Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2024-12-23 12:04 -0500 (Mon, 23 Dec 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4744 |
palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" | 4487 |
merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4515 |
kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4467 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 2134/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
TFARM 1.28.0 (landing page) Liuba Nausicaa Martino
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | |||||||||
palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | |||||||||
To the developers/maintainers of the TFARM package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/TFARM.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: TFARM |
Version: 1.28.0 |
Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:TFARM.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings TFARM_1.28.0.tar.gz |
StartedAt: 2024-12-20 06:07:05 -0500 (Fri, 20 Dec 2024) |
EndedAt: 2024-12-20 06:10:16 -0500 (Fri, 20 Dec 2024) |
EllapsedTime: 191.2 seconds |
RetCode: 0 |
Status: OK |
CheckDir: TFARM.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:TFARM.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings TFARM_1.28.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.20-bioc/meat/TFARM.Rcheck’ * using R version 4.4.2 (2024-10-31) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 * running under: Ubuntu 24.04.1 LTS * using session charset: UTF-8 * checking for file ‘TFARM/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘TFARM’ version ‘1.28.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘TFARM’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... NOTE checkRd: (-1) rulesGen.Rd:26: Lost braces; missing escapes or markup? 26 | type {TF1=1, TF2=1, TF3=1}). If \code{type = FALSE}, also rules with absent | ^ checkRd: (-1) rulesGen.Rd:29: Lost braces; missing escapes or markup? 29 | {TF1=1, TF2=0, TF3=1} or {TF1=0, TF2=0, TF3=0}).} | ^ checkRd: (-1) rulesGen.Rd:29: Lost braces; missing escapes or markup? 29 | {TF1=1, TF2=0, TF3=1} or {TF1=0, TF2=0, TF3=0}).} | ^ * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/home/biocbuild/bbs-3.20-bioc/meat/TFARM.Rcheck/00check.log’ for details.
TFARM.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD INSTALL TFARM ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.20-bioc/R/site-library’ * installing *source* package ‘TFARM’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (TFARM)
TFARM.Rcheck/TFARM-Ex.timings
name | user | system | elapsed | |
DELTA | 0.004 | 0.001 | 0.005 | |
IComp | 0.375 | 0.022 | 0.398 | |
IMP | 0.001 | 0.000 | 0.001 | |
IMP_Z | 0.001 | 0.000 | 0.001 | |
IPCA | 0.010 | 0.000 | 0.011 | |
I_c_2 | 0.001 | 0.000 | 0.001 | |
MCF7_chr1 | 0.042 | 0.001 | 0.044 | |
TF_Imp | 0.001 | 0.000 | 0.002 | |
distribViz | 0.010 | 0.000 | 0.011 | |
heatI | 0.036 | 0.004 | 0.040 | |
imp_FOSL2 | 0.000 | 0.000 | 0.001 | |
items | 0.001 | 0.000 | 0.000 | |
itemset | 0.001 | 0.000 | 0.001 | |
p_TFs | 0.001 | 0.000 | 0.001 | |
presAbs | 0.061 | 0.005 | 0.067 | |
r_FOSL2 | 0.001 | 0.000 | 0.001 | |
r_TEAD4 | 0.000 | 0.001 | 0.002 | |
r_noFOSL2 | 0.000 | 0.000 | 0.001 | |
rulesGen | 0.396 | 0.008 | 0.405 | |
rulesTF | 0.094 | 0.001 | 0.095 | |
rulesTF0 | 3.666 | 0.056 | 3.723 | |