Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2024-06-11 15:41 -0400 (Tue, 11 Jun 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.0 RC (2024-04-16 r86468) -- "Puppy Cup" | 4679 |
palomino4 | Windows Server 2022 Datacenter | x64 | 4.4.0 RC (2024-04-16 r86468 ucrt) -- "Puppy Cup" | 4414 |
merida1 | macOS 12.7.4 Monterey | x86_64 | 4.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" | 4441 |
kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" | 4394 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1522/2239 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
Pigengene 1.31.0 (landing page) Habil Zare
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
palomino4 | Windows Server 2022 Datacenter / x64 | OK | ERROR | skipped | skipped | |||||||||
merida1 | macOS 12.7.4 Monterey / x86_64 | OK | ERROR | skipped | skipped | |||||||||
kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
To the developers/maintainers of the Pigengene package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Pigengene.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: Pigengene |
Version: 1.31.0 |
Command: chmod a+r Pigengene -R && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data Pigengene |
StartedAt: 2024-06-09 21:14:25 -0400 (Sun, 09 Jun 2024) |
EndedAt: 2024-06-09 21:20:46 -0400 (Sun, 09 Jun 2024) |
EllapsedTime: 380.5 seconds |
RetCode: 1 |
Status: ERROR |
PackageFile: None |
PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### chmod a+r Pigengene -R && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data Pigengene ### ############################################################################## ############################################################################## * checking for file 'Pigengene/DESCRIPTION' ... OK * preparing 'Pigengene': * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building 'Pigengene_inference.Rnw' using knitr pdftex: major issue: User/administrator updates are out-of-sync. pdfcrop: major issue: User/administrator updates are out-of-sync. pdftex: major issue: User/administrator updates are out-of-sync. pdfcrop: major issue: User/administrator updates are out-of-sync. pdftex: major issue: User/administrator updates are out-of-sync. pdfcrop: major issue: User/administrator updates are out-of-sync. pdftex: major issue: User/administrator updates are out-of-sync. pdfcrop: major issue: User/administrator updates are out-of-sync. texify: major issue: User/administrator updates are out-of-sync. Warning in system(paste(shQuote(texi2dvi), if (quiet) "--quiet" else "", : running command '"C:\PROGRA~1\MiKTeX\miktex\bin\x64\texify.exe" --quiet --pdf "Pigengene_inference.tex" --max-iterations=20 -I "F:/biocbuild/bbs-3.20-bioc/R/share/texmf/tex/latex" -I "F:/biocbuild/bbs-3.20-bioc/R/share/texmf/bibtex/bst"' had status 1 Error: processing vignette 'Pigengene_inference.Rnw' failed with diagnostics: running 'texi2dvi' on 'Pigengene_inference.tex' failed LaTeX errors: ttes/Pigengene_inference.tex:133: Package xcolor Error: Undefined color `fgcolo r'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ttes/Pigengene_inference.tex:173: Package xcolor Error: Undefined color `fgcolo r'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ttes/Pigengene_inference.tex:217: Package xcolor Error: Undefined color `fgcolo r'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ttes/Pigengene_inference.tex:229: Package xcolor Error: Undefined color `fgcolo r'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ttes/Pigengene_inference.tex:250: Package xcolor Error: Undefined color `fgcolo r'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ttes/Pigengene_inference.tex:262: Package xcolor Error: Undefined color `fgcolo r'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ttes/Pigengene_inference.tex:278: Package xcolor Error: Undefined color `fgcolo r'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ttes/Pigengene_inference.tex:296: Package xcolor Error: Undefined color `fgcolo r'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ttes/Pigengene_inference.tex:323: Package xcolor Error: Undefined color `fgcolo r'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ttes/Pigengene_inference.tex:366: Package xcolor Error: Undefined color `fgcolo r'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ttes/Pigengene_inference.tex:397: Package xcolor Error: Undefined color `fgcolo r'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ttes/Pigengene_inference.tex:408: Package xcolor Error: Undefined color `fgcolo r'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ttes/Pigengene_inference.tex:455: Package xcolor Error: Undefined color `fgcolo r'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ttes/Pigengene_inference.tex:472: Package xcolor Error: Undefined color `fgcolo r'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ttes/Pigengene_inference.tex:504: Package xcolor Error: Undefined color `fgcolo r'. See the xcolor package documentation for explanation. Type H <return> for immediate help. --- failed re-building 'Pigengene_inference.Rnw' SUMMARY: processing the following file failed: 'Pigengene_inference.Rnw' Error: Vignette re-building failed. Execution halted