Multiple platform build/check report for BioC 3.20 - INSTALL results for atSNP on palomino6

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 22.04.3 LTS)	x86_64	4.4.1 (2024-06-14) -- "Race for Your Life"	4677
palomino6	Windows Server 2022 Datacenter	x64	4.4.1 (2024-06-14 ucrt) -- "Race for Your Life"	4416
lconway	macOS 12.7.1 Monterey	x86_64	4.4.1 (2024-06-14) -- "Race for Your Life"	4444
kjohnson3	macOS 13.6.5 Ventura	arm64	4.4.1 (2024-06-14) -- "Race for Your Life"	4393
palomino8	Windows Server 2022 Datacenter	x64	4.4.1 (2024-06-14 ucrt) -- "Race for Your Life"	4373
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

INSTALL results for atSNP on palomino6

To the developers/maintainers of the atSNP package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/atSNP.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: atSNP

Version: 1.21.0

Command: C:\Users\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL atSNP

StartedAt: 2024-07-15 15:54:59 -0400 (Mon, 15 Jul 2024)

EndedAt: 2024-07-15 15:56:12 -0400 (Mon, 15 Jul 2024)

EllapsedTime: 73.4 seconds

RetCode: 0

Status: OK

Command output

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### Running command:
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###   C:\Users\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL atSNP
###
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* installing to library 'C:/Users/biocbuild/bbs-3.20-bioc/R/library'
* installing *source* package 'atSNP' ...
** using staged installation
** libs
using C++ compiler: 'G__~1.EXE (GCC) 13.2.0'
g++ -std=gnu++17  -I"C:/Users/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.20-bioc/R/library/Rcpp/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c ImportanceSample.cpp -o ImportanceSample.o
g++ -std=gnu++17  -I"C:/Users/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.20-bioc/R/library/Rcpp/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c ImportanceSampleChange.cpp -o ImportanceSampleChange.o
ImportanceSampleChange.cpp: In function 'Rcpp::IntegerVector importance_sample_change(Rcpp::NumericMatrix, Rcpp::NumericVector, Rcpp::NumericMatrix, Rcpp::NumericMatrix, double)':
ImportanceSampleChange.cpp:203:16: warning: '*prob_start[<unknown>]' may be used uninitialized [-Wmaybe-uninitialized]
  203 |         double norm_const = prob_start[motif_len - 1];
      |                ^~~~~~~~~~
g++ -std=gnu++17  -I"C:/Users/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.20-bioc/R/library/Rcpp/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c ImportanceSampleDiff.cpp -o ImportanceSampleDiff.o
ImportanceSampleDiff.cpp: In function 'Rcpp::IntegerVector importance_sample_diff(Rcpp::NumericMatrix, Rcpp::NumericVector, Rcpp::NumericMatrix, Rcpp::NumericMatrix, double)':
ImportanceSampleDiff.cpp:222:16: warning: '*prob_start[<unknown>]' may be used uninitialized [-Wmaybe-uninitialized]
  222 |         double norm_const = prob_start[motif_len - 1];
      |                ^~~~~~~~~~
g++ -std=gnu++17  -I"C:/Users/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.20-bioc/R/library/Rcpp/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c MotifScore.cpp -o MotifScore.o
g++ -std=gnu++17 -shared -s -static-libgcc -o atSNP.dll tmp.def ImportanceSample.o ImportanceSampleChange.o ImportanceSampleDiff.o MotifScore.o -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib -LC:/Users/biocbuild/bbs-3.20-bioc/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.20-bioc/R/library/00LOCK-atSNP/00new/atSNP/libs/x64
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (atSNP)