Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2024-12-23 12:08 -0500 (Mon, 23 Dec 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4744 |
palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" | 4487 |
merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4515 |
kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4467 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1725/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
RESOLVE 1.8.0 (landing page) Luca De Sano
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | |||||||||
palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | |||||||||
To the developers/maintainers of the RESOLVE package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/RESOLVE.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: RESOLVE |
Version: 1.8.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:RESOLVE.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings RESOLVE_1.8.0.tar.gz |
StartedAt: 2024-12-21 06:33:59 -0500 (Sat, 21 Dec 2024) |
EndedAt: 2024-12-21 06:50:45 -0500 (Sat, 21 Dec 2024) |
EllapsedTime: 1006.2 seconds |
RetCode: 0 |
Status: OK |
CheckDir: RESOLVE.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:RESOLVE.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings RESOLVE_1.8.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.20-bioc/meat/RESOLVE.Rcheck’ * using R version 4.4.2 (2024-10-31) * using platform: aarch64-apple-darwin20 * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0 * running under: macOS Ventura 13.7.1 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘RESOLVE/DESCRIPTION’ ... OK * this is package ‘RESOLVE’ version ‘1.8.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘RESOLVE’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed signaturesSignificance 164.885 0.399 165.720 signaturesCV 128.096 0.379 128.737 signaturesDecomposition 93.445 0.295 101.369 signaturesAssignment 52.257 0.160 52.640 getMNVCounts 11.866 0.097 11.968 getIDCounts 5.855 0.405 6.365 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
RESOLVE.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL RESOLVE ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library’ * installing *source* package ‘RESOLVE’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RESOLVE)
RESOLVE.Rcheck/tests/testthat.Rout
R version 4.4.2 (2024-10-31) -- "Pile of Leaves" Copyright (C) 2024 The R Foundation for Statistical Computing Platform: aarch64-apple-darwin20 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > Sys.setenv("R_TESTS" = "") > > library("testthat") > library("RESOLVE") > > test_check("RESOLVE") [ FAIL 0 | WARN 203 | SKIP 0 | PASS 6 ] [ FAIL 0 | WARN 203 | SKIP 0 | PASS 6 ] > > proc.time() user system elapsed 222.256 1.509 224.011
RESOLVE.Rcheck/RESOLVE-Ex.timings
name | user | system | elapsed | |
getCNCounts | 0.012 | 0.003 | 0.015 | |
getIDCounts | 5.855 | 0.405 | 6.365 | |
getMNVCounts | 11.866 | 0.097 | 11.968 | |
getSBSCounts | 1.296 | 0.704 | 3.791 | |
groupsCNPlot | 3.876 | 0.087 | 3.803 | |
groupsCXPlot | 1.643 | 0.012 | 1.655 | |
groupsIDPlot | 3.761 | 0.014 | 3.777 | |
groupsMNVPlot | 3.397 | 0.210 | 3.609 | |
groupsSBSPlot | 3.165 | 0.039 | 3.205 | |
patientsCNPlot | 1.189 | 0.006 | 1.195 | |
patientsCXPlot | 0.591 | 0.005 | 0.596 | |
patientsIDPlot | 1.739 | 0.010 | 1.749 | |
patientsMNVPlot | 1.194 | 0.006 | 1.201 | |
patientsSBSPlot | 0.762 | 0.005 | 0.767 | |
signaturesAssignment | 52.257 | 0.160 | 52.640 | |
signaturesCNPlot | 1.719 | 0.025 | 1.753 | |
signaturesCV | 128.096 | 0.379 | 128.737 | |
signaturesCXPlot | 0.799 | 0.011 | 0.810 | |
signaturesDecomposition | 93.445 | 0.295 | 101.369 | |
signaturesIDPlot | 2.534 | 0.032 | 2.566 | |
signaturesMNVPlot | 1.649 | 0.009 | 1.659 | |
signaturesSBSPlot | 1.107 | 0.006 | 1.114 | |
signaturesSignificance | 164.885 | 0.399 | 165.720 | |