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###
### Running command:
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###   F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL Rarr
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* installing to library 'F:/biocbuild/bbs-3.20-bioc/R/library'
* installing *source* package 'Rarr' ...
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 13.3.0'
gcc  -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG     -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c Rarr.c -o Rarr.o
gcc  -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG     -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c bit64_conversion.c -o bit64_conversion.o
gcc  -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG     -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c compress.c -o compress.o
gcc  -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG     -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c decompress.c -o decompress.o
gcc  -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG     -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c float16_conversion.c -o float16_conversion.o
gcc  -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG     -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c type_conversion.c -o type_conversion.o
/usr/bin/make -C compression_tools/zstd
make[1]: Entering directory '/f/biocbuild/bbs-3.20-bioc/meat/Rarr/src/compression_tools/zstd'
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c common/debug.c -o common/debug.o
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c common/entropy_common.c -o common/entropy_common.o
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c common/error_private.c -o common/error_private.o
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c common/fse_decompress.c -o common/fse_decompress.o
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c common/pool.c -o common/pool.o -o common/pool.o
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c common/threading.c -o common/threading.o
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c common/xxhash.c -o common/xxhash.o
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c common/zstd_common.c -o common/zstd_common.o
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c compress/fse_compress.c -o compress/fse_compress.o
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c compress/hist.c -o compress/hist.o
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c compress/huf_compress.c -o compress/huf_compress.o
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c compress/zstd_compress.c -o compress/zstd_compress.o
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c compress/zstd_compress_literals.c -o compress/zstd_compress_literals.o
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c compress/zstd_compress_sequences.c -o compress/zstd_compress_sequences.o
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c compress/zstd_compress_superblock.c -o compress/zstd_compress_superblock.o
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c compress/zstd_double_fast.c -o compress/zstd_double_fast.o
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c compress/zstd_fast.c -o compress/zstd_fast.o
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c compress/zstd_lazy.c -o compress/zstd_lazy.o
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c compress/zstd_ldm.c -o compress/zstd_ldm.o
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c compress/zstd_opt.c -o compress/zstd_opt.o
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c compress/zstdmt_compress.c -o compress/zstdmt_compress.o
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c decompress/huf_decompress.c -o decompress/huf_decompress.o
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c decompress/zstd_ddict.c -o decompress/zstd_ddict.o
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c decompress/zstd_decompress.c -o decompress/zstd_decompress.o
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c decompress/zstd_decompress_block.c -o decompress/zstd_decompress_block.o
rm -f libzstd.a
ar cq libzstd.a common/debug.o common/entropy_common.o common/error_private.o common/fse_decompress.o common/pool.o common/threading.o common/xxhash.o common/zstd_common.o compress/fse_compress.o compress/hist.o compress/huf_compress.o compress/zstd_compress.o compress/zstd_compress_literals.o compress/zstd_compress_sequences.o compress/zstd_compress_superblock.o compress/zstd_double_fast.o compress/zstd_fast.o compress/zstd_lazy.o compress/zstd_ldm.o compress/zstd_opt.o compress/zstdmt_compress.o decompress/huf_decompress.o decompress/zstd_ddict.o decompress/zstd_decompress.o decompress/zstd_decompress_block.o
ranlib libzstd.a
make[1]: Leaving directory '/f/biocbuild/bbs-3.20-bioc/meat/Rarr/src/compression_tools/zstd'
/usr/bin/make -C compression_tools/blosc
make[1]: Entering directory '/f/biocbuild/bbs-3.20-bioc/meat/Rarr/src/compression_tools/blosc'
/usr/bin/make -C lib/snappy-1.1.1
make[2]: Entering directory '/f/biocbuild/bbs-3.20-bioc/meat/Rarr/src/compression_tools/blosc/lib/snappy-1.1.1'
g++ -std=gnu++17     -IF:/biocbuild/bbs-3.20-bioc/R/include -IF:/biocbuild/bbs-3.20-bioc/R/include/x64 -DUSING_R  -c snappy.cc
g++ -std=gnu++17     -IF:/biocbuild/bbs-3.20-bioc/R/include -IF:/biocbuild/bbs-3.20-bioc/R/include/x64 -DUSING_R  -c snappy-c.cc
g++ -std=gnu++17     -IF:/biocbuild/bbs-3.20-bioc/R/include -IF:/biocbuild/bbs-3.20-bioc/R/include/x64 -DUSING_R  -c snappy-sinksource.cc
g++ -std=gnu++17     -IF:/biocbuild/bbs-3.20-bioc/R/include -IF:/biocbuild/bbs-3.20-bioc/R/include/x64 -DUSING_R  -c snappy-stubs-internal.cc
make[2]: Leaving directory '/f/biocbuild/bbs-3.20-bioc/meat/Rarr/src/compression_tools/blosc/lib/snappy-1.1.1'
/usr/bin/make -C lib/lz4-1.9.2
make[2]: Entering directory '/f/biocbuild/bbs-3.20-bioc/meat/Rarr/src/compression_tools/blosc/lib/lz4-1.9.2'
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -DNLZ4_DEBUG -c lz4.c
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -DNLZ4_DEBUG -c lz4hc.c
make[2]: Leaving directory '/f/biocbuild/bbs-3.20-bioc/meat/Rarr/src/compression_tools/blosc/lib/lz4-1.9.2'
/usr/bin/make -C lib/blosc-1.20.1 all
make[2]: Entering directory '/f/biocbuild/bbs-3.20-bioc/meat/Rarr/src/compression_tools/blosc/lib/blosc-1.20.1'
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign   -IF:/biocbuild/bbs-3.20-bioc/R/include -IF:/biocbuild/bbs-3.20-bioc/R/include/x64 -I../lz4-1.9.2 -I../snappy-1.1.1 -I../../../zstd -msse2  -DUSING_R  -c bitshuffle-sse2.c
bitshuffle-sse2.c: In function 'blosc_internal_bshuf_trans_byte_elem_sse2':
bitshuffle-sse2.c:260:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes]
  260 | }
      | ^
bitshuffle-sse2.c: In function 'blosc_internal_bshuf_trans_bit_elem_sse2':
bitshuffle-sse2.c:308:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes]
  308 | }
      | ^
bitshuffle-sse2.c: In function 'blosc_internal_bshuf_trans_byte_bitrow_sse2':
bitshuffle-sse2.c:414:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes]
  414 | }
      | ^
bitshuffle-sse2.c: In function 'blosc_internal_bshuf_shuffle_bit_eightelem_sse2':
bitshuffle-sse2.c:451:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes]
  451 | }
      | ^
bitshuffle-sse2.c: In function 'blosc_internal_bshuf_untrans_bit_elem_sse2':
bitshuffle-sse2.c:467:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes]
  467 | }
      | ^
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign   -IF:/biocbuild/bbs-3.20-bioc/R/include -IF:/biocbuild/bbs-3.20-bioc/R/include/x64 -I../lz4-1.9.2 -I../snappy-1.1.1 -I../../../zstd -msse2  -DUSING_R  -c shuffle-sse2.c
shuffle-sse2.c: In function 'blosc_internal_shuffle_sse2':
shuffle-sse2.c:568:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes]
  568 | }
      | ^
shuffle-sse2.c: In function 'blosc_internal_unshuffle_sse2':
shuffle-sse2.c:626:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes]
  626 | }
      | ^
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign   -IF:/biocbuild/bbs-3.20-bioc/R/include -IF:/biocbuild/bbs-3.20-bioc/R/include/x64 -I../lz4-1.9.2 -I../snappy-1.1.1 -I../../../zstd -msse2  -DUSING_R  -c bitshuffle-generic.c
bitshuffle-generic.c: In function 'blosc_internal_bshuf_trans_byte_elem_remainder':
bitshuffle-generic.c:40:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes]
   40 | }
      | ^
bitshuffle-generic.c: In function 'blosc_internal_bshuf_trans_byte_elem_scal':
bitshuffle-generic.c:48:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes]
   48 | }
      | ^
bitshuffle-generic.c: In function 'blosc_internal_bshuf_trans_bit_byte_remainder':
bitshuffle-generic.c:85:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes]
   85 | }
      | ^
bitshuffle-generic.c: In function 'blosc_internal_bshuf_trans_elem':
bitshuffle-generic.c:109:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes]
  109 | }
      | ^
bitshuffle-generic.c: In function 'blosc_internal_bshuf_trans_bitrow_eight':
bitshuffle-generic.c:121:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes]
  121 | }
      | ^
bitshuffle-generic.c: In function 'blosc_internal_bshuf_trans_bit_elem_scal':
bitshuffle-generic.c:139:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes]
  139 | }
      | ^
bitshuffle-generic.c: In function 'blosc_internal_bshuf_shuffle_bit_eightelem_scal':
bitshuffle-generic.c:204:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes]
  204 | }
      | ^
bitshuffle-generic.c: In function 'blosc_internal_bshuf_untrans_bit_elem_scal':
bitshuffle-generic.c:220:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes]
  220 | }
      | ^
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign   -IF:/biocbuild/bbs-3.20-bioc/R/include -IF:/biocbuild/bbs-3.20-bioc/R/include/x64 -I../lz4-1.9.2 -I../snappy-1.1.1 -I../../../zstd -msse2  -DUSING_R  -c shuffle-generic.c
shuffle-generic.c: In function 'blosc_internal_shuffle_generic':
shuffle-generic.c:17:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes]
   17 | }
      | ^
shuffle-generic.c: In function 'blosc_internal_unshuffle_generic':
shuffle-generic.c:25:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes]
   25 | }
      | ^
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign   -IF:/biocbuild/bbs-3.20-bioc/R/include -IF:/biocbuild/bbs-3.20-bioc/R/include/x64 -I../lz4-1.9.2 -I../snappy-1.1.1 -I../../../zstd -msse2  -DUSING_R  -DSHUFFLE_SSE2_ENABLED  -c shuffle.c
In file included from shuffle.c:12:
shuffle-generic.h:61:13: warning: 'unshuffle_generic_inline' defined but not used [-Wunused-function]
   61 | static void unshuffle_generic_inline(const size_t type_size,
      |             ^~~~~~~~~~~~~~~~~~~~~~~~
shuffle-generic.h:32:13: warning: 'shuffle_generic_inline' defined but not used [-Wunused-function]
   32 | static void shuffle_generic_inline(const size_t type_size,
      |             ^~~~~~~~~~~~~~~~~~~~~~
shuffle.c: In function 'blosc_internal_shuffle':
shuffle.c:390:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes]
  390 | }
      | ^
shuffle.c: In function 'blosc_internal_unshuffle':
shuffle.c:403:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes]
  403 | }
      | ^
shuffle.c: In function 'blosc_internal_bitshuffle':
shuffle.c:430:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes]
  430 | }
      | ^
shuffle.c: In function 'blosc_internal_bitunshuffle':
shuffle.c:457:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes]
  457 | }
      | ^
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign   -IF:/biocbuild/bbs-3.20-bioc/R/include -IF:/biocbuild/bbs-3.20-bioc/R/include/x64 -I../lz4-1.9.2 -I../snappy-1.1.1 -I../../../zstd -msse2  -DUSING_R  -c blosclz.c
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign   -IF:/biocbuild/bbs-3.20-bioc/R/include -IF:/biocbuild/bbs-3.20-bioc/R/include/x64 -I../lz4-1.9.2 -I../snappy-1.1.1 -I../../../zstd -msse2  -DUSING_R  -c blosc.c
blosc.c:303:12: warning: 'compname_to_clibcode' defined but not used [-Wunused-function]
  303 | static int compname_to_clibcode(const char *compname)
      |            ^~~~~~~~~~~~~~~~~~~~
blosc.c:156:16: warning: 'g_atfork_registered' defined but not used [-Wunused-variable]
  156 | static int32_t g_atfork_registered = 0;
      |                ^~~~~~~~~~~~~~~~~~~
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign   -IF:/biocbuild/bbs-3.20-bioc/R/include -IF:/biocbuild/bbs-3.20-bioc/R/include/x64 -I../lz4-1.9.2 -I../snappy-1.1.1 -I../../../zstd -msse2  -DUSING_R  -c fastcopy.c
make[2]: Leaving directory '/f/biocbuild/bbs-3.20-bioc/meat/Rarr/src/compression_tools/blosc/lib/blosc-1.20.1'
rm -f libblosc.a
ar cq libblosc.a lib/blosc-1.20.1/blosc.o lib/blosc-1.20.1/shuffle-sse2.o lib/blosc-1.20.1/bitshuffle-generic.o lib/blosc-1.20.1/blosclz.o lib/blosc-1.20.1/shuffle.o lib/blosc-1.20.1/bitshuffle-sse2.o lib/blosc-1.20.1/fastcopy.o lib/blosc-1.20.1/shuffle-generic.o lib/snappy-1.1.1/snappy.o lib/snappy-1.1.1/snappy-c.o lib/snappy-1.1.1/snappy-sinksource.o lib/snappy-1.1.1/snappy-stubs-internal.o lib/lz4-1.9.2/lz4.o lib/lz4-1.9.2/lz4hc.o
ranlib libblosc.a
make[1]: Leaving directory '/f/biocbuild/bbs-3.20-bioc/meat/Rarr/src/compression_tools/blosc'
C:\rtools44\x86_64-w64-mingw32.static.posix\bin\nm.exe: 'compression_libs': No such file
gcc -shared -s -static-libgcc -o Rarr.dll tmp.def Rarr.o bit64_conversion.o compress.o decompress.o float16_conversion.o type_conversion.o compression_tools/blosc/libblosc.a compression_tools/zstd/libzstd.a -lz -lstdc++ -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.20-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.20-bioc/R/library/00LOCK-Rarr/00new/Rarr/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Rarr)