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This page was generated on 2025-09-25 11:39 -0400 (Thu, 25 Sep 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.3 LTS)x86_644.5.1 (2025-06-13) -- "Great Square Root" 4827
merida1macOS 12.7.5 Montereyx86_644.5.1 RC (2025-06-05 r88288) -- "Great Square Root" 4608
kjohnson1macOS 13.6.6 Venturaarm644.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" 4549
kunpeng2Linux (openEuler 24.03 LTS)aarch64R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" 4581
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Package 2149/2341HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SynExtend 1.20.2  (landing page)
Nicholas Cooley
Snapshot Date: 2025-09-22 13:40 -0400 (Mon, 22 Sep 2025)
git_url: https://git.bioconductor.org/packages/SynExtend
git_branch: RELEASE_3_21
git_last_commit: 6d3d7fc
git_last_commit_date: 2025-05-19 12:53:58 -0400 (Mon, 19 May 2025)
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 12.7.5 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson1macOS 13.6.6 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
kunpeng2Linux (openEuler 24.03 LTS) / aarch64  OK    OK    NA  


CHECK results for SynExtend on nebbiolo1

To the developers/maintainers of the SynExtend package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SynExtend.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: SynExtend
Version: 1.20.2
Command: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD check --install=check:SynExtend.install-out.txt --library=/home/biocbuild/bbs-3.21-bioc/R/site-library --timings SynExtend_1.20.2.tar.gz
StartedAt: 2025-09-25 04:38:07 -0400 (Thu, 25 Sep 2025)
EndedAt: 2025-09-25 04:46:44 -0400 (Thu, 25 Sep 2025)
EllapsedTime: 516.8 seconds
RetCode: 0
Status:   OK  
CheckDir: SynExtend.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD check --install=check:SynExtend.install-out.txt --library=/home/biocbuild/bbs-3.21-bioc/R/site-library --timings SynExtend_1.20.2.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.21-bioc/meat/SynExtend.Rcheck’
* using R version 4.5.1 (2025-06-13)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
    GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.3 LTS
* using session charset: UTF-8
* checking for file ‘SynExtend/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘SynExtend’ version ‘1.20.2’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘SynExtend’ can be installed ... OK
* used C compiler: ‘gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
* used Fortran compiler: ‘GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
Unexported objects imported by ':::' calls:
  ‘DECIPHER:::.detectCores’ ‘DECIPHER:::.getSubMatrix’
  ‘DECIPHER:::.nucleotideSubstitutionMatrix’
  See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  AAHitScoping.Rd: SearchIndex
  ApproximateBackground.Rd: translate, FindSynteny
  BlockByRank.Rd: FindSynteny
  BlockExpansion.Rd: FindSynteny
  BlockReconciliation.Rd: FindSynteny, Synteny-class
  CheckAgainstReport.Rd: readDNAStringSet
  ClusterByK.Rd: FindSynteny
  CompetePairs.Rd: FindSynteny
  DisjointSet.Rd: FindSynteny, Synteny-class
  EstimRearrScen.Rd: Synteny-class, FindSynteny
  ExpandDiagonal.Rd: AlignPairs, FindSynteny
  ExtractBy.Rd: FindSynteny, Synteny-class
  HitConsensus.Rd: FindSynteny
  NucleotideOverlap.Rd: FindSynteny, Synteny-class
  PairSummaries.Rd: FindSynteny, Synteny-class
  PrepareSeqs.Rd: FindSynteny
  SelectByK.Rd: FindSynteny
  SequenceSimilarity.Rd: AlignSeqs, AlignProfiles, AlignTranslation,
    DistanceMatrix
  SummarizePairs.Rd: AlignPairs, getGeneticCode, IndexSeqs,
    SearchIndex, FindSynteny
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking usage of KIND in Fortran files ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                          user system elapsed
BuiltInEnsembles        87.457  0.268  87.785
ExampleStreptomycesData 61.200  0.197  61.934
SummarizePairs          59.131  0.051  59.188
BlockExpansion          55.357  0.818  56.188
ExpandDiagonal          34.085  0.105  34.191
SelectByK               30.583  0.257  30.848
predict.EvoWeaver        7.778  0.002   7.779
gffToDataFrame           7.084  0.005   7.089
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘test_ExoLabel.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 3 NOTEs
See
  ‘/home/biocbuild/bbs-3.21-bioc/meat/SynExtend.Rcheck/00check.log’
for details.


Installation output

SynExtend.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD INSTALL SynExtend
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.21-bioc/R/site-library’
* installing *source* package ‘SynExtend’ ...
** this is package ‘SynExtend’ version ‘1.20.2’
** using staged installation
** libs
using C compiler: ‘gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
using Fortran compiler: ‘GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
gcc -std=gnu2x -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG   -I/usr/local/include   -fopenmp -fpic  -g -O2  -Wall -Werror=format-security -c CDend.c -o CDend.o
gcc -std=gnu2x -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG   -I/usr/local/include   -fopenmp -fpic  -g -O2  -Wall -Werror=format-security -c CShuffle.c -o CShuffle.o
gcc -std=gnu2x -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG   -I/usr/local/include   -fopenmp -fpic  -g -O2  -Wall -Werror=format-security -c HungarianAlgo.c -o HungarianAlgo.o
gcc -std=gnu2x -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG   -I/usr/local/include   -fopenmp -fpic  -g -O2  -Wall -Werror=format-security -c LoserTree.c -o LoserTree.o
gcc -std=gnu2x -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG   -I/usr/local/include   -fopenmp -fpic  -g -O2  -Wall -Werror=format-security -c MoranI.c -o MoranI.o
gcc -std=gnu2x -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG   -I/usr/local/include   -fopenmp -fpic  -g -O2  -Wall -Werror=format-security -c NucleotideCounts.c -o NucleotideCounts.o
gcc -std=gnu2x -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG   -I/usr/local/include   -fopenmp -fpic  -g -O2  -Wall -Werror=format-security -c OnDiskLP.c -o OnDiskLP.o
OnDiskLP.c: In function ‘R_LPOOM_cluster’:
OnDiskLP.c:2185:5: warning: ‘debug_weights’ may be used uninitialized [-Wmaybe-uninitialized]
 2185 |     SET_VECTOR_ELT(LIST_VAL, 1, debug_weights);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
OnDiskLP.c:2076:8: note: ‘debug_weights’ was declared here
 2076 |   SEXP debug_weights, debug_degrees;
      |        ^~~~~~~~~~~~~
OnDiskLP.c:2186:5: warning: ‘debug_degrees’ may be used uninitialized [-Wmaybe-uninitialized]
 2186 |     SET_VECTOR_ELT(LIST_VAL, 2, debug_degrees);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
OnDiskLP.c:2076:23: note: ‘debug_degrees’ was declared here
 2076 |   SEXP debug_weights, debug_degrees;
      |                       ^~~~~~~~~~~~~
OnDiskLP.c:2187:5: warning: ‘debug_disjoint_sizes’ may be used uninitialized [-Wmaybe-uninitialized]
 2187 |     SET_VECTOR_ELT(LIST_VAL, 3, debug_disjoint_sizes);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
OnDiskLP.c:2125:8: note: ‘debug_disjoint_sizes’ was declared here
 2125 |   SEXP debug_disjoint_sizes;
      |        ^~~~~~~~~~~~~~~~~~~~
gcc -std=gnu2x -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG   -I/usr/local/include   -fopenmp -fpic  -g -O2  -Wall -Werror=format-security -c PrefixTrie.c -o PrefixTrie.o
gcc -std=gnu2x -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG   -I/usr/local/include   -fopenmp -fpic  -g -O2  -Wall -Werror=format-security -c R_init_synextend.c -o R_init_synextend.o
gcc -std=gnu2x -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG   -I/usr/local/include   -fopenmp -fpic  -g -O2  -Wall -Werror=format-security -c RandomForest.c -o RandomForest.o
gcc -std=gnu2x -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG   -I/usr/local/include   -fopenmp -fpic  -g -O2  -Wall -Werror=format-security -c SEutils.c -o SEutils.o
gcc -std=gnu2x -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG   -I/usr/local/include   -fopenmp -fpic  -g -O2  -Wall -Werror=format-security -c XORRand.c -o XORRand.o
gfortran  -fpic  -g -O2  -Wall -Werror=format-security -c  _fortran_tabulate.f95 -o _fortran_tabulate.o
f951: Warning: ‘-Werror=’ argument ‘-Werror=format-security’ is not valid for Fortran
gfortran  -fpic  -g -O2  -Wall -Werror=format-security -c  _fortran_utils.f95 -o _fortran_utils.o
f951: Warning: ‘-Werror=’ argument ‘-Werror=format-security’ is not valid for Fortran
gcc -std=gnu2x -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG   -I/usr/local/include   -fopenmp -fpic  -g -O2  -Wall -Werror=format-security -c calcMIR2C.c -o calcMIR2C.o
gfortran  -fpic  -g -O2  -Wall -Werror=format-security -c  cart_fort.f95 -o cart_fort.o
f951: Warning: ‘-Werror=’ argument ‘-Werror=format-security’ is not valid for Fortran
gcc -std=gnu2x -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG   -I/usr/local/include   -fopenmp -fpic  -g -O2  -Wall -Werror=format-security -c dendrapply.c -o dendrapply.o
gcc -std=gnu2x -shared -L/home/biocbuild/bbs-3.21-bioc/R/lib -L/usr/local/lib -o SynExtend.so CDend.o CShuffle.o HungarianAlgo.o LoserTree.o MoranI.o NucleotideCounts.o OnDiskLP.o PrefixTrie.o R_init_synextend.o RandomForest.o SEutils.o XORRand.o _fortran_tabulate.o _fortran_utils.o calcMIR2C.o cart_fort.o dendrapply.o -fopenmp -lgfortran -lm -lquadmath -L/home/biocbuild/bbs-3.21-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.21-bioc/R/site-library/00LOCK-SynExtend/00new/SynExtend/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (SynExtend)

Tests output

SynExtend.Rcheck/tests/test_ExoLabel.Rout


R version 4.5.1 (2025-06-13) -- "Great Square Root"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> generate_random_graph <- function(nverts, nedges){
+   require(igraph, quietly=TRUE)
+   alph <- AA_STANDARD
+   num_required <- ceiling(log(nverts, length(alph)))
+   num_required <- max(num_required, 3)
+   sample_names <- mkAllStrings(alph, num_required)
+   labs <- sample(sample_names, nverts)
+   g <- sample_gnm(nverts, nedges)
+   df <- as_data_frame(g, what="edges")
+   data.frame(v1=labs[df[,1]], v2=labs[df[,2]], w=runif(nedges))
+ }
> 
> run_status_tests <- function(){
+   if(!require(igraph)){
+     cat("Skipping tests, igraph is not available.\n")
+     invisible(TRUE)
+   }
+   require(SynExtend)
+   tf1 <- tempfile()
+   tf2 <- tempfile()
+   WEIGHT_TOLERANCE <- 0.001
+   testExo <- SynExtend:::.testExoLabel
+   cat("Small graphs:...")
+   for(loop in c(0, 0.25, 0.5)){
+     df <- generate_random_graph(10, 25)
+     if(any(abs(df$w - loop) < WEIGHT_TOLERANCE))
+       df$w[abs(df$w - loop) < WEIGHT_TOLERANCE] <- df$w[abs(df$w - loop) < WEIGHT_TOLERANCE] + 3*WEIGHT_TOLERANCE
+     write.table(df, tf1, row.names=FALSE, col.names=FALSE, quote=FALSE, sep='\t')
+     testExo(tf1, add_self_loops=loop)
+   }
+   cat("passed.\n")
+ 
+   cat("Larger graphs:...")
+   for(loop in c(0, 0.5)){
+     df <- generate_random_graph(10000, 25000)
+     if(any(abs(df$w - loop) < WEIGHT_TOLERANCE))
+       df$w[abs(df$w - loop) < WEIGHT_TOLERANCE] <- df$w[abs(df$w - loop) < WEIGHT_TOLERANCE] + 3*WEIGHT_TOLERANCE
+     write.table(df, tf1, row.names=FALSE, col.names=FALSE, quote=FALSE, sep='\t')
+     testExo(tf1, add_self_loops=loop)
+   }
+   cat("passed.\n")
+ 
+ 
+   cat("Directed Edges...")
+   testExo(tf1, mode="directed")
+   cat("passed.\n")
+ 
+   cat("No fast sort...")
+   testExo(tf1, use_fast_sort=FALSE)
+   cat("passed.\n")
+ 
+   ## I'll just use the same graph here
+   cat("Different separator...")
+   write.table(df, tf1, row.names=FALSE, col.names=FALSE, quote=FALSE, sep=',')
+   testExo(tf1, sep=',')
+   cat("passed.\n")
+ 
+   cat("Multi-file input...")
+   tf2 <- tempfile()
+   df <- generate_random_graph(50000, 100000)
+   write.table(df[1:50000,], tf1, row.names=FALSE, col.names=FALSE, quote=FALSE, sep='\t')
+   write.table(df[50000:100000,], tf2, row.names=FALSE, col.names=FALSE, quote=FALSE, sep='\t')
+   testExo(c(tf1, tf2))
+   cat("passed.\n")
+ 
+   cat("Larger weights...")
+   df[,3] <- df[,3] * 1000
+   write.table(df, tf1, row.names=FALSE, col.names=FALSE, quote=FALSE, sep='\t')
+   testExo(tf1)
+   cat("passed.\n")
+ 
+   file.remove(tf1)
+   file.remove(tf2)
+ 
+   cat("\nAll checks passed!\n")
+   invisible(TRUE)
+ }
> 
> run_status_tests()
Loading required package: igraph

Attaching package: 'igraph'

The following objects are masked from 'package:stats':

    decompose, spectrum

The following object is masked from 'package:base':

    union

Loading required package: SynExtend
Loading required package: DECIPHER
Loading required package: Biostrings
Loading required package: BiocGenerics
Loading required package: generics

Attaching package: 'generics'

The following objects are masked from 'package:igraph':

    components, union

The following objects are masked from 'package:base':

    as.difftime, as.factor, as.ordered, intersect, is.element, setdiff,
    setequal, union


Attaching package: 'BiocGenerics'

The following objects are masked from 'package:igraph':

    normalize, path

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, is.unsorted, lapply,
    mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int,
    rank, rbind, rownames, sapply, saveRDS, table, tapply, unique,
    unsplit, which.max, which.min

Loading required package: S4Vectors
Loading required package: stats4

Attaching package: 'S4Vectors'

The following object is masked from 'package:utils':

    findMatches

The following objects are masked from 'package:base':

    I, expand.grid, unname

Loading required package: IRanges
Loading required package: XVector
Loading required package: GenomeInfoDb

Attaching package: 'Biostrings'

The following object is masked from 'package:base':

    strsplit


Attaching package: 'SynExtend'

The following object is masked from 'package:stats':

    dendrapply

Small graphs:...passed.
Larger graphs:...passed.
Directed Edges...passed.
No fast sort...passed.
Different separator...passed.
Multi-file input...passed.
Larger weights...passed.

All checks passed!
> 
> proc.time()
   user  system elapsed 
  7.835   0.937   8.765 

Example timings

SynExtend.Rcheck/SynExtend-Ex.timings

nameusersystemelapsed
AAHitScoping000
ApproximateBackground0.0770.0050.084
BlastSeqs0.0000.0000.001
BlockByRank0.5220.0000.522
BlockExpansion55.357 0.81856.188
BlockReconciliation000
BuiltInEnsembles87.457 0.26887.785
CIDist_NullDist0.0010.0020.002
CheckAgainstReport000
ClusterByK1.5880.0001.589
CompetePairs0.5470.0010.549
DPhyloStatistic0.0280.0030.032
DecisionTree-class0.0350.0010.036
DisjointSet0.0680.0020.070
Endosymbionts_GeneCalls0.0160.0010.016
Endosymbionts_LinkedFeatures0.0200.0020.022
Endosymbionts_Pairs010.0320.0010.034
Endosymbionts_Pairs020.0320.0100.042
Endosymbionts_Pairs030.0240.0040.028
Endosymbionts_Sets0.0040.0010.003
Endosymbionts_Synteny0.0070.0000.007
EstimRearrScen1.4320.0291.464
EstimateExoLabel0.0030.0000.003
EvoWeaver0.0010.0020.003
EvoWeb0.0730.0030.077
ExampleStreptomycesData61.200 0.19761.934
ExoLabel0.0130.0030.016
ExpandDiagonal34.085 0.10534.191
ExtractBy0.3320.0050.336
FastQFromSRR0.0000.0010.000
FindSets0.0010.0000.001
FitchParsimony0.0560.0010.057
Generic0.0010.0010.002
HitConsensus000
MakeBlastDb000
MoransI0.0010.0000.001
NormVec0.0000.0010.000
NucleotideOverlap0.5130.0020.515
OneSite0.0010.0000.000
PairSummaries3.2370.0083.247
PhyloDistance-CI0.0040.0000.005
PhyloDistance-JRF0.0030.0000.004
PhyloDistance-KF0.0020.0000.002
PhyloDistance-RF0.0010.0000.003
PhyloDistance0.0030.0000.004
PrepareSeqs1.4130.0081.421
RandForest0.0130.0000.013
RejectionBy000
SelectByK30.583 0.25730.848
SequenceSimilarity0.0620.0030.066
SubSetPairs0.2990.0010.300
SummarizePairs59.131 0.05159.188
SuperTree0.1910.0040.196
SuperTreeEx0.0090.0000.010
WithinSetCompetition2.6550.0032.658
dendrapply0.1060.0080.114
gffToDataFrame7.0840.0057.089
plot.EvoWeb0.9660.0030.969
predict.EvoWeaver7.7780.0027.779
simMat0.0290.0020.030
subset-dendrogram0.3190.0030.322