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This page was generated on 2024-12-23 12:04 -0500 (Mon, 23 Dec 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.1 LTS)x86_644.4.2 (2024-10-31) -- "Pile of Leaves" 4744
palomino8Windows Server 2022 Datacenterx644.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" 4487
merida1macOS 12.7.5 Montereyx86_644.4.2 (2024-10-31) -- "Pile of Leaves" 4515
kjohnson1macOS 13.6.6 Venturaarm644.4.2 (2024-10-31) -- "Pile of Leaves" 4467
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1554/2289HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
PING 2.50.0  (landing page)
Renan Sauteraud
Snapshot Date: 2024-12-19 13:00 -0500 (Thu, 19 Dec 2024)
git_url: https://git.bioconductor.org/packages/PING
git_branch: RELEASE_3_20
git_last_commit: 0e7d062
git_last_commit_date: 2024-10-29 09:40:21 -0500 (Tue, 29 Oct 2024)
nebbiolo2Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
palomino8Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
merida1macOS 12.7.5 Monterey / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
kjohnson1macOS 13.6.6 Ventura / arm64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published


INSTALL results for PING on nebbiolo2

To the developers/maintainers of the PING package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/PING.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: PING
Version: 2.50.0
Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD INSTALL PING
StartedAt: 2024-12-19 15:56:12 -0500 (Thu, 19 Dec 2024)
EndedAt: 2024-12-19 15:57:04 -0500 (Thu, 19 Dec 2024)
EllapsedTime: 52.0 seconds
RetCode: 0
Status:   OK  

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD INSTALL PING
###
##############################################################################
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* installing to library ‘/home/biocbuild/bbs-3.20-bioc/R/site-library’
* installing *source* package ‘PING’ ...
** using staged installation
checking for pkg-config... /usr/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for GSL... yes
configure: creating ./config.status
config.status: creating src/Makevars
** libs
using C compiler: ‘gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
gcc -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2  -Wall -c init.c -o init.o
gcc -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2  -Wall -c ping.c -o ping.o
ping.c: In function ‘fitModelAllk’:
ping.c:145:40: warning: suggest parentheses around comparison in operand of ‘&’ [-Wparentheses]
  145 |   if( REAL(VECTOR_ELT(paraPrior, 5))[0]>0 & REAL(VECTOR_ELT(paraEM, 0))[0]==0) // automatically decide minK and maxKK for histone data, when minK=0
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
ping.c: In function ‘ECM2’:
ping.c:1536:16: warning: variable ‘chiSum’ set but not used [-Wunused-but-set-variable]
 1536 |         double chiSum = 0, etaF, etaR, dd, cc;
      |                ^~~~~~
ping.c: In function ‘mergePeak’:
ping.c:3280:20: warning: variable ‘tstatMax’ set but not used [-Wunused-but-set-variable]
 3280 |   double tstat=0.0,tstatMax=0.0;
      |                    ^~~~~~~~
ping.c: In function ‘fitModelK’:
ping.c:553:23: warning: ‘ans’ may be used uninitialized [-Wmaybe-uninitialized]
  553 |                 return(ans);
      |                       ^
ping.c:477:14: note: ‘ans’ was declared here
  477 |         SEXP ans, temp, firstFit;
      |              ^~~
gcc -shared -L/home/biocbuild/bbs-3.20-bioc/R/lib -L/usr/local/lib -o PING.so init.o ping.o -lgsl -lgslcblas -lm -L/home/biocbuild/bbs-3.20-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.20-bioc/R/site-library/00LOCK-PING/00new/PING/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (PING)