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:28.803][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:28.804][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:28.805][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.806][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:28.807][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:28.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:28.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:28.811][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-20 20:32:28.812][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-20 20:32:28.813][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.814][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:28.815][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-20 20:32:28.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-20 20:32:28.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:28.819][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-20 20:32:28.820][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-20 20:32:28.821][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.822][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:28.823][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-20 20:32:28.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-20 20:32:28.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:28.827][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-20 20:32:28.828][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-20 20:32:28.829][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.830][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:28.831][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-20 20:32:28.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-20 20:32:28.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:28.835][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:28.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:28.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:28.839][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:28.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:28.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:28.842][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:28.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:28.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:28.846][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:28.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:28.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:28.850][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:28.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:28.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:28.854][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:28.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:28.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:28.858][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:28.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:28.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:28.862][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:28.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:28.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:28.866][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:28.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:28.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:28.870][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:28.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:28.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:28.874][self$createEntryFromContent] Accession numbers: 62447.
biodb.TRACE[2025-08-20 20:32:28.875][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:28.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:28.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:28.880][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:28.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:28.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:28.884][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:28.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:28.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:28.907][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-20 20:32:28.911][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-20 20:32:28.912][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-08-20 20:32:28.914][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-20 20:32:28.915][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2025-08-20 20:32:28.918][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:28.919][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:28.920][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:28.925][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:28.926][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:28.927][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:28.928][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:28.930][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:28.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:28.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:28.934][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:28.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:28.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:28.939][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:28.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:28.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:28.943][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:28.944][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:28.945][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:28.950][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:28.951][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:28.952][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:28.953][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:28.954][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:28.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:28.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:28.959][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:28.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:28.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:28.963][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:28.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:28.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:28.968][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:28.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:28.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:28.972][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:28.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:28.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:28.977][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:28.978][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:28.979][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:28.984][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:28.985][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:28.986][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:28.987][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:28.988][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:28.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:28.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:28.993][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:28.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:28.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:28.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:28.997][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:28.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:28.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:29.002][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:29.006][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:29.011][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:29.012][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:29.013][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:29.018][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:29.020][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:29.021][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:29.022][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:29.023][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:29.027][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:29.032][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:29.036][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:29.041][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:29.045][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:29.046][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:29.047][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:29.052][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:29.053][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:29.054][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:29.055][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:29.057][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:29.061][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:29.065][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:29.070][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:29.071][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:29.072][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:29.077][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:29.078][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:29.079][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:29.080][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:29.081][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:29.086][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:29.090][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:29.095][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:29.096][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:29.097][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:29.102][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:29.103][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:29.104][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:29.105][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:29.106][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:29.110][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:29.115][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:29.119][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:29.120][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:29.121][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:29.126][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:29.128][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:29.129][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:29.130][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:29.131][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:29.140][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:29.144][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:29.147][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:29.148][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:29.149][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:29.154][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:29.154][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:29.155][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:29.156][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:29.157][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:29.161][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:29.165][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:29.169][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:29.170][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:29.171][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:29.175][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:29.176][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:29.177][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:29.178][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:29.179][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:29.183][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:29.186][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:29.190][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:29.191][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:29.192][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:29.196][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:29.197][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:29.198][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:29.199][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:29.200][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:29.204][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:29.208][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:29.212][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:29.213][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:29.214][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:29.218][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:29.219][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:29.220][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:29.221][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:29.222][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:29.226][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:29.230][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:29.234][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:29.235][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:29.236][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:29.240][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:29.241][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:29.242][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:29.243][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:29.244][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:29.248][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:29.252][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:29.256][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:29.256][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:29.257][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:29.262][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:29.263][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:29.263][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:29.264][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:29.266][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:29.269][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:29.273][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:29.277][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:29.278][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:29.279][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:29.283][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:29.284][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:29.285][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:29.286][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:29.287][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:29.291][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:29.295][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:29.299][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:29.300][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:29.301][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:29.305][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:29.306][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:29.307][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:29.308][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:29.309][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:29.313][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:29.317][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:29.321][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:29.322][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:29.323][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:29.327][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:29.328][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:29.329][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:29.330][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:29.331][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:29.335][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:29.339][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:29.343][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:29.344][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:29.345][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:29.349][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:29.350][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:29.351][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:29.352][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:29.353][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:29.357][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:29.361][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:29.365][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:29.374][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:29.375][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:29.382][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:29.383][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:29.384][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:29.385][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:29.387][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:29.391][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:29.396][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:29.400][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:29.401][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:29.402][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:29.407][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:29.408][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:29.409][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:29.410][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:29.411][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:29.416][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:29.420][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:29.444][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-20 20:32:29.449][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-20 20:32:29.450][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-08-20 20:32:29.452][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-20 20:32:29.453][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2025-08-20 20:32:29.457][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:29.458][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:29.459][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:29.464][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:29.465][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:29.466][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:29.467][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:29.469][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:29.473][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:29.478][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:29.482][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:29.483][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:29.484][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:29.489][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:29.490][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:29.491][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:29.492][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:29.493][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:29.497][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:29.502][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:29.506][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:29.510][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:29.528][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:29.529][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:29.530][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:29.534][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:29.535][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:29.536][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:29.537][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:29.539][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:29.543][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:29.547][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:29.551][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:29.555][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:29.560][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:29.560][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:29.561][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:29.566][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:29.567][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:29.568][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:29.569][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:29.570][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:29.574][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:29.579][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:29.583][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:29.587][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:29.591][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:29.592][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:29.593][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:29.598][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:29.599][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:29.600][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:29.601][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:29.602][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:29.606][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:29.610][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:29.615][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:29.615][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:29.616][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:29.621][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:29.622][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:29.623][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:29.624][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:29.625][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:29.630][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:29.634][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:29.638][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:29.639][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:29.640][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:29.645][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:29.646][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:29.647][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:29.648][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:29.649][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:29.654][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:29.658][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:29.662][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:29.663][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:29.664][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:29.669][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:29.670][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:29.671][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:29.672][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:29.673][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:29.677][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:29.682][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:29.686][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:29.687][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:29.688][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:29.695][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:29.696][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:29.697][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:29.699][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:29.700][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:29.704][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:29.709][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:29.713][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:29.714][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:29.715][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:29.720][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:29.721][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:29.722][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:29.723][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:29.724][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:29.729][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:29.733][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:29.737][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:29.738][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:29.739][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:29.744][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:29.745][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:29.746][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:29.746][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:29.748][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:29.752][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:29.756][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:29.760][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:29.761][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:29.762][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:29.767][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:29.768][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:29.769][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:29.770][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:29.771][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:29.775][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:29.779][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:29.782][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:29.783][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:29.784][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:29.788][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:29.789][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:29.790][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:29.791][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:29.792][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:29.796][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:29.800][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:29.804][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:29.805][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:29.806][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:29.810][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:29.811][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:29.812][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:29.813][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:29.814][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:29.818][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:29.822][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:29.826][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:29.827][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:29.827][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:29.832][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:29.833][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:29.834][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:29.834][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:29.836][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:29.839][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:29.843][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:29.847][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:29.848][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:29.849][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:29.853][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:29.854][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:29.855][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:29.856][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:29.857][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:29.861][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:29.865][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:29.869][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:29.869][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:29.870][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:29.875][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:29.876][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:29.877][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:29.878][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:29.879][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:29.883][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:29.891][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:29.895][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:29.896][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:29.897][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:29.901][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:29.902][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:29.903][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:29.904][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:29.905][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:29.909][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:29.913][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:29.916][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:29.917][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:29.918][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:29.922][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:29.923][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:29.924][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:29.925][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:29.926][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:29.930][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:29.934][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:29.938][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:29.938][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:29.939][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:29.944][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:29.944][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:29.945][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:29.946][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:29.947][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:29.951][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:29.955][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:29.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:29.971][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-08-20 20:32:29.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-08-20 20:32:29.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-08-20 20:32:29.981][biodb::testThat]
biodb.INFO [2025-08-20 20:32:29.982][biodb::testThat] Running test function  test_annotateMzValues_input_vector  (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2025-08-20 20:32:29.983][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-20 20:32:29.984][biodb::testThat]
biodb.TRACE[2025-08-20 20:32:29.987][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-20 20:32:29.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-20 20:32:29.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:29.991][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:29.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:29.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:29.995][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:29.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:29.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:29.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:29.999][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:30.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:30.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:30.002][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:30.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:30.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:30.009][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:30.010][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:30.011][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:30.015][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:30.016][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:30.017][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:30.018][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:30.021][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-20 20:32:30.024][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-20 20:32:30.025][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2025-08-20 20:32:30.026][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-20 20:32:30.027][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2025-08-20 20:32:30.030][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:30.031][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:30.031][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:30.036][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:30.037][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:30.037][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:30.038][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:30.039][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:30.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:30.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:30.043][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:30.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:30.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:30.047][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:30.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:30.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:30.052][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-20 20:32:30.055][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-20 20:32:30.056][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2025-08-20 20:32:30.057][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-20 20:32:30.059][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2025-08-20 20:32:30.061][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:30.062][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:30.063][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:30.067][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:30.068][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:30.069][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:30.070][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:30.071][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:30.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:30.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:30.075][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:30.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:30.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:30.079][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:30.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:30.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:30.083][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:30.084][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:30.085][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:30.089][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:30.090][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:30.091][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:30.091][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:30.093][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:30.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:30.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:30.097][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:30.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:30.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:30.100][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:30.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:30.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:30.104][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-20 20:32:30.106][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:30.107][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:30.108][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:30.112][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:30.113][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:30.114][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:30.115][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:30.116][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:30.120][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:30.124][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-20 20:32:30.125][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-20 20:32:30.126][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-20 20:32:30.127][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-20 20:32:30.128][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-20 20:32:30.129][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.130][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.132][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:30.133][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.134][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.134][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.135][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:30.136][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-20 20:32:30.137][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-20 20:32:30.138][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.139][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.140][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.141][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:30.142][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-20 20:32:30.143][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:30.147][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:30.151][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:30.164][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-08-20 20:32:30.165][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:30.166][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:30.167][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:30.171][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:30.172][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:30.173][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:30.174][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:30.175][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:30.179][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:30.182][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-20 20:32:30.183][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-20 20:32:30.184][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-20 20:32:30.185][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-20 20:32:30.186][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-20 20:32:30.187][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.188][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.189][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.190][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:30.191][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.192][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.193][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.194][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:30.195][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-20 20:32:30.196][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-20 20:32:30.197][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.198][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.199][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.200][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:30.201][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-20 20:32:30.202][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:30.205][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:30.209][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:30.214][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-08-20 20:32:30.215][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:30.215][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:30.216][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:30.221][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:30.222][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:30.223][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:30.223][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:30.225][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:30.233][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:30.237][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-20 20:32:30.238][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-20 20:32:30.239][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-20 20:32:30.240][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-20 20:32:30.240][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-20 20:32:30.241][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.242][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.243][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.244][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:30.245][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.246][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.247][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.248][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:30.249][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-20 20:32:30.250][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-20 20:32:30.251][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.252][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.253][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.253][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:30.254][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-20 20:32:30.255][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:30.259][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:30.263][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:30.267][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-08-20 20:32:30.268][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-20 20:32:30.269][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-08-20 20:32:30.277][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:30.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:30.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:30.281][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:30.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:30.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:30.285][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:30.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:30.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:30.289][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:30.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:30.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:30.343][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:30.344][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:30.345][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:30.349][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:30.350][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:30.351][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:30.352][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:30.355][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-20 20:32:30.358][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-20 20:32:30.359][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2025-08-20 20:32:30.361][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-20 20:32:30.362][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2025-08-20 20:32:30.365][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-20 20:32:30.368][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-20 20:32:30.369][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2025-08-20 20:32:30.370][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-20 20:32:30.372][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2025-08-20 20:32:30.374][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:30.375][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:30.376][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:30.380][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:30.381][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:30.382][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:30.383][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:30.384][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:30.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:30.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:30.388][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:30.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:30.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:30.392][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:30.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:30.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:30.396][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:30.397][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:30.398][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:30.402][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:30.403][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:30.404][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:30.405][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:30.406][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:30.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:30.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:30.410][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:30.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:30.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:30.414][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:30.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:30.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:30.417][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:30.418][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:30.419][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:30.424][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:30.424][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:30.425][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:30.426][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:30.427][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:30.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:30.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:30.431][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:30.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:30.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:30.435][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:30.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:30.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:30.462][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-20 20:32:30.485][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:30.486][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:30.487][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:30.492][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:30.493][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:30.494][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:30.495][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:30.496][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:30.500][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:30.504][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-20 20:32:30.505][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-20 20:32:30.506][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-20 20:32:30.507][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-20 20:32:30.508][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-20 20:32:30.509][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.510][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.510][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.511][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:30.512][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.513][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.514][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.515][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:30.516][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-20 20:32:30.517][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-20 20:32:30.518][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.519][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.520][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.521][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:30.522][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-20 20:32:30.523][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:30.527][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:30.531][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:30.535][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-08-20 20:32:30.536][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:30.537][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:30.538][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:30.547][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:30.548][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:30.549][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:30.550][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:30.562][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:30.566][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:30.589][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-20 20:32:30.590][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-20 20:32:30.591][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-20 20:32:30.592][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-20 20:32:30.593][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-20 20:32:30.594][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.595][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.596][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.596][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:30.597][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.598][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.599][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.600][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:30.601][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-20 20:32:30.611][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-20 20:32:30.612][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.613][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.614][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.615][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:30.616][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-20 20:32:30.617][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:30.621][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:30.625][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:30.629][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-08-20 20:32:30.630][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:30.631][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:30.632][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:30.636][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:30.637][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:30.638][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:30.639][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:30.640][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:30.644][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:30.648][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-20 20:32:30.649][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-20 20:32:30.650][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-20 20:32:30.651][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-20 20:32:30.652][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-20 20:32:30.653][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.654][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.655][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.656][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:30.657][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.658][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.659][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.660][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:30.661][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-20 20:32:30.662][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-20 20:32:30.663][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.664][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.665][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.665][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:30.666][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-20 20:32:30.667][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:30.671][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:30.675][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:30.679][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-08-20 20:32:30.680][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-20 20:32:30.681][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-08-20 20:32:30.689][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-08-20 20:32:30.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-08-20 20:32:30.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-08-20 20:32:30.696][biodb::testThat]
biodb.INFO [2025-08-20 20:32:30.697][biodb::testThat] Running test function  test_annotateMzValues_ppm_tol  (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2025-08-20 20:32:30.698][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-20 20:32:30.699][biodb::testThat]
biodb.TRACE[2025-08-20 20:32:30.701][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-20 20:32:30.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-20 20:32:30.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:30.705][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:30.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:30.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:30.709][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:30.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:30.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:30.713][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:30.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:30.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:30.717][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:30.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:30.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:30.723][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:30.724][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:30.725][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:30.729][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:30.730][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:30.731][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:30.732][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:30.734][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-20 20:32:30.737][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-20 20:32:30.739][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2025-08-20 20:32:30.740][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-20 20:32:30.741][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2025-08-20 20:32:30.743][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:30.744][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:30.745][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:30.749][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:30.750][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:30.751][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:30.752][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:30.753][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:30.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:30.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:30.757][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:30.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:30.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:30.761][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:30.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:30.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:30.766][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-20 20:32:30.769][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-20 20:32:30.770][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2025-08-20 20:32:30.771][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-20 20:32:30.772][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2025-08-20 20:32:30.775][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:30.776][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:30.776][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:30.781][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:30.782][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:30.782][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:30.783][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:30.784][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:30.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:30.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:30.788][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:30.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:30.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:30.792][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:30.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:30.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:30.796][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:30.797][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:30.798][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:30.802][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:30.803][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:30.804][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:30.805][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:30.806][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:30.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:30.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:30.810][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:30.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:30.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:30.814][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:30.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:30.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:30.818][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-20 20:32:30.819][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:30.820][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:30.821][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:30.825][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:30.826][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:30.827][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:30.828][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:30.829][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:30.833][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:30.837][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-20 20:32:30.838][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-20 20:32:30.839][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-20 20:32:30.840][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-20 20:32:30.841][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-20 20:32:30.842][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.843][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.844][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.845][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:30.846][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.847][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.848][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.849][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:30.850][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-20 20:32:30.851][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-20 20:32:30.852][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.853][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.854][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.854][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:30.855][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-20 20:32:30.856][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:30.860][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:30.864][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:30.873][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-08-20 20:32:30.874][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:30.875][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:30.876][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:30.880][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:30.881][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:30.881][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:30.882][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:30.883][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:30.887][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:30.891][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-20 20:32:30.892][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-20 20:32:30.893][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-20 20:32:30.894][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-20 20:32:30.894][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-20 20:32:30.895][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.896][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.897][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.898][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:30.899][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.900][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.901][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.902][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:30.903][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-20 20:32:30.904][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-20 20:32:30.905][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.906][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.907][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.908][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:30.908][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-20 20:32:30.909][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:30.913][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:30.917][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:30.921][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-08-20 20:32:30.922][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:30.923][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:30.924][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:30.928][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:30.929][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:30.930][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:30.931][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:30.932][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:30.936][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:30.940][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-20 20:32:30.941][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-20 20:32:30.941][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-20 20:32:30.942][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-20 20:32:30.943][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-20 20:32:30.944][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.945][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.946][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.947][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:30.948][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.949][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.950][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.951][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:30.952][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-20 20:32:30.953][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-20 20:32:30.954][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.955][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.955][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.956][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:30.957][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-20 20:32:30.958][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:30.962][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:30.966][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:30.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:30.970][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-08-20 20:32:30.971][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-20 20:32:30.972][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-08-20 20:32:30.980][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:30.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:30.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:30.984][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:30.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:30.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:30.988][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:30.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:30.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:30.992][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:30.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:30.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:30.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:30.998][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:30.999][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:31.000][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:31.005][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:31.005][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:31.006][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:31.007][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:31.010][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-20 20:32:31.013][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-20 20:32:31.014][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2025-08-20 20:32:31.015][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-20 20:32:31.017][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2025-08-20 20:32:31.020][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-20 20:32:31.023][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-20 20:32:31.024][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2025-08-20 20:32:31.026][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-20 20:32:31.027][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2025-08-20 20:32:31.029][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:31.030][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:31.031][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:31.035][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:31.036][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:31.037][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:31.038][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:31.039][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:31.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:31.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.043][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:31.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:31.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.047][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:31.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:31.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:31.051][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:31.052][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:31.053][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:31.057][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:31.058][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:31.059][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:31.060][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:31.061][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:31.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:31.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.065][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:31.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:31.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.069][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:31.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:31.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:31.073][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:31.074][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:31.074][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:31.079][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:31.080][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:31.080][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:31.081][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:31.082][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:31.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:31.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.086][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:31.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:31.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.090][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:31.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:31.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:31.094][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-20 20:32:31.096][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:31.097][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:31.097][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:31.102][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:31.103][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:31.103][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:31.104][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:31.105][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.109][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.113][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-20 20:32:31.114][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-20 20:32:31.115][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-20 20:32:31.116][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-20 20:32:31.117][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-20 20:32:31.118][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.119][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.120][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.121][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.122][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.123][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.123][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.124][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.125][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-20 20:32:31.126][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-20 20:32:31.127][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.128][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.129][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.130][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.131][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-20 20:32:31.132][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.136][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.140][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.144][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-08-20 20:32:31.145][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:31.146][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:31.147][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:31.151][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:31.152][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:31.153][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:31.154][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:31.155][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.159][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.163][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-20 20:32:31.164][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-20 20:32:31.165][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-20 20:32:31.166][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-20 20:32:31.167][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-20 20:32:31.168][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.169][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.170][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.171][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.172][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.173][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.174][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.175][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.176][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-20 20:32:31.177][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-20 20:32:31.178][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.179][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.180][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.180][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.181][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-20 20:32:31.182][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.186][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.190][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.195][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-08-20 20:32:31.196][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:31.196][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:31.197][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:31.202][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:31.203][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:31.203][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:31.204][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:31.206][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.214][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.217][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-20 20:32:31.218][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-20 20:32:31.219][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-20 20:32:31.220][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-20 20:32:31.221][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-20 20:32:31.222][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.223][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.224][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.225][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.226][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.227][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.228][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.229][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.230][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-20 20:32:31.230][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-20 20:32:31.231][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.232][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.233][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.234][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.235][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-20 20:32:31.236][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.240][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.244][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.248][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-08-20 20:32:31.249][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-20 20:32:31.249][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-08-20 20:32:31.257][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-08-20 20:32:31.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-08-20 20:32:31.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-08-20 20:32:31.264][biodb::testThat]
biodb.INFO [2025-08-20 20:32:31.265][biodb::testThat] Running test function  test_annotateMzValues_input_dataframe_untouched  (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2025-08-20 20:32:31.266][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-20 20:32:31.266][biodb::testThat]
biodb.TRACE[2025-08-20 20:32:31.269][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-20 20:32:31.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-20 20:32:31.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.273][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:31.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:31.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.277][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:31.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:31.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.281][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:31.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:31.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.284][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:31.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:31.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:31.292][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:31.293][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:31.294][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:31.298][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:31.299][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:31.300][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:31.300][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:31.303][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-20 20:32:31.306][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-20 20:32:31.307][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2025-08-20 20:32:31.308][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-20 20:32:31.310][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2025-08-20 20:32:31.312][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:31.313][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:31.314][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:31.318][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:31.319][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:31.320][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:31.321][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:31.322][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:31.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:31.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.325][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:31.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:31.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.329][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:31.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:31.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:31.334][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-20 20:32:31.337][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-20 20:32:31.338][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2025-08-20 20:32:31.339][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-20 20:32:31.341][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2025-08-20 20:32:31.343][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:31.344][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:31.345][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:31.349][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:31.350][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:31.351][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:31.352][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:31.353][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:31.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:31.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.357][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:31.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:31.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.361][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:31.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:31.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:31.365][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:31.365][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:31.366][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:31.371][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:31.372][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:31.373][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:31.374][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:31.375][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:31.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:31.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.379][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:31.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:31.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.383][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:31.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:31.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:31.387][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-20 20:32:31.389][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:31.390][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:31.390][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:31.395][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:31.396][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:31.397][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:31.397][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:31.399][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.403][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.406][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-20 20:32:31.407][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-20 20:32:31.408][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-20 20:32:31.409][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-20 20:32:31.410][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-20 20:32:31.411][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.412][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.413][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.414][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.415][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.416][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.417][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.418][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.419][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-20 20:32:31.420][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-20 20:32:31.421][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.422][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.422][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.423][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.424][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-20 20:32:31.425][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.429][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.433][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.437][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-08-20 20:32:31.438][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:31.439][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:31.440][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:31.444][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:31.445][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:31.446][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:31.447][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:31.448][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.452][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.456][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-20 20:32:31.457][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-20 20:32:31.458][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-20 20:32:31.458][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-20 20:32:31.459][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-20 20:32:31.460][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.461][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.462][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.463][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.464][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.465][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.466][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.467][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.468][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-20 20:32:31.469][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-20 20:32:31.470][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.471][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.472][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.473][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.474][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-20 20:32:31.475][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.478][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.482][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.486][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-08-20 20:32:31.487][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:31.488][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:31.489][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:31.493][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:31.494][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:31.495][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:31.496][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:31.497][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.501][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.505][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-20 20:32:31.506][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-20 20:32:31.507][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-20 20:32:31.507][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-20 20:32:31.508][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-20 20:32:31.509][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.510][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.511][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.512][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.513][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.514][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.515][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.516][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.517][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-20 20:32:31.518][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-20 20:32:31.519][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.520][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.521][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.522][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.522][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-20 20:32:31.523][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.527][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.531][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.535][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-08-20 20:32:31.536][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-20 20:32:31.537][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-08-20 20:32:31.559][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:31.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:31.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.563][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:31.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:31.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.567][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:31.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:31.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.570][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:31.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:31.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:31.578][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:31.578][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:31.579][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:31.583][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:31.584][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:31.585][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:31.586][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:31.589][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-20 20:32:31.591][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-20 20:32:31.593][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2025-08-20 20:32:31.594][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-20 20:32:31.595][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2025-08-20 20:32:31.598][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-08-20 20:32:31.601][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-20 20:32:31.602][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2025-08-20 20:32:31.603][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-20 20:32:31.604][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2025-08-20 20:32:31.607][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:31.608][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:31.609][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:31.613][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:31.614][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:31.614][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:31.615][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:31.616][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:31.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:31.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.620][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:31.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:31.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.624][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:31.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:31.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:31.628][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:31.629][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:31.630][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:31.634][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:31.635][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:31.636][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:31.636][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:31.638][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:31.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:31.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.641][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:31.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:31.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.645][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:31.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:31.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:31.649][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:31.650][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:31.651][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:31.655][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:31.656][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:31.657][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:31.658][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:31.659][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:31.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:31.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.663][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:31.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:31.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.667][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:31.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:31.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:31.671][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-20 20:32:31.672][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:31.673][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:31.674][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:31.678][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:31.679][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:31.680][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:31.681][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:31.682][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.686][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.690][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-20 20:32:31.691][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-20 20:32:31.692][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-20 20:32:31.692][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-20 20:32:31.693][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-20 20:32:31.694][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.695][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.696][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.697][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.698][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.699][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.700][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.701][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.702][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-20 20:32:31.703][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-20 20:32:31.704][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.705][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.706][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.707][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.708][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-20 20:32:31.709][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.712][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.716][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.721][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-08-20 20:32:31.722][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:31.723][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:31.723][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:31.728][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:31.729][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:31.729][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:31.730][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:31.731][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.735][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.739][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-20 20:32:31.740][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-20 20:32:31.741][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-20 20:32:31.742][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-20 20:32:31.743][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-20 20:32:31.744][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.745][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.746][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.747][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.748][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.749][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.750][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.750][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.751][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-20 20:32:31.752][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-20 20:32:31.753][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.754][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.755][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.756][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.757][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-20 20:32:31.758][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.762][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.766][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.770][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-08-20 20:32:31.771][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:31.772][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:31.773][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:31.777][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:31.778][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:31.779][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:31.780][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:31.781][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.785][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.789][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-20 20:32:31.790][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-20 20:32:31.790][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-20 20:32:31.791][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-20 20:32:31.792][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-20 20:32:31.793][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.794][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.795][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.796][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.797][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.798][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.799][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.800][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.801][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-20 20:32:31.802][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-20 20:32:31.803][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.804][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.805][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.806][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.807][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-20 20:32:31.808][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.812][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.815][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.820][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-08-20 20:32:31.821][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-20 20:32:31.822][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-08-20 20:32:31.838][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-08-20 20:32:31.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-08-20 20:32:31.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-08-20 20:32:31.845][biodb::testThat]
biodb.INFO [2025-08-20 20:32:31.846][biodb::testThat] Running test function  test.wrong.entry  (" Wrong entry gives NULL ").
biodb.INFO [2025-08-20 20:32:31.846][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-20 20:32:31.847][biodb::testThat]
biodb.DEBUG[2025-08-20 20:32:31.849][private$loadEntries] Creating entries from ids [1]: "WRONGA".
biodb.DEBUG[2025-08-20 20:32:31.850][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-20 20:32:31.851][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGA".
biodb.TRACE[2025-08-20 20:32:31.853][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-20 20:32:31.854][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/WRONGA.xml".
biodb.DEBUG[2025-08-20 20:32:31.855][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-20 20:32:31.857][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-20 20:32:31.858][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-20 20:32:31.859][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:31.860][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:31.861][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:31.865][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:31.866][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:31.867][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:31.868][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:31.870][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:31.871][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:31.872][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.873][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.874][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:31.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:31.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.878][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-20 20:32:31.884][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-20 20:32:31.885][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.885][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.887][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-20 20:32:31.888][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-20 20:32:31.889][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.889][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.891][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-20 20:32:31.892][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-20 20:32:31.893][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.894][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.895][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-20 20:32:31.896][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-20 20:32:31.897][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.897][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.899][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-20 20:32:31.900][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-20 20:32:31.900][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.901][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.902][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-20 20:32:31.903][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:31.904][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.905][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.906][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:31.907][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:31.908][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.909][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.910][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-20 20:32:31.911][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-20 20:32:31.912][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.913][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.914][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-20 20:32:31.915][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-20 20:32:31.916][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.917][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.918][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-20 20:32:31.919][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-20 20:32:31.920][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.921][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.922][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.926][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.929][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:31.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:31.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.933][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:31.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.937][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:31.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:31.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.941][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:31.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:31.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.945][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:31.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:31.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.948][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:31.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:31.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.952][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:31.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:31.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:31.956][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:31.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:31.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:31.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:31.960][self$createEntryFromContent] Accession numbers: .
biodb.DEBUG[2025-08-20 20:32:31.960][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.INFO [2025-08-20 20:32:31.967][biodb::testThat]
biodb.INFO [2025-08-20 20:32:31.968][biodb::testThat] Running test function  test.wrong.entry.among.good.ones  (" One wrong entry does not block the retrieval of good ones ").
biodb.INFO [2025-08-20 20:32:31.969][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-20 20:32:31.970][biodb::testThat]
biodb.DEBUG[2025-08-20 20:32:31.978][function(conn, opt)] IDS: [4]: "WRONGB, 15440, 2528, 7799"
biodb.DEBUG[2025-08-20 20:32:31.979][private$loadEntries] Creating entries from ids [3]: "WRONGB, 2528, 7799".
biodb.DEBUG[2025-08-20 20:32:31.980][conn$getEntryContent] Get ChEBI entry content(s) for 3 id(s)...
biodb.TRACE[2025-08-20 20:32:31.981][cch$loadFileContent] Trying to load 3 files from cache: [3]: "WRONGB, 2528, 7799".
biodb.TRACE[2025-08-20 20:32:31.983][cch$loadFileContent] file.exist = [3]: "TRUE, TRUE, TRUE".
biodb.TRACE[2025-08-20 20:32:31.985][loadFileContents] Loaded 3 files from cache: [3]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/WRONGB.xml, /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2528.xml, /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7799.xml".
biodb.DEBUG[2025-08-20 20:32:31.986][conn$getEntryContent] 3 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-20 20:32:31.987][self$createEntryFromContent] Creating ChEBI entries from 3 content(s).
biodb.DEBUG[2025-08-20 20:32:31.988][self$createEntryFromContent] Parsing 3 ChEBI entries.
biodb.DEBUG[2025-08-20 20:32:31.990][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:31.991][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:31.992][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:31.996][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:31.997][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:31.998][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:31.999][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:32.001][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:32.002][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:32.003][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:32.004][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:32.005][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:32.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:32.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:32.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:32.009][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-20 20:32:32.010][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-20 20:32:32.011][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:32.011][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:32.013][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-20 20:32:32.014][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-20 20:32:32.015][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:32.015][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:32.017][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-20 20:32:32.018][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-20 20:32:32.019][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:32.020][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:32.021][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-20 20:32:32.022][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-20 20:32:32.023][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:32.024][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:32.025][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-20 20:32:32.026][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-20 20:32:32.027][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:32.028][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:32.029][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-20 20:32:32.030][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:32.031][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:32.032][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:32.033][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:32.034][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:32.035][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:32.036][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:32.037][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-20 20:32:32.038][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-20 20:32:32.039][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:32.040][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:32.041][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-20 20:32:32.042][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-20 20:32:32.043][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:32.044][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:32.045][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-20 20:32:32.046][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-20 20:32:32.047][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:32.048][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:32.049][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:32.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:32.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:32.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:32.053][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:32.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:32.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:32.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:32.057][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:32.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:32.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:32.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:32.060][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:32.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:32.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:32.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:32.064][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:32.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:32.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:32.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:32.068][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:32.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:32.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:32.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:32.072][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:32.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:32.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:32.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:32.076][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:32.077][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:32.078][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:32.082][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:32.083][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:32.084][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:32.084][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:32.087][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:32.088][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:32.089][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:32.089][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:32.091][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:32.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:32.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:32.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:32.095][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-20 20:32:32.096][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-20 20:32:32.096][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:32.097][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:32.099][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-20 20:32:32.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-20 20:32:32.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:32.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:32.103][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-20 20:32:32.104][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-20 20:32:32.105][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:32.105][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:32.107][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-20 20:32:32.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-20 20:32:32.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:32.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:32.111][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-20 20:32:32.112][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-20 20:32:32.113][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:32.114][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:32.115][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-20 20:32:32.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-20 20:32:32.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:32.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:32.119][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-20 20:32:32.120][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-20 20:32:32.121][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:32.122][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:32.123][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-20 20:32:32.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-20 20:32:32.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:32.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:32.127][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-20 20:32:32.128][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-20 20:32:32.129][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:32.129][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:32.131][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-20 20:32:32.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-20 20:32:32.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:32.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:32.135][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-20 20:32:32.136][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:32.137][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:32.137][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:32.139][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-20 20:32:32.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:32.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:32.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:32.143][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:32.144][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:32.144][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:32.145][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:32.147][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:32.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:32.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:32.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:32.150][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-20 20:32:32.151][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-20 20:32:32.152][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:32.153][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:32.155][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-20 20:32:32.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-20 20:32:32.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:32.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:32.158][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-20 20:32:32.159][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-20 20:32:32.160][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:32.161][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:32.163][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-20 20:32:32.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-20 20:32:32.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:32.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:32.166][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-20 20:32:32.167][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-20 20:32:32.168][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:32.169][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:32.171][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-20 20:32:32.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-20 20:32:32.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:32.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:32.175][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:32.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:32.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:32.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:32.178][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:32.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:32.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:32.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:32.182][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:32.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:32.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:32.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:32.186][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:32.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:32.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:32.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:32.190][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:32.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:32.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:32.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:32.194][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:32.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:32.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:32.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:32.198][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:32.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:32.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:32.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:32.202][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:32.203][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:32.203][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:32.208][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:32.209][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:32.210][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:32.210][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:32.217][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:32.218][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:32.219][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:32.220][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:32.221][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:32.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:32.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:32.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:32.225][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-20 20:32:32.226][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-20 20:32:32.227][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:32.228][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:32.229][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-20 20:32:32.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-20 20:32:32.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:32.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:32.233][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-20 20:32:32.234][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-20 20:32:32.234][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:32.235][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:32.237][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-20 20:32:32.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-20 20:32:32.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:32.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:32.240][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-20 20:32:32.241][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-20 20:32:32.242][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:32.243][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:32.244][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-20 20:32:32.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-20 20:32:32.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:32.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:32.248][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-20 20:32:32.249][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-20 20:32:32.250][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:32.251][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:32.252][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-20 20:32:32.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-20 20:32:32.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:32.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:32.256][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-20 20:32:32.257][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-20 20:32:32.258][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:32.258][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:32.260][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-20 20:32:32.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-20 20:32:32.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:32.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:32.263][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-20 20:32:32.264][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:32.265][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:32.266][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:32.267][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-20 20:32:32.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:32.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:32.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:32.271][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:32.272][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:32.273][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:32.274][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:32.275][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:32.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:32.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:32.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:32.279][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-20 20:32:32.280][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-20 20:32:32.281][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:32.282][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:32.283][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-20 20:32:32.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-20 20:32:32.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:32.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:32.287][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-20 20:32:32.288][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-20 20:32:32.289][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:32.290][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:32.291][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-20 20:32:32.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-20 20:32:32.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:32.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:32.295][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-20 20:32:32.296][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-20 20:32:32.296][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:32.297][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:32.299][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-20 20:32:32.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-20 20:32:32.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:32.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:32.302][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:32.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:32.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:32.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:32.306][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:32.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:32.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:32.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:32.310][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:32.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:32.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:32.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:32.314][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:32.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:32.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:32.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:32.318][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:32.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:32.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:32.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:32.321][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:32.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:32.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:32.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:32.325][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:32.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:32.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:32.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:32.329][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:32.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:32.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:32.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:32.335][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:32.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:32.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:32.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:32.341][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:32.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:32.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:32.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:32.348][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:32.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:32.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:32.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:32.354][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:32.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:32.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:32.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:32.361][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:32.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:32.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:32.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:32.367][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:32.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:32.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:32.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:32.374][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:32.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:32.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:32.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:32.381][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:32.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:32.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:32.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:32.388][self$createEntryFromContent] Accession numbers: , 2528, 7799.
biodb.DEBUG[2025-08-20 20:32:32.390][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.DEBUG[2025-08-20 20:32:32.391][function(conn, opt)] Entries: [4]: "NULL, <environment>, <environment>, <environment>"
biodb.INFO [2025-08-20 20:32:32.412][biodb::testThat]
biodb.INFO [2025-08-20 20:32:32.414][biodb::testThat] Running test function  test.peak.table  (" The peak table is correct. ").
biodb.INFO [2025-08-20 20:32:32.416][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-20 20:32:32.418][biodb::testThat]
biodb.INFO [2025-08-20 20:32:32.458][biodb::testThat]
biodb.INFO [2025-08-20 20:32:32.460][biodb::testThat] Running test function  test.nb.entries  (" Nb entries is positive. ").
biodb.INFO [2025-08-20 20:32:32.462][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-20 20:32:32.464][biodb::testThat]
biodb.INFO [2025-08-20 20:32:32.478][biodb::testThat]
biodb.INFO [2025-08-20 20:32:32.480][biodb::testThat] Running test function  test.entry.ids  (" We can get a list of entry ids. ").
biodb.INFO [2025-08-20 20:32:32.482][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-20 20:32:32.484][biodb::testThat]
biodb.DEBUG[2025-08-20 20:32:32.488][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=1*&searchCategory=CHEBI ID&maximumResults=100&starsCategory=ALL".
biodb.DEBUG[2025-08-20 20:32:32.493][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-20 20:32:32.496][cch$loadFileContent] Trying to load 1 files from cache: [1]: "aed2cd6d5d221333c0a30a9f8dbc41b4".
biodb.TRACE[2025-08-20 20:32:32.498][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-20 20:32:32.504][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/aed2cd6d5d221333c0a30a9f8dbc41b4.content".
biodb.TRACE[2025-08-20 20:32:32.553][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-20 20:32:32.557][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-20 20:32:32.560][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:32.563][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:32.567][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:32.570][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:32.573][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:32.575][ef$get] fields variable is a list.
biodb.INFO [2025-08-20 20:32:32.579][biodb::testThat]
biodb.INFO [2025-08-20 20:32:32.581][biodb::testThat] Running test function  test.annotateMzValues  (" annotateMzValues() works correctly. ").
biodb.INFO [2025-08-20 20:32:32.583][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-20 20:32:32.585][biodb::testThat]
biodb.ERROR[2025-08-20 20:32:32.611][conn$annotateMzValues] No column named "mz" was found inside data frame.
biodb.ERROR[2025-08-20 20:32:32.642][ef$checkIsDefined] Field(s) "foo" is/are not defined.
biodb.INFO [2025-08-20 20:32:32.666][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-08-20 20:32:32.668][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2025-08-20 20:32:32.671][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2025-08-20 20:32:32.672][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-08-20 20:32:32.674][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:32.676][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:32.678][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:32.679][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:32.681][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:32.683][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-08-20 20:32:32.702][biodb::testContext]
biodb.INFO [2025-08-20 20:32:32.705][biodb::testContext] ********************************************************************************
biodb.INFO [2025-08-20 20:32:32.707][biodb::testContext] Test context - Test conversions
biodb.INFO [2025-08-20 20:32:32.709][biodb::testContext] ********************************************************************************
biodb.INFO [2025-08-20 20:32:32.711][biodb::testContext]
biodb.INFO [2025-08-20 20:32:32.715][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.16.0.
biodb.DEBUG[2025-08-20 20:32:32.719][self$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.21-bioc/R/site-library/biodb/definitions.yml".
biodb.DEBUG[2025-08-20 20:32:32.726][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-08-20 20:32:32.728][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-08-20 20:32:32.730][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-08-20 20:32:32.732][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:32.734][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:32.736][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:32.737][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-08-20 20:32:32.739][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-08-20 20:32:32.741][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:32.742][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:32.744][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:32.746][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-08-20 20:32:32.747][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-08-20 20:32:32.749][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:32.750][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:32.751][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:32.753][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-08-20 20:32:32.755][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-08-20 20:32:32.756][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-08-20 20:32:32.758][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:32.759][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:32.760][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:32.762][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-08-20 20:32:32.764][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-08-20 20:32:32.765][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-08-20 20:32:32.767][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:32.768][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:32.769][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:32.771][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-08-20 20:32:32.780][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-08-20 20:32:32.782][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:32.783][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:32.784][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:32.784][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-08-20 20:32:32.785][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-08-20 20:32:32.786][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-08-20 20:32:32.787][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:32.788][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:32.789][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:32.790][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-08-20 20:32:32.791][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-08-20 20:32:32.792][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:32.793][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:32.794][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:32.795][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-08-20 20:32:32.795][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-08-20 20:32:32.796][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-08-20 20:32:32.797][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:32.798][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:32.799][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:32.800][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-08-20 20:32:32.801][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-08-20 20:32:32.802][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-08-20 20:32:32.803][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-08-20 20:32:32.804][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-08-20 20:32:32.805][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-08-20 20:32:32.806][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:32.807][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:32.807][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:32.808][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-08-20 20:32:32.809][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-08-20 20:32:32.810][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:32.811][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:32.812][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:32.813][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-08-20 20:32:32.814][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-08-20 20:32:32.815][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:32.815][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:32.816][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:32.817][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-08-20 20:32:32.818][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-08-20 20:32:32.819][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:32.820][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:32.821][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:32.822][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-08-20 20:32:32.823][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-08-20 20:32:32.824][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:32.824][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:32.825][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:32.826][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-08-20 20:32:32.827][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-08-20 20:32:32.828][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:32.829][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:32.830][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:32.831][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-08-20 20:32:32.832][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-08-20 20:32:32.835][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-08-20 20:32:32.836][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:32.836][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:32.837][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:32.838][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-08-20 20:32:32.839][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-08-20 20:32:32.840][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-08-20 20:32:32.841][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:32.842][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:32.843][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:32.844][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-08-20 20:32:32.846][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-08-20 20:32:32.847][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-08-20 20:32:32.848][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-20 20:32:32.849][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-20 20:32:32.849][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-08-20 20:32:32.850][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-08-20 20:32:32.851][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-08-20 20:32:32.852][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-08-20 20:32:32.853][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-08-20 20:32:32.854][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-20 20:32:32.855][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-08-20 20:32:32.856][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-08-20 20:32:32.857][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-20 20:32:32.858][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-08-20 20:32:32.859][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-08-20 20:32:32.860][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-08-20 20:32:32.860][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-08-20 20:32:32.860][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-08-20 20:32:32.860][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-08-20 20:32:32.860][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-08-20 20:32:32.861][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-08-20 20:32:32.862][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-20 20:32:32.863][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-20 20:32:32.864][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-20 20:32:32.864][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-20 20:32:32.865][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-20 20:32:32.866][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-20 20:32:32.867][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-08-20 20:32:32.868][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-20 20:32:32.869][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-20 20:32:32.870][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-08-20 20:32:32.871][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-08-20 20:32:32.873][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-08-20 20:32:32.876][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-08-20 20:32:32.877][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-08-20 20:32:32.879][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-20 20:32:32.881][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-20 20:32:32.882][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-08-20 20:32:32.884][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-08-20 20:32:32.886][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-08-20 20:32:32.888][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-08-20 20:32:32.889][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-08-20 20:32:32.890][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-20 20:32:32.891][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-08-20 20:32:32.892][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-08-20 20:32:32.893][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-20 20:32:32.894][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-08-20 20:32:32.895][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-08-20 20:32:32.896][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-08-20 20:32:32.896][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-08-20 20:32:32.896][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-08-20 20:32:32.896][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-08-20 20:32:32.896][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-08-20 20:32:32.897][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-08-20 20:32:32.898][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-20 20:32:32.899][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-20 20:32:32.900][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-20 20:32:32.901][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-20 20:32:32.901][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-20 20:32:32.902][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-20 20:32:32.903][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-08-20 20:32:32.904][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-20 20:32:32.905][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-20 20:32:32.906][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-08-20 20:32:32.907][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-08-20 20:32:32.908][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-08-20 20:32:32.910][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-08-20 20:32:32.912][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-08-20 20:32:32.913][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-20 20:32:32.915][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-20 20:32:32.916][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-08-20 20:32:32.918][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-08-20 20:32:32.919][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-08-20 20:32:32.921][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-08-20 20:32:32.922][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-08-20 20:32:32.924][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-20 20:32:32.926][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-08-20 20:32:32.927][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-08-20 20:32:32.929][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-20 20:32:32.931][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-08-20 20:32:32.932][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-08-20 20:32:32.934][self$setPropertyValue] Setting property "searchable.fields" to "<NULL>".
biodb.DEBUG[2025-08-20 20:32:32.936][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-08-20 20:32:32.937][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-20 20:32:32.939][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-20 20:32:32.941][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-20 20:32:32.942][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-20 20:32:32.944][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-20 20:32:32.946][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-20 20:32:32.947][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-08-20 20:32:32.949][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-20 20:32:32.951][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-20 20:32:32.952][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-08-20 20:32:32.954][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-08-20 20:32:32.956][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-08-20 20:32:32.959][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-08-20 20:32:32.961][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-08-20 20:32:32.963][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-20 20:32:32.965][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-20 20:32:32.966][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-08-20 20:32:32.968][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-08-20 20:32:32.970][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-08-20 20:32:32.981][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-08-20 20:32:32.984][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-08-20 20:32:32.987][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-20 20:32:32.989][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-08-20 20:32:32.992][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-08-20 20:32:32.994][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-20 20:32:32.997][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-08-20 20:32:32.999][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-08-20 20:32:33.002][self$setPropertyValue] Setting property "searchable.fields" to "<NULL>".
biodb.DEBUG[2025-08-20 20:32:33.004][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-08-20 20:32:33.006][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-20 20:32:33.008][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-20 20:32:33.010][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-20 20:32:33.012][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-20 20:32:33.014][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-20 20:32:33.016][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-20 20:32:33.017][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-08-20 20:32:33.019][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-20 20:32:33.021][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-20 20:32:33.022][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-08-20 20:32:33.024][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-08-20 20:32:33.027][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-08-20 20:32:33.029][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:33.030][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:33.032][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:33.034][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:33.035][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:33.037][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:33.039][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:33.040][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:33.042][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:33.043][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:33.045][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:33.046][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:33.048][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:33.050][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:33.051][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:33.053][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:33.055][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:33.056][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:33.058][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:33.059][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:33.061][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:33.063][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:33.064][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:33.066][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:33.067][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:33.069][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:33.071][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:33.072][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:33.074][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:33.076][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:33.077][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:33.079][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:33.080][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:33.082][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:33.084][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:33.085][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:33.087][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:33.088][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:33.090][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:33.092][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:33.093][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:33.095][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:33.096][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:33.098][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:33.099][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:33.101][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:33.102][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:33.104][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:33.106][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:33.107][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:33.109][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:33.110][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:33.112][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:33.114][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:33.115][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:33.117][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:33.118][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:33.120][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:33.121][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:33.123][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:33.125][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:33.126][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:33.128][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:33.129][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:33.131][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:33.133][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:33.134][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:33.136][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:33.138][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:33.139][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:33.141][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:33.142][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:33.144][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:33.146][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:33.147][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:33.149][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:33.151][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:33.152][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:33.154][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:33.155][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:33.157][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:33.158][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:33.160][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:33.165][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:33.167][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:33.169][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:33.171][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:33.173][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-08-20 20:32:33.177][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-08-20 20:32:33.180][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-08-20 20:32:33.183][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-08-20 20:32:33.186][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-08-20 20:32:33.189][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-08-20 20:32:33.192][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-08-20 20:32:33.195][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-08-20 20:32:33.197][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-08-20 20:32:33.200][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-08-20 20:32:33.203][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-08-20 20:32:33.205][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-08-20 20:32:33.208][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-08-20 20:32:33.210][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-08-20 20:32:33.213][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-08-20 20:32:33.216][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-08-20 20:32:33.218][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-08-20 20:32:33.221][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-08-20 20:32:33.223][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-08-20 20:32:33.226][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-08-20 20:32:33.229][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-08-20 20:32:33.231][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-08-20 20:32:33.234][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-08-20 20:32:33.237][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-08-20 20:32:33.239][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-08-20 20:32:33.242][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-08-20 20:32:33.245][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-08-20 20:32:33.247][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-08-20 20:32:33.250][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-08-20 20:32:33.253][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-08-20 20:32:33.256][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-08-20 20:32:33.259][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-08-20 20:32:33.261][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-08-20 20:32:33.264][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-08-20 20:32:33.267][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-08-20 20:32:33.269][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-08-20 20:32:33.272][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-08-20 20:32:33.276][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-08-20 20:32:33.279][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-08-20 20:32:33.282][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-08-20 20:32:33.284][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-08-20 20:32:33.287][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-08-20 20:32:33.290][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-08-20 20:32:33.293][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-08-20 20:32:33.296][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-08-20 20:32:33.298][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-08-20 20:32:33.301][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-08-20 20:32:33.306][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-08-20 20:32:33.310][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-08-20 20:32:33.315][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-08-20 20:32:33.346][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-08-20 20:32:33.349][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-08-20 20:32:33.352][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-08-20 20:32:33.355][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-08-20 20:32:33.358][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-08-20 20:32:33.361][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-08-20 20:32:33.364][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-08-20 20:32:33.367][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-08-20 20:32:33.369][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-08-20 20:32:33.372][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-08-20 20:32:33.375][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-08-20 20:32:33.377][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-08-20 20:32:33.380][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-08-20 20:32:33.383][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-08-20 20:32:33.385][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-08-20 20:32:33.388][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-08-20 20:32:33.390][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-08-20 20:32:33.393][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-08-20 20:32:33.395][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-08-20 20:32:33.398][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-08-20 20:32:33.400][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-08-20 20:32:33.403][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-08-20 20:32:33.406][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-08-20 20:32:33.408][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-08-20 20:32:33.411][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-08-20 20:32:33.413][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-08-20 20:32:33.416][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-08-20 20:32:33.418][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-08-20 20:32:33.421][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-08-20 20:32:33.425][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-08-20 20:32:33.428][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-08-20 20:32:33.431][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-08-20 20:32:33.435][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-08-20 20:32:33.438][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-08-20 20:32:33.441][initialize] This is biodb version 1.16.0.
biodb.DEBUG[2025-08-20 20:32:33.443][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-08-20 20:32:33.445][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:33.446][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:33.448][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:33.450][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:33.451][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:33.453][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:33.454][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:33.456][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:33.457][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:33.459][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:33.460][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:33.462][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:33.464][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:33.465][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:33.467][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:33.468][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:33.470][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:33.472][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:33.473][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:33.475][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:33.476][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:33.478][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:33.479][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:33.481][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:33.482][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:33.484][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:33.485][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:33.487][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:33.488][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:33.490][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:33.491][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:33.493][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:33.494][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:33.496][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:33.497][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:33.499][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:33.500][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:33.502][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:33.504][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:33.505][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:33.506][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:33.508][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:33.509][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:33.511][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:33.513][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:33.514][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:33.516][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:33.517][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:33.518][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:33.520][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:33.521][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:33.523][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:33.524][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:33.526][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:33.527][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:33.529][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:33.530][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:33.532][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:33.533][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:33.535][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:33.537][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:33.538][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:33.540][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:33.541][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:33.543][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:33.545][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:33.546][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:33.548][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:33.549][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:33.551][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:33.553][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:33.554][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:33.556][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:33.557][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:33.559][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:33.561][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:33.562][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:33.564][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:33.566][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:33.567][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:33.569][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:33.571][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:33.572][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:33.574][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:33.576][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:33.577][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:33.579][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:33.581][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:33.582][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:33.584][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:33.586][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:33.587][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:33.589][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:33.590][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:33.592][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:33.594][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:33.595][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:33.597][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:33.598][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:33.600][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:33.602][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:33.603][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:33.605][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:33.607][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:33.608][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:33.610][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:33.612][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:33.614][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:33.615][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:33.617][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:33.619][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:33.620][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:33.622][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:33.624][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:33.625][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:33.627][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:33.629][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:33.631][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:33.632][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:33.634][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:33.636][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:33.637][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:33.639][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:33.642][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.21-bioc/R/site-library/biodbChebi/definitions.yml".
biodb.DEBUG[2025-08-20 20:32:33.645][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2025-08-20 20:32:33.649][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-08-20 20:32:33.651][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-08-20 20:32:33.653][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-20 20:32:33.655][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-20 20:32:33.657][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-08-20 20:32:33.659][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-08-20 20:32:33.661][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-08-20 20:32:33.663][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2025-08-20 20:32:33.665][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-08-20 20:32:33.666][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-20 20:32:33.668][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-08-20 20:32:33.670][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2025-08-20 20:32:33.672][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-20 20:32:33.674][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2025-08-20 20:32:33.674][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2025-08-20 20:32:33.674][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2025-08-20 20:32:33.674][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2025-08-20 20:32:33.674][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2025-08-20 20:32:33.674][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2025-08-20 20:32:33.674][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2025-08-20 20:32:33.674][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2025-08-20 20:32:33.674][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2025-08-20 20:32:33.674][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2025-08-20 20:32:33.674][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2025-08-20 20:32:33.676][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-08-20 20:32:33.678][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-08-20 20:32:33.678][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-08-20 20:32:33.678][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-08-20 20:32:33.680][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-08-20 20:32:33.682][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-20 20:32:33.683][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-20 20:32:33.685][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-20 20:32:33.687][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-20 20:32:33.688][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-20 20:32:33.690][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-20 20:32:33.692][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-20 20:32:33.692][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2025-08-20 20:32:33.694][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-20 20:32:33.696][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-20 20:32:33.697][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-08-20 20:32:33.699][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2025-08-20 20:32:33.699][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2025-08-20 20:32:33.702][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-08-20 20:32:33.705][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-08-20 20:32:33.708][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2025-08-20 20:32:33.711][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-08-20 20:32:33.714][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-08-20 20:32:33.717][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-08-20 20:32:33.725][super$initialize] Initialize connector chebi.
biodb.DEBUG[2025-08-20 20:32:33.727][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2025-08-20 20:32:33.730][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2025-08-20 20:32:33.736][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2025-08-20 20:32:33.739][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-08-20 20:32:33.741][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-08-20 20:32:33.744][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2025-08-20 20:32:33.747][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2025-08-20 20:32:33.750][biodb::testThat]
biodb.INFO [2025-08-20 20:32:33.752][biodb::testThat] Running test function  test_chebi_convCasToChebi  (" convCasToChebi() works. ").
biodb.INFO [2025-08-20 20:32:33.753][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-20 20:32:33.755][biodb::testThat]
biodb.DEBUG[2025-08-20 20:32:33.767][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2025-08-20 20:32:33.776][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-20 20:32:33.780][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2025-08-20 20:32:33.783][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-20 20:32:33.787][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2025-08-20 20:32:33.796][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=51-41-2&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2025-08-20 20:32:33.803][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-20 20:32:33.807][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0e2b277bfac878e1dcf7dc3f91acb8d3".
biodb.TRACE[2025-08-20 20:32:33.810][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-20 20:32:33.817][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0e2b277bfac878e1dcf7dc3f91acb8d3.content".
biodb.DEBUG[2025-08-20 20:32:33.826][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:33.833][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:33.836][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:33.862][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:33.869][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:33.875][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:33.877][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:33.888][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=87605-72-9&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2025-08-20 20:32:33.902][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-20 20:32:33.910][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b767b3e02c49727a1749efea3e381744".
biodb.TRACE[2025-08-20 20:32:33.918][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-20 20:32:33.925][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b767b3e02c49727a1749efea3e381744.content".
biodb.DEBUG[2025-08-20 20:32:33.933][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:33.940][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:33.947][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:33.970][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:33.976][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:33.978][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:33.984][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:34.033][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:34.036][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:34.038][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:34.048][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:34.050][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:34.052][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:34.054][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:34.073][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=51-41-2&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2025-08-20 20:32:34.088][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-20 20:32:34.096][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0e2b277bfac878e1dcf7dc3f91acb8d3".
biodb.TRACE[2025-08-20 20:32:34.102][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-20 20:32:34.106][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0e2b277bfac878e1dcf7dc3f91acb8d3.content".
biodb.DEBUG[2025-08-20 20:32:34.109][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:34.111][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:34.113][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:34.123][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:34.125][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:34.128][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:34.129][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:34.133][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=87605-72-9&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2025-08-20 20:32:34.139][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-20 20:32:34.143][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b767b3e02c49727a1749efea3e381744".
biodb.TRACE[2025-08-20 20:32:34.146][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-20 20:32:34.149][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b767b3e02c49727a1749efea3e381744.content".
biodb.DEBUG[2025-08-20 20:32:34.153][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:34.156][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:34.158][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:34.183][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:34.188][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:34.191][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:34.197][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:34.228][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:34.234][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:34.236][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:34.258][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:34.264][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:34.266][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:34.271][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:34.286][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=51-41-2&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2025-08-20 20:32:34.300][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-20 20:32:34.308][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0e2b277bfac878e1dcf7dc3f91acb8d3".
biodb.TRACE[2025-08-20 20:32:34.315][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-20 20:32:34.322][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0e2b277bfac878e1dcf7dc3f91acb8d3.content".
biodb.DEBUG[2025-08-20 20:32:34.326][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:34.332][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:34.337][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:34.355][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:34.357][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:34.359][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:34.360][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:34.364][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=87605-72-9&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2025-08-20 20:32:34.369][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-20 20:32:34.372][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b767b3e02c49727a1749efea3e381744".
biodb.TRACE[2025-08-20 20:32:34.375][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-20 20:32:34.377][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b767b3e02c49727a1749efea3e381744.content".
biodb.DEBUG[2025-08-20 20:32:34.380][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:34.382][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:34.383][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:34.391][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:34.393][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:34.395][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:34.397][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:34.400][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=14215-68-0&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2025-08-20 20:32:34.415][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-20 20:32:34.418][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70e3912746e7e39b39fbbffe6c90b502".
biodb.TRACE[2025-08-20 20:32:34.423][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-20 20:32:34.433][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70e3912746e7e39b39fbbffe6c90b502.content".
biodb.DEBUG[2025-08-20 20:32:34.443][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:34.446][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:34.447][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:34.468][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:34.470][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:34.477][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:34.478][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-08-20 20:32:34.490][biodb::testThat]
biodb.INFO [2025-08-20 20:32:34.492][biodb::testThat] Running test function  test_chebi_convInchiToChebi  (" convInchiToChebi() works. ").
biodb.INFO [2025-08-20 20:32:34.494][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-20 20:32:34.496][biodb::testThat]
biodb.DEBUG[2025-08-20 20:32:34.501][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=InChI=1S/C15H24/c1-9(2)11-7-8-15(4)12-6-5-10(3)14(15)13(11)12/h5,9,11-14H,6-8H2,1-4H3/t11?,12?,13?,14?,15-/m0/s1&searchCategory=INCHI/INCHI KEY&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2025-08-20 20:32:34.507][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-20 20:32:34.509][cch$loadFileContent] Trying to load 1 files from cache: [1]: "64007787a4f3864bb479683766386808".
biodb.TRACE[2025-08-20 20:32:34.512][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-20 20:32:34.522][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/64007787a4f3864bb479683766386808.content".
biodb.DEBUG[2025-08-20 20:32:34.530][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:34.532][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:34.536][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:34.552][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:34.558][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:34.559][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:34.565][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:34.577][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=VLXDPFLIRFYIME-MWHZVNNOSA-N&searchCategory=INCHI/INCHI KEY&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2025-08-20 20:32:34.595][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-20 20:32:34.598][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7547b08b3ebd50447d61026ab0af8d63".
biodb.TRACE[2025-08-20 20:32:34.601][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-20 20:32:34.610][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7547b08b3ebd50447d61026ab0af8d63.content".
biodb.DEBUG[2025-08-20 20:32:34.618][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:34.620][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:34.626][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:34.645][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:34.647][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:34.652][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:34.654][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-08-20 20:32:34.671][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-08-20 20:32:34.677][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2025-08-20 20:32:34.680][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2025-08-20 20:32:34.685][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-08-20 20:32:34.689][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:34.691][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:34.696][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:34.698][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:34.706][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:34.708][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-08-20 20:32:34.721][biodb::testContext]
biodb.INFO [2025-08-20 20:32:34.723][biodb::testContext] ********************************************************************************
biodb.INFO [2025-08-20 20:32:34.732][biodb::testContext] Test context - Test web services
biodb.INFO [2025-08-20 20:32:34.734][biodb::testContext] ********************************************************************************
biodb.INFO [2025-08-20 20:32:34.740][biodb::testContext]
biodb.INFO [2025-08-20 20:32:34.747][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.16.0.
biodb.DEBUG[2025-08-20 20:32:34.751][self$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.21-bioc/R/site-library/biodb/definitions.yml".
biodb.DEBUG[2025-08-20 20:32:34.757][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-08-20 20:32:34.759][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-08-20 20:32:34.761][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-08-20 20:32:34.763][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:34.764][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:34.765][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:34.767][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-08-20 20:32:34.769][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-08-20 20:32:34.770][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:34.772][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:34.773][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:34.775][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-08-20 20:32:34.776][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-08-20 20:32:34.778][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:34.779][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:34.781][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:34.782][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-08-20 20:32:34.784][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-08-20 20:32:34.786][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-08-20 20:32:34.787][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:34.789][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:34.790][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:34.792][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-08-20 20:32:34.793][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-08-20 20:32:34.795][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-08-20 20:32:34.796][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:34.798][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:34.799][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:34.801][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-08-20 20:32:34.802][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-08-20 20:32:34.804][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:34.805][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:34.807][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:34.808][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-08-20 20:32:34.810][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-08-20 20:32:34.812][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-08-20 20:32:34.813][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:34.815][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:34.816][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:34.818][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-08-20 20:32:34.820][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-08-20 20:32:34.821][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:34.823][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:34.824][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:34.826][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-08-20 20:32:34.827][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-08-20 20:32:34.829][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-08-20 20:32:34.831][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:34.832][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:34.834][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:34.835][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-08-20 20:32:34.837][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-08-20 20:32:34.839][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-08-20 20:32:34.840][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-08-20 20:32:34.842][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-08-20 20:32:34.844][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-08-20 20:32:34.845][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:34.847][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:34.848][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:34.850][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-08-20 20:32:34.852][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-08-20 20:32:34.853][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:34.854][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:34.856][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:34.857][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-08-20 20:32:34.859][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-08-20 20:32:34.861][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:34.862][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:34.864][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:34.865][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-08-20 20:32:34.867][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-08-20 20:32:34.869][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:34.870][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:34.872][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:34.873][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-08-20 20:32:34.875][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-08-20 20:32:34.876][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:34.878][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:34.879][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:34.881][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-08-20 20:32:34.882][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-08-20 20:32:34.884][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:34.885][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:34.886][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:34.888][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-08-20 20:32:34.889][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-08-20 20:32:34.902][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-08-20 20:32:34.903][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:34.912][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:34.914][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:34.919][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-08-20 20:32:34.925][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-08-20 20:32:34.930][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-08-20 20:32:34.932][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:34.934][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:34.939][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:34.946][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-08-20 20:32:34.953][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-08-20 20:32:34.955][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-08-20 20:32:34.960][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-20 20:32:34.962][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-20 20:32:34.968][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-08-20 20:32:34.970][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-08-20 20:32:34.975][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-08-20 20:32:34.980][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-08-20 20:32:34.982][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-08-20 20:32:34.987][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-20 20:32:34.993][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-08-20 20:32:34.995][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-08-20 20:32:35.000][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-20 20:32:35.007][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-08-20 20:32:35.009][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-08-20 20:32:35.014][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-08-20 20:32:35.014][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-08-20 20:32:35.014][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-08-20 20:32:35.014][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-08-20 20:32:35.014][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-08-20 20:32:35.016][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-08-20 20:32:35.021][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-20 20:32:35.023][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-20 20:32:35.029][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-20 20:32:35.034][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-20 20:32:35.036][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-20 20:32:35.041][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-20 20:32:35.042][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-08-20 20:32:35.050][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-20 20:32:35.052][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-20 20:32:35.059][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-08-20 20:32:35.061][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-08-20 20:32:35.067][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-08-20 20:32:35.073][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-08-20 20:32:35.075][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-08-20 20:32:35.082][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-20 20:32:35.087][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-20 20:32:35.089][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-08-20 20:32:35.099][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-08-20 20:32:35.101][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-08-20 20:32:35.107][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-08-20 20:32:35.110][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-08-20 20:32:35.116][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-20 20:32:35.119][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-08-20 20:32:35.125][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-08-20 20:32:35.131][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-20 20:32:35.133][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-08-20 20:32:35.143][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-08-20 20:32:35.146][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-08-20 20:32:35.146][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-08-20 20:32:35.146][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-08-20 20:32:35.146][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-08-20 20:32:35.146][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-08-20 20:32:35.152][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-08-20 20:32:35.163][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-20 20:32:35.165][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-20 20:32:35.175][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-20 20:32:35.185][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-20 20:32:35.188][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-20 20:32:35.198][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-20 20:32:35.200][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-08-20 20:32:35.202][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-20 20:32:35.204][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-20 20:32:35.205][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-08-20 20:32:35.207][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-08-20 20:32:35.209][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-08-20 20:32:35.213][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-08-20 20:32:35.214][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-08-20 20:32:35.216][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-20 20:32:35.218][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-20 20:32:35.220][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-08-20 20:32:35.221][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-08-20 20:32:35.223][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-08-20 20:32:35.225][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-08-20 20:32:35.226][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-08-20 20:32:35.228][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-20 20:32:35.229][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-08-20 20:32:35.231][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-08-20 20:32:35.233][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-20 20:32:35.234][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-08-20 20:32:35.236][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-08-20 20:32:35.238][self$setPropertyValue] Setting property "searchable.fields" to "<NULL>".
biodb.DEBUG[2025-08-20 20:32:35.239][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-08-20 20:32:35.241][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-20 20:32:35.242][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-20 20:32:35.244][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-20 20:32:35.245][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-20 20:32:35.247][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-20 20:32:35.249][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-20 20:32:35.250][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-08-20 20:32:35.252][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-20 20:32:35.253][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-20 20:32:35.255][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-08-20 20:32:35.257][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-08-20 20:32:35.259][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-08-20 20:32:35.262][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-08-20 20:32:35.264][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-08-20 20:32:35.266][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-20 20:32:35.267][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-20 20:32:35.269][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-08-20 20:32:35.271][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-08-20 20:32:35.273][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-08-20 20:32:35.274][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-08-20 20:32:35.276][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-08-20 20:32:35.278][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-20 20:32:35.280][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-08-20 20:32:35.297][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-08-20 20:32:35.300][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-20 20:32:35.302][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-08-20 20:32:35.304][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-08-20 20:32:35.307][self$setPropertyValue] Setting property "searchable.fields" to "<NULL>".
biodb.DEBUG[2025-08-20 20:32:35.309][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-08-20 20:32:35.311][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-20 20:32:35.313][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-20 20:32:35.314][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-20 20:32:35.316][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-20 20:32:35.318][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-20 20:32:35.319][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-20 20:32:35.321][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-08-20 20:32:35.323][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-20 20:32:35.324][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-20 20:32:35.326][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-08-20 20:32:35.328][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-08-20 20:32:35.330][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-08-20 20:32:35.331][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:35.333][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:35.335][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:35.336][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:35.338][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:35.339][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:35.341][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:35.342][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:35.344][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:35.345][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:35.347][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:35.348][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:35.350][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:35.351][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:35.353][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:35.354][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:35.356][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:35.357][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:35.358][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:35.360][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:35.361][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:35.363][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:35.364][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:35.366][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:35.367][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:35.369][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:35.370][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:35.372][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:35.373][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:35.375][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:35.376][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:35.378][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:35.380][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:35.381][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:35.383][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:35.384][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:35.385][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:35.387][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:35.388][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:35.390][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:35.391][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:35.393][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:35.394][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:35.396][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:35.397][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:35.398][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:35.400][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:35.401][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:35.403][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:35.404][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:35.406][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:35.408][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:35.409][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:35.411][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:35.412][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:35.414][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:35.415][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:35.417][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:35.418][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:35.420][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:35.421][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:35.423][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:35.424][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:35.426][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:35.427][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:35.429][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:35.430][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:35.432][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:35.434][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:35.435][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:35.437][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:35.438][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:35.440][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:35.441][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:35.443][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:35.444][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:35.446][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:35.447][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:35.449][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:35.450][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:35.452][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:35.454][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:35.455][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:35.457][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:35.458][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:35.460][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:35.461][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:35.463][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-08-20 20:32:35.465][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-08-20 20:32:35.468][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-08-20 20:32:35.470][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-08-20 20:32:35.473][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-08-20 20:32:35.476][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-08-20 20:32:35.479][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-08-20 20:32:35.481][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-08-20 20:32:35.484][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-08-20 20:32:35.487][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-08-20 20:32:35.490][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-08-20 20:32:35.493][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-08-20 20:32:35.495][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-08-20 20:32:35.499][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-08-20 20:32:35.501][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-08-20 20:32:35.504][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-08-20 20:32:35.507][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-08-20 20:32:35.509][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-08-20 20:32:35.512][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-08-20 20:32:35.515][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-08-20 20:32:35.518][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-08-20 20:32:35.521][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-08-20 20:32:35.523][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-08-20 20:32:35.526][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-08-20 20:32:35.529][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-08-20 20:32:35.532][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-08-20 20:32:35.534][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-08-20 20:32:35.537][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-08-20 20:32:35.539][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-08-20 20:32:35.542][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-08-20 20:32:35.544][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-08-20 20:32:35.547][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-08-20 20:32:35.549][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-08-20 20:32:35.552][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-08-20 20:32:35.554][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-08-20 20:32:35.557][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-08-20 20:32:35.559][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-08-20 20:32:35.562][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-08-20 20:32:35.564][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-08-20 20:32:35.567][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-08-20 20:32:35.569][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-08-20 20:32:35.572][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-08-20 20:32:35.574][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-08-20 20:32:35.577][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-08-20 20:32:35.580][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-08-20 20:32:35.582][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-08-20 20:32:35.585][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-08-20 20:32:35.588][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-08-20 20:32:35.590][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-08-20 20:32:35.593][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-08-20 20:32:35.595][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-08-20 20:32:35.598][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-08-20 20:32:35.601][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-08-20 20:32:35.604][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-08-20 20:32:35.606][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-08-20 20:32:35.609][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-08-20 20:32:35.612][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-08-20 20:32:35.614][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-08-20 20:32:35.617][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-08-20 20:32:35.620][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-08-20 20:32:35.622][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-08-20 20:32:35.625][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-08-20 20:32:35.627][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-08-20 20:32:35.629][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-08-20 20:32:35.632][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-08-20 20:32:35.635][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-08-20 20:32:35.637][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-08-20 20:32:35.640][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-08-20 20:32:35.642][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-08-20 20:32:35.645][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-08-20 20:32:35.647][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-08-20 20:32:35.650][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-08-20 20:32:35.652][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-08-20 20:32:35.655][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-08-20 20:32:35.658][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-08-20 20:32:35.660][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-08-20 20:32:35.663][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-08-20 20:32:35.665][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-08-20 20:32:35.668][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-08-20 20:32:35.671][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-08-20 20:32:35.674][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-08-20 20:32:35.677][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-08-20 20:32:35.679][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-08-20 20:32:35.682][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-08-20 20:32:35.686][initialize] This is biodb version 1.16.0.
biodb.DEBUG[2025-08-20 20:32:35.688][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-08-20 20:32:35.690][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:35.692][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:35.693][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:35.695][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:35.697][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:35.699][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:35.701][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:35.702][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:35.704][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:35.706][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:35.708][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:35.709][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:35.711][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:35.713][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:35.715][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:35.716][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:35.718][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:35.720][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:35.722][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:35.723][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:35.725][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:35.727][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:35.728][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:35.730][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:35.732][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:35.734][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:35.735][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:35.737][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:35.739][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:35.740][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:35.742][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:35.744][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:35.746][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:35.748][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:35.749][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:35.751][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:35.753][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:35.755][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:35.756][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:35.758][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:35.760][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:35.762][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:35.763][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:35.765][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:35.767][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:35.769][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:35.770][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:35.772][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:35.774][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:35.776][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:35.777][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:35.779][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:35.781][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:35.783][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:35.784][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:35.786][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:35.787][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:35.789][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:35.791][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:35.792][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:35.794][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:35.795][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:35.797][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:35.798][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:35.800][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:35.801][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:35.803][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:35.805][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:35.806][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:35.807][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:35.809][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:35.811][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:35.812][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:35.814][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:35.815][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:35.817][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:35.819][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:35.820][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:35.822][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:35.823][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:35.825][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:35.826][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:35.828][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:35.829][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:35.831][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:35.832][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:35.834][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:35.836][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:35.837][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:35.839][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:35.840][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:35.842][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:35.844][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:35.845][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:35.847][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:35.849][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:35.850][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:35.852][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:35.853][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:35.855][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:35.856][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:35.858][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:35.860][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:35.861][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:35.863][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:35.864][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:35.866][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:35.868][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:35.869][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:35.871][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:35.872][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:35.874][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:35.876][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:35.878][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:35.879][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:35.881][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:35.883][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:35.884][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:35.886][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:35.888][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:35.890][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:35.912][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:35.916][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:35.921][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.21-bioc/R/site-library/biodbChebi/definitions.yml".
biodb.DEBUG[2025-08-20 20:32:35.925][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2025-08-20 20:32:35.930][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-08-20 20:32:35.933][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-08-20 20:32:35.935][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-20 20:32:35.938][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-20 20:32:35.940][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-08-20 20:32:35.942][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-08-20 20:32:35.944][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-08-20 20:32:35.946][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2025-08-20 20:32:35.948][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-08-20 20:32:35.950][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-20 20:32:35.952][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-08-20 20:32:35.954][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2025-08-20 20:32:35.955][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-20 20:32:35.957][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2025-08-20 20:32:35.957][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2025-08-20 20:32:35.957][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2025-08-20 20:32:35.957][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2025-08-20 20:32:35.957][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2025-08-20 20:32:35.957][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2025-08-20 20:32:35.957][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2025-08-20 20:32:35.957][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2025-08-20 20:32:35.957][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2025-08-20 20:32:35.957][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2025-08-20 20:32:35.957][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2025-08-20 20:32:35.960][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-08-20 20:32:35.962][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-08-20 20:32:35.962][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-08-20 20:32:35.962][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-08-20 20:32:35.963][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-08-20 20:32:35.965][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-20 20:32:35.967][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-20 20:32:35.969][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-20 20:32:35.970][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-20 20:32:35.972][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-20 20:32:35.973][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-20 20:32:35.975][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-20 20:32:35.975][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2025-08-20 20:32:35.977][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-20 20:32:35.978][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-20 20:32:35.980][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-08-20 20:32:35.982][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2025-08-20 20:32:35.982][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2025-08-20 20:32:35.984][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-08-20 20:32:35.987][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-08-20 20:32:35.990][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2025-08-20 20:32:35.992][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-08-20 20:32:35.995][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-08-20 20:32:35.998][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-08-20 20:32:36.005][super$initialize] Initialize connector chebi.
biodb.DEBUG[2025-08-20 20:32:36.007][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2025-08-20 20:32:36.009][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2025-08-20 20:32:36.012][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2025-08-20 20:32:36.015][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-08-20 20:32:36.016][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-08-20 20:32:36.019][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2025-08-20 20:32:36.021][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2025-08-20 20:32:36.024][biodb::testThat]
biodb.INFO [2025-08-20 20:32:36.025][biodb::testThat] Running test function  test.chebi.wsGetLiteEntity  (" Web service getLiteEntity works fine. ").
biodb.INFO [2025-08-20 20:32:36.027][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-20 20:32:36.029][biodb::testThat]
biodb.DEBUG[2025-08-20 20:32:36.035][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2025-08-20 20:32:36.042][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-20 20:32:36.045][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2025-08-20 20:32:36.048][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-20 20:32:36.051][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2025-08-20 20:32:36.058][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=2571&searchCategory=CHEBI ID&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2025-08-20 20:32:36.065][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-20 20:32:36.068][cch$loadFileContent] Trying to load 1 files from cache: [1]: "04c26672f8368e71348af4b34238160e".
biodb.TRACE[2025-08-20 20:32:36.072][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-20 20:32:36.078][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/04c26672f8368e71348af4b34238160e.content".
biodb.INFO [2025-08-20 20:32:36.116][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-08-20 20:32:36.123][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2025-08-20 20:32:36.130][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2025-08-20 20:32:36.133][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-08-20 20:32:36.135][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:36.137][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:36.139][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:36.142][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:36.144][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:36.146][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-08-20 20:32:36.154][biodb::testContext]
biodb.INFO [2025-08-20 20:32:36.156][biodb::testContext] ********************************************************************************
biodb.INFO [2025-08-20 20:32:36.159][biodb::testContext] Test context - Non regression tests
biodb.INFO [2025-08-20 20:32:36.161][biodb::testContext] ********************************************************************************
biodb.INFO [2025-08-20 20:32:36.163][biodb::testContext]
biodb.INFO [2025-08-20 20:32:36.167][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.16.0.
biodb.DEBUG[2025-08-20 20:32:36.171][self$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.21-bioc/R/site-library/biodb/definitions.yml".
biodb.DEBUG[2025-08-20 20:32:36.179][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-08-20 20:32:36.186][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-08-20 20:32:36.192][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-08-20 20:32:36.199][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:36.201][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:36.203][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:36.210][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-08-20 20:32:36.213][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-08-20 20:32:36.222][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:36.229][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:36.236][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:36.238][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-08-20 20:32:36.244][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-08-20 20:32:36.247][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:36.253][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:36.259][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:36.262][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-08-20 20:32:36.268][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-08-20 20:32:36.274][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-08-20 20:32:36.280][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:36.282][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:36.288][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:36.294][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-08-20 20:32:36.301][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-08-20 20:32:36.304][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-08-20 20:32:36.310][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:36.313][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:36.319][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:36.321][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-08-20 20:32:36.327][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-08-20 20:32:36.332][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:36.334][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:36.340][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:36.347][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-08-20 20:32:36.349][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-08-20 20:32:36.356][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-08-20 20:32:36.362][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:36.365][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:36.371][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:36.377][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-08-20 20:32:36.379][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-08-20 20:32:36.385][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:36.387][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:36.393][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:36.395][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-08-20 20:32:36.405][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-08-20 20:32:36.410][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-08-20 20:32:36.412][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:36.418][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:36.424][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:36.426][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-08-20 20:32:36.432][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-08-20 20:32:36.438][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-08-20 20:32:36.441][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-08-20 20:32:36.447][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-08-20 20:32:36.454][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-08-20 20:32:36.456][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:36.462][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:36.464][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:36.471][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-08-20 20:32:36.477][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-08-20 20:32:36.480][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:36.482][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:36.488][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:36.494][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-08-20 20:32:36.497][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-08-20 20:32:36.502][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:36.508][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:36.511][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:36.513][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-08-20 20:32:36.515][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-08-20 20:32:36.517][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:36.518][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:36.520][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:36.522][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-08-20 20:32:36.523][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-08-20 20:32:36.525][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:36.526][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:36.528][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:36.530][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-08-20 20:32:36.531][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-08-20 20:32:36.533][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:36.534][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:36.536][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:36.537][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-08-20 20:32:36.539][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-08-20 20:32:36.551][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-08-20 20:32:36.553][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:36.560][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:36.565][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:36.572][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-08-20 20:32:36.578][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-08-20 20:32:36.581][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-08-20 20:32:36.583][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:36.589][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:36.591][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:36.596][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-08-20 20:32:36.604][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-08-20 20:32:36.611][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-08-20 20:32:36.617][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-20 20:32:36.619][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-20 20:32:36.621][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-08-20 20:32:36.622][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-08-20 20:32:36.629][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-08-20 20:32:36.635][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-08-20 20:32:36.641][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-08-20 20:32:36.644][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-20 20:32:36.650][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-08-20 20:32:36.655][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-08-20 20:32:36.658][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-20 20:32:36.663][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-08-20 20:32:36.669][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-08-20 20:32:36.672][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-08-20 20:32:36.672][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-08-20 20:32:36.672][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-08-20 20:32:36.672][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-08-20 20:32:36.672][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-08-20 20:32:36.678][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-08-20 20:32:36.681][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-20 20:32:36.682][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-20 20:32:36.689][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-20 20:32:36.691][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-20 20:32:36.697][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-20 20:32:36.706][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-20 20:32:36.708][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-08-20 20:32:36.715][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-20 20:32:36.720][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-20 20:32:36.723][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-08-20 20:32:36.725][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-08-20 20:32:36.732][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-08-20 20:32:36.740][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-08-20 20:32:36.746][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-08-20 20:32:36.749][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-20 20:32:36.755][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-20 20:32:36.761][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-08-20 20:32:36.763][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-08-20 20:32:36.765][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-08-20 20:32:36.767][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-08-20 20:32:36.777][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-08-20 20:32:36.779][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-20 20:32:36.781][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-08-20 20:32:36.782][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-08-20 20:32:36.784][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-20 20:32:36.786][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-08-20 20:32:36.788][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-08-20 20:32:36.789][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-08-20 20:32:36.789][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-08-20 20:32:36.789][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-08-20 20:32:36.789][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-08-20 20:32:36.789][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-08-20 20:32:36.791][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-08-20 20:32:36.793][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-20 20:32:36.794][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-20 20:32:36.796][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-20 20:32:36.797][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-20 20:32:36.799][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-20 20:32:36.801][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-20 20:32:36.802][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-08-20 20:32:36.804][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-20 20:32:36.805][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-20 20:32:36.807][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-08-20 20:32:36.809][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-08-20 20:32:36.811][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-08-20 20:32:36.814][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-08-20 20:32:36.815][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-08-20 20:32:36.817][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-20 20:32:36.819][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-20 20:32:36.825][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-08-20 20:32:36.827][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-08-20 20:32:36.828][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-08-20 20:32:36.834][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-08-20 20:32:36.836][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-08-20 20:32:36.842][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-20 20:32:36.848][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-08-20 20:32:36.850][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-08-20 20:32:36.852][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-20 20:32:36.858][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-08-20 20:32:36.860][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-08-20 20:32:36.866][self$setPropertyValue] Setting property "searchable.fields" to "<NULL>".
biodb.DEBUG[2025-08-20 20:32:36.872][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-08-20 20:32:36.874][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-20 20:32:36.880][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-20 20:32:36.886][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-20 20:32:36.888][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-20 20:32:36.889][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-20 20:32:36.891][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-20 20:32:36.897][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-08-20 20:32:36.899][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-20 20:32:36.905][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-20 20:32:36.911][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-08-20 20:32:36.913][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-08-20 20:32:36.919][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-08-20 20:32:36.922][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-08-20 20:32:36.928][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-08-20 20:32:36.930][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-20 20:32:36.937][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-20 20:32:36.943][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-08-20 20:32:36.949][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-08-20 20:32:36.952][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-08-20 20:32:36.958][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-08-20 20:32:36.960][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-08-20 20:32:36.964][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-20 20:32:36.970][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-08-20 20:32:36.973][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-08-20 20:32:36.978][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-20 20:32:36.984][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-08-20 20:32:36.986][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-08-20 20:32:36.992][self$setPropertyValue] Setting property "searchable.fields" to "<NULL>".
biodb.DEBUG[2025-08-20 20:32:36.999][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-08-20 20:32:37.001][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-20 20:32:37.003][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-20 20:32:37.009][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-20 20:32:37.011][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-20 20:32:37.020][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-20 20:32:37.022][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-20 20:32:37.024][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-08-20 20:32:37.030][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-20 20:32:37.032][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-20 20:32:37.038][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-08-20 20:32:37.044][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-08-20 20:32:37.047][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-08-20 20:32:37.048][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:37.050][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:37.056][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:37.061][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:37.063][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:37.065][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:37.070][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:37.071][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:37.077][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:37.079][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:37.085][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:37.091][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:37.094][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:37.100][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:37.106][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:37.108][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:37.110][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:37.112][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:37.146][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:37.151][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:37.153][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:37.162][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:37.165][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:37.167][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:37.173][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:37.179][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:37.185][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:37.188][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:37.190][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:37.196][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:37.198][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:37.200][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:37.202][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:37.204][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:37.205][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:37.207][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:37.209][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:37.210][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:37.212][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:37.213][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:37.215][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:37.216][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:37.218][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:37.219][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:37.221][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:37.222][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:37.224][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:37.226][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:37.227][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:37.229][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:37.230][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:37.232][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:37.233][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:37.235][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:37.236][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:37.237][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:37.239][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:37.240][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:37.242][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:37.243][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:37.244][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:37.246][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:37.247][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:37.249][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:37.250][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:37.252][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:37.253][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:37.255][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:37.256][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:37.257][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:37.259][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:37.261][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:37.262][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:37.264][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:37.265][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:37.267][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:37.268][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:37.270][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:37.271][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:37.272][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:37.274][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:37.280][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:37.282][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:37.287][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:37.290][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:37.296][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:37.301][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:37.304][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-08-20 20:32:37.315][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-08-20 20:32:37.318][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-08-20 20:32:37.323][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-08-20 20:32:37.329][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-08-20 20:32:37.336][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-08-20 20:32:37.343][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-08-20 20:32:37.350][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-08-20 20:32:37.353][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-08-20 20:32:37.360][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-08-20 20:32:37.367][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-08-20 20:32:37.371][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-08-20 20:32:37.374][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-08-20 20:32:37.384][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-08-20 20:32:37.390][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-08-20 20:32:37.396][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-08-20 20:32:37.403][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-08-20 20:32:37.405][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-08-20 20:32:37.412][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-08-20 20:32:37.420][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-08-20 20:32:37.427][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-08-20 20:32:37.434][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-08-20 20:32:37.442][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-08-20 20:32:37.445][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-08-20 20:32:37.452][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-08-20 20:32:37.458][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-08-20 20:32:37.468][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-08-20 20:32:37.475][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-08-20 20:32:37.483][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-08-20 20:32:37.489][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-08-20 20:32:37.497][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-08-20 20:32:37.504][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-08-20 20:32:37.510][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-08-20 20:32:37.514][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-08-20 20:32:37.517][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-08-20 20:32:37.520][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-08-20 20:32:37.523][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-08-20 20:32:37.526][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-08-20 20:32:37.528][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-08-20 20:32:37.531][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-08-20 20:32:37.534][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-08-20 20:32:37.536][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-08-20 20:32:37.539][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-08-20 20:32:37.542][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-08-20 20:32:37.545][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-08-20 20:32:37.547][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-08-20 20:32:37.550][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-08-20 20:32:37.553][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-08-20 20:32:37.556][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-08-20 20:32:37.558][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-08-20 20:32:37.561][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-08-20 20:32:37.564][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-08-20 20:32:37.567][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-08-20 20:32:37.569][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-08-20 20:32:37.572][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-08-20 20:32:37.575][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-08-20 20:32:37.578][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-08-20 20:32:37.581][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-08-20 20:32:37.583][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-08-20 20:32:37.586][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-08-20 20:32:37.593][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-08-20 20:32:37.601][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-08-20 20:32:37.604][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-08-20 20:32:37.612][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-08-20 20:32:37.620][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-08-20 20:32:37.628][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-08-20 20:32:37.635][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-08-20 20:32:37.643][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-08-20 20:32:37.651][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-08-20 20:32:37.658][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-08-20 20:32:37.661][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-08-20 20:32:37.669][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-08-20 20:32:37.677][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-08-20 20:32:37.685][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-08-20 20:32:37.696][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-08-20 20:32:37.703][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-08-20 20:32:37.711][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-08-20 20:32:37.719][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-08-20 20:32:37.728][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-08-20 20:32:37.740][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-08-20 20:32:37.749][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-08-20 20:32:37.753][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-08-20 20:32:37.761][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-08-20 20:32:37.766][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-08-20 20:32:37.770][initialize] This is biodb version 1.16.0.
biodb.DEBUG[2025-08-20 20:32:37.773][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-08-20 20:32:37.775][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:37.778][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:37.780][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:37.782][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:37.784][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:37.786][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:37.788][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:37.790][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:37.792][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:37.794][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:37.796][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:37.798][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:37.800][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:37.801][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:37.803][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:37.805][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:37.807][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:37.809][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:37.811][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:37.812][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:37.814][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:37.816][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:37.818][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:37.819][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:37.821][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:37.823][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:37.825][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:37.827][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:37.829][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:37.830][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:37.832][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:37.834][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:37.836][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:37.838][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:37.840][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:37.845][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:37.848][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:37.854][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:37.857][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:37.859][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:37.869][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:37.871][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:37.877][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:37.880][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:37.887][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:37.893][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:37.900][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:37.906][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:37.909][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:37.911][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:37.913][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:37.919][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:37.926][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:37.932][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:37.935][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:37.941][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:37.947][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:37.949][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:37.956][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:37.962][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:37.968][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:37.971][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:37.973][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:37.974][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:37.984][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:37.986][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:37.988][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:37.994][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:37.996][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:38.002][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:38.008][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:38.011][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:38.017][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:38.024][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:38.027][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:38.033][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:38.039][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:38.045][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:38.047][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:38.054][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:38.057][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:38.064][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:38.066][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:38.068][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:38.070][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:38.071][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:38.073][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:38.075][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:38.077][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:38.079][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:38.080][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:38.082][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:38.084][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:38.085][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:38.087][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:38.089][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:38.090][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:38.092][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:38.094][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:38.095][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:38.097][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:38.099][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:38.100][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:38.102][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:38.103][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:38.105][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:38.107][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:38.108][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:38.110][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:38.112][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:38.113][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:38.115][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:38.117][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:38.118][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:38.120][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:38.122][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:38.124][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-20 20:32:38.125][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:38.127][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:38.129][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:38.130][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:38.132][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:38.134][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-20 20:32:38.137][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.21-bioc/R/site-library/biodbChebi/definitions.yml".
biodb.DEBUG[2025-08-20 20:32:38.140][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2025-08-20 20:32:38.145][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-08-20 20:32:38.147][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-08-20 20:32:38.149][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-20 20:32:38.151][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-20 20:32:38.153][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-08-20 20:32:38.156][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-08-20 20:32:38.158][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-08-20 20:32:38.160][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2025-08-20 20:32:38.162][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-08-20 20:32:38.164][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-20 20:32:38.166][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-08-20 20:32:38.168][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2025-08-20 20:32:38.170][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-20 20:32:38.172][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2025-08-20 20:32:38.172][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2025-08-20 20:32:38.172][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2025-08-20 20:32:38.172][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2025-08-20 20:32:38.172][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2025-08-20 20:32:38.172][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2025-08-20 20:32:38.172][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2025-08-20 20:32:38.172][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2025-08-20 20:32:38.172][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2025-08-20 20:32:38.172][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2025-08-20 20:32:38.172][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2025-08-20 20:32:38.174][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-08-20 20:32:38.176][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-08-20 20:32:38.176][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-08-20 20:32:38.176][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-08-20 20:32:38.178][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-08-20 20:32:38.180][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-20 20:32:38.182][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-20 20:32:38.184][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-20 20:32:38.186][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-20 20:32:38.188][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-20 20:32:38.190][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-20 20:32:38.192][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-20 20:32:38.192][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2025-08-20 20:32:38.194][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-20 20:32:38.196][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-20 20:32:38.198][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-08-20 20:32:38.221][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2025-08-20 20:32:38.221][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2025-08-20 20:32:38.224][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-08-20 20:32:38.229][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-08-20 20:32:38.233][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2025-08-20 20:32:38.237][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-08-20 20:32:38.241][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-08-20 20:32:38.244][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-08-20 20:32:38.252][super$initialize] Initialize connector chebi.
biodb.DEBUG[2025-08-20 20:32:38.256][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2025-08-20 20:32:38.259][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2025-08-20 20:32:38.262][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2025-08-20 20:32:38.265][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-08-20 20:32:38.268][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-08-20 20:32:38.271][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2025-08-20 20:32:38.273][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2025-08-20 20:32:38.277][biodb::testThat]
biodb.INFO [2025-08-20 20:32:38.279][biodb::testThat] Running test function  test.chebi.encoding.issue.in.xml  (" ChEBI encoding issue in XML is handled. ").
biodb.INFO [2025-08-20 20:32:38.281][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-20 20:32:38.283][biodb::testThat]
biodb.DEBUG[2025-08-20 20:32:38.291][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2025-08-20 20:32:38.300][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-20 20:32:38.304][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2025-08-20 20:32:38.308][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-20 20:32:38.312][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2025-08-20 20:32:38.321][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=2571&searchCategory=CHEBI ID&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2025-08-20 20:32:38.329][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-08-20 20:32:38.333][cch$loadFileContent] Trying to load 1 files from cache: [1]: "04c26672f8368e71348af4b34238160e".
biodb.TRACE[2025-08-20 20:32:38.337][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-20 20:32:38.340][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/04c26672f8368e71348af4b34238160e.content".
biodb.DEBUG[2025-08-20 20:32:38.352][private$loadEntries] Creating entries from ids [1]: "2571".
biodb.DEBUG[2025-08-20 20:32:38.355][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-08-20 20:32:38.360][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2571".
biodb.TRACE[2025-08-20 20:32:38.363][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-20 20:32:38.371][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2571.xml".
biodb.DEBUG[2025-08-20 20:32:38.379][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-20 20:32:38.387][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-20 20:32:38.390][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-20 20:32:38.402][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-20 20:32:38.404][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:38.411][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:38.435][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:38.437][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:38.440][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:38.442][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-20 20:32:38.453][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:38.456][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:38.458][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:38.460][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:38.464][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:38.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:38.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:38.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:38.473][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-20 20:32:38.476][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-20 20:32:38.478][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:38.480][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:38.484][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-20 20:32:38.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-20 20:32:38.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:38.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:38.502][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-20 20:32:38.509][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-20 20:32:38.512][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:38.518][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:38.528][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-20 20:32:38.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-20 20:32:38.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:38.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:38.557][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-20 20:32:38.565][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-20 20:32:38.572][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:38.579][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:38.587][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-20 20:32:38.590][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-20 20:32:38.600][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:38.607][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:38.616][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-20 20:32:38.622][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-20 20:32:38.628][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:38.631][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:38.644][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-20 20:32:38.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-20 20:32:38.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:38.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:38.673][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-20 20:32:38.676][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:38.684][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:38.691][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:38.705][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-20 20:32:38.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-20 20:32:38.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:38.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:38.730][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:38.738][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:38.750][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:38.753][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:38.762][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:38.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-20 20:32:38.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:38.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:38.789][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-20 20:32:38.792][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-20 20:32:38.800][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:38.807][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:38.813][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-20 20:32:38.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-20 20:32:38.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:38.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:38.824][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-20 20:32:38.827][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-20 20:32:38.829][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:38.831][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:38.836][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-20 20:32:38.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-20 20:32:38.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:38.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:38.846][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-20 20:32:38.848][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-20 20:32:38.851][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:38.853][ef$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:38.857][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-20 20:32:38.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-20 20:32:38.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:38.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:38.868][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:38.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:38.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:38.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:38.891][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:38.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:38.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:38.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:38.917][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:38.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:38.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:38.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:38.938][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-20 20:32:38.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-20 20:32:38.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:38.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:38.949][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:38.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:38.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:38.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:38.959][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:38.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:38.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:38.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:38.967][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:38.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:38.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:38.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:38.977][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:38.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:38.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:38.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:38.986][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:38.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:38.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:38.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-20 20:32:39.002][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-20 20:32:39.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-20 20:32:39.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-20 20:32:39.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-20 20:32:39.024][self$createEntryFromContent] Accession numbers: 2571.
biodb.INFO [2025-08-20 20:32:39.045][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-08-20 20:32:39.049][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2025-08-20 20:32:39.055][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2025-08-20 20:32:39.064][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-08-20 20:32:39.067][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-20 20:32:39.069][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-20 20:32:39.074][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-20 20:32:39.083][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-20 20:32:39.086][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-08-20 20:32:39.092][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 358 ]
> 
> proc.time()
   user  system elapsed 
 17.602   0.837  22.726

Example timings

biodbChebi.Rcheck/biodbChebi-Ex.timings

name	user	system	elapsed
ChebiConn	0.715	0.055	0.772
ChebiEntry	0.142	0.000	0.143