Multiple platform build/check report for BioC 3.21 - BUILD results for ReactomeContentService4R on kjohnson1

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.3 LTS)	x86_64	4.5.1 (2025-06-13) -- "Great Square Root"	4824
merida1	macOS 12.7.5 Monterey	x86_64	4.5.1 RC (2025-06-05 r88288) -- "Great Square Root"	4606
kjohnson1	macOS 13.6.6 Ventura	arm64	4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root"	4547
kunpeng2	Linux (openEuler 24.03 LTS)	aarch64	R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences"	4579
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for ReactomeContentService4R on kjohnson1

To the developers/maintainers of the ReactomeContentService4R package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ReactomeContentService4R.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: ReactomeContentService4R

Version: 1.16.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data ReactomeContentService4R

StartedAt: 2025-09-02 06:59:32 -0400 (Tue, 02 Sep 2025)

EndedAt: 2025-09-02 06:59:48 -0400 (Tue, 02 Sep 2025)

EllapsedTime: 15.6 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data ReactomeContentService4R
###
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* checking for file ‘ReactomeContentService4R/DESCRIPTION’ ... OK
* preparing ‘ReactomeContentService4R’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘ReactomeContentService4R.Rmd’ using rmarkdown

Quitting from ReactomeContentService4R.Rmd:48-56 [class-species]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `curl::curl_fetch_memory()`:
! Timeout was reached [reactome.org]:
Connection timed out after 10003 milliseconds
---
Backtrace:
    ▆
 1. └─ReactomeContentService4R::getSchemaClass(...)
 2.   └─ReactomeContentService4R:::.matchSpecies(species, "taxId")
 3.     └─ReactomeContentService4R::getSpecies()
 4.       └─ReactomeContentService4R:::.retrieveData(url, as = "text")
 5.         └─base::tryCatch(...)
 6.           └─base (local) tryCatchList(expr, classes, parentenv, handlers)
 7.             └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
 8.               └─value[[3L]](cond)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'ReactomeContentService4R.Rmd' failed with diagnostics:
Timeout was reached [reactome.org]:
Connection timed out after 10003 milliseconds
--- failed re-building ‘ReactomeContentService4R.Rmd’

SUMMARY: processing the following file failed:
  ‘ReactomeContentService4R.Rmd’

Error: Vignette re-building failed.
Execution halted