Claudio Lottaz
| Snapshot Date: 2024-11-08 13:40 -0500 (Fri, 08 Nov 2024) |
| git_url: https://git.bioconductor.org/packages/adSplit |
| git_branch: RELEASE_3_20 |
| git_last_commit: 3bfef6d |
| git_last_commit_date: 2024-10-29 09:25:49 -0500 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2024-11-09 21:30 -0500 (Sat, 09 Nov 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| teran2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4505 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4506 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4538 |
| kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4486 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4493 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 20/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| adSplit 1.76.0 (landing page) Claudio Lottaz
| teran2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | ERROR | OK | |||||||||
| kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | OK | ERROR | OK | |||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the adSplit package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/adSplit.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: adSplit |
| Version: 1.76.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:adSplit.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings adSplit_1.76.0.tar.gz |
| StartedAt: 2024-11-08 19:47:09 -0500 (Fri, 08 Nov 2024) |
| EndedAt: 2024-11-08 19:52:02 -0500 (Fri, 08 Nov 2024) |
| EllapsedTime: 292.8 seconds |
| RetCode: 1 |
| Status: ERROR |
| CheckDir: adSplit.Rcheck |
| Warnings: NA |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:adSplit.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings adSplit_1.76.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.20-bioc/meat/adSplit.Rcheck’
* using R version 4.4.1 (2024-06-14)
* using platform: aarch64-apple-darwin20
* R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 12.2.0
* running under: macOS Ventura 13.6.7
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘adSplit/DESCRIPTION’ ... OK
* this is package ‘adSplit’ version ‘1.76.0’
* checking package namespace information ... OK
* checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib:
cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES'
OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘adSplit’ can be installed ... OK
* used C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.1.0.2.5)’
* used SDK: ‘MacOSX11.3.sdk’
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for GNU extensions in Makefiles ... OK
* checking include directives in Makefiles ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
File ‘/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/adSplit/libs/adSplit.so’:
Found ‘_printf’, possibly from ‘printf’ (C)
Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf. The detected symbols are linked into
the code but might come from libraries and not actually be called.
See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... ERROR
Running examples in ‘adSplit-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: adSplit
> ### Title: Annotation-Driven Splits
> ### Aliases: adSplit
> ### Keywords: datagen
>
> ### ** Examples
>
> # prepare data
> library(golubEsets)
Loading required package: Biobase
Loading required package: BiocGenerics
Attaching package: ‘BiocGenerics’
The following objects are masked from ‘package:stats’:
IQR, mad, sd, var, xtabs
The following objects are masked from ‘package:base’:
Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
pmin.int, rank, rbind, rownames, sapply, saveRDS, setdiff, table,
tapply, union, unique, unsplit, which.max, which.min
Welcome to Bioconductor
Vignettes contain introductory material; view with
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")', and for packages 'citation("pkgname")'.
> data(Golub_Merge)
>
> # generate annotation-driven splits for apoptosis and signal transduction
> x <- adSplit(Golub_Merge, "GO:0006915", "hu6800")
Loading required package: hu6800.db
Loading required package: AnnotationDbi
Loading required package: stats4
Loading required package: IRanges
Loading required package: S4Vectors
Attaching package: ‘S4Vectors’
The following object is masked from ‘package:utils’:
findMatches
The following objects are masked from ‘package:base’:
I, expand.grid, unname
Loading required package: org.Hs.eg.db
Evaluating identifier GO:0006915 with 1942 probesets...
-> skipped, too many probes associated (1942)
> x <- adSplit(Golub_Merge, c("GO:0007165","GO:0006915"), "hu6800", max.probes=7000)
Evaluating identifier GO:0007165 with 6484 probesets...
Evaluating identifier GO:0006915 with 1942 probesets...
>
> # generate a split for alanine, aspartate and glutamate metabolism including
> # an empirical p-value
> x <- adSplit(Golub_Merge, "KEGG:00250", "hu6800", B=100)
Evaluating identifier KEGG:00250 with 25 probesets...
>
> # generate splits for all KEGG pathways.
> x <- adSplit(Golub_Merge, "KEGG", "hu6800")
Evaluating identifier KEGG:04610 with 77 probesets...
Evaluating identifier KEGG:00232 with 12 probesets...
-> skipped, too few probes associated (12)
Evaluating identifier KEGG:00983 with 33 probesets...
Evaluating identifier KEGG:01100 with 652 probesets...
Evaluating identifier KEGG:00380 with 33 probesets...
Evaluating identifier KEGG:00970 with 22 probesets...
Evaluating identifier KEGG:00250 with 25 probesets...
Evaluating identifier KEGG:00280 with 42 probesets...
Evaluating identifier KEGG:00410 with 24 probesets...
Evaluating identifier KEGG:00640 with 23 probesets...
Evaluating identifier KEGG:00650 with 24 probesets...
Evaluating identifier KEGG:02010 with 23 probesets...
Evaluating identifier KEGG:04975 with 23 probesets...
Evaluating identifier KEGG:04142 with 84 probesets...
Evaluating identifier KEGG:04012 with 78 probesets...
Evaluating identifier KEGG:04110 with 111 probesets...
Evaluating identifier KEGG:04360 with 78 probesets...
Evaluating identifier KEGG:04722 with 110 probesets...
Evaluating identifier KEGG:05130 with 41 probesets...
Evaluating identifier KEGG:05131 with 52 probesets...
Evaluating identifier KEGG:05200 with 315 probesets...
Evaluating identifier KEGG:05220 with 83 probesets...
Evaluating identifier KEGG:05416 with 84 probesets...
Evaluating identifier KEGG:00330 with 43 probesets...
Evaluating identifier KEGG:00340 with 18 probesets...
-> skipped, too few probes associated (18)
Evaluating identifier KEGG:00601 with 17 probesets...
-> skipped, too few probes associated (17)
Evaluating identifier KEGG:00071 with 34 probesets...
Evaluating identifier KEGG:01040 with 5 probesets...
-> skipped, too few probes associated (5)
Evaluating identifier KEGG:03320 with 55 probesets...
Evaluating identifier KEGG:04146 with 42 probesets...
Evaluating identifier KEGG:00061 with 1 probesets...
-> skipped, too few probes associated (1)
Evaluating identifier KEGG:00620 with 31 probesets...
Evaluating identifier KEGG:04910 with 112 probesets...
Evaluating identifier KEGG:04920 with 53 probesets...
Evaluating identifier KEGG:00072 with 6 probesets...
-> skipped, too few probes associated (6)
Evaluating identifier KEGG:00310 with 18 probesets...
-> skipped, too few probes associated (18)
Evaluating identifier KEGG:00630 with 8 probesets...
-> skipped, too few probes associated (8)
Evaluating identifier KEGG:00900 with 9 probesets...
-> skipped, too few probes associated (9)
Evaluating identifier KEGG:04742 with 26 probesets...
Evaluating identifier KEGG:00564 with 30 probesets...
Evaluating identifier KEGG:00020 with 25 probesets...
Evaluating identifier KEGG:00592 with 5 probesets...
-> skipped, too few probes associated (5)
Evaluating identifier KEGG:00740 with 7 probesets...
-> skipped, too few probes associated (7)
Evaluating identifier KEGG:04520 with 60 probesets...
Evaluating identifier KEGG:04380 with 118 probesets...
Evaluating identifier KEGG:05323 with 85 probesets...
Evaluating identifier KEGG:04270 with 87 probesets...
Evaluating identifier KEGG:04145 with 121 probesets...
Evaluating identifier KEGG:04510 with 185 probesets...
Evaluating identifier KEGG:04530 with 86 probesets...
Evaluating identifier KEGG:04670 with 90 probesets...
Evaluating identifier KEGG:04810 with 171 probesets...
Evaluating identifier KEGG:04971 with 72 probesets...
Evaluating identifier KEGG:05100 with 59 probesets...
Evaluating identifier KEGG:05110 with 48 probesets...
Evaluating identifier KEGG:05410 with 93 probesets...
Evaluating identifier KEGG:05412 with 77 probesets...
Evaluating identifier KEGG:05414 with 97 probesets...
Evaluating identifier KEGG:04260 with 62 probesets...
Evaluating identifier KEGG:05146 with 117 probesets...
Evaluating identifier KEGG:05322 with 87 probesets...
Evaluating identifier KEGG:04060 with 234 probesets...
Evaluating identifier KEGG:04350 with 74 probesets...
Evaluating identifier KEGG:00230 with 95 probesets...
Evaluating identifier KEGG:05340 with 32 probesets...
Evaluating identifier KEGG:05010 with 131 probesets...
Evaluating identifier KEGG:05120 with 57 probesets...
Evaluating identifier KEGG:04623 with 38 probesets...
Evaluating identifier KEGG:04020 with 171 probesets...
Evaluating identifier KEGG:04062 with 160 probesets...
Evaluating identifier KEGG:04114 with 80 probesets...
Evaluating identifier KEGG:04540 with 85 probesets...
Evaluating identifier KEGG:04720 with 77 probesets...
Evaluating identifier KEGG:04912 with 83 probesets...
Evaluating identifier KEGG:04914 with 65 probesets...
Evaluating identifier KEGG:04916 with 75 probesets...
Evaluating identifier KEGG:04970 with 77 probesets...
Evaluating identifier KEGG:04972 with 79 probesets...
Evaluating identifier KEGG:04976 with 54 probesets...
Evaluating identifier KEGG:05142 with 110 probesets...
Evaluating identifier KEGG:04740 with 28 probesets...
Evaluating identifier KEGG:04962 with 31 probesets...
Evaluating identifier KEGG:04080 with 223 probesets...
Evaluating identifier KEGG:00010 with 64 probesets...
Evaluating identifier KEGG:00350 with 35 probesets...
Evaluating identifier KEGG:00830 with 31 probesets...
Evaluating identifier KEGG:00980 with 42 probesets...
Evaluating identifier KEGG:00982 with 50 probesets...
Evaluating identifier KEGG:03410 with 21 probesets...
Evaluating identifier KEGG:04144 with 131 probesets...
Evaluating identifier KEGG:05016 with 129 probesets...
Evaluating identifier KEGG:00511 with 8 probesets...
-> skipped, too few probes associated (8)
Evaluating identifier KEGG:00500 with 25 probesets...
Evaluating identifier KEGG:04330 with 29 probesets...
Evaluating identifier KEGG:04614 with 16 probesets...
-> skipped, too few probes associated (16)
Evaluating identifier KEGG:00260 with 21 probesets...
Evaluating identifier KEGG:00270 with 22 probesets...
Evaluating identifier KEGG:04010 with 222 probesets...
Evaluating identifier KEGG:04150 with 32 probesets...
Evaluating identifier KEGG:04210 with 80 probesets...
Evaluating identifier KEGG:04370 with 62 probesets...
Evaluating identifier KEGG:04620 with 95 probesets...
Evaluating identifier KEGG:04630 with 129 probesets...
Evaluating identifier KEGG:04660 with 96 probesets...
Evaluating identifier KEGG:04662 with 68 probesets...
Evaluating identifier KEGG:04664 with 65 probesets...
Evaluating identifier KEGG:04666 with 65 probesets...
Evaluating identifier KEGG:04973 with 34 probesets...
Evaluating identifier KEGG:05145 with 130 probesets...
Evaluating identifier KEGG:05160 with 106 probesets...
Evaluating identifier KEGG:05210 with 64 probesets...
Evaluating identifier KEGG:05211 with 61 probesets...
Evaluating identifier KEGG:05212 with 81 probesets...
Evaluating identifier KEGG:05213 with 48 probesets...
Evaluating identifier KEGG:05214 with 72 probesets...
Evaluating identifier KEGG:05215 with 95 probesets...
Evaluating identifier KEGG:05218 with 72 probesets...
Evaluating identifier KEGG:05221 with 58 probesets...
Evaluating identifier KEGG:05222 with 92 probesets...
Evaluating identifier KEGG:05223 with 61 probesets...
Evaluating identifier KEGG:00860 with 25 probesets...
Evaluating identifier KEGG:04514 with 96 probesets...
Evaluating identifier KEGG:00040 with 11 probesets...
-> skipped, too few probes associated (11)
Evaluating identifier KEGG:00053 with 8 probesets...
-> skipped, too few probes associated (8)
Evaluating identifier KEGG:00561 with 28 probesets...
Evaluating identifier KEGG:00360 with 16 probesets...
-> skipped, too few probes associated (16)
Evaluating identifier KEGG:00030 with 21 probesets...
Evaluating identifier KEGG:00051 with 24 probesets...
Evaluating identifier KEGG:00052 with 25 probesets...
Evaluating identifier KEGG:00590 with 31 probesets...
Evaluating identifier KEGG:00591 with 17 probesets...
-> skipped, too few probes associated (17)
Evaluating identifier KEGG:00790 with 10 probesets...
-> skipped, too few probes associated (10)
Evaluating identifier KEGG:04141 with 87 probesets...
Evaluating identifier KEGG:00670 with 9 probesets...
-> skipped, too few probes associated (9)
Evaluating identifier KEGG:00910 with 16 probesets...
-> skipped, too few probes associated (16)
Evaluating identifier KEGG:00480 with 30 probesets...
Evaluating identifier KEGG:04640 with 105 probesets...
Evaluating identifier KEGG:05012 with 66 probesets...
Evaluating identifier KEGG:00750 with 1 probesets...
-> skipped, too few probes associated (1)
Evaluating identifier KEGG:00760 with 11 probesets...
-> skipped, too few probes associated (11)
Evaluating identifier KEGG:04115 with 51 probesets...
Evaluating identifier KEGG:05014 with 49 probesets...
Evaluating identifier KEGG:00240 with 48 probesets...
Evaluating identifier KEGG:04310 with 89 probesets...
Evaluating identifier KEGG:05217 with 24 probesets...
Evaluating identifier KEGG:04120 with 63 probesets...
Evaluating identifier KEGG:04621 with 42 probesets...
Evaluating identifier KEGG:04977 with 12 probesets...
-> skipped, too few probes associated (12)
Evaluating identifier KEGG:05143 with 41 probesets...
Evaluating identifier KEGG:04650 with 112 probesets...
Evaluating identifier KEGG:04940 with 57 probesets...
Evaluating identifier KEGG:05320 with 63 probesets...
Evaluating identifier KEGG:05330 with 50 probesets...
Evaluating identifier KEGG:05332 with 49 probesets...
Evaluating identifier KEGG:04964 with 19 probesets...
-> skipped, too few probes associated (19)
Evaluating identifier KEGG:04730 with 65 probesets...
Evaluating identifier KEGG:05219 with 47 probesets...
Evaluating identifier KEGG:04710 with 12 probesets...
-> skipped, too few probes associated (12)
Evaluating identifier KEGG:04744 with 23 probesets...
Evaluating identifier KEGG:00600 with 14 probesets...
-> skipped, too few probes associated (14)
Evaluating identifier KEGG:00531 with 17 probesets...
-> skipped, too few probes associated (17)
Evaluating identifier KEGG:00140 with 36 probesets...
Evaluating identifier KEGG:04960 with 41 probesets...
Evaluating identifier KEGG:04974 with 68 probesets...
Evaluating identifier KEGG:00190 with 62 probesets...
Evaluating identifier KEGG:04966 with 17 probesets...
-> skipped, too few probes associated (17)
Evaluating identifier KEGG:00300 with 1 probesets...
-> skipped, too few probes associated (1)
Evaluating identifier KEGG:04612 with 71 probesets...
Evaluating identifier KEGG:00120 with 8 probesets...
-> skipped, too few probes associated (8)
Evaluating identifier KEGG:00430 with 6 probesets...
-> skipped, too few probes associated (6)
Evaluating identifier KEGG:05020 with 35 probesets...
Evaluating identifier KEGG:00290 with 8 probesets...
-> skipped, too few probes associated (8)
Evaluating identifier KEGG:00770 with 7 probesets...
-> skipped, too few probes associated (7)
Evaluating identifier KEGG:05216 with 29 probesets...
Evaluating identifier KEGG:04672 with 45 probesets...
Evaluating identifier KEGG:05150 with 52 probesets...
Evaluating identifier KEGG:03440 with 21 probesets...
Evaluating identifier KEGG:04340 with 30 probesets...
Evaluating identifier KEGG:03020 with 12 probesets...
-> skipped, too few probes associated (12)
Evaluating identifier KEGG:04130 with 13 probesets...
-> skipped, too few probes associated (13)
Evaluating identifier KEGG:00780 with 2 probesets...
-> skipped, too few probes associated (2)
Evaluating identifier KEGG:03018 with 29 probesets...
Evaluating identifier KEGG:05140 with 90 probesets...
Evaluating identifier KEGG:04930 with 46 probesets...
Evaluating identifier KEGG:04070 with 57 probesets...
Evaluating identifier KEGG:04622 with 53 probesets...
Evaluating identifier KEGG:00450 with 7 probesets...
-> skipped, too few probes associated (7)
Evaluating identifier KEGG:03420 with 38 probesets...
Evaluating identifier KEGG:04512 with 86 probesets...
Evaluating identifier KEGG:05144 with 61 probesets...
Evaluating identifier KEGG:05310 with 34 probesets...
Evaluating identifier KEGG:03040 with 61 probesets...
Evaluating identifier KEGG:00100 with 13 probesets...
-> skipped, too few probes associated (13)
Evaluating identifier KEGG:00520 with 24 probesets...
Evaluating identifier KEGG:03013 with 67 probesets...
Evaluating identifier KEGG:03008 with 17 probesets...
-> skipped, too few probes associated (17)
Evaluating identifier KEGG:03015 with 39 probesets...
Evaluating identifier KEGG:00510 with 27 probesets...
Evaluating identifier KEGG:00472 with 1 probesets...
-> skipped, too few probes associated (1)
Evaluating identifier KEGG:03030 with 30 probesets...
Evaluating identifier KEGG:03450 with 9 probesets...
-> skipped, too few probes associated (9)
Evaluating identifier KEGG:00062 with 8 probesets...
-> skipped, too few probes associated (8)
Evaluating identifier KEGG:04320 with 13 probesets...
-> skipped, too few probes associated (13)
Evaluating identifier KEGG:00534 with 8 probesets...
-> skipped, too few probes associated (8)
Evaluating identifier KEGG:03010 with 63 probesets...
Evaluating identifier KEGG:04950 with 21 probesets...
Evaluating identifier KEGG:00603 with 10 probesets...
-> skipped, too few probes associated (10)
Evaluating identifier KEGG:00514 with 12 probesets...
-> skipped, too few probes associated (12)
Evaluating identifier KEGG:00533 with 6 probesets...
-> skipped, too few probes associated (6)
Evaluating identifier KEGG:00604 with 8 probesets...
-> skipped, too few probes associated (8)
Evaluating identifier KEGG:00512 with 6 probesets...
-> skipped, too few probes associated (6)
Evaluating identifier KEGG:00524 with 5 probesets...
-> skipped, too few probes associated (5)
Evaluating identifier KEGG:00460 with 3 probesets...
-> skipped, too few probes associated (3)
Evaluating identifier KEGG:00471 with 1 probesets...
-> skipped, too few probes associated (1)
Evaluating identifier KEGG:00400 with 4 probesets...
-> skipped, too few probes associated (4)
Evaluating identifier KEGG:00563 with 8 probesets...
-> skipped, too few probes associated (8)
Evaluating identifier KEGG:03430 with 25 probesets...
Evaluating identifier KEGG:03022 with 21 probesets...
Evaluating identifier KEGG:00130 with 2 probesets...
-> skipped, too few probes associated (2)
Evaluating identifier KEGG:03060 with 11 probesets...
-> skipped, too few probes associated (11)
Evaluating identifier KEGG:04140 with 22 probesets...
Evaluating identifier KEGG:03050 with 37 probesets...
Evaluating identifier KEGG:00562 with 33 probesets...
Evaluating identifier KEGG:04122 with 2 probesets...
-> skipped, too few probes associated (2)
Evaluating identifier KEGG:00565 with 15 probesets...
-> skipped, too few probes associated (15)
Evaluating identifier KEGG:00920 with 3 probesets...
-> skipped, too few probes associated (3)
Evaluating identifier KEGG:00730 with 0 probesets...
-> skipped, too few probes associated (0)
Evaluating identifier KEGG:00532 with 0 probesets...
-> skipped, too few probes associated (0)
Evaluating identifier KEGG:00785 with 0 probesets...
-> skipped, too few probes associated (0)
> image(x)
Error in curl::curl_fetch_memory(url, handle = handle) :
Timeout was reached [rest.kegg.jp]: Resolving timed out after 10001 milliseconds
Calls: image ... request_fetch.write_memory -> <Anonymous> -> raise_libcurl_error
Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 ERROR, 1 NOTE
See
‘/Users/biocbuild/bbs-3.20-bioc/meat/adSplit.Rcheck/00check.log’
for details.
adSplit.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL adSplit ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library’ * installing *source* package ‘adSplit’ ... ** using staged installation ** libs using C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.1.0.2.5)’ using SDK: ‘MacOSX11.3.sdk’ clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c adSplit.cpp -o adSplit.o clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o adSplit.so adSplit.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/00LOCK-adSplit/00new/adSplit/libs ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (adSplit)
adSplit.Rcheck/adSplit-Ex.timings
| name | user | system | elapsed |