Back to Multiple platform build/check report for BioC 3.22:   simplified   long
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This page was generated on 2025-11-01 12:03 -0400 (Sat, 01 Nov 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.3 LTS)x86_644.5.1 Patched (2025-08-23 r88802) -- "Great Square Root" 4901
lconwaymacOS 12.7.6 Montereyx86_644.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" 4691
kjohnson3macOS 13.7.7 Venturaarm644.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" 4637
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1516/2361HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
OpenStats 1.22.0  (landing page)
Marina Kan
Snapshot Date: 2025-10-31 13:45 -0400 (Fri, 31 Oct 2025)
git_url: https://git.bioconductor.org/packages/OpenStats
git_branch: RELEASE_3_22
git_last_commit: c2e418f
git_last_commit_date: 2025-10-29 10:58:46 -0400 (Wed, 29 Oct 2025)
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.6 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published


CHECK results for OpenStats on nebbiolo2

To the developers/maintainers of the OpenStats package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/OpenStats.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: OpenStats
Version: 1.22.0
Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --install=check:OpenStats.install-out.txt --library=/home/biocbuild/bbs-3.22-bioc/R/site-library --timings OpenStats_1.22.0.tar.gz
StartedAt: 2025-11-01 02:27:40 -0400 (Sat, 01 Nov 2025)
EndedAt: 2025-11-01 02:29:30 -0400 (Sat, 01 Nov 2025)
EllapsedTime: 110.1 seconds
RetCode: 0
Status:   OK  
CheckDir: OpenStats.Rcheck
Warnings: 0

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --install=check:OpenStats.install-out.txt --library=/home/biocbuild/bbs-3.22-bioc/R/site-library --timings OpenStats_1.22.0.tar.gz
###
##############################################################################
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* using log directory ‘/home/biocbuild/bbs-3.22-bioc/meat/OpenStats.Rcheck’
* using R version 4.5.1 Patched (2025-08-23 r88802)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
    GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.3 LTS
* using session charset: UTF-8
* checking for file ‘OpenStats/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘OpenStats’ version ‘1.22.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘OpenStats’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) OpenStatsAnalysis.Rd:108: Escaped LaTeX specials: \& \& \& \& \&
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.22-bioc/meat/OpenStats.Rcheck/00check.log’
for details.


Installation output

OpenStats.Rcheck/00install.out

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###
### Running command:
###
###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD INSTALL OpenStats
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.22-bioc/R/site-library’
* installing *source* package ‘OpenStats’ ...
** this is package ‘OpenStats’ version ‘1.22.0’
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (OpenStats)

Tests output


Example timings

OpenStats.Rcheck/OpenStats-Ex.timings

nameusersystemelapsed
OpenStatsAnalysis1.7160.0481.766
OpenStatsBuilder000
OpenStatsComplementarySplit1.2360.0051.241
OpenStatsList1.0250.0561.125
OpenStatsReport1.8030.1471.955
plot.OpenStats0.5580.0850.654
plot.OpenStatsComplementarySplit1.3740.1031.480
plot.OpenStatsFE0.0700.0010.071
plot.OpenStatsMM0.4930.0260.521
plot.OpenStatsRR0.2520.0390.292
print.OpenStats0.5590.0640.645
print.OpenStatsComplementarySplit1.7350.1111.850
print.OpenStatsFE0.0620.0030.065
print.OpenStatsMM0.4660.0610.531
print.OpenStatsRR0.2370.0170.256
summary.OpenStats0.5320.0310.584
summary.OpenStatsComplementarySplit1.3100.0691.384
summary.OpenStatsFE0.0620.0020.064
summary.OpenStatsMM0.4670.0180.487
summary.OpenStatsRR0.2390.0180.257