Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2024-11-20 12:02 -0500 (Wed, 20 Nov 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
teran2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4481 |
nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4479 |
palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" | 4359 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4539 |
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4493 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 165/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
bgx 1.72.0 (landing page) Ernest Turro
| teran2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | ERROR | skipped | ||||||||||
palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | WARNINGS | OK | |||||||||
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | OK | ||||||||||
To the developers/maintainers of the bgx package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/bgx.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: bgx |
Version: 1.72.0 |
Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD INSTALL bgx |
StartedAt: 2024-11-19 15:39:14 -0500 (Tue, 19 Nov 2024) |
EndedAt: 2024-11-19 15:39:38 -0500 (Tue, 19 Nov 2024) |
EllapsedTime: 23.8 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD INSTALL bgx ### ############################################################################## ############################################################################## * installing to library ‘/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library’ * installing *source* package ‘bgx’ ... ** using staged installation checking for gcc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for C compiler vendor... gnu checking whether C compiler accepts -ffast-math... yes checking whether C compiler accepts -O3... yes checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking for gcc architecture flag... checking for x86 cpuid 0 output... d:68747541:444d4163:69746e65 checking for x86 cpuid 1 output... a00f11:6000800:fffa3203:78bfbff checking whether C compiler accepts -march=k8... yes checking for gcc architecture flag... -march=k8 checking for gcc option to accept ISO C99... none needed checking for main in -lm... yes Untarring Boost header files... tar: Ignoring unknown extended header keyword 'SCHILY.fflags' checking for an ANSI C-conforming const... yes checking for inline... inline configure: creating ./config.status config.status: creating src/Makevars ** libs using C compiler: ‘gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I ../boostIncl -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -g -O2 -Wall -ffast-math -O3 -DUSING_R -c bgx.cc -o bgx.o In file included from bgx.cc:32: rand.hh: In member function ‘RealType Rand<GenType, RealType>::Normal()’: rand.hh:399:7: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 399 | if(u0<.5) return y; return -y; | ^~ rand.hh:399:27: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 399 | if(u0<.5) return y; return -y; | ^~~~~~ rand.hh:406:7: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 406 | if(u0<.5) return y; return -y; | ^~ rand.hh:406:27: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 406 | if(u0<.5) return y; return -y; | ^~~~~~ rand.hh:413:7: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 413 | if(u0<.5) return y; return -y; | ^~ rand.hh:413:27: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 413 | if(u0<.5) return y; return -y; | ^~~~~~ rand.hh:420:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 420 | if(u0<.5) return y; return -y; | ^~ rand.hh:420:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 420 | if(u0<.5) return y; return -y; | ^~~~~~ g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I ../boostIncl -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -g -O2 -Wall -ffast-math -O3 -DUSING_R -c bgx_frontend.cc -o bgx_frontend.o gcc -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I ../boostIncl -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -g -O2 -Wall -march=k8 -ffast-math -O3 -c qnorm.c -o qnorm.o g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I ../boostIncl -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -g -O2 -Wall -ffast-math -O3 -DUSING_R -c rundir.cc -o rundir.o g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I ../boostIncl -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -g -O2 -Wall -ffast-math -O3 -DUSING_R -c sokal.cc -o sokal.o g++ -std=gnu++17 -shared -L/home/biocbuild/bbs-3.20-bioc/R/lib -L/usr/local/lib -o bgx.so bgx.o bgx_frontend.o qnorm.o rundir.o sokal.o -lm -L/home/biocbuild/bbs-3.20-bioc/R/lib -lR rm -r ../boostIncl installing to /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/00LOCK-bgx/00new/bgx/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (bgx)