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This page was generated on 2025-08-18 11:46 -0400 (Mon, 18 Aug 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.3 LTS)x86_644.5.1 (2025-06-13) -- "Great Square Root" 4824
palomino7Windows Server 2022 Datacenterx644.5.1 (2025-06-13 ucrt) -- "Great Square Root" 4566
merida1macOS 12.7.5 Montereyx86_644.5.1 RC (2025-06-05 r88288) -- "Great Square Root" 4604
kjohnson1macOS 13.6.6 Venturaarm644.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" 4545
kunpeng2Linux (openEuler 24.03 LTS)aarch64R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" 4579
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 2174/2341HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
TENxIO 1.10.2  (landing page)
Marcel Ramos
Snapshot Date: 2025-08-14 13:40 -0400 (Thu, 14 Aug 2025)
git_url: https://git.bioconductor.org/packages/TENxIO
git_branch: RELEASE_3_21
git_last_commit: 68a1c7a
git_last_commit_date: 2025-05-08 14:23:16 -0400 (Thu, 08 May 2025)
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino7Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 12.7.5 Monterey / x86_64  OK    ERROR  skippedskipped
kjohnson1macOS 13.6.6 Ventura / arm64  OK    ERROR  skippedskipped
kunpeng2Linux (openEuler 24.03 LTS) / aarch64  OK    OK    NA  

BUILD results for TENxIO on kjohnson1

To the developers/maintainers of the TENxIO package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/TENxIO.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: TENxIO
Version: 1.10.2
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data TENxIO
StartedAt: 2025-08-15 10:21:14 -0400 (Fri, 15 Aug 2025)
EndedAt: 2025-08-15 10:22:04 -0400 (Fri, 15 Aug 2025)
EllapsedTime: 49.9 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data TENxIO
###
##############################################################################
##############################################################################


* checking for file ‘TENxIO/DESCRIPTION’ ... OK
* preparing ‘TENxIO’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘TENxIO.Rmd’ using rmarkdown

Quitting from TENxIO.Rmd:254-262 [unnamed-chunk-14]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `.find_start_end_cols()`:
! cannnot determine start/end columns
---
Backtrace:
    ▆
 1. ├─BiocIO::import(tenxp)
 2. └─TENxIO::import(tenxp)
 3.   └─GenomicRanges::makeGRangesFromDataFrame(panno, keep.extra.columns = TRUE)
 4.     └─GenomicRanges:::.find_GRanges_cols(...)
 5.       └─GenomicRanges:::.find_start_end_cols(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'TENxIO.Rmd' failed with diagnostics:
cannnot determine start/end columns
--- failed re-building ‘TENxIO.Rmd’

SUMMARY: processing the following file failed:
  ‘TENxIO.Rmd’

Error: Vignette re-building failed.
Execution halted