Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2024-12-23 12:07 -0500 (Mon, 23 Dec 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4744 |
palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" | 4487 |
merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4515 |
kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4467 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1239/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
MetMashR 1.0.0 (landing page) Gavin Rhys Lloyd
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | |||||||||
palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
merida1 | macOS 12.7.5 Monterey / x86_64 | OK | ERROR | skipped | skipped | |||||||||
kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
To the developers/maintainers of the MetMashR package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MetMashR.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: MetMashR |
Version: 1.0.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data MetMashR |
StartedAt: 2024-12-20 03:14:02 -0500 (Fri, 20 Dec 2024) |
EndedAt: 2024-12-20 03:18:40 -0500 (Fri, 20 Dec 2024) |
EllapsedTime: 278.2 seconds |
RetCode: 1 |
Status: ERROR |
PackageFile: None |
PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data MetMashR ### ############################################################################## ############################################################################## * checking for file ‘MetMashR/DESCRIPTION’ ... OK * preparing ‘MetMashR’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘Extending_MetMashR.Rmd’ using rmarkdown Quitting from lines 535-553 [unnamed-chunk-19] (Extending_MetMashR.Rmd) Error: processing vignette 'Extending_MetMashR.Rmd' failed with diagnostics: invalid class "openbabel_structure" object: The required package "ChemmineOB" is not installed. --- failed re-building ‘Extending_MetMashR.Rmd’ --- re-building ‘annotate_mixtures.Rmd’ using rmarkdown 2024-12-20 03:17:26.468 R[741:76743286] XType: Using static font registry. --- finished re-building ‘annotate_mixtures.Rmd’ --- re-building ‘exploring_mtox.Rmd’ using rmarkdown Quitting from lines 149-170 [unnamed-chunk-7] (exploring_mtox.Rmd) Error: processing vignette 'exploring_mtox.Rmd' failed with diagnostics: invalid class "openbabel_structure" object: The required package "ChemmineOB" is not installed. --- failed re-building ‘exploring_mtox.Rmd’ --- re-building ‘using_MetMashR.Rmd’ using rmarkdown --- finished re-building ‘using_MetMashR.Rmd’ SUMMARY: processing the following files failed: ‘Extending_MetMashR.Rmd’ ‘exploring_mtox.Rmd’ Error: Vignette re-building failed. Execution halted