Multiple platform build/check report for BioC 3.21 - BUILD results for RbowtieCuda on kunpeng2

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.1 LTS)	x86_64	R Under development (unstable) (2025-03-13 r87965) -- "Unsuffered Consequences"	4820
palomino7	Windows Server 2022 Datacenter	x64	R Under development (unstable) (2025-03-01 r87860 ucrt) -- "Unsuffered Consequences"	4585
lconway	macOS 12.7.1 Monterey	x86_64	R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences"	4614
kjohnson3	macOS 13.7.1 Ventura	arm64	R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences"	4567
kunpeng2	Linux (openEuler 24.03 LTS)	aarch64	R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences"	4559
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for RbowtieCuda on kunpeng2

To the developers/maintainers of the RbowtieCuda package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/RbowtieCuda.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results

Summary

Package: RbowtieCuda

Version: 0.99.0

Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data RbowtieCuda

StartedAt: 2025-04-09 02:09:53 -0000 (Wed, 09 Apr 2025)

EndedAt: 2025-04-09 02:09:56 -0000 (Wed, 09 Apr 2025)

EllapsedTime: 3.0 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data RbowtieCuda
###
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* checking for file ‘RbowtieCuda/DESCRIPTION’ ... OK
* preparing ‘RbowtieCuda’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
      -----------------------------------
* installing *source* package ‘RbowtieCuda’ ...
** this is package ‘RbowtieCuda’ version ‘0.99.0’
** using staged installation
** libs
cd "../src/nvbio/build" && rm -f CMakeCache.txt && cmake ..
-- The C compiler identification is GNU 12.3.1
-- The CXX compiler identification is GNU 12.3.1
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
CMake Error at /usr/share/cmake/Modules/FindCUDAToolkit.cmake:797 (message):
  Could not find nvcc, please set CUDAToolkit_ROOT.
Call Stack (most recent call first):
  CMakeLists.txt:11 (find_package)


-- Configuring incomplete, errors occurred!
make: *** [Makefile:10: all] Error 1
ERROR: compilation failed for package ‘RbowtieCuda’
* removing ‘/home/biocbuild/tmp/RtmpjZ2jUq/Rinst12dc65196ec63c/RbowtieCuda’
      -----------------------------------
ERROR: package installation failed