Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2024-11-20 12:02 -0500 (Wed, 20 Nov 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
teran2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4481 |
nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4479 |
palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" | 4359 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4539 |
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4493 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1683/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
RcisTarget 1.26.0 (landing page) Gert Hulselmans
| teran2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | |||||||||
nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | ||||||||||
palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | OK | ||||||||||
To the developers/maintainers of the RcisTarget package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/RcisTarget.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: RcisTarget |
Version: 1.26.0 |
Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:RcisTarget.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings RcisTarget_1.26.0.tar.gz |
StartedAt: 2024-11-20 08:07:40 -0500 (Wed, 20 Nov 2024) |
EndedAt: 2024-11-20 08:14:05 -0500 (Wed, 20 Nov 2024) |
EllapsedTime: 384.9 seconds |
RetCode: 0 |
Status: OK |
CheckDir: RcisTarget.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:RcisTarget.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings RcisTarget_1.26.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/meat/RcisTarget.Rcheck’ * using R version 4.4.2 (2024-10-31) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 * running under: Ubuntu 24.04.1 LTS * using session charset: UTF-8 * checking for file ‘RcisTarget/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘RcisTarget’ version ‘1.26.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘RcisTarget’ can be installed ... OK * checking installed package size ... NOTE installed size is 12.0Mb sub-directories of 1Mb or more: data 11.4Mb * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... NOTE checkRd: (-1) dbRegionsLoc.Rd:11-14: Lost braces in \itemize; meant \describe ? checkRd: (-1) dbRegionsLoc.Rd:16-19: Lost braces in \itemize; meant \describe ? checkRd: (-1) importAnnotations.Rd:44: Lost braces in \itemize; meant \describe ? checkRd: (-1) importAnnotations.Rd:45: Lost braces in \itemize; meant \describe ? checkRd: (-1) importAnnotations.Rd:46: Lost braces in \itemize; meant \describe ? checkRd: (-1) importAnnotations.Rd:48-51: Lost braces in \itemize; meant \describe ? checkRd: (-1) importAnnotations.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) importAnnotations.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) importAnnotations.Rd:27-31: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) importAnnotations.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) importAnnotations.Rd:33-36: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) motifAnnotations.Rd:18-20: Lost braces in \itemize; meant \describe ? checkRd: (-1) motifAnnotations.Rd:22-24: Lost braces in \itemize; meant \describe ? checkRd: (-1) motifAnnotations.Rd:26-28: Lost braces in \itemize; meant \describe ? checkRd: (-1) motifAnnotations.Rd:54: Lost braces in \itemize; meant \describe ? checkRd: (-1) motifAnnotations.Rd:55: Lost braces in \itemize; meant \describe ? checkRd: (-1) motifAnnotations.Rd:58-61: Lost braces in \itemize; meant \describe ? checkRd: (-1) motifAnnotations.Rd:62: Lost braces in \itemize; meant \describe ? checkRd: (-1) motifAnnotations.Rd:63-66: Lost braces in \itemize; meant \describe ? * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed addMotifAnnotation 16.647 0.770 18.167 addSignificantGenes 11.404 1.165 13.244 getMotifAnnotation 7.256 0.130 7.811 aucScores-class 5.492 0.262 5.895 reRank 5.212 0.024 5.753 rankingRcisTarget-class 4.868 0.026 5.370 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See ‘/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/meat/RcisTarget.Rcheck/00check.log’ for details.
RcisTarget.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD INSTALL RcisTarget ### ############################################################################## ############################################################################## * installing to library ‘/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library’ * installing *source* package ‘RcisTarget’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RcisTarget)
RcisTarget.Rcheck/tests/testthat.Rout
R version 4.4.2 (2024-10-31) -- "Pile of Leaves" Copyright (C) 2024 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(RcisTarget) > > test_check("RcisTarget") [ FAIL 0 | WARN 0 | SKIP 0 | PASS 58 ] > > proc.time() user system elapsed 33.223 5.637 42.761
RcisTarget.Rcheck/RcisTarget-Ex.timings
name | user | system | elapsed | |
RcisTarget | 0.094 | 0.025 | 0.172 | |
addLogo | 0.075 | 0.025 | 0.101 | |
addMotifAnnotation | 16.647 | 0.770 | 18.167 | |
addSignificantGenes | 11.404 | 1.165 | 13.244 | |
aucScores-class | 5.492 | 0.262 | 5.895 | |
calcAUC | 0 | 0 | 0 | |
convertToTargetRegions | 0 | 0 | 0 | |
getDbRegionsLoc | 0 | 0 | 0 | |
getMotifAnnotation | 7.256 | 0.130 | 7.811 | |
importAnnotations | 0.601 | 0.001 | 0.675 | |
importRankings | 0.462 | 0.001 | 0.480 | |
rankingRcisTarget-class | 4.868 | 0.026 | 5.370 | |
reRank | 5.212 | 0.024 | 5.753 | |
showLogo | 0.030 | 0.002 | 0.032 | |