Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2024-12-23 12:07 -0500 (Mon, 23 Dec 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4744 |
palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" | 4487 |
merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4515 |
kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4467 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 2084/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
Patrick Kimes
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
palomino8 | Windows Server 2022 Datacenter / x64 | OK | ERROR | skipped | skipped | |||||||||
merida1 | macOS 12.7.5 Monterey / x86_64 | OK | ERROR | skipped | skipped | |||||||||
kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
To the developers/maintainers of the SummarizedBenchmark package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SummarizedBenchmark.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: SummarizedBenchmark |
Version: 2.24.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data SummarizedBenchmark |
StartedAt: 2024-12-19 22:30:11 -0500 (Thu, 19 Dec 2024) |
EndedAt: 2024-12-19 22:37:23 -0500 (Thu, 19 Dec 2024) |
EllapsedTime: 432.0 seconds |
RetCode: 1 |
Status: ERROR |
PackageFile: None |
PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data SummarizedBenchmark ### ############################################################################## ############################################################################## * checking for file ‘SummarizedBenchmark/DESCRIPTION’ ... OK * preparing ‘SummarizedBenchmark’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘CaseStudy-RNAseqQuantification.Rmd’ using rmarkdown --- finished re-building ‘CaseStudy-RNAseqQuantification.Rmd’ --- re-building ‘CaseStudy-SingleCellSimulation.Rmd’ using rmarkdown Quitting from lines 97-102 [run-sim-buildbench] (CaseStudy-SingleCellSimulation.Rmd) Error: processing vignette 'CaseStudy-SingleCellSimulation.Rmd' failed with diagnostics: No method returned valid values for any assays! --- failed re-building ‘CaseStudy-SingleCellSimulation.Rmd’ --- re-building ‘Feature-ErrorHandling.Rmd’ using rmarkdown --- finished re-building ‘Feature-ErrorHandling.Rmd’ --- re-building ‘Feature-Iterative.Rmd’ using rmarkdown --- finished re-building ‘Feature-Iterative.Rmd’ --- re-building ‘Feature-Parallel.Rmd’ using rmarkdown --- finished re-building ‘Feature-Parallel.Rmd’ --- re-building ‘SummarizedBenchmark-ClassDetails.Rmd’ using rmarkdown --- finished re-building ‘SummarizedBenchmark-ClassDetails.Rmd’ --- re-building ‘SummarizedBenchmark-FullCaseStudy.Rmd’ using rmarkdown --- finished re-building ‘SummarizedBenchmark-FullCaseStudy.Rmd’ --- re-building ‘SummarizedBenchmark-Introduction.Rmd’ using rmarkdown --- finished re-building ‘SummarizedBenchmark-Introduction.Rmd’ SUMMARY: processing the following file failed: ‘CaseStudy-SingleCellSimulation.Rmd’ Error: Vignette re-building failed. Execution halted