Ahmed Mohamed
| Snapshot Date: 2024-11-19 13:40 -0500 (Tue, 19 Nov 2024) |
| git_url: https://git.bioconductor.org/packages/NetPathMiner |
| git_branch: RELEASE_3_20 |
| git_last_commit: 97bf773 |
| git_last_commit_date: 2024-10-29 11:34:22 -0500 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2024-11-20 12:07 -0500 (Wed, 20 Nov 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| teran2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4481 |
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4479 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" | 4359 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4539 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4493 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1409/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| NetPathMiner 1.42.0 (landing page) Ahmed Mohamed
| teran2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | ||||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | ... NOT SUPPORTED ... | ||||||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the NetPathMiner package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/NetPathMiner.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: NetPathMiner |
| Version: 1.42.0 |
| Command: /home/biocbuild/R/R/bin/R CMD INSTALL NetPathMiner |
| StartedAt: 2024-11-19 20:29:03 -0000 (Tue, 19 Nov 2024) |
| EndedAt: 2024-11-19 20:29:20 -0000 (Tue, 19 Nov 2024) |
| EllapsedTime: 17.2 seconds |
| RetCode: 0 |
| Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD INSTALL NetPathMiner ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-4.4.1/site-library’ * installing *source* package ‘NetPathMiner’ ... ** using staged installation 'config' variable 'CPP' is defunct checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -E checking for xmlParseFile in -lxml2... yes checking for readSBML in -lsbml... no SBML not found. libXML2 found checking for xml2-config... /home/biocbuild/miniforge3/bin/xml2-config configure: creating ./config.status config.status: creating src/Makevars ** libs using C compiler: ‘gcc (conda-forge gcc 14.2.0-1) 14.2.0’ using C++ compiler: ‘g++ (conda-forge gcc 14.2.0-1) 14.2.0’ gcc -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG -I/usr/local/include -DHAVE_XML -I/home/biocbuild/miniforge3/include/libxml2 -I/home/biocbuild/miniforge3/include -I/usr/local/include -fPIC -g -O2 -Wall -c handlesegfault.c -o handlesegfault.o gcc -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG -I/usr/local/include -DHAVE_XML -I/home/biocbuild/miniforge3/include/libxml2 -I/home/biocbuild/miniforge3/include -I/usr/local/include -fPIC -g -O2 -Wall -c hme3m.c -o hme3m.o gcc -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG -I/usr/local/include -DHAVE_XML -I/home/biocbuild/miniforge3/include/libxml2 -I/home/biocbuild/miniforge3/include -I/usr/local/include -fPIC -g -O2 -Wall -c init.c -o init.o g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG -I/usr/local/include -DHAVE_XML -I/home/biocbuild/miniforge3/include/libxml2 -I/home/biocbuild/miniforge3/include -I/usr/local/include -fPIC -g -O2 -Wall -c kgml_interface.cpp -o kgml_interface.o g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG -I/usr/local/include -DHAVE_XML -I/home/biocbuild/miniforge3/include/libxml2 -I/home/biocbuild/miniforge3/include -I/usr/local/include -fPIC -g -O2 -Wall -c methods.cpp -o methods.o g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG -I/usr/local/include -DHAVE_XML -I/home/biocbuild/miniforge3/include/libxml2 -I/home/biocbuild/miniforge3/include -I/usr/local/include -fPIC -g -O2 -Wall -c sbml_interface.cpp -o sbml_interface.o g++ -std=gnu++17 -shared -L/home/biocbuild/R/R-4.4.1/lib -L/usr/local/lib -o NetPathMiner.so handlesegfault.o hme3m.o init.o kgml_interface.o methods.o sbml_interface.o -lxml2 -L/home/biocbuild/miniforge3/lib -lxml2 -L/home/biocbuild/miniforge3/lib -lz -L/home/biocbuild/miniforge3/lib -llzma -L/home/biocbuild/miniforge3/lib -licui18n -licuuc -licudata -L/home/biocbuild/miniforge3/lib -lm -ldl -lopenblas -L/usr/lib/gcc/aarch64-linux-gnu/10.3.1 -lgfortran -lm -L/home/biocbuild/R/R-4.4.1/lib -lR installing to /home/biocbuild/R/R-4.4.1/site-library/00LOCK-NetPathMiner/00new/NetPathMiner/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (NetPathMiner)