Mauro Castro
| Snapshot Date: 2024-12-19 13:00 -0500 (Thu, 19 Dec 2024) |
| git_url: https://git.bioconductor.org/packages/RedeR |
| git_branch: RELEASE_3_20 |
| git_last_commit: 641e8f5 |
| git_last_commit_date: 2024-10-29 09:37:40 -0500 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2024-12-23 12:08 -0500 (Mon, 23 Dec 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4744 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" | 4487 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4515 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4467 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1709/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| RedeR 3.2.0 (landing page) Mauro Castro
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
|
To the developers/maintainers of the RedeR package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/RedeR.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: RedeR |
| Version: 3.2.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:RedeR.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings RedeR_3.2.0.tar.gz |
| StartedAt: 2024-12-21 06:17:15 -0500 (Sat, 21 Dec 2024) |
| EndedAt: 2024-12-21 06:17:56 -0500 (Sat, 21 Dec 2024) |
| EllapsedTime: 40.7 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: RedeR.Rcheck |
| Warnings: 0 |
##############################################################################
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###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:RedeR.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings RedeR_3.2.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.20-bioc/meat/RedeR.Rcheck’
* using R version 4.4.2 (2024-10-31)
* using platform: aarch64-apple-darwin20
* R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 12.2.0
* running under: macOS Ventura 13.7.1
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘RedeR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘RedeR’ version ‘3.2.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘RedeR’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking whether startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) nestNodes-methods.Rd:47: Lost braces in \itemize; meant \describe ?
checkRd: (-1) nestNodes-methods.Rd:48: Lost braces in \itemize; meant \describe ?
checkRd: (-1) nestNodes-methods.Rd:49: Lost braces in \itemize; meant \describe ?
checkRd: (-1) nestNodes-methods.Rd:50: Lost braces in \itemize; meant \describe ?
checkRd: (-1) nestNodes-methods.Rd:51: Lost braces in \itemize; meant \describe ?
checkRd: (-1) nestNodes-methods.Rd:52: Lost braces in \itemize; meant \describe ?
checkRd: (-1) nestNodes-methods.Rd:53-54: Lost braces in \itemize; meant \describe ?
checkRd: (-1) nestNodes-methods.Rd:55: Lost braces in \itemize; meant \describe ?
checkRd: (-1) nestNodes-methods.Rd:56: Lost braces in \itemize; meant \describe ?
checkRd: (-1) nestNodes-methods.Rd:57: Lost braces in \itemize; meant \describe ?
checkRd: (-1) startRedeR.Rd:24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) startRedeR.Rd:25: Lost braces in \itemize; meant \describe ?
checkRd: (-1) startRedeR.Rd:26: Lost braces in \itemize; meant \describe ?
checkRd: (-1) startRedeR.Rd:27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) startRedeR.Rd:28: Lost braces in \itemize; meant \describe ?
checkRd: (-1) startRedeR.Rd:29: Lost braces in \itemize; meant \describe ?
checkRd: (-1) startRedeR.Rd:30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) startRedeR.Rd:31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) startRedeR.Rd:32: Lost braces in \itemize; meant \describe ?
checkRd: (-1) startRedeR.Rd:33: Lost braces in \itemize; meant \describe ?
checkRd: (-1) startRedeR.Rd:34: Lost braces in \itemize; meant \describe ?
checkRd: (-1) startRedeR.Rd:35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) startRedeR.Rd:36: Lost braces in \itemize; meant \describe ?
checkRd: (-1) startRedeR.Rd:37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) startRedeR.Rd:38: Lost braces in \itemize; meant \describe ?
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/Users/biocbuild/bbs-3.20-bioc/meat/RedeR.Rcheck/00check.log’
for details.
RedeR.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL RedeR ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library’ * installing *source* package ‘RedeR’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RedeR)
RedeR.Rcheck/RedeR-Ex.timings
| name | user | system | elapsed | |
| Deprecated | 0.000 | 0.001 | 0.001 | |
| RedPort | 0.003 | 0.000 | 0.004 | |
| RedeR-data1 | 0.070 | 0.007 | 0.077 | |
| RedeR-data2 | 0.029 | 0.002 | 0.031 | |
| addEdges-methods | 0.014 | 0.002 | 0.015 | |
| addGraph-methods | 0.10 | 0.01 | 0.11 | |
| addGraphToRedeR | 0.014 | 0.002 | 0.015 | |
| addLegendToRedeR | 0.000 | 0.001 | 0.000 | |
| addNodes-methods | 0.010 | 0.001 | 0.011 | |
| calld-methods | 0.002 | 0.000 | 0.002 | |
| deleteEdges-methods | 0.012 | 0.002 | 0.013 | |
| deleteNodes-methods | 0.010 | 0.001 | 0.012 | |
| exitRedeR | 0 | 0 | 0 | |
| exitd-methods | 0.001 | 0.000 | 0.002 | |
| getGraph-methods | 0.015 | 0.001 | 0.017 | |
| getGraphFromRedeR | 0.015 | 0.001 | 0.016 | |
| mergeOutEdges-methods | 0.025 | 0.002 | 0.027 | |
| nestNodes-methods | 0.038 | 0.001 | 0.039 | |
| ping-methods | 0.001 | 0.000 | 0.001 | |
| pingRedeR | 0 | 0 | 0 | |
| relax-methods | 0.014 | 0.001 | 0.015 | |
| relaxRedeR | 0.013 | 0.001 | 0.014 | |
| resetRedeR | 0.000 | 0.000 | 0.001 | |
| resetd-methods | 0.001 | 0.000 | 0.002 | |
| selectEdges-methods | 0.011 | 0.000 | 0.012 | |
| selectNodes-methods | 0.010 | 0.001 | 0.011 | |
| startRedeR | 0 | 0 | 0 | |
| subg | 0.000 | 0.001 | 0.000 | |
| transform.attributes | 0.026 | 0.001 | 0.027 | |
| updateLayoutFromRedeR | 0.013 | 0.001 | 0.013 | |
| version-methods | 0.001 | 0.000 | 0.001 | |