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This page was generated on 2024-12-23 12:05 -0500 (Mon, 23 Dec 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.1 LTS)x86_644.4.2 (2024-10-31) -- "Pile of Leaves" 4744
palomino8Windows Server 2022 Datacenterx644.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" 4487
merida1macOS 12.7.5 Montereyx86_644.4.2 (2024-10-31) -- "Pile of Leaves" 4515
kjohnson1macOS 13.6.6 Venturaarm644.4.2 (2024-10-31) -- "Pile of Leaves" 4467
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 2121/2289HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
TBSignatureProfiler 1.18.0  (landing page)
Aubrey R. Odom
Snapshot Date: 2024-12-19 13:00 -0500 (Thu, 19 Dec 2024)
git_url: https://git.bioconductor.org/packages/TBSignatureProfiler
git_branch: RELEASE_3_20
git_last_commit: 746b7fd
git_last_commit_date: 2024-10-29 10:46:23 -0500 (Tue, 29 Oct 2024)
nebbiolo2Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    ERROR  skipped
palomino8Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
merida1macOS 12.7.5 Monterey / x86_64  OK    ERROR  skippedskipped
kjohnson1macOS 13.6.6 Ventura / arm64  OK    ERROR  skippedskipped

BUILD results for TBSignatureProfiler on palomino8

To the developers/maintainers of the TBSignatureProfiler package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/TBSignatureProfiler.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: TBSignatureProfiler
Version: 1.18.0
Command: chmod a+r TBSignatureProfiler -R && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data TBSignatureProfiler
StartedAt: 2024-12-19 22:19:44 -0500 (Thu, 19 Dec 2024)
EndedAt: 2024-12-19 22:20:22 -0500 (Thu, 19 Dec 2024)
EllapsedTime: 37.6 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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###
### Running command:
###
###   chmod a+r TBSignatureProfiler -R && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data TBSignatureProfiler
###
##############################################################################
##############################################################################


* checking for file 'TBSignatureProfiler/DESCRIPTION' ... OK
* preparing 'TBSignatureProfiler':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'tbspVignette.Rmd' using rmarkdown

Quitting from lines 111-121 [run_profiler] (tbspVignette.Rmd)
Error: processing vignette 'tbspVignette.Rmd' failed with diagnostics:
✖ The input assay object has duplicated rownames
--- failed re-building 'tbspVignette.Rmd'

SUMMARY: processing the following file failed:
  'tbspVignette.Rmd'

Error: Vignette re-building failed.
Execution halted