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This page was generated on 2024-11-20 12:02 -0500 (Wed, 20 Nov 2024).

HostnameOSArch (*)R versionInstalled pkgs
teran2Linux (Ubuntu 24.04.1 LTS)x86_644.4.2 (2024-10-31) -- "Pile of Leaves" 4481
nebbiolo2Linux (Ubuntu 24.04.1 LTS)x86_644.4.2 (2024-10-31) -- "Pile of Leaves" 4479
palomino8Windows Server 2022 Datacenterx644.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" 4359
lconwaymacOS 12.7.1 Montereyx86_644.4.1 (2024-06-14) -- "Race for Your Life" 4539
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch644.4.1 (2024-06-14) -- "Race for Your Life" 4493
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1979/2289HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SingleR 2.8.0  (landing page)
Aaron Lun
Snapshot Date: 2024-11-19 13:40 -0500 (Tue, 19 Nov 2024)
git_url: https://git.bioconductor.org/packages/SingleR
git_branch: RELEASE_3_20
git_last_commit: 0035541
git_last_commit_date: 2024-10-29 10:39:43 -0500 (Tue, 29 Oct 2024)
teran2Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
nebbiolo2Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    OK  
palomino8Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    OK    OK  


INSTALL results for SingleR on teran2

To the developers/maintainers of the SingleR package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SingleR.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: SingleR
Version: 2.8.0
Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD INSTALL SingleR
StartedAt: 2024-11-19 16:56:17 -0500 (Tue, 19 Nov 2024)
EndedAt: 2024-11-19 16:57:14 -0500 (Tue, 19 Nov 2024)
EllapsedTime: 56.8 seconds
RetCode: 0
Status:   OK  

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD INSTALL SingleR
###
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* installing to library ‘/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library’
* installing *source* package ‘SingleR’ ...
** using staged installation
** libs
using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’
using C++17
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG  -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include' -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/beachmat/include' -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/assorthead/include' -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BiocNeighbors/include' -I/usr/local/include    -fpic  -g -O2  -Wall  -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG  -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include' -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/beachmat/include' -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/assorthead/include' -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BiocNeighbors/include' -I/usr/local/include    -fpic  -g -O2  -Wall  -c classify_integrated.cpp -o classify_integrated.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG  -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include' -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/beachmat/include' -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/assorthead/include' -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BiocNeighbors/include' -I/usr/local/include    -fpic  -g -O2  -Wall  -c classify_single.cpp -o classify_single.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG  -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include' -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/beachmat/include' -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/assorthead/include' -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BiocNeighbors/include' -I/usr/local/include    -fpic  -g -O2  -Wall  -c find_classic_markers.cpp -o find_classic_markers.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG  -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include' -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/beachmat/include' -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/assorthead/include' -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BiocNeighbors/include' -I/usr/local/include    -fpic  -g -O2  -Wall  -c grouped_medians.cpp -o grouped_medians.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG  -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include' -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/beachmat/include' -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/assorthead/include' -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BiocNeighbors/include' -I/usr/local/include    -fpic  -g -O2  -Wall  -c train_integrated.cpp -o train_integrated.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG  -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include' -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/beachmat/include' -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/assorthead/include' -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/BiocNeighbors/include' -I/usr/local/include    -fpic  -g -O2  -Wall  -c train_single.cpp -o train_single.o
train_single.cpp: In function ‘SEXPREC* train_single(Rcpp::IntegerVector, Rcpp::RObject, Rcpp::IntegerVector, Rcpp::IntegerVector, Rcpp::List, Rcpp::RObject, int)’:
train_single.cpp:19:9: warning: unused variable ‘NR’ [-Wunused-variable]
   19 |     int NR = parsed->ptr->nrow();
      |         ^~
g++ -std=gnu++17 -shared -L/home/biocbuild/bbs-3.20-bioc/R/lib -L/usr/local/lib -o SingleR.so RcppExports.o classify_integrated.o classify_single.o find_classic_markers.o grouped_medians.o train_integrated.o train_single.o -L/home/biocbuild/bbs-3.20-bioc/R/lib -lR
installing to /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/00LOCK-SingleR/00new/SingleR/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (SingleR)