Johannes Griss
| Snapshot Date: 2025-08-18 13:40 -0400 (Mon, 18 Aug 2025) |
| git_url: https://git.bioconductor.org/packages/ReactomeGSA |
| git_branch: RELEASE_3_21 |
| git_last_commit: 6e8adbb |
| git_last_commit_date: 2025-04-15 11:49:59 -0400 (Tue, 15 Apr 2025) |
| Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2025-08-21 11:42 -0400 (Thu, 21 Aug 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4824 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.5.1 RC (2025-06-05 r88288) -- "Great Square Root" | 4604 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" | 4545 |
| kunpeng2 | Linux (openEuler 24.03 LTS) | aarch64 | R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" | 4579 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1728/2341 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| ReactomeGSA 1.22.0 (landing page) Johannes Griss
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| kunpeng2 | Linux (openEuler 24.03 LTS) / aarch64 | OK | ERROR | skipped | ||||||||||
|
To the developers/maintainers of the ReactomeGSA package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ReactomeGSA.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: ReactomeGSA |
| Version: 1.22.0 |
| Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data ReactomeGSA |
| StartedAt: 2025-08-19 03:40:31 -0000 (Tue, 19 Aug 2025) |
| EndedAt: 2025-08-19 03:46:11 -0000 (Tue, 19 Aug 2025) |
| EllapsedTime: 340.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
##############################################################################
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### Running command:
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### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data ReactomeGSA
###
##############################################################################
##############################################################################
* checking for file ‘ReactomeGSA/DESCRIPTION’ ... OK
* preparing ‘ReactomeGSA’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘analysing-scRNAseq.Rmd’ using rmarkdown
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Warning: The vignette title specified in \VignetteIndexEntry{} is different from the title in the YAML metadata. The former is "Analysing single-cell RNAseq data", and the latter is "Analysing single-cell RNA-sequencing Data". If that is intentional, you may set options(rmarkdown.html_vignette.check_title = FALSE) to suppress this check.
--- finished re-building ‘analysing-scRNAseq.Rmd’
--- re-building ‘reanalysing-public-data.Rmd’ using rmarkdown
--- finished re-building ‘reanalysing-public-data.Rmd’
--- re-building ‘using-reactomegsa.Rmd’ using rmarkdown
Quitting from using-reactomegsa.Rmd:203-205 [perform_analysis]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `start_reactome_analysis()`:
! Failed to submit analysis request:
<html><head>
<meta http-equiv="content-type" content="text/html;charset=utf-8">
<title>408 Request Timeout</title>
</head>
<body text=#000000 bgcolor=#ffffff>
<h1>Error: Request Timeout</h1>
<h2>Your client has taken too long to issue its request.</h2>
<h2></h2>
</body></html>
---
Backtrace:
▆
1. └─ReactomeGSA::perform_reactome_analysis(...)
2. └─ReactomeGSA::start_reactome_analysis(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'using-reactomegsa.Rmd' failed with diagnostics:
Failed to submit analysis request:
<html><head>
<meta http-equiv="content-type" content="text/html;charset=utf-8">
<title>408 Request Timeout</title>
</head>
<body text=#000000 bgcolor=#ffffff>
<h1>Error: Request Timeout</h1>
<h2>Your client has taken too long to issue its request.</h2>
<h2></h2>
</body></html>
--- failed re-building ‘using-reactomegsa.Rmd’
SUMMARY: processing the following file failed:
‘using-reactomegsa.Rmd’
Error: Vignette re-building failed.
Execution halted