Multiple platform build/check report for BioC 3.20 - BUILD results for SummarizedBenchmark on teran2

Hostname	OS	Arch (*)	R version	Installed pkgs
teran2	Linux (Ubuntu 24.04.1 LTS)	x86_64	4.4.2 (2024-10-31) -- "Pile of Leaves"	4481
nebbiolo2	Linux (Ubuntu 24.04.1 LTS)	x86_64	4.4.2 (2024-10-31) -- "Pile of Leaves"	4479
palomino8	Windows Server 2022 Datacenter	x64	4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves"	4359
lconway	macOS 12.7.1 Monterey	x86_64	4.4.1 (2024-06-14) -- "Race for Your Life"	4539
kunpeng2	Linux (openEuler 22.03 LTS-SP1)	aarch64	4.4.1 (2024-06-14) -- "Race for Your Life"	4493
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for SummarizedBenchmark on teran2

To the developers/maintainers of the SummarizedBenchmark package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SummarizedBenchmark.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: SummarizedBenchmark

Version: 2.24.0

Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data SummarizedBenchmark

StartedAt: 2024-11-19 22:06:55 -0500 (Tue, 19 Nov 2024)

EndedAt: 2024-11-19 22:09:38 -0500 (Tue, 19 Nov 2024)

EllapsedTime: 163.7 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data SummarizedBenchmark
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* checking for file ‘SummarizedBenchmark/DESCRIPTION’ ... OK
* preparing ‘SummarizedBenchmark’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘CaseStudy-RNAseqQuantification.Rmd’ using rmarkdown
--- finished re-building ‘CaseStudy-RNAseqQuantification.Rmd’

--- re-building ‘CaseStudy-SingleCellSimulation.Rmd’ using rmarkdown

Quitting from lines 97-102 [run-sim-buildbench] (CaseStudy-SingleCellSimulation.Rmd)
Error: processing vignette 'CaseStudy-SingleCellSimulation.Rmd' failed with diagnostics:

No method returned valid values for any assays!

--- failed re-building ‘CaseStudy-SingleCellSimulation.Rmd’

--- re-building ‘Feature-ErrorHandling.Rmd’ using rmarkdown
--- finished re-building ‘Feature-ErrorHandling.Rmd’

--- re-building ‘Feature-Iterative.Rmd’ using rmarkdown
--- finished re-building ‘Feature-Iterative.Rmd’

--- re-building ‘Feature-Parallel.Rmd’ using rmarkdown
--- finished re-building ‘Feature-Parallel.Rmd’

--- re-building ‘SummarizedBenchmark-ClassDetails.Rmd’ using rmarkdown
--- finished re-building ‘SummarizedBenchmark-ClassDetails.Rmd’

--- re-building ‘SummarizedBenchmark-FullCaseStudy.Rmd’ using rmarkdown
--- finished re-building ‘SummarizedBenchmark-FullCaseStudy.Rmd’

--- re-building ‘SummarizedBenchmark-Introduction.Rmd’ using rmarkdown
--- finished re-building ‘SummarizedBenchmark-Introduction.Rmd’

SUMMARY: processing the following file failed:
  ‘CaseStudy-SingleCellSimulation.Rmd’

Error: Vignette re-building failed.
Execution halted