| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2024-11-20 12:07 -0500 (Wed, 20 Nov 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| teran2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4481 |
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4479 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" | 4359 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4539 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4493 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2222/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| UMI4Cats 1.16.0 (landing page) Mireia Ramos-Rodriguez
| teran2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK |  | ||||||||
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | ||||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | ERROR | ERROR | skipped | skipped | |||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | ERROR | skipped | skipped | |||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the UMI4Cats package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/UMI4Cats.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: UMI4Cats |
| Version: 1.16.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data UMI4Cats |
| StartedAt: 2024-11-19 19:02:38 -0500 (Tue, 19 Nov 2024) |
| EndedAt: 2024-11-19 19:04:00 -0500 (Tue, 19 Nov 2024) |
| EllapsedTime: 81.8 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data UMI4Cats
###
##############################################################################
##############################################################################
* checking for file ‘UMI4Cats/DESCRIPTION’ ... OK
* preparing ‘UMI4Cats’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘UMI4Cats.Rmd’ using rmarkdown
186 reads; of these:
186 (100.00%) were unpaired; of these:
23 (12.37%) aligned 0 times
154 (82.80%) aligned exactly 1 time
9 (4.84%) aligned >1 times
87.63% overall alignment rate
98 reads; of these:
98 (100.00%) were unpaired; of these:
17 (17.35%) aligned 0 times
78 (79.59%) aligned exactly 1 time
3 (3.06%) aligned >1 times
82.65% overall alignment rate
2024-11-19 19:03:57.485 R[77839:456302309] XType: com.apple.fonts is not accessible.
2024-11-19 19:03:57.485 R[77839:456302309] XType: XTFontStaticRegistry is enabled.
Quitting from lines 357-388 [make-umi4c] (UMI4Cats.Rmd)
Error: processing vignette 'UMI4Cats.Rmd' failed with diagnostics:
vector memory limit of 96.0 Gb reached, see mem.maxVSize()
--- failed re-building ‘UMI4Cats.Rmd’
SUMMARY: processing the following file failed:
‘UMI4Cats.Rmd’
Error: Vignette re-building failed.
Execution halted