Marcel Ramos
| Snapshot Date: 2025-10-02 13:40 -0400 (Thu, 02 Oct 2025) |
| git_url: https://git.bioconductor.org/packages/UniProt.ws |
| git_branch: RELEASE_3_21 |
| git_last_commit: d0e016b |
| git_last_commit_date: 2025-04-15 10:16:32 -0400 (Tue, 15 Apr 2025) |
| Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2025-10-06 11:41 -0400 (Mon, 06 Oct 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4832 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.5.1 RC (2025-06-05 r88288) -- "Great Square Root" | 4613 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" | 4554 |
| kunpeng2 | Linux (openEuler 24.03 LTS) | aarch64 | R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" | 4585 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2273/2341 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| UniProt.ws 2.48.0 (landing page) Marcel Ramos
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| kunpeng2 | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | NA | ||||||||||
|
To the developers/maintainers of the UniProt.ws package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/UniProt.ws.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: UniProt.ws |
| Version: 2.48.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:UniProt.ws.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings UniProt.ws_2.48.0.tar.gz |
| StartedAt: 2025-10-04 15:49:11 -0400 (Sat, 04 Oct 2025) |
| EndedAt: 2025-10-04 15:51:51 -0400 (Sat, 04 Oct 2025) |
| EllapsedTime: 160.5 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: UniProt.ws.Rcheck |
| Warnings: 0 |
##############################################################################
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###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:UniProt.ws.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings UniProt.ws_2.48.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.21-bioc/meat/UniProt.ws.Rcheck’
* using R version 4.5.1 Patched (2025-06-14 r88325)
* using platform: aarch64-apple-darwin20
* R was compiled by
Apple clang version 16.0.0 (clang-1600.0.26.6)
GNU Fortran (GCC) 14.2.0
* running under: macOS Ventura 13.7.5
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘UniProt.ws/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘UniProt.ws’ version ‘2.48.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘UniProt.ws’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
mapUniProt 1.115 0.073 8.448
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘tinytest.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
UniProt.ws.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL UniProt.ws ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library’ * installing *source* package ‘UniProt.ws’ ... ** this is package ‘UniProt.ws’ version ‘2.48.0’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (UniProt.ws)
UniProt.ws.Rcheck/tests/tinytest.Rout
R version 4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin20
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> if (requireNamespace("tinytest", quietly = TRUE))
+ tinytest::test_package("UniProt.ws")
test_mapUniProt.R............. 0 tests
test_mapUniProt.R............. 0 tests
test_mapUniProt.R............. 1 tests [0;32mOK[0m
test_mapUniProt.R............. 2 tests [0;32mOK[0m
test_mapUniProt.R............. 3 tests [0;32mOK[0m
test_mapUniProt.R............. 3 tests [0;32mOK[0m
test_mapUniProt.R............. 3 tests [0;32mOK[0m
test_mapUniProt.R............. 4 tests [0;32mOK[0m
test_mapUniProt.R............. 5 tests [0;32mOK[0m
test_mapUniProt.R............. 6 tests [0;32mOK[0m
test_mapUniProt.R............. 6 tests [0;32mOK[0m
test_mapUniProt.R............. 7 tests [0;32mOK[0m
test_mapUniProt.R............. 8 tests [0;32mOK[0m [0;34m1.3s[0m
test_select.R................. 0 tests
test_select.R................. 0 tests
test_select.R................. 1 tests [0;32mOK[0m
test_select.R................. 1 tests [0;32mOK[0m
test_select.R................. 2 tests [0;32mOK[0m
test_select.R................. 3 tests [0;32mOK[0m
test_select.R................. 3 tests [0;32mOK[0m
test_select.R................. 4 tests [0;32mOK[0m
test_select.R................. 4 tests [0;32mOK[0m
test_select.R................. 4 tests [0;32mOK[0m
test_select.R................. 5 tests [0;32mOK[0m
test_select.R................. 5 tests [0;32mOK[0m
test_select.R................. 6 tests [0;32mOK[0m
test_select.R................. 6 tests [0;32mOK[0m
test_select.R................. 6 tests [0;32mOK[0m
test_select.R................. 6 tests [0;32mOK[0m
test_select.R................. 6 tests [0;32mOK[0m
test_select.R................. 7 tests [0;32mOK[0m
test_select.R................. 8 tests [0;32mOK[0m
test_select.R................. 9 tests [0;32mOK[0m
test_select.R................. 10 tests [0;32mOK[0m
test_select.R................. 10 tests [0;32mOK[0m
test_select.R................. 10 tests [0;32mOK[0m
test_select.R................. 10 tests [0;32mOK[0m
test_select.R................. 10 tests [0;32mOK[0m
test_select.R................. 11 tests [0;32mOK[0m
test_select.R................. 12 tests [0;32mOK[0m
test_select.R................. 13 tests [0;32mOK[0m
test_select.R................. 13 tests [0;32mOK[0m
test_select.R................. 13 tests [0;32mOK[0m
test_select.R................. 13 tests [0;32mOK[0m
test_select.R................. 13 tests [0;32mOK[0m
test_select.R................. 14 tests [0;32mOK[0m
test_select.R................. 15 tests [0;32mOK[0m
test_select.R................. 16 tests [0;32mOK[0m
test_select.R................. 17 tests [0;32mOK[0m
test_select.R................. 17 tests [0;32mOK[0m
test_select.R................. 17 tests [0;32mOK[0m
test_select.R................. 17 tests [0;32mOK[0m
test_select.R................. 17 tests [0;32mOK[0m
test_select.R................. 18 tests [0;32mOK[0m
test_select.R................. 19 tests [0;32mOK[0m
test_select.R................. 20 tests [0;32mOK[0m
test_select.R................. 20 tests [0;32mOK[0m
test_select.R................. 20 tests [0;32mOK[0m
test_select.R................. 20 tests [0;32mOK[0m
test_select.R................. 20 tests [0;32mOK[0m
test_select.R................. 21 tests [0;32mOK[0m
test_select.R................. 22 tests [0;32mOK[0m
test_select.R................. 23 tests [0;32mOK[0m
test_select.R................. 23 tests [0;32mOK[0m
test_select.R................. 23 tests [0;32mOK[0m
test_select.R................. 23 tests [0;32mOK[0m
test_select.R................. 23 tests [0;32mOK[0m
test_select.R................. 24 tests [0;32mOK[0m
test_select.R................. 25 tests [0;32mOK[0m
test_select.R................. 26 tests [0;32mOK[0m
test_select.R................. 26 tests [0;32mOK[0m
test_select.R................. 27 tests [0;32mOK[0m
test_select.R................. 27 tests [0;32mOK[0m
test_select.R................. 27 tests [0;32mOK[0m
test_select.R................. 27 tests [0;32mOK[0m
test_select.R................. 27 tests [0;32mOK[0m
test_select.R................. 28 tests [0;32mOK[0m
test_select.R................. 28 tests [0;32mOK[0m
test_select.R................. 28 tests [0;32mOK[0m
test_select.R................. 29 tests [0;32mOK[0m
test_select.R................. 29 tests [0;32mOK[0m
test_select.R................. 30 tests [0;32mOK[0m
test_select.R................. 30 tests [0;32mOK[0m
test_select.R................. 31 tests [0;32mOK[0m [0;34m17.1s[0m
test_serviceAccessors.R....... 0 tests
test_serviceAccessors.R....... 0 tests
test_serviceAccessors.R....... 1 tests [0;32mOK[0m
test_serviceAccessors.R....... 2 tests [0;32mOK[0m
test_serviceAccessors.R....... 3 tests [0;32mOK[0m
test_serviceAccessors.R....... 3 tests [0;32mOK[0m
test_serviceAccessors.R....... 4 tests [0;32mOK[0m
test_serviceAccessors.R....... 5 tests [0;32mOK[0m
test_serviceAccessors.R....... 6 tests [0;32mOK[0m
test_serviceAccessors.R....... 6 tests [0;32mOK[0m
test_serviceAccessors.R....... 7 tests [0;32mOK[0m
test_serviceAccessors.R....... 8 tests [0;32mOK[0m
test_serviceAccessors.R....... 9 tests [0;32mOK[0m
test_serviceAccessors.R....... 9 tests [0;32mOK[0m
test_serviceAccessors.R....... 10 tests [0;32mOK[0m
test_serviceAccessors.R....... 11 tests [0;32mOK[0m
test_serviceAccessors.R....... 12 tests [0;32mOK[0m
test_serviceAccessors.R....... 13 tests [0;32mOK[0m
test_serviceAccessors.R....... 13 tests [0;32mOK[0m
test_serviceAccessors.R....... 14 tests [0;32mOK[0m
test_serviceAccessors.R....... 15 tests [0;32mOK[0m
test_serviceAccessors.R....... 16 tests [0;32mOK[0m [0;34m14.0s[0m
test_utilities.R.............. 0 tests
test_utilities.R.............. 1 tests [0;32mOK[0m
test_utilities.R.............. 1 tests [0;32mOK[0m
test_utilities.R.............. 1 tests [0;32mOK[0m
test_utilities.R.............. 2 tests [0;32mOK[0m
test_utilities.R.............. 2 tests [0;32mOK[0m
test_utilities.R.............. 3 tests [0;32mOK[0m
test_utilities.R.............. 3 tests [0;32mOK[0m
test_utilities.R.............. 3 tests [0;32mOK[0m
test_utilities.R.............. 4 tests [0;32mOK[0m
test_utilities.R.............. 4 tests [0;32mOK[0m
test_utilities.R.............. 5 tests [0;32mOK[0m
test_utilities.R.............. 5 tests [0;32mOK[0m
test_utilities.R.............. 5 tests [0;32mOK[0m
test_utilities.R.............. 6 tests [0;32mOK[0m [0;36m13ms[0m
All ok, 61 results (32.5s)
Warning messages:
1: IDs not mapped: 3
2: IDs not mapped: 3
3: IDs not mapped: P20806, Q17192
4: IDs not mapped: 3
>
> proc.time()
user system elapsed
8.078 0.566 38.023
UniProt.ws.Rcheck/UniProt.ws-Ex.timings
| name | user | system | elapsed | |
| UniProt.ws-class | 1.130 | 0.058 | 2.021 | |
| UniProt.ws-methods | 0.218 | 0.013 | 4.798 | |
| mapUniProt | 1.115 | 0.073 | 8.448 | |
| utilities | 0.005 | 0.000 | 0.005 | |