Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2024-11-20 12:07 -0500 (Wed, 20 Nov 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
teran2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4481 |
nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4479 |
palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" | 4359 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4539 |
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4493 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1383/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
MVCClass 1.80.0 (landing page) Elizabeth Whalen
| teran2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | |||||||||
nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | ||||||||||
palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | OK | ||||||||||
To the developers/maintainers of the MVCClass package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MVCClass.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
Package: MVCClass |
Version: 1.80.0 |
Command: /home/biocbuild/R/R/bin/R CMD check --install=check:MVCClass.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings MVCClass_1.80.0.tar.gz |
StartedAt: 2024-11-20 10:22:53 -0000 (Wed, 20 Nov 2024) |
EndedAt: 2024-11-20 10:23:20 -0000 (Wed, 20 Nov 2024) |
EllapsedTime: 27.1 seconds |
RetCode: 0 |
Status: OK |
CheckDir: MVCClass.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD check --install=check:MVCClass.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings MVCClass_1.80.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.20-bioc/meat/MVCClass.Rcheck’ * using R version 4.4.1 (2024-06-14) * using platform: aarch64-unknown-linux-gnu * R was compiled by gcc (GCC) 12.2.1 20220819 (openEuler 12.2.1-14) GNU Fortran (GCC) 10.3.1 * running under: openEuler 22.03 (LTS-SP1) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘MVCClass/DESCRIPTION’ ... OK * this is package ‘MVCClass’ version ‘1.80.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘MVCClass’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... NOTE Malformed Description field: should contain one or more complete sentences. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking whether startup messages can be suppressed ... OK * checking dependencies in R code ... NOTE 'library' or 'require' call to ‘methods’ which was already attached by Depends. Please remove these calls from your code. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE File ‘MVCClass/R/zzz.R’: .onLoad calls: require("methods") Package startup functions should not change the search path. See section ‘Good practice’ in '?.onAttach'. * checking Rd files ... NOTE prepare_Rd: MVC-class.Rd:54-55: Dropping empty section \examples prepare_Rd: dfModel-class.Rd:42-43: Dropping empty section \examples prepare_Rd: gAddChildMessage-class.Rd:42-43: Dropping empty section \examples prepare_Rd: gAddDataMessage-class.Rd:42-43: Dropping empty section \examples prepare_Rd: gAddMessage-class.Rd:37-38: Dropping empty section \examples prepare_Rd: gAddViewMessage-class.Rd:42-43: Dropping empty section \examples prepare_Rd: gAskAncestorMessage-class.Rd:62-63: Dropping empty section \examples prepare_Rd: gEventFun-class.Rd:49-50: Dropping empty section \examples prepare_Rd: gMessage-class.Rd:32-33: Dropping empty section \examples prepare_Rd: gModel-class.Rd:71-72: Dropping empty section \examples prepare_Rd: gModifyMessage-class.Rd:52-53: Dropping empty section \examples prepare_Rd: gSendChildMessage-class.Rd:58-59: Dropping empty section \examples prepare_Rd: gSendParentMessage-class.Rd:49-50: Dropping empty section \examples prepare_Rd: gUpdateDataMessage-class.Rd:51-52: Dropping empty section \examples prepare_Rd: gUpdateMessage-class.Rd:37-38: Dropping empty section \examples prepare_Rd: gUpdateViewMessage-class.Rd:43-44: Dropping empty section \examples prepare_Rd: genView-class.Rd:62-63: Dropping empty section \examples prepare_Rd: linkedModelMVC-class.Rd:59-60: Dropping empty section \examples prepare_Rd: plotView-class.Rd:67-68: Dropping empty section \examples prepare_Rd: qqPlotView-class.Rd:59-60: Dropping empty section \examples prepare_Rd: sPlotView-class.Rd:69-70: Dropping empty section \examples prepare_Rd: singleModelMVC-class.Rd:41-42: Dropping empty section \examples prepare_Rd: spreadView-class.Rd:50-51: Dropping empty section \examples * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... NONE * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 4 NOTEs See ‘/home/biocbuild/bbs-3.20-bioc/meat/MVCClass.Rcheck/00check.log’ for details.
MVCClass.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD INSTALL MVCClass ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-4.4.1/site-library’ * installing *source* package ‘MVCClass’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MVCClass)