Johannes Rainer
| Snapshot Date: 2025-11-20 15:01 -0500 (Thu, 20 Nov 2025) |
| git_url: https://git.bioconductor.org/packages/SpectriPy |
| git_branch: RELEASE_3_22 |
| git_last_commit: 017658a |
| git_last_commit_date: 2025-10-29 11:36:52 -0500 (Wed, 29 Oct 2025) |
| Back to Multiple platform build/check report for BioC 3.22: simplified long |
|
This page was generated on 2025-11-24 12:04 -0500 (Mon, 24 Nov 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" | 4873 |
| merida1 | macOS 12.7.6 Monterey | x86_64 | 4.5.2 Patched (2025-11-05 r88990) -- "[Not] Part in a Rumble" | 4654 |
| kjohnson1 | macOS 13.7.5 Ventura | arm64 | 4.5.2 Patched (2025-11-04 r88984) -- "[Not] Part in a Rumble" | 4600 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4668 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2094/2361 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SpectriPy 1.0.0 (landing page) Johannes Rainer
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.6 Monterey / x86_64 | ERROR | ERROR | skipped | skipped | |||||||||
| kjohnson1 | macOS 13.7.5 Ventura / arm64 | ERROR | ERROR | skipped | skipped | |||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | NA | ||||||||||
|
To the developers/maintainers of the SpectriPy package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SpectriPy.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: SpectriPy |
| Version: 1.0.0 |
| Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --install=check:SpectriPy.install-out.txt --library=/home/biocbuild/bbs-3.22-bioc/R/site-library --timings SpectriPy_1.0.0.tar.gz |
| StartedAt: 2025-11-21 05:00:45 -0500 (Fri, 21 Nov 2025) |
| EndedAt: 2025-11-21 05:13:48 -0500 (Fri, 21 Nov 2025) |
| EllapsedTime: 782.7 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: SpectriPy.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --install=check:SpectriPy.install-out.txt --library=/home/biocbuild/bbs-3.22-bioc/R/site-library --timings SpectriPy_1.0.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.22-bioc/meat/SpectriPy.Rcheck’
* using R version 4.5.2 (2025-10-31)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.3 LTS
* using session charset: UTF-8
* checking for file ‘SpectriPy/DESCRIPTION’ ... OK
* this is package ‘SpectriPy’ version ‘1.0.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘SpectriPy’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking dependencies in R code ... NOTE
Unexported object imported by a ':::' call: ‘Spectra:::.check_peaks_data_value’
See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
MsBackendPy 5.117 0.817 5.803
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/home/biocbuild/bbs-3.22-bioc/meat/SpectriPy.Rcheck/00check.log’
for details.
SpectriPy.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD INSTALL SpectriPy ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.22-bioc/R/site-library’ * installing *source* package ‘SpectriPy’ ... ** this is package ‘SpectriPy’ version ‘1.0.0’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SpectriPy)
SpectriPy.Rcheck/tests/testthat.Rout
R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(Spectra)
Loading required package: S4Vectors
Loading required package: stats4
Loading required package: BiocGenerics
Loading required package: generics
Attaching package: 'generics'
The following objects are masked from 'package:base':
as.difftime, as.factor, as.ordered, intersect, is.element, setdiff,
setequal, union
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, is.unsorted, lapply,
mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int,
rank, rbind, rownames, sapply, saveRDS, table, tapply, unique,
unsplit, which.max, which.min
Attaching package: 'S4Vectors'
The following object is masked from 'package:utils':
findMatches
The following objects are masked from 'package:base':
I, expand.grid, unname
Loading required package: BiocParallel
> library(SpectriPy)
Loading required package: reticulate
> library(MsBackendMgf)
>
> fl <- system.file("extdata", "mgf", "test.mgf", package = "SpectriPy")
> s <- Spectra(fl, source = MsBackendMgf())
Start data import from 1 files ... done
> s <- setBackend(s, MsBackendPy(), pythonVariableName = "py_be")
>
> be <- s@backend
>
> test_check("SpectriPy")
2025-11-21 05:05:11,901:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:11,903:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:11,903:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:11,904:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:11,905:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:11,905:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:11,906:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:11,907:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:11,907:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:11,908:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:11,909:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:11,909:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:11,910:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:11,911:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:11,911:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:11,912:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:11,913:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:11,913:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:11,914:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:11,915:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:11,915:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:11,916:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:11,917:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:11,917:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:11,918:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:11,919:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:11,919:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:11,920:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:11,921:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:11,921:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:11,922:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:11,923:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:11,923:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:11,924:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:11,925:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:11,925:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:11,926:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:11,927:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:11,927:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:11,928:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:11,929:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:11,929:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:11,930:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:11,931:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:11,931:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:11,932:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:11,933:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:11,934:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:11,934:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:11,935:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:11,936:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:11,936:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:11,937:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:11,938:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:11,938:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:11,939:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:11,940:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:11,940:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:11,941:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:11,942:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:11,942:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:11,943:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:11,944:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:11,945:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:11,945:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:11,946:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:11,947:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:11,947:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:11,948:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:11,949:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:11,949:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:11,950:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:11,951:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:11,951:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:11,952:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:11,953:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:11,954:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:11,954:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:11,955:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:11,956:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:11,956:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:11,957:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:11,958:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:11,958:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:11,959:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:11,960:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:11,961:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:11,961:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:11,962:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:11,963:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:11,963:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:11,964:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:11,965:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:11,965:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:11,966:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:11,967:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:11,967:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:11,968:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:11,969:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:11,969:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
Calculating similarities: 0%| | 0/4 [00:00<?, ?it/s]
Calculating similarities: 25%|██▌ | 1/4 [00:02<00:07, 2.43s/it]
Calculating similarities: 100%|██████████| 4/4 [00:02<00:00, 1.65it/s]
Calculating similarities: 0%| | 0/4 [00:00<?, ?it/s]
Calculating similarities: 100%|██████████| 4/4 [00:00<00:00, 5513.38it/s]
Calculating similarities: 0%| | 0/4 [00:00<?, ?it/s]
Calculating similarities: 100%|██████████| 4/4 [00:00<00:00, 4205.87it/s]
Calculating similarities: 0%| | 0/4 [00:00<?, ?it/s]
Calculating similarities: 100%|██████████| 4/4 [00:00<00:00, 5262.61it/s]
Calculating similarities: 0%| | 0/2 [00:00<?, ?it/s]
Calculating similarities: 100%|██████████| 2/2 [00:00<00:00, 7025.63it/s]
Calculating similarities: 0%| | 0/2 [00:00<?, ?it/s]
Calculating similarities: 100%|██████████| 2/2 [00:00<00:00, 4943.20it/s]
Calculating similarities: 0%| | 0/2 [00:00<?, ?it/s]
Calculating similarities: 100%|██████████| 2/2 [00:00<00:00, 6600.01it/s]
Calculating similarities: 0%| | 0/2 [00:00<?, ?it/s]
Calculating similarities: 100%|██████████| 2/2 [00:00<00:00, 2583.49it/s]
Calculating similarities: 0%| | 0/2 [00:00<?, ?it/s]
Calculating similarities: 100%|██████████| 2/2 [00:00<00:00, 4002.20it/s]
Calculating similarities: 0%| | 0/2 [00:00<?, ?it/s]
Calculating similarities: 100%|██████████| 2/2 [00:00<00:00, 3988.88it/s]
Calculating similarities: 0%| | 0/4 [00:00<?, ?it/s]
Calculating similarities: 50%|█████ | 2/4 [00:00<00:00, 2316.02it/s]
Calculating similarities: 0%| | 0/2 [00:00<?, ?it/s]
Calculating similarities: 50%|█████ | 1/2 [00:00<00:00, 1.68it/s]
Calculating similarities: 100%|██████████| 2/2 [00:00<00:00, 3.35it/s]
Calculating similarities: 0%| | 0/2 [00:00<?, ?it/s]
Calculating similarities: 50%|█████ | 1/2 [00:00<00:00, 1.21it/s]
Calculating similarities: 100%|██████████| 2/2 [00:00<00:00, 2.41it/s]
2025-11-21 05:05:23,215:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:23,294:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:23,295:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:23,296:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:23,362:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:23,363:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:23,363:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:23,609:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:23,610:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:23,611:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:23,644:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:23,645:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:23,645:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:23,916:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:23,916:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:23,917:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:23,930:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:23,931:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2025-11-21 05:05:23,931:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
Processing spectra: 0%| | 0/4 [00:00<?, ?it/s]
Processing spectra: 100%|██████████| 4/4 [00:00<00:00, 3454.23it/s]
Processing spectra: 0%| | 0/4 [00:00<?, ?it/s]
Processing spectra: 100%|██████████| 4/4 [00:00<00:00, 3855.94it/s]
Processing spectra: 0%| | 0/4 [00:00<?, ?it/s]
Processing spectra: 100%|██████████| 4/4 [00:00<00:00, 3714.24it/s]
Processing spectra: 0%| | 0/4 [00:00<?, ?it/s]
Processing spectra: 100%|██████████| 4/4 [00:00<00:00, 4229.19it/s]
Processing spectra: 0%| | 0/4 [00:00<?, ?it/s]
Processing spectra: 100%|██████████| 4/4 [00:00<00:00, 3978.47it/s]
[ FAIL 0 | WARN 4 | SKIP 1 | PASS 592 ]
══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• empty test (1): 'test_zzz.R:16:1'
[ FAIL 0 | WARN 4 | SKIP 1 | PASS 592 ]
>
> ## TODO: add tests from the Spectra unit test suite!
>
> ## ## Run the MsBackend spectra variable test suite
> ## test_suite <- system.file("test_backends", "test_MsBackend",
> ## package = "Spectra")
>
> ## ## Run single test file.
> ## res <- test_dir(test_suite, stop_on_failure = TRUE)
>
> proc.time()
user system elapsed
28.346 2.864 30.602
SpectriPy.Rcheck/SpectriPy-Ex.timings
| name | user | system | elapsed | |
| MsBackendPy | 5.117 | 0.817 | 5.803 | |
| compareSpectriPy | 2.316 | 0.242 | 2.580 | |
| conversion | 0.350 | 0.305 | 0.497 | |
| filterSpectriPy | 0.172 | 0.038 | 0.211 | |