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This page was generated on 2024-11-09 21:31 -0500 (Sat, 09 Nov 2024).

HostnameOSArch (*)R versionInstalled pkgs
teran2Linux (Ubuntu 24.04.1 LTS)x86_644.4.1 (2024-06-14) -- "Race for Your Life" 4505
palomino8Windows Server 2022 Datacenterx644.4.1 (2024-06-14 ucrt) -- "Race for Your Life" 4506
lconwaymacOS 12.7.1 Montereyx86_644.4.1 (2024-06-14) -- "Race for Your Life" 4538
kjohnson3macOS 13.6.5 Venturaarm644.4.1 (2024-06-14) -- "Race for Your Life" 4486
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch644.4.1 (2024-06-14) -- "Race for Your Life" 4493
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1382/2289HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
MutationalPatterns 3.16.0  (landing page)
Mark van Roosmalen
Snapshot Date: 2024-11-08 13:40 -0500 (Fri, 08 Nov 2024)
git_url: https://git.bioconductor.org/packages/MutationalPatterns
git_branch: RELEASE_3_20
git_last_commit: 2e812c5
git_last_commit_date: 2024-10-29 10:15:06 -0500 (Tue, 29 Oct 2024)
teran2Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino8Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    ERROR  skippedskipped
kjohnson3macOS 13.6.5 Ventura / arm64  OK    ERROR  skippedskipped
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    ERROR  skipped

BUILD results for MutationalPatterns on kjohnson3

To the developers/maintainers of the MutationalPatterns package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MutationalPatterns.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: MutationalPatterns
Version: 3.16.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data MutationalPatterns
StartedAt: 2024-11-08 18:19:56 -0500 (Fri, 08 Nov 2024)
EndedAt: 2024-11-08 18:21:01 -0500 (Fri, 08 Nov 2024)
EllapsedTime: 64.7 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data MutationalPatterns
###
##############################################################################
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* checking for file ‘MutationalPatterns/DESCRIPTION’ ... OK
* preparing ‘MutationalPatterns’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘Introduction_to_MutationalPatterns.Rmd’ using rmarkdown
2024-11-08 18:20:21.614 R[96076:2538505] XType: Using static font registry.

Quitting from lines 536-543 [use_bayesnmf] (Introduction_to_MutationalPatterns.Rmd)
Error: processing vignette 'Introduction_to_MutationalPatterns.Rmd' failed with diagnostics:
there is no package called 'ccfindR'
--- failed re-building ‘Introduction_to_MutationalPatterns.Rmd’

SUMMARY: processing the following file failed:
  ‘Introduction_to_MutationalPatterns.Rmd’

Error: Vignette re-building failed.
Execution halted