Multiple platform build/check report for BioC 3.20 - BUILD results for bioassayR on palomino6

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 22.04.3 LTS)	x86_64	4.4.1 (2024-06-14) -- "Race for Your Life"	4677
palomino6	Windows Server 2022 Datacenter	x64	4.4.1 (2024-06-14 ucrt) -- "Race for Your Life"	4416
lconway	macOS 12.7.1 Monterey	x86_64	4.4.1 (2024-06-14) -- "Race for Your Life"	4444
kjohnson3	macOS 13.6.5 Ventura	arm64	4.4.1 (2024-06-14) -- "Race for Your Life"	4393
palomino8	Windows Server 2022 Datacenter	x64	4.4.1 (2024-06-14 ucrt) -- "Race for Your Life"	4373
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for bioassayR on palomino6

To the developers/maintainers of the bioassayR package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/bioassayR.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: bioassayR

Version: 1.43.0

Command: chmod a+r bioassayR -R && C:\Users\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data bioassayR

StartedAt: 2024-07-15 16:43:09 -0400 (Mon, 15 Jul 2024)

EndedAt: 2024-07-15 16:43:49 -0400 (Mon, 15 Jul 2024)

EllapsedTime: 40.1 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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###
### Running command:
###
###   chmod a+r bioassayR -R && C:\Users\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data bioassayR
###
##############################################################################
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* checking for file 'bioassayR/DESCRIPTION' ... OK
* preparing 'bioassayR':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'bioassayR.Rmd' using rmarkdown

Quitting from lines 30-37 [setup] (bioassayR.Rmd)
Error: processing vignette 'bioassayR.Rmd' failed with diagnostics:
there is no package called 'cellHTS2'
--- failed re-building 'bioassayR.Rmd'

#"C:/Users/BIOCBU~1/BBS-3~1.20-/R/bin/Rscript" -e "library(knitr); knit2html('bioassayR.Rmd',options=c('toc',markdown::markdownHTMLOptions(TRUE)))"
#"C:/Users/BIOCBU~1/BBS-3~1.20-/R/bin/Rscript" -e "library(knitr); knit('bioassayR.Rmd')"
#pandoc --self-contained --output bioassayR.html -H header.html --from markdown --smart --table-of-contents --template html.template bioassayR.md;
#"C:/Users/BIOCBU~1/BBS-3~1.20-/R/bin/Rscript" -e "library(knitrBootstrap); knit_bootstrap('bioassayR.Rmd',show_code=TRUE)"
"C:/Users/BIOCBU~1/BBS-3~1.20-/R/bin/Rscript" -e "library(rmarkdown); library(BiocStyle); rmarkdown::render('bioassayR.Rmd')"

Attaching package: 'BiocStyle'

The following objects are masked from 'package:rmarkdown':

    html_document, md_document, pdf_document



processing file: bioassayR.Rmd
1/143                   
2/143 [style]           
3/143                   
4/143 [setup]           
Error in `library()`:
! there is no package called 'cellHTS2'
Backtrace:
 1. base::suppressPackageStartupMessages(...)
 3. base::library(cellHTS2)

Quitting from lines 30-37 [setup] (bioassayR.Rmd)
Execution halted
make: *** [Makefile:8: all] Error 1
Error in tools::buildVignettes(dir = ".", tangle = TRUE) : 
  running 'make' failed
Execution halted