| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-04-29 10:14 -0400 (Wed, 29 Apr 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.4 LTS) | x86_64 | 4.6.0 RC (2026-04-17 r89917) -- "Because it was There" | 4988 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.6.0 Patched (2026-04-24 r89963) -- "Because it was There" | 4694 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 139/2415 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
Diego Alexander Espinoza
| nebbiolo1 | Linux (Ubuntu 24.04.4 LTS) / x86_64 | OK | OK | ERROR | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | ERROR | OK | |||||||||
| See other builds for barcodetrackR in R Universe. | ||||||||||||||
|
To the developers/maintainers of the barcodetrackR package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/barcodetrackR.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: barcodetrackR |
| Version: 1.20.0 |
| Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD check --install=check:barcodetrackR.install-out.txt --library=/home/biocbuild/bbs-3.23-bioc/R/site-library --timings barcodetrackR_1.20.0.tar.gz |
| StartedAt: 2026-04-28 21:53:50 -0400 (Tue, 28 Apr 2026) |
| EndedAt: 2026-04-28 21:53:59 -0400 (Tue, 28 Apr 2026) |
| EllapsedTime: 9.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| CheckDir: barcodetrackR.Rcheck |
| Warnings: NA |
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### Running command:
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### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD check --install=check:barcodetrackR.install-out.txt --library=/home/biocbuild/bbs-3.23-bioc/R/site-library --timings barcodetrackR_1.20.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.23-bioc/meat/barcodetrackR.Rcheck’
* using R version 4.6.0 RC (2026-04-17 r89917)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 13.3.0-6ubuntu2~24.04.1) 13.3.0
GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04.1) 13.3.0
* running under: Ubuntu 24.04.4 LTS
* using session charset: UTF-8
* current time: 2026-04-29 01:53:50 UTC
* checking for file ‘barcodetrackR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘barcodetrackR’ version ‘1.20.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib:
download from 'https://CRAN.R-project.org/src/contrib/PACKAGES' failed
OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘barcodetrackR’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... WARNING
Fatal error: cannot create 'R_TempDir'
ERROR
Fatal error: cannot create 'R_TempDir'
* DONE
Status: 1 ERROR, 1 WARNING
See
‘/home/biocbuild/bbs-3.23-bioc/meat/barcodetrackR.Rcheck/00check.log’
for details.
barcodetrackR.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD INSTALL barcodetrackR ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.23-bioc/R/site-library’ * installing *source* package ‘barcodetrackR’ ... ** this is package ‘barcodetrackR’ version ‘1.20.0’ ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Warning in fun(libname, pkgname) : Package 'barcodetrackR' is deprecated and will be removed from Bioconductor version 3.24 ** testing if installed package can be loaded from final location Warning in fun(libname, pkgname) : Package 'barcodetrackR' is deprecated and will be removed from Bioconductor version 3.24 ** testing if installed package keeps a record of temporary installation path * DONE (barcodetrackR)