Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2024-11-20 12:02 -0500 (Wed, 20 Nov 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
teran2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4481 |
nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4479 |
palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" | 4359 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4539 |
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4493 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1942/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
SGCP 1.6.0 (landing page) Niloofar AghaieAbiane
| teran2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | |||||||||
nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | ||||||||||
palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | OK | ||||||||||
To the developers/maintainers of the SGCP package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SGCP.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: SGCP |
Version: 1.6.0 |
Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:SGCP.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings SGCP_1.6.0.tar.gz |
StartedAt: 2024-11-20 09:39:02 -0500 (Wed, 20 Nov 2024) |
EndedAt: 2024-11-20 09:44:51 -0500 (Wed, 20 Nov 2024) |
EllapsedTime: 349.2 seconds |
RetCode: 0 |
Status: OK |
CheckDir: SGCP.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:SGCP.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings SGCP_1.6.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/meat/SGCP.Rcheck’ * using R version 4.4.2 (2024-10-31) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 * running under: Ubuntu 24.04.1 LTS * using session charset: UTF-8 * checking for file ‘SGCP/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘SGCP’ version ‘1.6.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘SGCP’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... NOTE checkRd: (-1) SGCP_clustering.Rd:39: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) SGCP_clustering.Rd:40: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) SGCP_clustering.Rd:41: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) SGCP_clustering.Rd:42: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) SGCP_clustering.Rd:43: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) SGCP_clustering.Rd:44: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) SGCP_clustering.Rd:45: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) SGCP_clustering.Rd:46: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) SGCP_clustering.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) SGCP_clustering.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) SGCP_clustering.Rd:49: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) SGCP_clustering.Rd:57: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) SGCP_clustering.Rd:58: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) SGCP_clustering.Rd:59: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) SGCP_ezSGCP.Rd:68: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) SGCP_ezSGCP.Rd:69: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) SGCP_ezSGCP.Rd:70: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) SGCP_ezSGCP.Rd:72: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) SGCP_ezSGCP.Rd:73: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) SGCP_ezSGCP.Rd:74: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) SGCP_ezSGCP.Rd:75: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) SGCP_ezSGCP.Rd:76: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) SGCP_ezSGCP.Rd:77: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) SGCP_ezSGCP.Rd:78: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) SGCP_ezSGCP.Rd:79: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) SGCP_ezSGCP.Rd:80: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) SGCP_ezSGCP.Rd:81: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) SGCP_ezSGCP.Rd:82: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) SGCP_ezSGCP.Rd:83: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) SGCP_ezSGCP.Rd:84: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) SGCP_ezSGCP.Rd:85: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) SGCP_ezSGCP.Rd:87: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) SGCP_ezSGCP.Rd:89: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) SGCP_ezSGCP.Rd:90: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) SGCP_ezSGCP.Rd:92: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) SGCP_ezSGCP.Rd:94: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) SGCP_ezSGCP.Rd:95: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) SGCP_ezSGCP.Rd:97: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) SGCP_ezSGCP.Rd:99: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) SGCP_ezSGCP.Rd:100: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) SGCP_ezSGCP.Rd:101: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) SGCP_ezSGCP.Rd:103: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) SGCP_ezSGCP.Rd:105: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) SGCP_ezSGCP.Rd:106: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) SGCP_semiSupervised.Rd:24: Lost braces 24 | \\item{semiSupervised}{An object of the caret train class representing the semi-supervised classification model.} | ^ checkRd: (-1) SGCP_semiSupervised.Rd:24: Lost braces 24 | \\item{semiSupervised}{An object of the caret train class representing the semi-supervised classification model.} | ^ checkRd: (-1) resFinalGO.Rd:11: Lost braces 11 | \details{code{resFinalGO} is a list containing the following information: | ^ * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/meat/SGCP.Rcheck/00check.log’ for details.
SGCP.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD INSTALL SGCP ### ############################################################################## ############################################################################## * installing to library ‘/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library’ * installing *source* package ‘SGCP’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SGCP)
SGCP.Rcheck/SGCP-Ex.timings
name | user | system | elapsed | |
SGCP_adjacencyMatrix | 0.825 | 0.021 | 0.872 | |
SGCP_clustering | 0.415 | 0.005 | 0.632 | |
SGCP_ezPLOT | 0.081 | 0.005 | 0.090 | |
SGCP_ezSGCP | 0.091 | 0.005 | 0.098 | |
SGCP_go | 0.046 | 0.006 | 0.053 | |
SGCP_plot_bar | 0.220 | 0.010 | 0.235 | |
SGCP_plot_conductance | 0.269 | 0.025 | 0.303 | |
SGCP_plot_density | 0.149 | 0.040 | 0.189 | |
SGCP_plot_heatMap | 0.305 | 0.090 | 0.398 | |
SGCP_plot_jitter | 0.116 | 0.028 | 0.144 | |
SGCP_plot_pca | 0.100 | 0.009 | 0.109 | |
SGCP_plot_pie | 0.254 | 0.000 | 0.259 | |
SGCP_plot_silhouette | 0.336 | 0.002 | 0.343 | |
SGCP_semiLabeling | 0.030 | 0.002 | 0.031 | |
SGCP_semiSupervised | 1.899 | 0.013 | 2.128 | |
cheng | 0.092 | 0.008 | 0.132 | |
resClus | 0.344 | 0.032 | 0.388 | |
resFinalGO | 0.007 | 0.000 | 0.007 | |
resInitialGO | 0.004 | 0.003 | 0.006 | |
resSemiLabel | 0.002 | 0.000 | 0.003 | |
resSemiSupervised | 0.097 | 0.001 | 0.099 | |
sgcp | 0.033 | 0.004 | 0.041 | |