Multiple platform build/check report for BioC 3.20 - BUILD results for beadarray on palomino6

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 22.04.3 LTS)	x86_64	4.4.1 (2024-06-14) -- "Race for Your Life"	4677
palomino6	Windows Server 2022 Datacenter	x64	4.4.1 (2024-06-14 ucrt) -- "Race for Your Life"	4416
lconway	macOS 12.7.1 Monterey	x86_64	4.4.1 (2024-06-14) -- "Race for Your Life"	4444
kjohnson3	macOS 13.6.5 Ventura	arm64	4.4.1 (2024-06-14) -- "Race for Your Life"	4393
palomino8	Windows Server 2022 Datacenter	x64	4.4.1 (2024-06-14 ucrt) -- "Race for Your Life"	4373
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for beadarray on palomino6

To the developers/maintainers of the beadarray package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/beadarray.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: beadarray

Version: 2.55.1

Command: chmod a+r beadarray -R && C:\Users\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data beadarray

StartedAt: 2024-07-15 16:38:34 -0400 (Mon, 15 Jul 2024)

EndedAt: 2024-07-15 16:42:17 -0400 (Mon, 15 Jul 2024)

EllapsedTime: 223.3 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   chmod a+r beadarray -R && C:\Users\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data beadarray
###
##############################################################################
##############################################################################


* checking for file 'beadarray/DESCRIPTION' ... OK
* preparing 'beadarray':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'ImageProcessing.Rmd' using rmarkdown
--- finished re-building 'ImageProcessing.Rmd'

--- re-building 'beadarray.Rmd' using rmarkdown

Quitting from lines 34-37 [unnamed-chunk-1] (beadarray.Rmd)
Error: processing vignette 'beadarray.Rmd' failed with diagnostics:
access to '' denied
--- failed re-building 'beadarray.Rmd'

--- re-building 'beadlevel.Rmd' using rmarkdown
--- finished re-building 'beadlevel.Rmd'

--- re-building 'beadsummary.Rmd' using rmarkdown
trying URL 'https://ftp.ncbi.nlm.nih.gov/geo/series/GSE33nnn/GSE33126/matrix/GSE33126_series_matrix.txt.gz'
Content type 'application/x-gzip' length 3658664 bytes (3.5 MB)
==================================================
downloaded 3.5 MB


Quitting from lines 524-532 [unnamed-chunk-37] (beadsummary.Rmd)
Error: processing vignette 'beadsummary.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building 'beadsummary.Rmd'

SUMMARY: processing the following files failed:
  'beadarray.Rmd' 'beadsummary.Rmd'

Error: Vignette re-building failed.
Execution halted