Multiple platform build/check report for BioC 3.20 - INSTALL results for Mulcom on nebbiolo2

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 24.04.1 LTS)	x86_64	4.4.2 (2024-10-31) -- "Pile of Leaves"	4744
palomino8	Windows Server 2022 Datacenter	x64	4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves"	4487
merida1	macOS 12.7.5 Monterey	x86_64	4.4.2 (2024-10-31) -- "Pile of Leaves"	4515
kjohnson1	macOS 13.6.6 Ventura	arm64	4.4.2 (2024-10-31) -- "Pile of Leaves"	4467
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

INSTALL results for Mulcom on nebbiolo2

To the developers/maintainers of the Mulcom package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Mulcom.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: Mulcom

Version: 1.56.0

Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD INSTALL Mulcom

StartedAt: 2024-12-19 15:08:41 -0500 (Thu, 19 Dec 2024)

EndedAt: 2024-12-19 15:08:48 -0500 (Thu, 19 Dec 2024)

EllapsedTime: 7.2 seconds

RetCode: 0

Status: OK

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD INSTALL Mulcom
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* installing to library ‘/home/biocbuild/bbs-3.20-bioc/R/site-library’
* installing *source* package ‘Mulcom’ ...
** using staged installation
** libs
using C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2  -Wall  -c mulLibs.cc -o mulLibs.o
mulLibs.cc: In function ‘void Single_SimulationC(double*, double*, double*, double*, double*, double*, int*, int*, int*, int*, int*)’:
mulLibs.cc:708:17: warning: statement has no effect [-Wunused-value]
  708 |                 current_cluster ;
      |                 ^~~~~~~~~~~~~~~
mulLibs.cc: In function ‘void Complete_SimulationC(double*, int*, double*, double*, int*, int*, int*, int*, int*)’:
mulLibs.cc:1022:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1022 |                         for ( int i = 0 ; i < sss2.size() ; i++ ) {
      |                                           ~~^~~~~~~~~~~~~
mulLibs.cc:1023:53: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |                                 for ( int j = 0 ; j < harmonic_means.size() ; j++ ) {
      |                                                   ~~^~~~~~~~~~~~~~~~~~~~~~~
g++ -std=gnu++17 -shared -L/home/biocbuild/bbs-3.20-bioc/R/lib -L/usr/local/lib -o Mulcom.so mulLibs.o -L/home/biocbuild/bbs-3.20-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.20-bioc/R/site-library/00LOCK-Mulcom/00new/Mulcom/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Mulcom)