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This page was generated on 2024-11-20 12:02 -0500 (Wed, 20 Nov 2024).

HostnameOSArch (*)R versionInstalled pkgs
teran2Linux (Ubuntu 24.04.1 LTS)x86_644.4.2 (2024-10-31) -- "Pile of Leaves" 4481
nebbiolo2Linux (Ubuntu 24.04.1 LTS)x86_644.4.2 (2024-10-31) -- "Pile of Leaves" 4479
palomino8Windows Server 2022 Datacenterx644.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" 4359
lconwaymacOS 12.7.1 Montereyx86_644.4.1 (2024-06-14) -- "Race for Your Life" 4539
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch644.4.1 (2024-06-14) -- "Race for Your Life" 4493
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1330/2289HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
MsBackendMetaboLights 1.0.0  (landing page)
Johannes Rainer
Snapshot Date: 2024-11-19 13:40 -0500 (Tue, 19 Nov 2024)
git_url: https://git.bioconductor.org/packages/MsBackendMetaboLights
git_branch: RELEASE_3_20
git_last_commit: 12c3e12
git_last_commit_date: 2024-10-29 11:34:31 -0500 (Tue, 29 Oct 2024)
teran2Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    ERROR  skipped
nebbiolo2Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    ERROR  
palomino8Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    ERROR    OK  
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    OK    ERROR  

BUILD results for MsBackendMetaboLights on teran2

To the developers/maintainers of the MsBackendMetaboLights package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MsBackendMetaboLights.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: MsBackendMetaboLights
Version: 1.0.0
Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data MsBackendMetaboLights
StartedAt: 2024-11-19 20:17:30 -0500 (Tue, 19 Nov 2024)
EndedAt: 2024-11-19 20:18:18 -0500 (Tue, 19 Nov 2024)
EllapsedTime: 47.7 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data MsBackendMetaboLights
###
##############################################################################
##############################################################################


* checking for file ‘MsBackendMetaboLights/DESCRIPTION’ ... OK
* preparing ‘MsBackendMetaboLights’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘MsBackendMetaboLights.Rmd’ using rmarkdown

Quitting from lines 191-192 [unnamed-chunk-11] (MsBackendMetaboLights.Rmd)
Error: processing vignette 'MsBackendMetaboLights.Rmd' failed with diagnostics:
cannot open the connection to 'ftp://ftp.ebi.ac.uk/pub/databases/metabolights/studies/public/MTBLS39/a_MTBLS39_the_plasticity_of_the_grapevine_berry_transcriptome_metabolite_profiling_mass_spectrometry.txt'
--- failed re-building ‘MsBackendMetaboLights.Rmd’

SUMMARY: processing the following file failed:
  ‘MsBackendMetaboLights.Rmd’

Error: Vignette re-building failed.
Execution halted