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This page was generated on 2025-10-13 12:06 -0400 (Mon, 13 Oct 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.3 LTS)x86_644.5.1 Patched (2025-08-23 r88802) -- "Great Square Root" 4864
lconwaymacOS 12.7.1 Montereyx86_644.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" 4652
kjohnson3macOS 13.7.7 Venturaarm644.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" 4597
taishanLinux (openEuler 24.03 LTS)aarch644.5.0 (2025-04-11) -- "How About a Twenty-Six" 4586
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1595/2346HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
PIUMA 1.5.0  (landing page)
Mattia Chiesa
Snapshot Date: 2025-10-12 13:45 -0400 (Sun, 12 Oct 2025)
git_url: https://git.bioconductor.org/packages/PIUMA
git_branch: devel
git_last_commit: a82e3e6
git_last_commit_date: 2025-04-15 13:33:33 -0400 (Tue, 15 Apr 2025)
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
taishanLinux (openEuler 24.03 LTS) / aarch64  OK    ERROR  skipped

BUILD BIN results for PIUMA on kjohnson3

To the developers/maintainers of the PIUMA package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/PIUMA.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: PIUMA
Version: 1.5.0
Command: rm -rf PIUMA.buildbin-libdir && mkdir PIUMA.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh PIUMA_1.5.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R PIUMA.buildbin-libdir
StartedAt: 2025-10-12 22:48:12 -0400 (Sun, 12 Oct 2025)
EndedAt: 2025-10-12 22:48:25 -0400 (Sun, 12 Oct 2025)
EllapsedTime: 13.3 seconds
RetCode: 0
Status:   OK  
PackageFile: PIUMA_1.5.0.tgz
PackageFileSize: 3.088 MiB

Command output

##############################################################################
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###
### Running command:
###
###   rm -rf PIUMA.buildbin-libdir && mkdir PIUMA.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh PIUMA_1.5.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R PIUMA.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=PIUMA.buildbin-libdir PIUMA_1.5.0.tar.gz'
>>>>>>> 

* installing *source* package ‘PIUMA’ ...
** this is package ‘PIUMA’ version ‘1.5.0’
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
in method for ‘getOrigData’ with signature ‘x="TDAobj"’: no definition for class “TDAobj”
in method for ‘setOrigData’ with signature ‘x="TDAobj"’: no definition for class “TDAobj”
in method for ‘getScaledData’ with signature ‘x="TDAobj"’: no definition for class “TDAobj”
in method for ‘setScaledData’ with signature ‘x="TDAobj"’: no definition for class “TDAobj”
in method for ‘getOutcomeFact’ with signature ‘x="TDAobj"’: no definition for class “TDAobj”
in method for ‘setOutcomeFact’ with signature ‘x="TDAobj"’: no definition for class “TDAobj”
in method for ‘getOutcome’ with signature ‘x="TDAobj"’: no definition for class “TDAobj”
in method for ‘setOutcome’ with signature ‘x="TDAobj"’: no definition for class “TDAobj”
in method for ‘getComp’ with signature ‘x="TDAobj"’: no definition for class “TDAobj”
in method for ‘setComp’ with signature ‘x="TDAobj"’: no definition for class “TDAobj”
in method for ‘getDistMat’ with signature ‘x="TDAobj"’: no definition for class “TDAobj”
in method for ‘setDistMat’ with signature ‘x="TDAobj"’: no definition for class “TDAobj”
in method for ‘getDfMapper’ with signature ‘x="TDAobj"’: no definition for class “TDAobj”
in method for ‘setDfMapper’ with signature ‘x="TDAobj"’: no definition for class “TDAobj”
in method for ‘getJacc’ with signature ‘x="TDAobj"’: no definition for class “TDAobj”
in method for ‘setJacc’ with signature ‘x="TDAobj"’: no definition for class “TDAobj”
in method for ‘getNodeDataMat’ with signature ‘x="TDAobj"’: no definition for class “TDAobj”
in method for ‘setNodeDataMat’ with signature ‘x="TDAobj"’: no definition for class “TDAobj”
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (PIUMA)