Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2024-11-20 12:08 -0500 (Wed, 20 Nov 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
teran2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4481 |
nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4479 |
palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" | 4359 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4539 |
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4493 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 2195/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
TRESS 1.12.0 (landing page) Zhenxing Guo
| teran2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | |||||||||
nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | ||||||||||
palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | OK | ||||||||||
To the developers/maintainers of the TRESS package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/TRESS.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
Package: TRESS |
Version: 1.12.0 |
Command: /home/biocbuild/R/R/bin/R CMD check --install=check:TRESS.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings TRESS_1.12.0.tar.gz |
StartedAt: 2024-11-20 13:28:02 -0000 (Wed, 20 Nov 2024) |
EndedAt: 2024-11-20 13:34:12 -0000 (Wed, 20 Nov 2024) |
EllapsedTime: 370.7 seconds |
RetCode: 0 |
Status: OK |
CheckDir: TRESS.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD check --install=check:TRESS.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings TRESS_1.12.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.20-bioc/meat/TRESS.Rcheck’ * using R version 4.4.1 (2024-06-14) * using platform: aarch64-unknown-linux-gnu * R was compiled by gcc (GCC) 12.2.1 20220819 (openEuler 12.2.1-14) GNU Fortran (GCC) 10.3.1 * running under: openEuler 22.03 (LTS-SP1) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘TRESS/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘TRESS’ version ‘1.12.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... NOTE Vignette dependency required without any vignettes:: ‘knitr’ * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘TRESS’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... NOTE checkRd: (-1) CallCandidates.Rd:61: Escaped LaTeX specials: \& checkRd: (-1) CallCandidates.Rd:63: Escaped LaTeX specials: \& checkRd: (-1) CallPeaks.multiRep.Rd:7: Escaped LaTeX specials: \& checkRd: (-1) CallPeaks.paramEsti.Rd:10: Escaped LaTeX specials: \& checkRd: (-1) CallPeaks.paramEsti.Rd:23: Escaped LaTeX specials: \& checkRd: (-1) findBumps.Rd:8: Escaped LaTeX specials: \& * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed CallDMRs.paramEsti 32.577 2.851 22.561 TRESS_DMRtest 31.327 1.622 20.559 DMRInfer 26.136 2.670 1.773 CoefName 18.615 3.338 25.282 CallPeaks.multiRep 9.413 1.978 2.923 findBumps 6.426 0.295 0.100 * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See ‘/home/biocbuild/bbs-3.20-bioc/meat/TRESS.Rcheck/00check.log’ for details.
TRESS.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD INSTALL TRESS ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-4.4.1/site-library’ * installing *source* package ‘TRESS’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (TRESS)
TRESS.Rcheck/TRESS-Ex.timings
name | user | system | elapsed | |
CallCandidates | 2.220 | 0.060 | 2.284 | |
CallDMRs.paramEsti | 32.577 | 2.851 | 22.561 | |
CallPeaks.multiRep | 9.413 | 1.978 | 2.923 | |
CallPeaks.oneRep | 0.103 | 0.012 | 0.116 | |
CallPeaks.paramEsti | 2.704 | 0.024 | 2.734 | |
CoefName | 18.615 | 3.338 | 25.282 | |
DMRInfer | 26.136 | 2.670 | 1.773 | |
DivideBins | 0.000 | 0.000 | 0.001 | |
ShowOnePeak | 0.340 | 0.016 | 0.359 | |
TRESS_DMRfit | 0 | 0 | 0 | |
TRESS_DMRtest | 31.327 | 1.622 | 20.559 | |
TRESS_peak | 0 | 0 | 0 | |
filterRegions | 0.005 | 0.003 | 0.009 | |
findBumps | 6.426 | 0.295 | 0.100 | |
meRatio | 0.022 | 0.000 | 0.022 | |